Query 027334
Match_columns 225
No_of_seqs 117 out of 631
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 2.5E-46 8.7E-51 313.1 20.2 203 3-206 14-216 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.2 1.7E-05 5.9E-10 65.3 13.0 99 48-152 34-136 (217)
3 2fim_A Tubby related protein 1 66.1 58 0.002 27.2 12.1 105 74-182 36-160 (276)
4 3c5n_A Tubby-related protein 1 60.5 69 0.0024 26.2 12.2 102 77-182 15-136 (246)
5 3u88_M Histone-lysine N-methyl 49.8 7.6 0.00026 25.3 1.6 24 179-202 28-51 (75)
6 2v2f_A Penicillin binding prot 43.7 14 0.00047 19.1 1.9 14 43-56 7-20 (26)
7 4h3o_A Lectin; cadmium, plant 34.9 79 0.0027 21.9 5.4 15 66-80 61-75 (105)
8 2dho_A Isopentenyl-diphosphate 32.2 1E+02 0.0035 24.6 6.3 57 40-96 26-93 (235)
9 3c12_A FLGD, flagellar protein 28.2 37 0.0013 24.9 2.8 15 43-57 43-57 (138)
10 2pny_A Isopentenyl-diphosphate 26.9 1E+02 0.0034 24.9 5.4 57 40-96 37-104 (246)
11 2fkb_A Putative nudix hydrolas 26.5 1.5E+02 0.0053 21.7 6.2 56 38-94 7-69 (180)
12 3c5n_A Tubby-related protein 1 25.3 1.5E+02 0.0051 24.2 6.1 44 144-195 198-242 (246)
13 3osv_A Flagellar basal-BODY RO 22.7 52 0.0018 24.2 2.6 16 42-57 40-55 (138)
14 2vnl_A Bifunctional tail prote 22.3 99 0.0034 23.4 4.0 56 21-83 49-104 (151)
15 2fim_A Tubby related protein 1 21.2 1.9E+02 0.0066 24.0 6.1 42 144-193 222-266 (276)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=2.5e-46 Score=313.13 Aligned_cols=203 Identities=60% Similarity=1.074 Sum_probs=151.9
Q ss_pred CCCCCCCCCCeeEEeCCCccCCcCeEEEEEeeeeeEeCCCEEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEEEE
Q 027334 3 QQPSLIGGGAAVAVISPQYCCPYPVDLAIVRKVMTITDGNFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVTLR 82 (225)
Q Consensus 3 ~~~~~~~p~~p~~vv~~~~~~~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~I~ 82 (225)
..|.|.||++|++||+++||++++++|+||||.+++++++|+|+|++|+.+|+|+++.++ ++.++.|+|++|++|++|+
T Consensus 14 ~~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~-~~~~~~l~D~~G~~l~~i~ 92 (217)
T 1zxu_A 14 GPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFG-LHDKRVLLDGSGTPVVTLR 92 (217)
T ss_dssp ----------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTT-CCSEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccC-CCCEEEEECCCCCEEEEEE
Confidence 345678889999999999999999999999999999988999999999999999999889 9999999999999999999
Q ss_pred eccccccceEEEEEcCCCCCCceEEEEEecceecccceEEEEEcCCCCCceeeEEEEeeeeceeEEEEeCCCCceeEEEE
Q 027334 83 EKAMTAHHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLANNTKEDVCDFRVKGSWFERSCTIYAGESSAIIAQMH 162 (225)
Q Consensus 83 ~k~~s~~~~~~i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~~~VA~V~ 162 (225)
+|.++++++|++|++++.+.++++|+||+++.+.++++++|++.++.+++.+.|+|+|+|++++|+|+++++|++||+|+
T Consensus 93 rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~ 172 (217)
T 1zxu_A 93 EKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMH 172 (217)
T ss_dssp C------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEE
T ss_pred ccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEE
Confidence 99999999999999886444468999998754457899999998755445689999999999999999986568999999
Q ss_pred eeeeceeeeeeeceEEEEEeCCCcHHHHHHHHHHhhhhhhcCCC
Q 027334 163 KKHTVQSILIGKDNFAVTVYPNIDYAFIVALIVILDEINHASSS 206 (225)
Q Consensus 163 kk~~~~~~~~~~d~Y~l~V~pg~D~~lvlalviiiD~~~~~~~~ 206 (225)
|+|++++++.++|+|.|+|.|++|.+|++|+|++||++.+++++
T Consensus 173 kk~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 173 RKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216 (217)
T ss_dssp EC--------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC----
T ss_pred eeeeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhccC
Confidence 99998889999999999999999999999999999999998764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.25 E-value=1.7e-05 Score=65.29 Aligned_cols=99 Identities=15% Similarity=0.279 Sum_probs=68.0
Q ss_pred CCCCEEEEEEccCCCcccc-eEEEEcCCCCcEEEEEeccccccceEEEEEcCCCCCCceEEEEEecceecccceEEEEEc
Q 027334 48 TNGNILFKVKGVFLTFIHQ-RRVLLDGAGNPIVTLREKAMTAHHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLA 126 (225)
Q Consensus 48 ~~G~~vf~V~g~~~s~~~~-~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~ 126 (225)
..+...++|+.+.++ +.. .++|+|.+|+.++.++.+.++++.++.|++.. ++++++|+++ .+.+.++|+++..
