BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027335
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 147/201 (73%), Positives = 166/201 (82%), Gaps = 1/201 (0%)
Query: 25 ATFDIRNNCPYTVWAAAVPGGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRC 84
ATF+I N C YTVWAAAVPGGGR+L++GQ+W +NVN GT RIW RT C FDG+GRGRC
Sbjct: 1 ATFEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSGRGRC 60
Query: 85 QTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVI 144
QTGDCGG+L C AYG+PPNTLAEFALNQF NLDF DIS +DGFNVPM+FS SGGC R I
Sbjct: 61 QTGDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSGGC-RGI 119
Query: 145 RCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPK 204
RC ADI QCP L+ PGGCN PC VFKT+++CCNSG C PT +S+FFK CPDAYSYPK
Sbjct: 120 RCAADINGQCPGALKAPGGCNNPCTVFKTDQYCCNSGACSPTDYSQFFKRNCPDAYSYPK 179
Query: 205 DDATSVFTCPGGTNYKVVFCP 225
DD T+ FTCPGGTNY+VVFCP
Sbjct: 180 DDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 296 bits (757), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 163/203 (80%), Gaps = 7/203 (3%)
Query: 25 ATFDIRNNCPYTVWAAAVPGGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRC 84
ATFDI N C YTVWAAA PGGGRRLD GQ+W + VNPGT ARIW RT+C FD GRG+C
Sbjct: 1 ATFDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANGRGKC 60
Query: 85 QTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVI 144
+TGDC GLL+CQ YGSPPNTLAEFALNQ NLD+IDIS +DGFN+PM+FS GC R I
Sbjct: 61 ETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFS----GC-RGI 115
Query: 145 RCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCCNS--GKCGPTKFSRFFKERCPDAYSY 202
+C+ DI QCP+EL+ PGGCN PC VFKT E+CC G CGPT +S+FFK+RCPDAYSY
Sbjct: 116 QCSVDINGQCPSELKAPGGCNNPCTVFKTNEYCCTDGPGSCGPTTYSKFFKDRCPDAYSY 175
Query: 203 PKDDATSVFTCPGGTNYKVVFCP 225
P+DD TS+FTCP GTNYKV FCP
Sbjct: 176 PQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 283 bits (725), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 160/205 (78%), Gaps = 4/205 (1%)
Query: 25 ATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGR 83
AT ++RNNCPYTVWAA+ P GGGRRLDRGQ W +N GTK AR+W RTNC F+ AGRG
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGT 60
Query: 84 CQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSV--SGGCN 141
CQTGDCGG+LQC +G PPNTLAE+AL+QF LDF DIS +DGFN+PM F+ SGG
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKC 120
Query: 142 RVIRCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYS 201
I CTA+I +CP ELRVPGGCN PC F +++CC G CGPT FS+FFK+RCPDAYS
Sbjct: 121 HAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQGPCGPTFFSKFFKQRCPDAYS 180
Query: 202 YPKDDATSVFTCPGG-TNYKVVFCP 225
YP+DD TS FTCPGG TNY+V+FCP
Sbjct: 181 YPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 280 bits (715), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/205 (65%), Positives = 159/205 (77%), Gaps = 4/205 (1%)
Query: 25 ATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGR 83
AT ++RNNCPYTVWAA+ P GGGRRL+RGQ W +N GTK ARIW RT C F+ AGRG
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGT 60
Query: 84 CQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSV--SGGCN 141
CQTGDCGG+LQC +G PPNTLAE+AL+QF NLDF DIS +DGFN+PM F+ SGG
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKC 120
Query: 142 RVIRCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYS 201
I CTA+I +CP L+VPGGCN PC F +++CC G CGPT+ S+FFK+RCPDAYS
Sbjct: 121 HAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYS 180
Query: 202 YPKDDATSVFTCPGG-TNYKVVFCP 225
YP+DD TS FTCPGG TNY+VVFCP
Sbjct: 181 YPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/206 (64%), Positives = 157/206 (76%), Gaps = 4/206 (1%)
Query: 24 AATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRG 82
+ F++ NNCPYTVWAAA P GGGRRL+RGQ+W PGTK ARIW RTNC FDGAGRG
Sbjct: 1 SGVFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRG 60
Query: 83 RCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNR 142
CQTGDCGG+L+C+ +G PPNTLAE+ALNQF NLDF DIS IDGFN+PM F G +
Sbjct: 61 WCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGK 120
Query: 143 V--IRCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAY 200
I+CTA+I +CP LRVPGGCN PC F +++CC G CGPT+ SR+FK+RCPDAY
Sbjct: 121 CHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTELSRWFKQRCPDAY 180
Query: 201 SYPKDDATSVFTCPGG-TNYKVVFCP 225
SYP+DD TS FTC T+YKV+FCP
Sbjct: 181 SYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 267 bits (682), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/206 (64%), Positives = 154/206 (74%), Gaps = 5/206 (2%)
