BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027334
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At5g01750
pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At5g01750
Length = 217
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 122/198 (61%), Positives = 155/198 (78%), Gaps = 4/198 (2%)
Query: 5 PSLIGGGAAVAVISPQYCCPYPVDLAIVRKVMTITDGNFVVTDTNGNILFKVKGVFLTFI 64
P+ GG V+ P+YC PYP+D AIVRK ++TDGNFV+TD NGN+LFKVK +
Sbjct: 19 PTPQAGGV---VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFG-L 74
Query: 65 HQRRVLLDGAGNPIVTLREKAMTAHHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVF 124
H +RVLLDG+G P+VTLREK ++ H RWQVFRG ST+ +DL+++ K SS ++TKLDVF
Sbjct: 75 HDKRVLLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVF 134
Query: 125 LANNTKEDVCDFRVKGSWFERSCTIYAGESSAIIAQMHKKHTVQSILIGKDNFAVTVYPN 184
L +N E CDFRVKGSW ERSC +YAGES AI+AQ H+KHTVQS+ +GKDNF+VTVYPN
Sbjct: 135 LGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPN 194
Query: 185 IDYAFIVALIVILDEINH 202
+DYAFI +L+VILD++N
Sbjct: 195 VDYAFIASLVVILDDVNR 212
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 80 TLREKAMTAHHRW---QVFRGESTEPQDLIFSAKTSSVWNVRTKL------DVFLANNTK 130
TL + MT H W Q+ ++TE Q + KTS+ W +++ VF AN
Sbjct: 349 TLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQEN 408
Query: 131 EDVCDFRVKGSWFERSCTIYAGESSAIIAQMHKKHT--VQSILIGKDNFAVTVYPNIDYA 188
+ V G E + + +M +++T V+ + + ++++ N + A
Sbjct: 409 LPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTA 468
Query: 189 FIVALIVI 196
L+V+
Sbjct: 469 EPRHLLVM 476
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 80 TLREKAMTAHHRW---QVFRGESTEPQDLIFSAKTSSVWNVRTKL------DVFLANNTK 130
TL + MT H W Q+ ++TE Q + KTS+ W +++ VF AN
Sbjct: 355 TLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQEN 414
Query: 131 EDVCDFRVKGSWFERSCTIYAGESSAIIAQMHKKHT--VQSILIGKDNFAVTVYPNIDYA 188
+ V G E + + +M +++T V+ + + ++++ N + A
Sbjct: 415 LPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTA 474
Query: 189 FIVALIVI 196
L+V+
Sbjct: 475 EPRHLLVM 482
>pdb|3VUP|A Chain A, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
pdb|3VUP|B Chain B, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
Length = 351
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 92 WQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLANNTKEDVCDFRVKGS 141
WQ ++T+P L+ T VWN ++ D F NN D C R+ G
Sbjct: 206 WQADAIKTTDPGALV----TMGVWNPKSNTDHFNMNNHYSDHC-LRLAGG 250
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 80 TLREKAMTAHHRW---QVFRGESTEPQDLIFSAKTSSVWNVRTKL 121
TL + MT H W Q+ ++TE Q KTS+ W+ +++
Sbjct: 385 TLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRI 429
>pdb|3NYI|A Chain A, The Crystal Structure Of A Fat Acid (Stearic Acid)-Binding
Protein From Eubacterium Ventriosum Atcc 27560.
pdb|3NYI|B Chain B, The Crystal Structure Of A Fat Acid (Stearic Acid)-Binding
Protein From Eubacterium Ventriosum Atcc 27560
Length = 297
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 13 AVAVISPQYCCPYPVDLAIVRKVMTI 38
A+ ++S + PYP+ L ++RK T+
Sbjct: 271 AIGIVSAVHTGPYPIGLGVIRKYETL 296
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 83 EKAMTAHHRW---QVFRGESTEPQDLIFSAKTSSVWNVRTKL------DVFLANNTKEDV 133
+ MT H W Q+ ++TE Q + KTS+ W +++ VF AN +
Sbjct: 1 QNPMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPI 60
Query: 134 CDFRVKGSWFERSCTIYAGESSAIIAQMHKKHT--VQSILIGKDNFAVTVYPNIDYAFIV 191
V G E + + +M +K+T V+ + + ++++ N + +
Sbjct: 61 LKRAVAGDASESALLKCIEVCCGSVMEMREKYTKIVEIPFNSTNKYQLSIHKNPNASEPK 120
Query: 192 ALIVI 196
L+V+
Sbjct: 121 HLLVM 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,061,580
Number of Sequences: 62578
Number of extensions: 228987
Number of successful extensions: 650
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 8
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)