Query 027334
Match_columns 225
No_of_seqs 117 out of 631
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 1.4E-41 3E-46 279.6 17.4 180 15-196 2-187 (187)
2 COG4894 Uncharacterized conser 100.0 4.2E-36 9.1E-41 230.7 9.7 155 26-203 5-159 (159)
3 PF03803 Scramblase: Scramblas 99.8 8.4E-17 1.8E-21 135.3 20.4 168 26-203 21-220 (221)
4 COG4894 Uncharacterized conser 98.7 4.2E-08 9.2E-13 76.2 6.9 69 23-94 26-94 (159)
5 KOG0621 Phospholipid scramblas 98.7 5.3E-07 1.2E-11 78.7 13.4 158 39-205 97-282 (292)
6 PF04525 Tub_2: Tubby C 2; In 98.1 3.1E-05 6.7E-10 63.5 10.6 88 49-141 11-99 (187)
7 PF03803 Scramblase: Scramblas 97.0 0.011 2.4E-07 49.4 11.2 66 43-112 78-148 (221)
8 PF09008 Head_binding: Head bi 71.6 14 0.00031 27.7 5.5 44 33-83 62-105 (114)
9 KOG0621 Phospholipid scramblas 71.0 23 0.00049 31.3 7.6 41 43-84 166-206 (292)
10 PF01167 Tub: Tub family; Int 64.0 34 0.00074 29.3 7.2 73 77-152 8-87 (246)
11 PF04790 Sarcoglycan_1: Sarcog 56.2 25 0.00055 30.5 5.1 50 27-76 103-154 (264)
12 COG4998 Predicted endonuclease 54.4 23 0.0005 28.6 4.2 35 144-185 22-56 (209)
13 COG5436 Predicted integral mem 53.2 47 0.001 26.7 5.7 17 68-84 93-109 (182)
14 KOG3950 Gamma/delta sarcoglyca 52.3 15 0.00033 31.5 3.0 48 28-75 126-173 (292)
15 PF02974 Inh: Protease inhibit 47.9 93 0.002 22.6 6.4 33 64-99 60-92 (99)
16 PF12396 DUF3659: Protein of u 44.9 37 0.00081 22.9 3.5 41 43-83 13-58 (64)
17 PF13860 FlgD_ig: FlgD Ig-like 44.5 49 0.0011 22.9 4.3 17 67-83 28-44 (81)
18 PRK15393 NUDIX hydrolase YfcD; 43.2 90 0.002 25.0 6.2 55 42-98 11-73 (180)
19 PF01947 DUF98: Protein of unk 41.8 40 0.00086 26.5 3.8 93 65-166 49-142 (149)
20 PRK12813 flgD flagellar basal 31.4 60 0.0013 27.5 3.5 17 66-82 126-142 (223)
21 cd03676 Nudix_hydrolase_3 Memb 31.4 2.1E+02 0.0045 22.7 6.6 62 38-99 2-73 (180)
22 TIGR02150 IPP_isom_1 isopenten 31.1 99 0.0021 24.1 4.6 54 43-96 1-61 (158)
23 PLN02552 isopentenyl-diphospha 26.9 2.2E+02 0.0047 24.5 6.2 58 41-98 23-92 (247)
24 PF01167 Tub: Tub family; Int 26.6 2.4E+02 0.0052 24.1 6.4 43 144-194 198-241 (246)
25 PF07680 DoxA: TQO small subun 26.5 1.5E+02 0.0033 23.0 4.7 30 61-91 45-74 (133)
26 PRK10523 lipoprotein involved 25.6 2.4E+02 0.0051 24.1 6.1 55 21-82 53-113 (234)
27 KOG4037 Photoreceptor synaptic 25.3 1.9E+02 0.004 23.8 5.1 36 18-60 72-109 (240)
28 PRK12633 flgD flagellar basal 24.3 95 0.002 26.3 3.5 18 65-82 130-147 (230)
29 PRK12816 flgG flagellar basal 24.2 85 0.0018 27.1 3.3 37 42-80 102-138 (264)
30 PF12690 BsuPI: Intracellular 23.7 63 0.0014 22.7 2.0 16 42-57 27-42 (82)
31 PF15529 Toxin_49: Putative to 22.8 93 0.002 22.5 2.7 27 31-59 22-48 (89)
32 PRK12691 flgG flagellar basal 22.1 1.3E+02 0.0027 25.9 3.9 37 42-80 102-138 (262)
33 PF09101 Exotox-A_bind: Exotox 21.7 3.5E+02 0.0075 22.8 6.1 111 36-153 45-172 (262)
34 smart00634 BID_1 Bacterial Ig- 21.5 2.5E+02 0.0054 19.6 4.8 10 43-52 24-33 (92)
35 PRK06655 flgD flagellar basal 20.6 1.7E+02 0.0036 24.7 4.3 19 65-83 127-145 (225)
36 PF11906 DUF3426: Protein of u 20.3 1.5E+02 0.0033 22.7 3.7 35 49-83 65-106 (149)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=1.4e-41 Score=279.57 Aligned_cols=180 Identities=36% Similarity=0.750 Sum_probs=110.0
Q ss_pred EEeCCCccCCcCeEEEEEeeeeeEeCCCEEEEcCCCCEEEEEEc-cCCCcccceEEEEcCCCCcEEEEEeccccccceEE
Q 027334 15 AVISPQYCCPYPVDLAIVRKVMTITDGNFVVTDTNGNILFKVKG-VFLTFIHQRRVLLDGAGNPIVTLREKAMTAHHRWQ 93 (225)
Q Consensus 15 ~vv~~~~~~~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g-~~~s~~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~ 93 (225)
+||+++||+++|++|+||+|.+++++++|+|+|++|+++|+|+| ++++ +++++.|+|++|+||++|++|.++++++|+
T Consensus 2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s-~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~ 80 (187)
T PF04525_consen 2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFS-IGKKRTLMDASGNPLFTIRRKLFSLRPTWE 80 (187)
T ss_dssp -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTT-BTTEEEEE-TTS-EEEEEE--------EEE
T ss_pred cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccC-CCCEEEEECCCCCEEEEEEeeecccceEEE