T Consensus 34 ~~~~~~l~vkqk~~~-~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~----G~~l~~i~rk-~~~~~~~~~v~~~ 107 (217)
T 1zxu_A 34 APYPIDMAIVRKMMS-LTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGS----GTPVVTLREK-MVSMHDRWQVFRG 107 (217)
T ss_dssp CSSCEEEEEECC------CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTT----SCEEEEEEC-------CEEEEEET
T ss_pred CCCCcEEEEEEEEeE-eeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCC----CCEEEEEEcc-ccccCcEEEEEcC
Confidence 358899999999888 766 99999999999999999988888999998876 4799999986 4567899999876
Q ss_pred CCCCCceeeEEEEee--e-eceeEEEEeC
Q 027334 127 NNTKEDVCDFRVKGS--W-FERSCTIYAG 152 (225)
Q Consensus 127 ~~~~~~~~~~~v~G~--~-~~~~~~I~~~ 152 (225)
+....+.+.+.|+-. + +...|.|...
T Consensus 108 ~~~~~~~~i~~vrk~~~~~~~~~~~V~~~ 136 (217)
T 1zxu_A 108 GSTDQRDLLYTVKRSSMLQLKTKLDVFLG 136 (217)
T ss_dssp TCCCGGGEEEEEEC-------CCEEEEET
T ss_pred CCCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence 532112346677643 2 4567888865
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=66.09 E-value=58 Score=27.24 Aligned_cols=105 Identities=7% Similarity=0.083 Sum_probs=57.8
Q ss_pred CCCcEEEEEecc--c--cccceEEEEEcCCCCCCceEEEEEecceecccceEEEEEcCC-C--CCceeeEEEEeeeecee
Q 027334 74 AGNPIVTLREKA--M--TAHHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLANN-T--KEDVCDFRVKGSWFERS 146 (225)
Q Consensus 74 ~G~~L~~I~~k~--~--s~~~~~~i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~~~-~--~~~~~~~~v~G~~~~~~ 146 (225)
++...+.|+|.. + .+.++|.+|..++ .+..+...||++- .-...|.|++... - .++...=.++-|+++..
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~--~~~fLLaarK~k~-~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtk 112 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKR-SKTANYLISIDPTNLSRGGENFIGKLRSNLLGNR 112 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECSS--SCEEEEEEEECTT-CSSCEEEEESCTTC------CEEEEEEECSSSSE
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeCC--CCEEEEEEEeccC-CCCceEEEEecchhcccCCceEEEEEEEccCCCE
Confidence 455567776532 2 3458999998642 2345666776532 2245788876532 1 12223337889999999
Q ss_pred EEEEeCCC-------------CceeEEEEeeeeceeeeeeeceEEEEEe
Q 027334 147 CTIYAGES-------------SAIIAQMHKKHTVQSILIGKDNFAVTVY 182 (225)
Q Consensus 147 ~~I~~~~~-------------~~~VA~V~kk~~~~~~~~~~d~Y~l~V~ 182 (225)
|+|++... ..++|.|.-+.+... ..+.....+.|.
