Query 027335
Match_columns 225
No_of_seqs 137 out of 700
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1.7E-78 3.6E-83 524.8 15.6 197 26-224 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 1.4E-77 3E-82 519.0 16.4 198 27-225 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 1.7E-77 3.7E-82 520.3 15.2 196 27-225 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 4.5E-74 9.8E-79 496.3 7.5 193 31-225 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 2.1E-59 4.7E-64 387.5 14.2 149 27-224 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 6.2E-55 1.3E-59 359.2 13.6 149 27-225 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 3.5E-49 7.5E-54 325.6 13.2 144 27-223 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.6 1.3E-06 2.8E-11 72.6 12.1 47 100-147 71-120 (155)
9 cd09216 GH64-LPHase-like glyco 90.6 0.37 8E-06 45.2 4.5 76 50-136 60-142 (353)
10 cd09220 GH64-GluB-like glycosi 90.3 0.58 1.3E-05 44.1 5.6 77 51-136 62-145 (369)
11 cd09214 GH64-like glycosyl hyd 70.1 3.2 6.9E-05 38.5 2.2 32 104-137 124-155 (319)
12 cd09214 GH64-like glycosyl hyd 69.8 4.5 9.8E-05 37.5 3.2 39 184-222 274-317 (319)
13 PF07172 GRP: Glycine rich pro 60.0 7.7 0.00017 29.7 2.3 26 1-27 1-28 (95)
14 TIGR00192 urease_beta urease, 56.7 25 0.00054 27.4 4.6 52 20-72 17-94 (101)
15 cd00407 Urease_beta Urease bet 56.0 27 0.00058 27.3 4.7 52 20-71 17-93 (101)
16 cd09220 GH64-GluB-like glycosi 55.4 13 0.00029 35.2 3.5 24 184-207 319-344 (369)
17 cd09216 GH64-LPHase-like glyco 54.8 13 0.00027 35.1 3.3 23 185-207 309-333 (353)
18 PRK13203 ureB urease subunit b 50.2 37 0.00081 26.5 4.7 51 20-71 17-93 (102)
19 PRK13202 ureB urease subunit b 48.3 47 0.001 26.1 4.9 49 23-72 21-95 (104)
20 PRK13201 ureB urease subunit b 43.9 48 0.001 27.1 4.6 52 20-72 17-94 (136)
21 PRK13204 ureB urease subunit b 41.4 53 0.0012 27.5 4.6 52 20-72 40-117 (159)
22 PRK13198 ureB urease subunit b 38.1 65 0.0014 27.0 4.6 52 20-72 45-122 (158)
23 PRK13205 ureB urease subunit b 37.8 67 0.0014 27.0 4.6 52 20-72 17-94 (162)
24 PRK13986 urease subunit alpha; 35.1 76 0.0016 28.1 4.8 52 20-72 122-199 (225)
25 PF00699 Urease_beta: Urease b 33.9 63 0.0014 25.2 3.6 51 20-71 16-92 (100)
26 PRK13192 bifunctional urease s 33.5 81 0.0018 27.6 4.7 51 20-71 126-202 (208)
27 cd05468 pVHL von Hippel-Landau 32.3 84 0.0018 25.4 4.4 44 23-70 7-55 (141)
28 PHA03094 dUTPase; Provisional 32.1 44 0.00095 27.2 2.7 30 46-76 35-70 (144)
29 TIGR03096 nitroso_cyanin nitro 31.5 1.2E+02 0.0026 24.8 5.1 23 46-69 93-115 (135)
30 PLN00115 pollen allergen group 30.5 63 0.0014 25.8 3.3 41 1-43 1-43 (118)
31 PF00947 Pico_P2A: Picornaviru 30.4 22 0.00049 28.8 0.7 17 80-96 83-99 (127)
32 PF08194 DIM: DIM protein; In 30.3 48 0.001 21.2 2.1 12 22-33 21-32 (36)
33 PF05991 NYN_YacP: YacP-like N 30.1 16 0.00036 30.2 -0.1 10 123-132 2-11 (166)
34 PRK02710 plastocyanin; Provisi 29.4 2.2E+02 0.0048 22.0 6.2 21 38-59 41-61 (119)
35 PF13978 DUF4223: Protein of u 27.7 77 0.0017 21.9 2.8 19 19-37 17-35 (56)
36 PF08434 CLCA_N: Calcium-activ 26.2 99 0.0022 28.0 4.2 40 1-43 1-40 (262)