Confidence 46799999999999999999888877799999999999999999 8999 999999999999999999999999999999
Q ss_pred EEEcCCCCCCceEEEEEecceecccceEEEEEcCCC-----CCceeeEEEEeeeeceeEEEEeCCCCceeEEEEeeeece
Q 027334 94 VFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLANNT-----KEDVCDFRVKGSWFERSCTIYAGESSAIIAQMHKKHTVQ 168 (225)
Q Consensus 94 i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~~~~-----~~~~~~~~v~G~~~~~~~~I~~~~~~~~VA~V~kk~~~~ 168 (225)
+|++++.+..+++|+||+.+.+..++++.+++.... +++.++|+|+|||++++|+|++.+ |+.||+|+||+..+
T Consensus 81 i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~-g~~VA~i~rk~~~k 159 (187)
T PF04525_consen 81 IYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSG-GRVVAEISRKYSSK 159 (187)
T ss_dssp EEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC---EEEEEEE-----
T ss_pred EEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcC-CCEEEEEeccccee
Confidence 999997544568999998866667788888887432 246789999999999999999532 89999999988888
Q ss_pred eeeeeeceEEEEEeCCCcHHHHHHHHHH
Q 027334 169 SILIGKDNFAVTVYPNIDYAFIVALIVI 196 (225)
Q Consensus 169 ~~~~~~d~Y~l~V~pg~D~~lvlalvii 196 (225)
.|+.++|+|.|+|+||+|++|++|||+|
T Consensus 160 ~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 160 KWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp -----B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred eEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 8999999999999999999999999986
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.2e-36 Score=230.68 Aligned_cols=155 Identities=23% Similarity=0.446 Sum_probs=142.3
Q ss_pred CeEEEEEeeeeeEeCCCEEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEEEEeccccccceEEEEEcCCCCCCce
Q 027334 26 PVDLAIVRKVMTITDGNFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVTLREKAMTAHHRWQVFRGESTEPQDL 105 (225)
Q Consensus 26 ~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~ 105 (225)
..+|.|+||+.++++ +|.|+|++|+.+|+|+|+.++ ++++++|+|++|.+|.+|++|.++++|+|+|.++++ .
T Consensus 5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~-i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g-----~ 77 (159)
T COG4894 5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFS-IGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG-----T 77 (159)
T ss_pred hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEe-eCceEEEEecCCCChHHHHHHHhhccceeEEEcCCC-----C
Confidence 357899999999988 999999999999999999999 999999999999999999999999999999999986 4
Q ss_pred EEEEEecceecccceEEEEEcCCCCCceeeEEEEeeeeceeEEEEeCCCCceeEEEEeeeeceeeeeeeceEEEEEeCCC
Q 027334 106 IFSAKTSSVWNVRTKLDVFLANNTKEDVCDFRVKGSWFERSCTIYAGESSAIIAQMHKKHTVQSILIGKDNFAVTVYPNI 185 (225)
Q Consensus 106 i~tikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~~~VA~V~kk~~~~~~~~~~d~Y~l~V~pg~ 185 (225)
++.++|+ +..+++++.+ +..+|+++||+|+.+|++.+| ++.+|+|+|| |++++|+|.|+|+|+.
T Consensus 78 ~~~vrKK-~tf~Rdk~e~--------d~~~~eihGNi~d~efkl~dg--~~~~aeVsKk-----wf~~rdTY~l~vapde 141 (159)
T COG4894 78 VCEVRKK-VTFSRDKFEI--------DGLNWEIHGNIWDDEFKLTDG--ENVRAEVSKK-----WFSWRDTYHLQVAPDE 141 (159)
T ss_pred EEEEEEE-EEEEeeeEEE--------cCCCeEEecceeceEEEEecC--Cceehhheee-----eEeccceEEEEEcCch
Confidence 8888876 4456888877 345699999999999999999 6799999999 8999999999999999
Q ss_pred cHHHHHHHHHHhhhhhhc
Q 027334 186 DYAFIVALIVILDEINHA 203 (225)
Q Consensus 186 D~~lvlalviiiD~~~~~ 203 (225)
|..+|+++|+++|++.++
T Consensus 142 ~a~lii~i~VaLD~v~~~ 159 (159)
T COG4894 142 DALLIIAIAVALDMVLYN 159 (159)
T ss_pred hhHHHHHHHHHHHHHhcC
Confidence 999999999999999763
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.77 E-value=8.4e-17 Score=135.31 Aligned_cols=168 Identities=18% Similarity=0.268 Sum_probs=133.5
Q ss_pred CeEEEEEeeeeeE-------eCCCEEEEcCCCCEEEEEEccCC--------CcccceEEEEcCCCCcEEEEEeccccc--
Q 027334 26 PVDLAIVRKVMTI-------TDGNFVVTDTNGNILFKVKGVFL--------TFIHQRRVLLDGAGNPIVTLREKAMTA-- 88 (225)
Q Consensus 26 ~~~l~vk~k~~s~-------~~~~f~V~D~~G~~vf~V~g~~~--------s~~~~~~~l~D~~G~~L~~I~~k~~s~-- 88 (225)
--+++|+|+...+ ..+.|.|+|.+|+.+|.+....- +..+-++.|+|..|+++++|+|+.-..