T Consensus 113 F~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg-~~gPR~m~v~iP 160 (276)
T 2fim_A 113 FTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVIIP 160 (276)
T ss_dssp EEEECSSBCGGGCTTSCGGGBCCEEEEEEEC----------CCEEEEEE
T ss_pred EEEECCCCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEec
Confidence 99998610 177888887754211 234556666663
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=60.47 E-value=69 Score=26.25 Aligned_cols=102 Identities=7% Similarity=0.078 Sum_probs=58.3
Q ss_pred cEEEEEecc--c--cccceEEEEEcCCCCCCceEEEEEecceecccceEEEEEcCC-C--CCceeeEEEEeeeeceeEEE
Q 027334 77 PIVTLREKA--M--TAHHRWQVFRGESTEPQDLIFSAKTSSVWNVRTKLDVFLANN-T--KEDVCDFRVKGSWFERSCTI 149 (225)
Q Consensus 77 ~L~~I~~k~--~--s~~~~~~i~~~~~~~~~~~i~tikk~~~~~~k~~~~V~~~~~-~--~~~~~~~~v~G~~~~~~~~I 149 (225)
.-+.|+|.. + .+.++|.+|..++ .+..+...||++- .-...|.|++..+ - .++...=.++-|+++..|+|
T Consensus 15 ~qC~I~R~k~g~~~~~yp~y~l~~~~~--~~~fLlaark~~~-~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~i 91 (246)
T 3c5n_A 15 VRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKR-SKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTV 91 (246)
T ss_dssp EEEEEEECC------CCCEEEEEESSS--SCCEEEEEEECTT-CSSCEEEEESCTTC------CEEEEEEECSSSSEEEE
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeCC--CcEEEEeeeeccC-CCCceEEEEeCccccccCCceEEEEEEEccCCCEEEE
Confidence 346776522 2 2458999988653 1235666676521 2235788876532 1 12223337889999999999
Q ss_pred EeCC-------------CCceeEEEEeeeeceeeeeeeceEEEEEe
Q 027334 150 YAGE-------------SSAIIAQMHKKHTVQSILIGKDNFAVTVY 182 (225)
Q Consensus 150 ~~~~-------------~~~~VA~V~kk~~~~~~~~~~d~Y~l~V~ 182 (225)
++.. ...++|.|.-+.+... ..+.....+.|.
T Consensus 92 yD~g~~p~~~~s~~~~~~r~el~~v~Ye~n~l~-~~gPR~m~v~iP 136 (246)
T 3c5n_A 92 FDNGQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVIIP 136 (246)
T ss_dssp ECSCBCGGGCTTSCGGGBCCEEEEEEECCCCCC----CCCEEEEEE
T ss_pred ECCCCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEec
Confidence 9861 0178888887755211 235556666663
No 5
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=49.80 E-value=7.6 Score=25.27 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=18.4
Q ss_pred EEEeCCCcHHHHHHHHHHhhhhhh
Q 027334 179 VTVYPNIDYAFIVALIVILDEINH 202 (225)
Q Consensus 179 l~V~pg~D~~lvlalviiiD~~~~ 202 (225)
|-+.||.|.+|.++.+|--....-
T Consensus 28 lgvgpGFDAALqvSa~Ig~nl~kf 51 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIGTNLRRF 51 (75)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHHHHHHHH
Confidence 467899999999988876655444
No 6
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=43.65 E-value=14 Score=19.09 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=10.8
Q ss_pred EEEEcCCCCEEEEE
Q 027334 43 FVVTDTNGNILFKV 56 (225)
Q Consensus 43 f~V~D~~G~~vf~V 56 (225)
-.|||.+|+++..+
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 36888888888776
No 7
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=34.93 E-value=79 Score=21.88 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=9.0
Q ss_pred ceEEEEcCCCCcEEE
Q 027334 66 QRRVLLDGAGNPIVT 80 (225)
Q Consensus 66 ~~~~l~D~~G~~L~~ 80 (225)
..++|+|.+|+++..