37 PRK01904 hypothetical protein; 23.8 49 0.0011 28.7 1.7 29 4-32 1-29 (219)
38 PF07385 DUF1498: Protein of u 23.3 79 0.0017 28.1 2.9 26 44-72 153-178 (225)
39 PF11142 DUF2917: Protein of u 22.3 1E+02 0.0022 21.5 2.8 30 36-70 26-56 (63)
40 PF11912 DUF3430: Protein of u 21.8 1.1E+02 0.0023 25.6 3.3 14 117-130 117-130 (212)
41 PF02495 7kD_coat: 7kD viral c 21.1 1.6E+02 0.0035 20.1 3.6 13 23-36 32-44 (59)
42 PF12454 Ecm33: GPI-anchored c 20.8 1.7E+02 0.0037 19.1 3.3 10 24-33 25-34 (40)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1.7e-78 Score=524.78 Aligned_cols=197 Identities=48% Similarity=1.039 Sum_probs=186.3
Q ss_pred EEEEEcCCCCceeeeeeC--------CCceeecCCCceeEEeCCCCcceeeeeecccccCCCCccccccCCCCCceeccc
Q 027335 26 TFDIRNNCPYTVWAAAVP--------GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQA 97 (225)
Q Consensus 26 t~ti~N~C~~tVwp~~~p--------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgC~~~~~g~~~C~TGdCgg~~~C~~ 97 (225)
+|||+|||+||||||+++ .+||+|+||++++|.+|++| +|||||||+|++|+.|+++|+||||+|+++|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~W-sGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGW-SGRFWGRTGCSFDSSGKGSCATGDCGGGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCc-ceeeeeccCCCCCCCCccccccCCCCCeeecCC
Confidence 599999999999999975 37999999999999999999 799999999999999999999999999999997
Q ss_pred -CCCCCcceeeeeeccCCCcceeeecccCCCCCcceeeecCC--CCcCCcccccccccCCCCCCccC------CCccCCC
Q 027335 98 -YGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG--GCNRVIRCTADIVRQCPNELRVP------GGCNGPC 168 (225)
Q Consensus 98 -~g~ppaTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g--~C~~~~~C~~dl~~~CP~~l~~~------~gC~s~C 168 (225)
.|.||+|||||||++.+++|||||||||||||||+|.|+++ .| +..+|.+|||+.||.||+++ .||+|+|
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC 158 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGC-RTAGCVADLNAVCPAELQVKNSGGRVVACKSAC 158 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCC-CCCcccCcccccCCHHHeeccCCCcEeeecCHH
Confidence 45899999999998877899999999999999999999763 69 99999999999999999985 2899999
Q ss_pred CcCCCCCcccCCC-----CCCCchhhHHHhhhCCCCCCCCCCCCCCceeeCCCCceEEEec
Q 027335 169 PVFKTEEHCCNSG-----KCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFC 224 (225)
Q Consensus 169 ~~~~~~~~CC~g~-----~C~pt~ys~~fk~~CP~AYsya~Dd~ts~~tC~~~~~y~ItFC 224 (225)
++|++|||||+|+ +|+|+.|+++||++||+||+|+|||++++|+|+++++|+||||
T Consensus 159 ~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 159 LAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999986 7999999999999999999999999999999998899999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=1.4e-77 Score=518.96 Aligned_cols=198 Identities=63% Similarity=1.276 Sum_probs=187.3
Q ss_pred EEEEcCCCCceeeeeeC-------CCceeecCCCceeEEeCCCCcceeeeeecccccCCCCccccccCCCCCceeccc-C
Q 027335 27 FDIRNNCPYTVWAAAVP-------GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQA-Y 98 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgC~~~~~g~~~C~TGdCgg~~~C~~-~ 98 (225)
|||+|||+|||||++++ ++||+|+||+++++.+|++|++|||||||+|++|++|+++|+||||||.++|++ .