T Consensus 21 ~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C 100 (221)
T PF03803_consen 21 LDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSC 100 (221)
T ss_pred CCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceec
Confidence 3567777775432 35699999999999999976421 112456789999999999999976432
Q ss_pred ----cceEEEEEcCCCCCCceEEEEEecceecccceEEEEEcCCCCCceeeEEEEee------eeceeEEEEeCCCCcee
Q 027334 89 ----HHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLANNTKEDVCDFRVKGS------WFERSCTIYAGESSAII 158 (225)
Q Consensus 89 ----~~~~~i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~------~~~~~~~I~~~~~~~~V 158 (225)
..+.+|+.+. ++++++|+++ +..++++|+|..++ ....+.|+|. +.+++|.|++.+ |+.|
T Consensus 101 ~~~~~~~~~V~~p~----g~~iG~I~q~-~~~~~~~f~I~d~~----~~~~~~I~gp~~~~~~~~~~~F~I~~~~-~~~v 170 (221)
T PF03803_consen 101 CPCCLQEMEVESPP----GNLIGSIRQP-FSCCRPNFDIFDAN----GNPIFTIKGPCCCCSCCCDWEFEIKDPN-GQEV 170 (221)
T ss_pred ccccceeEEEecCC----CcEEEEEEEc-CcccceEEEEEECC----CceEEEEeCCcceeccccceeeeeeccc-CcEE
Confidence 2567776665 5799999976 55578999998775 3567889887 468999999975 7999
Q ss_pred EEEEeeee--ceeeeeeeceEEEEEeCCCc---HHHHHHHHHHhhhhhhc
Q 027334 159 AQMHKKHT--VQSILIGKDNFAVTVYPNID---YAFIVALIVILDEINHA 203 (225)
Q Consensus 159 A~V~kk~~--~~~~~~~~d~Y~l~V~pg~D---~~lvlalviiiD~~~~~ 203 (225)
|+|+|+|+ .+++++..|+|.|+..+..| -+++||+++.||.++-+
T Consensus 171 g~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe 220 (221)
T PF03803_consen 171 GSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE 220 (221)
T ss_pred EEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence 99999997 46788999999999999877 49999999999998765
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.2e-08 Score=76.24 Aligned_cols=69 Identities=19% Similarity=0.403 Sum_probs=63.9
Q ss_pred CCcCeEEEEEeeeeeEeCCCEEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEEEEeccccccceEEE
Q 027334 23 CPYPVDLAIVRKVMTITDGNFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVTLREKAMTAHHRWQV 94 (225)
Q Consensus 23 ~~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i 94 (225)
...+..++|.-+.+++.+ .|+|+|+.|+.++.++.++.+ +..++.|.|.+|+ ++.+++|...++++|++
T Consensus 26 ~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~-l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~ 94 (159)
T COG4894 26 RDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLS-LLPRYEISDGGGT-VCEVRKKVTFSRDKFEI 94 (159)
T ss_pred CCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhh-ccceeEEEcCCCC-EEEEEEEEEEEeeeEEE
Confidence 568999999999999988 899999999999999999999 9999999999999 88888888777999987
No 5
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=98.67 E-value=5.3e-07 Score=78.67 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=111.1
Q ss_pred eCCCEEEEcCCCCEEEEEEccCC--C--c----ccceEEEEcCCCCcEEEEEecccccc--------ceEEEEEcCCCCC
Q 027334 39 TDGNFVVTDTNGNILFKVKGVFL--T--F----IHQRRVLLDGAGNPIVTLREKAMTAH--------HRWQVFRGESTEP 102 (225)
Q Consensus 39 ~~~~f~V~D~~G~~vf~V~g~~~--s--~----~~~~~~l~D~~G~~L~~I~~k~~s~~--------~~~~i~~~~~~~~ 102 (225)
+.+.|.|.|.+|+.+|.+-...- + + -+-...+.|.-|+++++++|+..... ...++..+ +
T Consensus 97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p----~ 172 (292)
T KOG0621|consen 97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSP----P 172 (292)
T ss_pred cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcC----C
Confidence 46799999999999997754321 0 0 23567899999999999999764333 22333333 3
Q ss_pred CceEEEEEecceecccceEEEEEcCCCCCceeeEEEEee-------eeceeEEEEeCCCCceeEEEEeeee--ceeeeee
Q 027334 103 QDLIFSAKTSSVWNVRTKLDVFLANNTKEDVCDFRVKGS-------WFERSCTIYAGESSAIIAQMHKKHT--VQSILIG 173 (225)
Q Consensus 103 ~~~i~tikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~-------~~~~~~~I~~~~~~~~VA~V~kk~~--~~~~~~~ 173 (225)
...+++|.+. .....++|+|.-.. ....+.|+|- +-+..|.+...+++..|++|.|+|. ..+.++.
T Consensus 173 ~~~lG~v~q~-~~~~~~~f~i~~~~----~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTD 247 (292)
T KOG0621|consen 173 MGLLGKVLQT-WGCVNPNFHLWDRD----GNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTD 247 (292)
T ss_pred CceEEEEEEe-eccccceEEEEccc----ceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheec
Confidence 4577777754 22345677764321 2344555554 3345555555445899999999997 5789999
Q ss_pred eceEEEEEeCCCcH---HHHHHHHHHhhhhhhcCC
Q 027334 174 KDNFAVTVYPNIDY---AFIVALIVILDEINHASS 205 (225)
Q Consensus 174 ~d~Y~l~V~pg~D~---~lvlalviiiD~~~~~~~ 205 (225)
.|+|.|...-..|. ++++|.+.-||.+.-+++
T Consensus 248 ad~f~v~FPldLdvk~kavllga~flID~~~Fe~~ 282 (292)
T KOG0621|consen 248 ADTFVVHFPLDLDVKLKALLLGSTFLIDYMSFESR 282 (292)
T ss_pred cceeeEecCCcCCHHHHhhhhhheeeEEEEEEecC
Confidence 99999999877773 999999999998888776
No 6
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=98.12 E-value=3.1e-05 Score=63.54 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=51.8
Q ss_pred CCCEEEEEEccCCCcccceEEEEcCCCCcEEEEEe-ccccccceEEEEEcCCCCCCceEEEEEecceecccceEEEEEcC
Q 027334 49 NGNILFKVKGVFLTFIHQRRVLLDGAGNPIVTLRE-KAMTAHHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLAN 127 (225)
Q Consensus 49 ~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~I~~-k~~s~~~~~~i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~~ 127 (225)
.....++|..+..++.++.+.|+|.+|++++++.. +.++++.+..+++.. ++++++|+++ .++++++|.++..+
T Consensus 11 ~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~----G~~L~~i~~k-~~~l~~~w~i~~~~ 85 (187)
T PF04525_consen 11 PQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDAS----GNPLFTIRRK-LFSLRPTWEIYRGG 85 (187)
T ss_dssp SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TT----S-EEEEEE---------EEEEEETT
T ss_pred CCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCC----CCEEEEEEee-ecccceEEEEEECC
Confidence 45677888655443268999999999999999999 889999999999976 4799999985 56789999999987
Q ss_pred CCCCceeeEEEEee
Q 027334 128 NTKEDVCDFRVKGS 141 (225)
Q Consensus 128 ~~~~~~~~~~v~G~ 141 (225)
..+++.+.++++-.