T Consensus 61 GnLvL~d~~~~~vWs 75 (105)
T 4h3o_A 61 GNFVVYDSSGRSLWA 75 (105)
T ss_dssp SCEEEECTTCCEEEE
T ss_pred ccEEEECCCcEEEEE
Confidence 455666666666543
No 8
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=32.22 E-value=1e+02 Score=24.61 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCCEEEEcCCCCEEEEEEccCC--------Cccc--ceEEEEcCCCCcEEEEEecc-ccccceEEEEE
Q 027334 40 DGNFVVTDTNGNILFKVKGVFL--------TFIH--QRRVLLDGAGNPIVTLREKA-MTAHHRWQVFR 96 (225)
Q Consensus 40 ~~~f~V~D~~G~~vf~V~g~~~--------s~~~--~~~~l~D~~G~~L~~I~~k~-~s~~~~~~i~~ 96 (225)
.+.+.|+|++|+++..+.-... ..+. -.+.++|.+|+.|+.-|... ..+...|++--
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~ 93 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTC 93 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSE
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEecc
Confidence 4479999999999999854210 1011 23356888898776544332 23456787543
No 9
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=28.24 E-value=37 Score=24.95 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=7.3
Q ss_pred EEEEcCCCCEEEEEE
Q 027334 43 FVVTDTNGNILFKVK 57 (225)
Q Consensus 43 f~V~D~~G~~vf~V~ 57 (225)
..|+|++|++|.+++
T Consensus 43 v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 43 FEITDANGTFVKQLS 57 (138)
T ss_dssp EEEECSSCCEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 444555555554444
No 10
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=26.94 E-value=1e+02 Score=24.91 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=34.6
Q ss_pred CCCEEEEcCCCCEEEEEEccCC--------Cccc--ceEEEEcCCCCcEEEEEecc-ccccceEEEEE
Q 027334 40 DGNFVVTDTNGNILFKVKGVFL--------TFIH--QRRVLLDGAGNPIVTLREKA-MTAHHRWQVFR 96 (225)
Q Consensus 40 ~~~f~V~D~~G~~vf~V~g~~~--------s~~~--~~~~l~D~~G~~L~~I~~k~-~s~~~~~~i~~ 96 (225)
.+.+.|+|++|+++..+.-... ..+. -.+.|+|.+|+.|+.-|... ..+...|++--
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~ 104 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSC 104 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSE
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEecc
Confidence 4479999999999999854310 1011 23357888898766544322 23456786543
No 11
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=26.51 E-value=1.5e+02 Score=21.66 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=33.5
Q ss_pred EeCCCEEEEcCCCCEEEEEEccC------CCcccceEEEEcCCCCcEEEEEecccc-ccceEEE
Q 027334 38 ITDGNFVVTDTNGNILFKVKGVF------LTFIHQRRVLLDGAGNPIVTLREKAMT-AHHRWQV 94 (225)
Q Consensus 38 ~~~~~f~V~D~~G~~vf~V~g~~------~s~~~~~~~l~D~~G~~L~~I~~k~~s-~~~~~~i 94 (225)
...+-+.|+|.+|+.+....-.. .. ..-...+.|.+|+.|+.-|...-. +...|++
T Consensus 7 ~~~E~~~i~d~~~~~~g~~~r~~~~~~~~~~-~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 7 ASTEWVDIVNEENEVIAQASREQMRAQCLRH-RATYIVVHDGMGKILVQRRTETKDFLPGMLDA 69 (180)
T ss_dssp -CCCEEEEECTTSCEEEEEEHHHHHHHTCCE-EEEEEEEECSSSCEEEEEECSSCSSSTTCEES
T ss_pred CCCeeEEEECCCCCEeeEEEHHHhhccCcee-eEEEEEEECCCCEEEEEECCCCCccCCCcEEe