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~g 80 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWG 80 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCC
Confidence 79999999999999975 379999999999999999997799999999999999999999999999999998 4
Q ss_pred CCCCcceeeeeeccCCCcceeeecccCCCCCcceeeecC--CCCcCCcccccccccCCCCCCccC-----CCccCCCCcC
Q 027335 99 GSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVS--GGCNRVIRCTADIVRQCPNELRVP-----GGCNGPCPVF 171 (225)
Q Consensus 99 g~ppaTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~--g~C~~~~~C~~dl~~~CP~~l~~~-----~gC~s~C~~~ 171 (225)
++||+|||||||++.+++|||||||||||||||+|.|++ +.| +..+|.+|||..||.||+++ .||+|+|++|
T Consensus 81 g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f 159 (218)
T smart00205 81 GRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDC-KGAGCTADLNAQCPAELQVPGGGSVVACNSACTVF 159 (218)
T ss_pred CCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCc-CCCcCCCcccccCCHHHccccCCcccccccHhhcc
Confidence 599999999999887789999999999999999999974 359 99999999999999999986 3799999999
Q ss_pred CCCCcccCCC-----CCCCchhhHHHhhhCCCCCCCCCCCCCCceeeCCCCceEEEecC
Q 027335 172 KTEEHCCNSG-----KCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 225 (225)
Q Consensus 172 ~~~~~CC~g~-----~C~pt~ys~~fk~~CP~AYsya~Dd~ts~~tC~~~~~y~ItFCP 225 (225)
++|||||+|+ +|+|+.|+++||++||+||+|++||++++|+|+++++|+|+|||
T Consensus 160 ~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 160 GTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 9999999986 79999999999999999999999999999999988999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=1.7e-77 Score=520.33 Aligned_cols=196 Identities=37% Similarity=0.793 Sum_probs=182.4
Q ss_pred EEEEcCCCCceeeeeeC-----------CCceeecCCCceeEEeCCCCcceeeeeecccccCC-CCccccccCCCCCcee
Q 027335 27 FDIRNNCPYTVWAAAVP-----------GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG-AGRGRCQTGDCGGLLQ 94 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-----------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgC~~~~-~g~~~C~TGdCgg~~~ 94 (225)
|||+|||+||||||+++ .+||+|+||++++|.+|++|++|||||||||+||+ .|+++|+||||||.++
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 79999999999999963 37999999999999999999559999999999994 6899999999999999
Q ss_pred cccCCCCCcceeeeeeccCCCcceeeecccCCCCCcceeeecCCCCcCCcccccccccCCCCCCccC-------CCccCC
Q 027335 95 CQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVRQCPNELRVP-------GGCNGP 167 (225)
Q Consensus 95 C~~~g~ppaTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g~C~~~~~C~~dl~~~CP~~l~~~-------~gC~s~ 167 (225)
|++.+.||+|||||+|++. ++|||||||||||||||+|.|.. .| +..+|.+|||..||+||+++ .||+|+
T Consensus 81 C~~~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~-~C-~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~Sa 157 (229)
T cd09219 81 CENSDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI-TC-PQPQCQVDLNVLCPALLRGPLDQKGVNLGCISP 157 (229)
T ss_pred cCCCCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC-CC-CCCcccCCCcccCCHHHccccCCCCccceecCH
Confidence 9988899999999999976 78999999999999999999954 79 99999999999999999985 379999
Q ss_pred CCc-CCC--CCcccCCC-----CCCC--chhhHHHhhhCCCCCCCCCCCCC--CceeeCC--CCceEEEecC
Q 027335 168 CPV-FKT--EEHCCNSG-----KCGP--TKFSRFFKERCPDAYSYPKDDAT--SVFTCPG--GTNYKVVFCP 225 (225)
Q Consensus 168 C~~-~~~--~~~CC~g~-----~C~p--t~ys~~fk~~CP~AYsya~Dd~t--s~~tC~~--~~~y~ItFCP 225 (225)
|++ |++ |||||+|+ +|+| ++|+++||++||+||||||||++ ++|+|++ +++|+|||||
T Consensus 158 C~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 158 CNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999 655 99999986 7999 88999999999999999999999 6799998 7899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=4.5e-74 Score=496.31 Aligned_cols=193 Identities=58% Similarity=1.180 Sum_probs=160.0