Query: 25 ATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGR 83
A F + N CP+TVWAA+VP GGGR+L+RG++W + GT AARIWART C+FD +GRG
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 60
Query: 84 CQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG-GCNR 142
C+TGDCGG+LQC YG PNTLAE+AL QF NLDF DIS IDGFNVPM F G GC+R
Sbjct: 61 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 120
Query: 143 VIRCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCC---NSGKCGPTKFSRFFKERCPDA 199
RC D+ +CP ELR G CN CPVFK +E+CC + C PT +SR+FK +CPDA
Sbjct: 121 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 180
Query: 200 YSYPKDDATSVFTCPGGTNYKVVFCP 225
YSYPKDDATS FTCP GTNYKVVFCP
Sbjct: 181 YSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/208 (62%), Positives = 158/208 (75%), Gaps = 10/208 (4%)
Query: 25 ATFDIRNNCPYTVWAAAVPG------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG 78
ATF+I N C YTVWAAA G GGR+L+ G++W +NV PGTK +IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 79 AGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
+GRG C+TGDCGGLLQC+ +G PP TLAEF+LNQ+ D+IDISNI GFNVPM+FS +
Sbjct: 61 SGRGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTR 119
Query: 139 GCNRVIRCTADIVRQCPNELRVP-GGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCP 197
GC R +RC ADIV QCP +L+ P GGCN C VF+T E+CC +GKCGPT++SRFFK CP
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 DAYSYPKDDATSVFTCPGGTNYKVVFCP 225
DA+SY D T+V TCPG +NY+V FCP
Sbjct: 179 DAFSYVLDKPTTV-TCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/208 (61%), Positives = 157/208 (75%), Gaps = 10/208 (4%)
Query: 25 ATFDIRNNCPYTVWAAAVPG------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG 78
ATF+I N C YTVWAAA G GGR+L+ G++W +NV PGTK +IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 79 AGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
+G G C+TGDCGGLL+C+ +G PP TLAEF+LNQ+ D+IDISNI GFNVPM+FS +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTR 119
Query: 139 GCNRVIRCTADIVRQCPNELRVP-GGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCP 197
GC R +RC ADIV QCP +L+ P GGCN C VF+T E+CC +GKCGPT++SRFFK CP
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 DAYSYPKDDATSVFTCPGGTNYKVVFCP 225
DA+SY D T+V TCPG +NY+V FCP
Sbjct: 179 DAFSYVLDKPTTV-TCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 253 bits (645), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 126/208 (60%), Positives = 156/208 (75%), Gaps = 10/208 (4%)
Query: 25 ATFDIRNNCPYTVWAAAVPG------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG 78
ATF+I N C YTVWAAA G GGR+L+ G++W +NV PGT +IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 79 AGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
+G G C+TGDCGGLL+C+ +G PP TLAEF+LNQ+ D+IDISNI GFNVPM+FS +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTR 119
Query: 139 GCNRVIRCTADIVRQCPNELRVP-GGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCP 197
GC R +RC ADIV QCP +L+ P GGCN C VF+T E+CC +GKCGPT++SRFFK CP
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 DAYSYPKDDATSVFTCPGGTNYKVVFCP 225
DA+SY D T+V TCPG +NY+V FCP
Sbjct: 179 DAFSYVLDKPTTV-TCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 252 bits (643), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/208 (60%), Positives = 155/208 (74%), Gaps = 10/208 (4%)
Query: 25 ATFDIRNNCPYTVWAAAVPG------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG 78
ATF+I N C YTVWAAA G GGR+L+ G++W +NV PGT +IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 79 AGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
+G G C+TGDCGGLL+C+ +G PP TLAEF+LNQ+ D+IDISNI GFNVPM FS +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTR 119
Query: 139 GCNRVIRCTADIVRQCPNELRVP-GGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCP 197
GC R +RC ADIV QCP +L+ P GGCN C VF+T E+CC +GKCGPT++SRFFK CP
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 DAYSYPKDDATSVFTCPGGTNYKVVFCP 225
DA+SY D T+V TCPG +NY+V FCP
Sbjct: 179 DAFSYVLDKPTTV-TCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 252 bits (643), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/208 (60%), Positives = 155/208 (74%), Gaps = 10/208 (4%)
Query: 25 ATFDIRNNCPYTVWAAAVPG------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG 78
ATF+I N C YTVWAAA G GGR+L+ G++W +NV PGT +IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 79 AGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
+G G C+TGDCGGLL+C+ +G PP TLAEF+LNQ+ D+IDISNI GFNVPM FS +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTR 119