T Consensus 86 ~~~~~~~i~tvkk~ 99 (187)
T PF04525_consen 86 GSEGKKPIFTVKKK 99 (187)
T ss_dssp ---GGGEEEEEE--
T ss_pred CCccCceEEEEEEe
Confidence 54334467788755
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=97.01 E-value=0.011 Score=49.40 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=48.1
Q ss_pred EEEEcCCCCEEEEEEccCCC-----cccceEEEEcCCCCcEEEEEeccccccceEEEEEcCCCCCCceEEEEEec
Q 027334 43 FVVTDTNGNILFKVKGVFLT-----FIHQRRVLLDGAGNPIVTLREKAMTAHHRWQVFRGESTEPQDLIFSAKTS 112 (225)
Q Consensus 43 f~V~D~~G~~vf~V~g~~~s-----~~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~i~tikk~ 112 (225)
..|+|.+|+.+++++-...- ....+..+.++.|++|.+|+++...+.++|+|++.++ +++++|+-+
T Consensus 78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~----~~~~~I~gp 148 (221)
T PF03803_consen 78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANG----NPIFTIKGP 148 (221)
T ss_pred EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCC----ceEEEEeCC
Confidence 46788888888888764311 0135677788888888888887766788888888763 678888754
No 8
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=71.64 E-value=14 Score=27.66 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=27.3
Q ss_pred eeeeeEeCCCEEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEEEEe
Q 027334 33 RKVMTITDGNFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVTLRE 83 (225)
Q Consensus 33 ~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~I~~ 83 (225)
.+.+-+..+.|.+++ |+.+..|...- +...++|++|..+|.+-.
T Consensus 62 ~QPi~iN~gg~~~y~--gq~a~~vt~~~-----hSMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 62 AQPIIINKGGFPVYN--GQIAKFVTVPG-----HSMAVYDANGQQQFYFPN 105 (114)
T ss_dssp -SSEEE-TTS-EEET--TEE--EEESSS-----EEEEEE-TTS-EEEEESE
T ss_pred cCCEEEccCCceEEc--cceeEEEEccC-----ceEEEEeCCCcEEEeecc
Confidence 345667666899987 55777776653 557899999999998855
No 9
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=71.05 E-value=23 Score=31.32 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=17.6
Q ss_pred EEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEEEEec
Q 027334 43 FVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVTLREK 84 (225)
Q Consensus 43 f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~I~~k 84 (225)
+.|....+..+.+|...+.- ...++.|.|..++.++.|+-.
T Consensus 166 ~~v~~p~~~~lG~v~q~~~~-~~~~f~i~~~~~~~v~~v~gp 206 (292)
T KOG0621|consen 166 IEIQSPPMGLLGKVLQTWGC-VNPNFHLWDRDGNLVFLVEGP 206 (292)
T ss_pred EEEEcCCCceEEEEEEeecc-ccceEEEEcccceeEEEEEcC
Confidence 34444444444444443333 344444444444444444443
No 10
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=64.02 E-value=34 Score=29.30 Aligned_cols=73 Identities=8% Similarity=0.170 Sum_probs=43.7
Q ss_pred cEEEEEecc--c--cccceEEEEEcCCCCCCceEEEEEecceecccceEEEEEcCC--C-CCceeeEEEEeeeeceeEEE
Q 027334 77 PIVTLREKA--M--TAHHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLANN--T-KEDVCDFRVKGSWFERSCTI 149 (225)
Q Consensus 77 ~L~~I~~k~--~--s~~~~~~i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~~~--~-~~~~~~~~v~G~~~~~~~~I 149 (225)
..+.|+|.. + .+.+.|..+..+. .++.+...||++ ..-...|.|++... + .++...=+|+.|+++-+|+|
T Consensus 8 vqC~I~R~k~g~~~~lyp~y~l~l~~~--~~kfLLaArK~~-~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT~F~i 84 (246)
T PF01167_consen 8 VQCFIRRDKSGLTRGLYPGYYLYLEGE--NGKFLLAARKRK-RSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGTEFTI 84 (246)
T ss_dssp EEEEEEEESTTCCCT---EEEEEEEST--TSEEEEEEEEEC-SSSSEEEEEESSHHHHCTT---ESEEEEE-TTSSEEEE
T ss_pred EEEEEEEECCCCCcccCcEeEeccccC--CCcEEEeeeecc-cCCCcceEEecCCCccccCCCceeeeeccccceeEEEE
Confidence 347776533 2 2568888888632 357888888753 23356788876542 1 12223338899999999999
Q ss_pred EeC
Q 027334 150 YAG 152 (225)
Q Consensus 150 ~~~ 152 (225)
++.
T Consensus 85 yD~ 87 (246)
T PF01167_consen 85 YDN 87 (246)
T ss_dssp EES
T ss_pred ECC
Confidence 995
No 11
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=56.22 E-value=25 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=27.8
Q ss_pred eEEEEEeee-eeEeCCCEEEEcC-CCCEEEEEEccCCCcccceEEEEcCCCC
Q 027334 27 VDLAIVRKV-MTITDGNFVVTDT-NGNILFKVKGVFLTFIHQRRVLLDGAGN 76 (225)
Q Consensus 27 ~~l~vk~k~-~s~~~~~f~V~D~-~G~~vf~V~g~~~s~~~~~~~l~D~~G~ 76 (225)
.+|.+-+.. .....+.|.|+|. +|+.+|.++..-...-.+++.+..+.|.