Q ss_pred cCCCCceeeeeeCC--------CceeecCCCceeEEeCCCCcceeeeeecccccCCCCccccccCCCCCceeccc-CCCC
Q 027335 31 NNCPYTVWAAAVPG--------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQA-YGSP 101 (225)
Q Consensus 31 N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~~p~~w~sGriW~RtgC~~~~~g~~~C~TGdCgg~~~C~~-~g~p 101 (225)
|||+|||||++++. +|++|+||+++++.+|++| +|||||||||++++.|+++|+||||+|+++|.+ .+.+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~W-sGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGW-SGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTE-SEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccc-cceeeecCCCcCCCCCCcccccCCCCcccccccccCcc
Confidence 89999999999862 6899999999999999999 899999999999999999999999999999998 5689
Q ss_pred CcceeeeeeccCCCcceeeecccCCCCCcceeeecC-CCCcCCcccccccccCCCCCCccC-----CCccCCCCcCCCCC
Q 027335 102 PNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVS-GGCNRVIRCTADIVRQCPNELRVP-----GGCNGPCPVFKTEE 175 (225)
Q Consensus 102 paTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~-g~C~~~~~C~~dl~~~CP~~l~~~-----~gC~s~C~~~~~~~ 175 (225)
|+|||||+|++.+++|||||||||||||||+|+|.+ ..| +..+|.+||+..||.||+++ .||+|+|.+|+++|
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C-~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~ 158 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNC-RSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDE 158 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSS-SSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHH
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCcc-ccccCccccccccchhheeeccCceeeecccceeccCCc
Confidence 999999999877889999999999999999999994 689 99999999999999999983 38999999999999
Q ss_pred cccCCC-----CCCCchhhHHHhhhCCCCCCCCCCCCCCceeeCCCCceEEEecC
Q 027335 176 HCCNSG-----KCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 225 (225)
Q Consensus 176 ~CC~g~-----~C~pt~ys~~fk~~CP~AYsya~Dd~ts~~tC~~~~~y~ItFCP 225 (225)
|||+|. +|+++.|+++||++||+||+|||||++|+|+|+++++|+|||||
T Consensus 159 ~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 159 YCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred cccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999986 89999999999999999999999999999999998999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=2.1e-59 Score=387.47 Aligned_cols=149 Identities=52% Similarity=1.055 Sum_probs=137.8
Q ss_pred EEEEcCCCCceeeeeeC-------CCceeecCCCceeEEeCCCCcceeeeeecccccCC-CCccccccCCCCCceecccC
Q 027335 27 FDIRNNCPYTVWAAAVP-------GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDG-AGRGRCQTGDCGGLLQCQAY 98 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgC~~~~-~g~~~C~TGdCgg~~~C~~~ 98 (225)
|||+|||+||||||+++ ++||+|+||+++++.+|++| +|||||||+|++|+ .|+++|+||||+|+++|++.
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~w-sGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~ 79 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGW-QGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGT 79 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCC-eEeeecccccccCCCCCCCCcccCCCCceeecCCC
Confidence 78999999999999975 47999999999999999999 79999999999998 79999999999999999987
Q ss_pred CCCCcceeeeeeccCCCcceeeecccCCCCCcceeeecCCCCcCCcccccccccCCCCCCccCCCccCCCCcCCCCCccc
Q 027335 99 GSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCC 178 (225)
Q Consensus 99 g~ppaTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~s~C~~~~~~~~CC 178 (225)
|.||+|||||||++.+++|||||||||||||||+|.|+++.| +..+|.