Confidence 34557899999999999886321 11 123446678888877643332211 2456854
No 12
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=25.29 E-value=1.5e+02 Score=24.21 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=29.7
Q ss_pred ceeEEEEeCC-CCceeEEEEeeeeceeeeeeeceEEEEEeCCCcHHHHHHHHH
Q 027334 144 ERSCTIYAGE-SSAIIAQMHKKHTVQSILIGKDNFAVTVYPNIDYAFIVALIV 195 (225)
Q Consensus 144 ~~~~~I~~~~-~~~~VA~V~kk~~~~~~~~~~d~Y~l~V~pg~D~~lvlalvi 195 (225)
-.||+++..+ .+.+|.+.-|. ++|.|.+++.-..-..-..|+|+
T Consensus 198 vKNFqLv~~~~~~~ivlqFGKv--------~~d~FtmD~~yPlS~~QAFaI~L 242 (246)
T 3c5n_A 198 VKNFQIVHADDPDYIVLQFGRV--------AEDAFTLDYRYPLCALQAFAIAL 242 (246)
T ss_dssp TTCEEEEBTTBTTSCSEEEEEE--------ETTEEEEEEETTCCHHHHHHHHH
T ss_pred cceEEEEecCCCCEEEEEEEEe--------cCCeEEEEecCCCCHHHHHHHHH
Confidence 3568888642 24677888777 89999999987766433333333
No 13
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=22.67 E-value=52 Score=24.15 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=9.2
Q ss_pred CEEEEcCCCCEEEEEE
Q 027334 42 NFVVTDTNGNILFKVK 57 (225)
Q Consensus 42 ~f~V~D~~G~~vf~V~ 57 (225)
...|+|++|++|.+++
T Consensus 40 ~v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 40 WVNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 3556666666666554
No 14
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=22.31 E-value=99 Score=23.38 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=29.9
Q ss_pred ccCCcCeEEEEEeeeeeEeCCCEEEEcCCCCEEEEEEccCCCcccceEEEEcCCCCcEEEEEe
Q 027334 21 YCCPYPVDLAIVRKVMTITDGNFVVTDTNGNILFKVKGVFLTFIHQRRVLLDGAGNPIVTLRE 83 (225)
Q Consensus 21 ~~~~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~~~~~l~D~~G~~L~~I~~ 83 (225)
|..++.....-......+....|-|+ +|+++-.+... ++...++|.+|..++.+-.
T Consensus 49 y~~n~~g~~~qv~qPivin~ag~fv~--ng~l~~~vt~~-----ghsmavYd~~Gaq~f~iP~ 104 (151)
T 2vnl_A 49 YIENEDGSHVQITQPLIINAAGKIVY--NGQLVKIVTVQ-----GHSMAIYDANGSQVDYIAN 104 (151)
T ss_dssp EEECTTSCEEEECSSEEECTTSCEEE--TTEECCEECCS-----SCEEEEECTTSCEEEEESC
T ss_pred EEecCCCceeeeecceeeecCCceee--CCEEEEEeccC-----CCcceEEecCCCceeeecc
Confidence 33333333333344555554455553 35553333322 3457788888888887754
No 15
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=21.23 E-value=1.9e+02 Score=23.98 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=29.1
Q ss_pred ceeEEEEeCC-CCceeEEEEeeeeceeeeeeeceEEEEEeCCCcH--HHHHHH
Q 027334 144 ERSCTIYAGE-SSAIIAQMHKKHTVQSILIGKDNFAVTVYPNIDY--AFIVAL 193 (225)
Q Consensus 144 ~~~~~I~~~~-~~~~VA~V~kk~~~~~~~~~~d~Y~l~V~pg~D~--~lvlal 193 (225)
-.||+++..+ .+.+|.+.-|- +.|.|.+++.-..-. +|.+||
T Consensus 222 vKNFQLv~~~d~~~ivlQFGKv--------~~d~FtmD~~yPlS~~QAFaI~L 266 (276)
T 2fim_A 222 VKNFQIVHADDPDYIVLQFGRV--------AEDAFTLDYRYPLCALQAFAIAL 266 (276)
T ss_dssp TTCEEEECTTCTTSCSEEEEEE--------ETTEEEEEECTTCCHHHHHHHHH
T ss_pred cceEEEEecCCCCEEEEEEeec--------CCCeEEEEecCCCCHHHHHHHHH
Confidence 3568888642 24677888777 899999999876654 454444
Done!