T Consensus 103 ~~l~v~~~~~v~~~~~~F~V~d~~~g~~lFsad~~~v~v~~~~lrv~~~~G~ 154 (264)
T PF04790_consen 103 SRLVVGPDGTVEAQSNRFEVKDPRDGKTLFSADRPEVVVGAEKLRVTGPEGA 154 (264)
T ss_pred ceEEECCCccEEEecCeEEEEcCCCCceEEEecCCceEEeeeeEEecCCccE
Confidence 455555544 4444556777777 7777777766432201355555666664
No 12
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=54.36 E-value=23 Score=28.64 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=29.6
Q ss_pred ceeEEEEeCCCCceeEEEEeeeeceeeeeeeceEEEEEeCCC
Q 027334 144 ERSCTIYAGESSAIIAQMHKKHTVQSILIGKDNFAVTVYPNI 185 (225)
Q Consensus 144 ~~~~~I~~~~~~~~VA~V~kk~~~~~~~~~~d~Y~l~V~pg~ 185 (225)
.++|.|.++ |..|++|.-. --.++.+|.++|..|.
T Consensus 22 Arn~~ve~e--gveVgEiDIV-----Aek~GerYavEVKAG~ 56 (209)
T COG4998 22 ARNMPVEDE--GVEVGEIDIV-----AEKGGERYAVEVKAGM 56 (209)
T ss_pred eecceeecC--CeEEEEEEEE-----EecCCcEEEEEEeccc
Confidence 588999988 8999999866 4568999999999884
No 13
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=53.25 E-value=47 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=9.2
Q ss_pred EEEEcCCCCcEEEEEec
Q 027334 68 RVLLDGAGNPIVTLREK 84 (225)
Q Consensus 68 ~~l~D~~G~~L~~I~~k 84 (225)
+.|+|++|+.+++|..+
T Consensus 93 vsiyds~~nn~fS~ND~ 109 (182)
T COG5436 93 VSIYDSNGNNFFSINDR 109 (182)
T ss_pred EEEEcCCCCceEEeccc
Confidence 45555555555555443
No 14
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=52.26 E-value=15 Score=31.55 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=26.5
Q ss_pred EEEEEeeeeeEeCCCEEEEcCCCCEEEEEEccCCCcccceEEEEcCCC
Q 027334 28 DLAIVRKVMTITDGNFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAG 75 (225)
Q Consensus 28 ~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G 75 (225)
.|.+-.+.....+..|.|.|.+|+.+|.++..-.-....++.+..+.|
T Consensus 126 ~l~lgp~~ve~~~~~Fev~~~dgk~LFsad~dEv~vgae~LRv~g~~G 173 (292)
T KOG3950|consen 126 QLILGPKKVEAQCKRFEVNDVDGKLLFSADEDEVVVGAEKLRVLGAEG 173 (292)
T ss_pred eEEechHHHhhhhceeEEecCCCcEEEEeccceeEeeeeeeEeccCCc
Confidence 455544444443447777777777777777643220125555555444
No 15
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=47.86 E-value=93 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=24.0
Q ss_pred ccceEEEEcCCCCcEEEEEeccccccceEEEEEcCC
Q 027334 64 IHQRRVLLDGAGNPIVTLREKAMTAHHRWQVFRGES 99 (225)
Q Consensus 64 ~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~ 99 (225)
-++.+.|+|++|+.|..+.+.. -..|+...+++
T Consensus 60 ~gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~g 92 (99)
T PF02974_consen 60 TGDGLVLTDADGSVVAFFYRSG---DGRFEGQTPDG 92 (99)
T ss_dssp ETTEEEEE-TTS-EEEEEEEEC---TTEEEEEECCC
T ss_pred cCCEEEEECCCCCEEEEEEccC---CeeEEeEcCCC
Confidence 3578999999999999998854 25787777763
No 16
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=44.87 E-value=37 Score=22.89 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=26.5
Q ss_pred EEEEcCCCCEEEEEE-ccCCC----cccceEEEEcCCCCcEEEEEe
Q 027334 43 FVVTDTNGNILFKVK-GVFLT----FIHQRRVLLDGAGNPIVTLRE 83 (225)
Q Consensus 43 f~V~D~~G~~vf~V~-g~~~s----~~~~~~~l~D~~G~~L~~I~~ 83 (225)
=.|.|.+|+++.+|. |.+-. .....=.|.|.+|+.|.+...