T Consensus 80 g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~~C-~~~~C~------------------------------- 127 (157)
T cd09215 80 GGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPGEC-PTPICA------------------------------- 127 (157)
T ss_pred CCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCCCC-CCCccc-------------------------------
Confidence 799999999999977788999999999999999999976557 555554
Q ss_pred CCCCCCCchhhHHHhhhCCCCCCCCCCCCCCceeeCCCCceEEEec
Q 027335 179 NSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFC 224 (225)
Q Consensus 179 ~g~~C~pt~ys~~fk~~CP~AYsya~Dd~ts~~tC~~~~~y~ItFC 224 (225)
+||+||+|||||++++|+|+++++|+|+||
T Consensus 128 ----------------~Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 128 ----------------ACPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ----------------cCccccccCCCCCccceECCCCCCEEEEeC
Confidence 189999999999999999998899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=6.2e-55 Score=359.15 Aligned_cols=149 Identities=65% Similarity=1.346 Sum_probs=137.3
Q ss_pred EEEEcCCCCceeeeeeC-CCceeecCCCceeEEeCCC-CcceeeeeecccccCCCCccccccCCCCCceecccCCCCCcc
Q 027335 27 FDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPG-TKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNT 104 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-~~g~~L~~G~s~s~~~p~~-w~sGriW~RtgC~~~~~g~~~C~TGdCgg~~~C~~~g~ppaT 104 (225)
|+|+|||+|||||+++| ++||+|+||+++++.+|++ | +|||||||+|++|++|+++|+||||||+++|.+.|.||+|
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L~~g~~~~~~~p~~~w-~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~g~pp~T 79 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQLNPGQSWTIDVPAGTA-GGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGSGKPPAT 79 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeCCCCCeEEEEcCCCCc-eEEEeeecCCCcCCCCCCcccccCCCCeeecCCCCCCCce
Confidence 68999999999999998 6899999999999999998 7 8999999999999999999999999999999987899999
Q ss_pred eeeeeeccCCCcceeeecccCCCCCcceeeecCCCCcCCcccccccccCCCCCCccCCCccCCCCcCCCCCcccCCCCCC
Q 027335 105 LAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVRQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCG 184 (225)
Q Consensus 105 laEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~s~C~~~~~~~~CC~g~~C~ 184 (225)
|+||||+. +++||||||+||||||||+|.|++++| +.++|..
T Consensus 80 l~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~~C-~~~~C~~------------------------------------ 121 (151)
T cd09217 80 LAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGGGC-HAIPCAA------------------------------------ 121 (151)
T ss_pred eEEEEecC-CCCccEEEEeecccccceEEecCCCCC-CCCcCCC------------------------------------
Confidence 99999986 578999999999999999999976567 6655553
Q ss_pred CchhhHHHhhhCCCCCCCCCCCCCCceeeCCCCceEEEecC
Q 027335 185 PTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 225 (225)
Q Consensus 185 pt~ys~~fk~~CP~AYsya~Dd~ts~~tC~~~~~y~ItFCP 225 (225)
+ ||+||+|++|| .++|+|+.+++|+|||||
T Consensus 122 ---------d-C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------N-CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------C-CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 89999999995 699999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=3.5e-49 Score=325.59 Aligned_cols=144 Identities=44% Similarity=0.751 Sum_probs=127.1
Q ss_pred EEEEcCCCCceeeeeeCC--------CceeecCCCceeEEeCCCCcceeeeeecccccCCCCccccccCCCCCceeccc-
Q 027335 27 FDIRNNCPYTVWAAAVPG--------GGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQA- 97 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~~p~~w~sGriW~RtgC~~~~~g~~~C~TGdCgg~~~C~~- 97 (225)
|||+|||+|||||++++. +|++|+||+++++++|++| +||||+||+|+++..+++.|+||||++ +.|.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~w-sGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGF-SGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCc-eEEEEEecCCcccCCCCccccccCCCC-cccCCC
Confidence 689999999999999752 7999999999999999999 799999999999998999999999998 67765
Q ss_pred CCCCCcceeeeeeccCCCcceeeecccCCCCCcceeeecCCCCcCCcccccccccCCCCCCccCCCccCCCCcCCCCCcc
Q 027335 98 YGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVRQCPNELRVPGGCNGPCPVFKTEEHC 177 (225)
Q Consensus 98 ~g~ppaTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~s~C~~~~~~~~C 177 (225)
.+.||+|||||||++.+++|||||||||||||||+|+|..+. .