Query: 139 GCNRVIRCTADIVRQCPNELRVP-GGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCP 197
GC R +RC ADIV QCP +L+ P GGCN C VF+T E+CC +GKCGPT++SRFFK CP
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 DAYSYPKDDATSVFTCPGGTNYKVVFCP 225
DA+SY D T+V TCPG +NY+V FCP
Sbjct: 179 DAFSYVLDKPTTV-TCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/208 (60%), Positives = 153/208 (73%), Gaps = 10/208 (4%)
Query: 25 ATFDIRNNCPYTVWAAAVPG------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG 78
ATF+I N C YTVWAAA G GGR+L+ G++W +NV PGT +IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 79 AGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
+G G C+TGDCGGLL+C+ +G PP TLAEF+LNQ D+IDISNI GFNVPM FS +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQ-XGKDYIDISNIKGFNVPMNFSPTTR 119
Query: 139 GCNRVIRCTADIVRQCPNELRVP-GGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCP 197
GC R +RC ADIV QCP +L+ P GGCN C VF+T E+CC +GKCGPT+ SRFFK CP
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEXSRFFKRLCP 178
Query: 198 DAYSYPKDDATSVFTCPGGTNYKVVFCP 225
DA+SY D T+V TCPG +NY+V FCP
Sbjct: 179 DAFSYVLDKPTTV-TCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 244 bits (622), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 125/208 (60%), Positives = 151/208 (72%), Gaps = 10/208 (4%)
Query: 25 ATFDIRNNCPYTVWAAAVPG------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG 78
ATF+I N C TVWAAA G GGR+L+ G++W +NV PGT +IWART+C FD
Sbjct: 1 ATFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 79 AGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
+G G C+TGDCGGLL+C+ +G PP TLAEF+LNQ D IDISNI GFNVPM FS +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQ-XGKDXIDISNIKGFNVPMNFSPTTR 119
Query: 139 GCNRVIRCTADIVRQCPNELRVP-GGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCP 197
GC R +RC ADIV QCP +L+ P GGCN C VF+T E+CC +GKCGPT+ SRFFK CP
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEXSRFFKRLCP 178
Query: 198 DAYSYPKDDATSVFTCPGGTNYKVVFCP 225
DA+SY D T+V TCPG +NY+V FCP
Sbjct: 179 DAFSYVLDKPTTV-TCPGSSNYRVTFCP 205
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 108/223 (48%), Gaps = 23/223 (10%)
Query: 25 ATFDIRNNCPYTVWAAAVPGG--------GRRLDRGQNWPLNVNPGTKAARIWARTNCQF 76
AT +NNCPY VW + G L ++ L+ P R WART C
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDT-PVPWNGRFWARTGCST 59
Query: 77 DGAGRGRCQTGDCG-GLLQCQAYGS-PPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFS 134
D +G+ C T DC G + C G+ PP TLAEF + DF D+S +DGFN+PM +
Sbjct: 60 DASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVT 119
Query: 135 SVSG-GCNRVIRCTADIVRQCPNELRVPG------GCNGPCPVFKTEEHCCNSGK----- 182
G G + C A++ CP+EL+ G C C F T ++CC +
Sbjct: 120 PQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179
Query: 183 CGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 225
C PT +S F CPDAYSY DD FTC GG NY + FCP
Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 105/222 (47%), Gaps = 21/222 (9%)
Query: 25 ATFDIRNNCPYTVWAAAVPGGGRRLDRGQNWPLNVN-------PGTKAARIWARTNCQFD 77
A NNCP TVW + G + + L P + R W RT C D
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 78 GAGRGRCQTGDCG-GLLQCQAYGS-PPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSS 135
AG+ C+T DCG G + C G+ PP TL E + D+ D+S +DGFN+PM +
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 136 VSG-GCNRVIRCTADIVRQCPNELRVPGG------CNGPCPVFKTEEHCCNS-----GKC 183
G G + C A++ + CP L+V C C F ++CC C
Sbjct: 121 QGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETC 180
Query: 184 GPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 225
PT++S F+++CP AYSY DD S FTC GG +Y + FCP
Sbjct: 181 PPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 25 ATFDIRNNCPYTVWAA-----AVPGGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGA 79
A I N C +TVW A A GGG L G +W L+ P + IW RT C FD A
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLD-TPVIGSQYIWGRTGCSFDRA 59
Query: 80 GRGRCQTGDCGG-LLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG 138
G+GRCQTGDCGG L C + P T+AE ++ Q N + S + GFNVPM SG
Sbjct: 60 GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQ-GNYTYGVTSTLKGFNVPMNLKCSSG 118
Query: 139 GCNRVIRCTADIVR 152
+ D+V+
Sbjct: 119 DALPCRKAGCDVVQ 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,727,400
Number of Sequences: 62578
Number of extensions: 345880
Number of successful extensions: 842
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 23
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)