T Consensus 13 G~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae~ 58 (64)
T PF12396_consen 13 GNVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAEP 58 (64)
T ss_pred CeEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEEe
Confidence 368899999999964 43211 022333677888888776654
No 17
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=44.50 E-value=49 Score=22.87 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=9.8
Q ss_pred eEEEEcCCCCcEEEEEe
Q 027334 67 RRVLLDGAGNPIVTLRE 83 (225)
Q Consensus 67 ~~~l~D~~G~~L~~I~~ 83 (225)
++.|+|++|+.+.++.-
T Consensus 28 ~v~I~d~~G~~V~t~~~ 44 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISL 44 (81)
T ss_dssp EEEEEETTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 56666666666665543
No 18
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=43.15 E-value=90 Score=25.03 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=34.4
Q ss_pred CEEEEcCCCCEEEEEEc------cCCCcccceEEEEcCCCCcEEEEEeccc--cccceEEEEEcC
Q 027334 42 NFVVTDTNGNILFKVKG------VFLTFIHQRRVLLDGAGNPIVTLREKAM--TAHHRWQVFRGE 98 (225)
Q Consensus 42 ~f~V~D~~G~~vf~V~g------~~~s~~~~~~~l~D~~G~~L~~I~~k~~--s~~~~~~i~~~~ 98 (225)
-+.|+|++|+.+..+.- ++.. ..-.+.|+|.+|+.|+ .+|... .+...|+..-+|
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~~h-~~~~v~v~~~~g~iLL-~~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCLRH-RATYIVVHDGMGKILV-QRRTETKDFLPGMLDATAGG 73 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCCce-EEEEEEEECCCCeEEE-EEeCCCCCCCCCcccccCCC
Confidence 58999999999998832 2222 3456677898888776 444322 123456555444
No 19
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=41.78 E-value=40 Score=26.55 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=46.3
Q ss_pred cceEEEEcCCCCcEEEEEeccccccceEEEEEcCCCCCCceEEEEEe-cceecccceEEEEEcCCCCCceeeEEEEeeee
Q 027334 65 HQRRVLLDGAGNPIVTLREKAMTAHHRWQVFRGESTEPQDLIFSAKT-SSVWNVRTKLDVFLANNTKEDVCDFRVKGSWF 143 (225)
Q Consensus 65 ~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~i~tikk-~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~~~ 143 (225)
.+++.|.. +|.++..-..-.. ..+.+-+..+ .+.||+.+=+ .+.-++|.-..+...... .=...|...|.+|
T Consensus 49 ~R~V~L~~-~~~~lvyA~S~~~--~~~l~~~l~~---~~~PIGk~l~~~~lE~~REI~~i~~~~~~-~L~~~f~~~~~~~ 121 (149)
T PF01947_consen 49 RREVWLKG-SGEPLVYAESWWP--IDRLDEYLRD---ADIPIGKILREHRLETRREILSIYIGESD-ELEKAFGCEGPFW 121 (149)
T ss_dssp EEEEEEEE-TTEEEEEEEEEEE--GGGS-HHHHH---SSS-HHHHHHHTT--BEEEEEEEEEEE---HHHHHHTSS-EEE
T ss_pred EEEEEEEE-CCeeEEEEEEeCc--HHHHHHhhhh---cCCCHHHHHHHcCcchhhhhhhccccccH-HHHHHhCCCCCcC
Confidence 34555555 7777776655221 1111111212 1346654322 222233433344433210 0001123568899
Q ss_pred ceeEEEEeCCCCceeEEEEeeee
Q 027334 144 ERSCTIYAGESSAIIAQMHKKHT 166 (225)
Q Consensus 144 ~~~~~I~~~~~~~~VA~V~kk~~ 166 (225)
.|+|.|+.+ |+++..|+..++
T Consensus 122 ~R~Y~i~~~--~~pl~~I~E~F~ 142 (149)
T PF01947_consen 122 SRTYRIIHN--GKPLMVITEVFP 142 (149)
T ss_dssp EEEEEEEET--TEEEEEEEEEEE
T ss_pred ccEEEEEEC--CEEEEEEEEECC
Confidence 999999999 899999998854
No 20
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=31.38 E-value=60 Score=27.46 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=9.4
Q ss_pred ceEEEEcCCCCcEEEEE
Q 027334 66 QRRVLLDGAGNPIVTLR 82 (225)
Q Consensus 66 ~~~~l~D~~G~~L~~I~ 82 (225)
-++.|+|++|+.+-++.
T Consensus 126 v~v~I~D~~G~vV~t~~ 142 (223)
T PRK12813 126 AELVVRDAAGAEVARET 142 (223)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 34556666666655543
No 21
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=31.37 E-value=2.1e+02 Score=22.67 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=34.8
Q ss_pred EeCCCEEEEcCCCCEEEEEEccC---CCcccceEE----EEcCC--CCcEEEEEeccc-cccceEEEEEcCC
Q 027334 38 ITDGNFVVTDTNGNILFKVKGVF---LTFIHQRRV----LLDGA--GNPIVTLREKAM-TAHHRWQVFRGES 99 (225)
Q Consensus 38 ~~~~~f~V~D~~G~~vf~V~g~~---~s~~~~~~~----l~D~~--G~~L~~I~~k~~-s~~~~~~i~~~~~ 99 (225)
|.++-|.|+|++|++++.+.-.. ......-.. +.|.+ |+.++.-|.... .+...|+..-+|.
T Consensus 2 ~~~E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~ 73 (180)
T cd03676 2 WRNELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGG 73 (180)
T ss_pred CcCcceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccC
Confidence 55678999999999998775322 111223333 33555 444444333322 3457787666543
No 22
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=31.14 E-value=99 Score=24.11 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=34.8
Q ss_pred EEEEcCCCCEEEEEEccCCC-----c-ccceEEEEcCCCCcEEEEEecc-ccccceEEEEE
Q 027334 43 FVVTDTNGNILFKVKGVFLT-----F-IHQRRVLLDGAGNPIVTLREKA-MTAHHRWQVFR 96 (225)
Q Consensus 43 f~V~D~~G~~vf~V~g~~~s-----~-~~~~~~l~D~~G~~L~~I~~k~-~s~~~~~~i~~ 96 (225)
+.|+|++|+.+.++.-+-.. + ..--..|.|.+|+.|+.-|... ..+...|++.-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~ 61 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSC 61 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccc
Confidence 36899999999998754322 0 1234577888898877544432 24557787643
No 23
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=26.91 E-value=2.2e+02 Score=24.47 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCEEEEcCCCCEEEEEEccC---------CCc--ccceEEEEcCCCCcEEEEEecc-ccccceEEEEEcC
Q 027334 41 GNFVVTDTNGNILFKVKGVF---------LTF--IHQRRVLLDGAGNPIVTLREKA-MTAHHRWQVFRGE 98 (225)
Q Consensus 41 ~~f~V~D~~G~~vf~V~g~~---------~s~--~~~~~~l~D~~G~~L~~I~~k~-~s~~~~~~i~~~~ 98 (225)
+...|+|++++++....-+- -.. ..-.+.|+|.+|+.|+.-|... ..+-..|++.-++
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~G 92 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCS 92 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCC
Confidence 48899999999999886421 110 1234578899998888877654 2355678776554
No 24
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=26.57 E-value=2.4e+02 Score=24.10 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=28.6
Q ss_pred ceeEEEEeCC-CCceeEEEEeeeeceeeeeeeceEEEEEeCCCcHHHHHHHH
Q 027334 144 ERSCTIYAGE-SSAIIAQMHKKHTVQSILIGKDNFAVTVYPNIDYAFIVALI 194 (225)
Q Consensus 144 ~~~~~I~~~~-~~~~VA~V~kk~~~~~~~~~~d~Y~l~V~pg~D~~lvlalv 194 (225)
-+||+++..+ .+.+|.+.-|- +.|.|.|++.--.-..-..|+|
T Consensus 198 vKNFql~~~~~~~~~~lqfGk~--------~~~~f~~d~~~Pls~~qAF~i~ 241 (246)
T PF01167_consen 198 VKNFQLVHPSDPDRIVLQFGKV--------GKDVFTMDFRYPLSPLQAFAIA 241 (246)
T ss_dssp TTEEEEEBTTBTTSESEEEEEE--------ETTEEEEEEETT-BHHHHHHHH
T ss_pred cceeEEEccCCCCeEEEEEEEe--------cCCEEEEEecCCCCHHHHHHHH
Confidence 4678887642 25778788776 8999999998666543333333
No 25
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=26.52 E-value=1.5e+02 Score=23.03 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=22.7
Q ss_pred CCcccceEEEEcCCCCcEEEEEeccccccce
Q 027334 61 LTFIHQRRVLLDGAGNPIVTLREKAMTAHHR 91 (225)
Q Consensus 61 ~s~~~~~~~l~D~~G~~L~~I~~k~~s~~~~ 91 (225)
.+ +--.+.|.|.+|+.+++-.+..++-.|.