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~----g--------------------------------- 121 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGD----G--------------------------------- 121 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCC----C---------------------------------
Confidence 668999999999987668899999999999999999996421 1
Q ss_pred cCCCCCCCchhhHHHhhhCCCCCCCCCCCCCCceeeCCCCceEEEe
Q 027335 178 CNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVF 223 (225)
Q Consensus 178 C~g~~C~pt~ys~~fk~~CP~AYsya~Dd~ts~~tC~~~~~y~ItF 223 (225)
.|++. . |||+|||||+.++|+|+.+.+|.|+|
T Consensus 122 ----~C~~~--------~--~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 122 ----TCLST--------G--DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ----Ccccc--------c--cccccCCCCccceEEcCCCCceEEeC
Confidence 11111 1 89999999988999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.56 E-value=1.3e-06 Score=72.58 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=36.3
Q ss_pred CCCcceeeeeeccCCCcceeeecccCCCCCc---ceeeecCCCCcCCcccc
Q 027335 100 SPPNTLAEFALNQFQNLDFIDISNIDGFNVP---MEFSSVSGGCNRVIRCT 147 (225)
Q Consensus 100 ~ppaTlaEftl~~~~~~d~YDvSlVdG~NlP---~~i~p~~g~C~~~~~C~ 147 (225)
..|.|..||+|...+.+.|||+|.|.|...- |.|.|.+..| +++.|.
T Consensus 71 ~~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~~C-p~I~Wp 120 (155)
T PF04681_consen 71 GSPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDPSC-PSIVWP 120 (155)
T ss_pred CCceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCCCC-CceECC
Confidence 3578999999986556899999999997553 7888877667 555443
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=90.61 E-value=0.37 Score=45.20 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=45.8
Q ss_pred cCCCceeEEeCCCCcceeeeeecccccCCCCccccccCCCCCceecccC---CCCC----cceeeeeeccCCCcceeeec
Q 027335 50 DRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAY---GSPP----NTLAEFALNQFQNLDFIDIS 122 (225)
Q Consensus 50 ~~G~s~s~~~p~~w~sGriW~RtgC~~~~~g~~~C~TGdCgg~~~C~~~---g~pp----aTlaEftl~~~~~~d~YDvS 122 (225)
++|++.++.+|. + +||||=..+=. -.|.-.. +.++.-... .-|- -..+|||++. ..-|-++|
T Consensus 60 ~~G~~~tvtiP~-~-sgRiyfS~g~~----L~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T 128 (353)
T cd09216 60 SPGDTTTVLPPR-M-SGRIYFSLGSK----LRFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTT 128 (353)
T ss_pred CCCCceEEcccc-c-CcEEEEEcCCe----eEEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEeccc
Confidence 357788899997 6 89999544311 0122111 111211110 0111 2348999984 45789999
Q ss_pred ccCCCCCcceeeec
Q 027335 123 NIDGFNVPMEFSSV 136 (225)
Q Consensus 123 lVdG~NlP~~i~p~ 136 (225)
.||-|.+||.|+-.
T Consensus 129 ~VD~~~~P~~l~l~ 142 (353)
T cd09216 129 QVDMFSAPLAIGLR 142 (353)
T ss_pred ceeeeccceEEEEe
Confidence 99999999988754
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=90.29 E-value=0.58 Score=44.13 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=46.6
Q ss_pred CCCceeEEeCCCCcceeeeeecccccCCCCccccccCCCCCceeccc-C--CCCC----cceeeeeeccCCCcceeeecc
Q 027335 51 RGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQA-Y--GSPP----NTLAEFALNQFQNLDFIDISN 123 (225)
Q Consensus 51 ~G~s~s~~~p~~w~sGriW~RtgC~~~~~g~~~C~TGdCgg~~~C~~-~--g~pp----aTlaEftl~~~~~~d~YDvSl 123 (225)
+|++.++++|.-+ +||||=..+=.. .|. ...+ |-.+.-.. . ..|- -..+|||++. ..-|-++|.