T Consensus 45 gs-fl~~i~l~d~~g~vv~~~~~~~L~~lP~ 74 (133)
T PF07680_consen 45 GS-FLIGIQLKDSTGHVVLNWDQEKLSSLPK 74 (133)
T ss_pred Cc-eeeEEEEECCCCCEEEEeCHHHhhhCCh
Confidence 35 5567899999999999998877654443
No 26
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=25.57 E-value=2.4e+02 Score=24.14 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=33.7
Q ss_pred ccCCcCeEEEEEeeeeeEeCCCEEEEc-----CCCCEEEEEEccCCCcccceEEEEcCCCCc-EEEEE
Q 027334 21 YCCPYPVDLAIVRKVMTITDGNFVVTD-----TNGNILFKVKGVFLTFIHQRRVLLDGAGNP-IVTLR 82 (225)
Q Consensus 21 ~~~~~~~~l~vk~k~~s~~~~~f~V~D-----~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~-L~~I~ 82 (225)
-|....++|++... +.|.... .++...|.-.|+|-. ....++|.|.+|.. .|.+.
T Consensus 53 DC~GI~ttLtL~~D------gTY~L~~~Ylg~k~~~~~f~~~G~w~~-~~~~i~L~~~~g~~~yF~v~ 113 (234)
T PRK10523 53 DCEGIETSLFLEKD------GTWVMNERYLGAREEPSSFASYGTWAR-TADKLVLTDSKGEKSYYRAK 113 (234)
T ss_pred CCCCceEEEEEcCC------CCEEEEEEEcCCCCCCCceEeeEEEEe-cCCEEEEecCCCCEeEEEEC
Confidence 45667888888543 3343332 234667888887644 55677788877776 34433
No 27
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.27 E-value=1.9e+02 Score=23.84 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=23.2
Q ss_pred CCCc-cCCcCeEEEEEeeeeeEeCCCEEEEcC-CCCEEEEEEccC
Q 027334 18 SPQY-CCPYPVDLAIVRKVMTITDGNFVVTDT-NGNILFKVKGVF 60 (225)
Q Consensus 18 ~~~~-~~~~~~~l~vk~k~~s~~~~~f~V~D~-~G~~vf~V~g~~ 60 (225)
...| |++..-.|-|. |. .|.|+|. +|.++|.+....
T Consensus 72 T~dyLCSp~aNvy~Id-----Ft--rFkIRDldsg~VLFEIaKPp 109 (240)
T KOG4037|consen 72 TGDYLCSPEANVYKID-----FT--RFKIRDLDSGTVLFEIAKPP 109 (240)
T ss_pred cCCceeCcccceEEee-----eE--EEEEeeccCCcEEEEecCCC
Confidence 3344 66666555553 33 5888886 788888887654
No 28
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=24.35 E-value=95 Score=26.32 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=12.2
Q ss_pred cceEEEEcCCCCcEEEEE
Q 027334 65 HQRRVLLDGAGNPIVTLR 82 (225)
Q Consensus 65 ~~~~~l~D~~G~~L~~I~ 82 (225)
.-++.|+|++|+.+-++.
T Consensus 130 ~v~v~I~D~~G~vV~t~~ 147 (230)
T PRK12633 130 KVTVKVLDPSGAVVRTME 147 (230)
T ss_pred EEEEEEEeCCCCEEEEEe
Confidence 356677777777776664
No 29
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=24.24 E-value=85 Score=27.09 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=28.6
Q ss_pred CEEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEE
Q 027334 42 NFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVT 80 (225)
Q Consensus 42 ~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~ 80 (225)
=|.|.+++|..+|+=.|. |. +...-.|.+++|.+|+.
T Consensus 102 FF~V~~~~G~~~YTR~G~-F~-~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 102 FFKILMPDGTYAYTRDGS-FK-IDANGQLVTSNGYRLLP 138 (264)
T ss_pred EEEEEcCCCCeEEeeCCC-ee-ECCCCCEECCCCCEecc
Confidence 467888899888987776 45 55566789999999885
No 30
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=23.71 E-value=63 Score=22.67 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=10.8
Q ss_pred CEEEEcCCCCEEEEEE
Q 027334 42 NFVVTDTNGNILFKVK 57 (225)
Q Consensus 42 ~f~V~D~~G~~vf~V~ 57 (225)
+|.|+|++|+.|++-.
T Consensus 27 D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWS 42 (82)
T ss_dssp EEEEE-TT--EEEETT
T ss_pred EEEEECCCCCEEEEec
Confidence 7889999999999863
No 31
>PF15529 Toxin_49: Putative toxin 49
Probab=22.83 E-value=93 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=18.0
Q ss_pred EEeeeeeEeCCCEEEEcCCCCEEEEEEcc
Q 027334 31 IVRKVMTITDGNFVVTDTNGNILFKVKGV 59 (225)
Q Consensus 31 vk~k~~s~~~~~f~V~D~~G~~vf~V~g~ 59 (225)
++.+.-.+. +|++||++|.++-++++.
T Consensus 22 ~~~~~G~vt--~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 22 YRADPGRVT--SYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred EeccCCccc--ceeEEcCCCcEeEEeecc
Confidence 443333444 799999999966666654
No 32
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.14 E-value=1.3e+02 Score=25.88 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=28.3
Q ss_pred CEEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEE
Q 027334 42 NFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVT 80 (225)
Q Consensus 42 ~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~ 80 (225)
=|.|.+++|..+|+=.|. |. +...-.|.+++|.+|+.
T Consensus 102 fF~V~~~~G~~~yTR~G~-F~-~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 102 YFQIQLPDGETAYTRAGA-FN-RSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEEEEcCCCCEEEeeCCC-ee-ECCCCCEECCCCCEeEe
Confidence 367777889888987776 45 55566788999999985
No 33
>PF09101 Exotox-A_bind: Exotoxin A binding; InterPro: IPR015185 This domain is found in Pseudomonas aeruginosa exotoxin A, and is responsible for binding of the toxin to the alpha-2-macroglobulin receptor, with subsequent internalisation into endosomes. It adopts a thirteen-strand antiparallel beta jelly roll topology, which belongs to the concanavalin A-like lectins/glucanases fold superfamily []. ; PDB: 2Q5T_A 3Q9O_A 1IKP_A 1IKQ_A.
Probab=21.66 E-value=3.5e+02 Score=22.84 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=61.1
Q ss_pred eeEeCCCEEEEcCCCCEEEEEEccCCCccc--------------ceEEEEcCCCCcEEEEEeccccccceEEEEEcCCCC
Q 027334 36 MTITDGNFVVTDTNGNILFKVKGVFLTFIH--------------QRRVLLDGAGNPIVTLREKAMTAHHRWQVFRGESTE 101 (225)
Q Consensus 36 ~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~--------------~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~ 101 (225)
+.+.+++-.|.|++.-.-..-.|.+.. .+ -.+.|+.++|..-++-.||.-+|.-.|-|-.|...+
T Consensus 45 m~i~~~~~~ik~~d~~~si~t~g~~~t-vr~~~~~~~~~~~~gv~~~~~~~~n~~~~ysy~r~~~~~ainwlvpig~~~p 123 (262)
T PF09101_consen 45 MTINDEQNDIKDEDKGESIITIGEFAT-VRATRHYVNQDAPFGVIHLDITTENGTKTYSYNRKEGEFAINWLVPIGEDSP 123 (262)
T ss_dssp EEEETTTTSEEEETTTEEEEEETTTCE-EEEEES--STT-TT-CEEEEEEETTCEEEEEEE-SSSEEEEEEEEEECTTS-
T ss_pred EEecCCcchhhccccCceEEeecceEE-EEEecceecccCCcceeeccccCCCCceEEEEecccccEEEEEEeEcCCCCC
Confidence 456677778888755444445554433 22 245777888888888888876677789887776433
Q ss_pred CCceEE--EEEec-ceecccceEEEEEcCCCCCceeeEEEEeeeeceeEEEEeCC
Q 027334 102 PQDLIF--SAKTS-SVWNVRTKLDVFLANNTKEDVCDFRVKGSWFERSCTIYAGE 153 (225)
Q Consensus 102 ~~~~i~--tikk~-~~~~~k~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~ 153 (225)
+.-+++ ++... .+.-..+-|++.+.+. .-..|+..|| -+|.|+..+
T Consensus 124 a~iki~i~el~~~~~i~~~~~lysi~l~~~---~l~~~k~~~n---V~F~Vt~~e 172 (262)
T PF09101_consen 124 ASIKISIDELDQQRNIIEVPKLYSIDLDNQ---TLEQWKLQGN---VSFSVTRPE 172 (262)
T ss_dssp SEEEEEEEEE-TTSEEECE-EEEEEE--HH---HHHHCCCCCE---EEEEECCTT
T ss_pred cceEEEhhHhhccCceeecCceeEEecChH---HHHHHhhcCc---eEEEEEecc
Confidence 332332 12211 1222334566766652 1234666664 457777764
No 34
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=21.53 E-value=2.5e+02 Score=19.62 Aligned_cols=10 Identities=60% Similarity=0.684 Sum_probs=5.5
Q ss_pred EEEEcCCCCE
Q 027334 43 FVVTDTNGNI 52 (225)
Q Consensus 43 f~V~D~~G~~ 52 (225)
.+|.|++|++
T Consensus 24 v~v~D~~Gnp 33 (92)
T smart00634 24 ATVTDANGNP 33 (92)
T ss_pred EEEECCCCCC
Confidence 4556666553
No 35
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.59 E-value=1.7e+02 Score=24.73 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=12.3
Q ss_pred cceEEEEcCCCCcEEEEEe
Q 027334 65 HQRRVLLDGAGNPIVTLRE 83 (225)
Q Consensus 65 ~~~~~l~D~~G~~L~~I~~ 83 (225)
.-++.|+|++|+.+.++.-
T Consensus 127 ~vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 127 NVTVTITDSAGQVVRTIDL 145 (225)
T ss_pred EEEEEEEcCCCCEEEEEec
Confidence 3556777777777766543
No 36
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=20.31 E-value=1.5e+02 Score=22.70 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCCEEEEEEccCCC-------cccceEEEEcCCCCcEEEEEe
Q 027334 49 NGNILFKVKGVFLT-------FIHQRRVLLDGAGNPIVTLRE 83 (225)
Q Consensus 49 ~G~~vf~V~g~~~s-------~~~~~~~l~D~~G~~L~~I~~ 83 (225)
+|..++.++|.+-. +-.=+++|+|.+|+++++-.-
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 68888888886532 123478999999999965433
Done!