T Consensus 62 ~G~~~titiP~i~-sgRIyfS~g~~L----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~ 132 (369)
T cd09220 62 PGSTTTVTIPILA-GGRIWFSVDDKL----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISY 132 (369)
T ss_pred CCCceeEEccccc-ceEEEEEcCCeE----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccc
Confidence 5788899999876 899995443110 121 1111 21111111 0 0111 2348999984 467899999
Q ss_pred cCCCCCcceeeec
Q 027335 124 IDGFNVPMEFSSV 136 (225)
Q Consensus 124 VdG~NlP~~i~p~ 136 (225)
||-|.+||.|+-.
T Consensus 133 VD~~~~P~~l~l~ 145 (369)
T cd09220 133 VDFVGLPLGLSLT 145 (369)
T ss_pred eeeeccCeEEEEE
Confidence 9999999988654
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=70.11 E-value=3.2 Score=38.48 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=26.8
Q ss_pred ceeeeeeccCCCcceeeecccCCCCCcceeeecC
Q 027335 104 TLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVS 137 (225)
Q Consensus 104 TlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~ 137 (225)
..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 348999983 67899999999999999887653
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=69.84 E-value=4.5 Score=37.46 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=26.4
Q ss_pred CCchhhHHHhhhCC--CCCCCCCCCCC---CceeeCCCCceEEE
Q 027335 184 GPTKFSRFFKERCP--DAYSYPKDDAT---SVFTCPGGTNYKVV 222 (225)
Q Consensus 184 ~pt~ys~~fk~~CP--~AYsya~Dd~t---s~~tC~~~~~y~It 222 (225)
..+.|++++++.-. .||.|||||-. ++.+-.....++|+
T Consensus 274 ~tN~Yar~vH~~~idg~aYaF~YDDV~~~s~~v~~~~P~~~~it 317 (319)
T cd09214 274 PANYYAQFWHAHSINGLAYGFPYDDVNGQSSTLSTTDPTHATIT 317 (319)
T ss_pred CchHHHHHHHHhccCCCeeecccccccccccccccCCCceEEEE
Confidence 34679999999997 78999999842 33333333445554
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.00 E-value=7.7 Score=29.73 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=12.1
Q ss_pred CchhhhHHHHHHHHH-HHHhh-cccceEE
Q 027335 1 MNYFISLFNASFLFL-TLYLT-LVNAATF 27 (225)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~~~-~~~~~t~ 27 (225)
|++ |.++|+.|||+ +||++ .+.++..
T Consensus 1 MaS-K~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MAS-KAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred Cch-hHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 773 55554444443 34433 3444444
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=56.71 E-value=25 Score=27.43 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=37.6
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeeec
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
++....++.|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~~ 94 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGG-NRRIYGFN 94 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 45567999999999999999952 2 345677899999998643 22 35666543
No 15
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=55.97 E-value=27 Score=27.27 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=37.2
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCCCCcceeeeee
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNPGTKAARIWAR 71 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~~w~sGriW~R 71 (225)
......+++|+|.-.-+|++|.. | ++..+.+||+++++++-+---..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G~ 93 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYGF 93 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEcc
Confidence 45567999999999999999952 2 3456788999999986432113566654
No 16
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=55.45 E-value=13 Score=35.17 Aligned_cols=24 Identities=33% Similarity=0.725 Sum_probs=20.8
Q ss_pred CCchhhHHHhhhCC--CCCCCCCCCC
Q 027335 184 GPTKFSRFFKERCP--DAYSYPKDDA 207 (225)
Q Consensus 184 ~pt~ys~~fk~~CP--~AYsya~Dd~ 207 (225)
..+.|++++++.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 34679999999988 7899999995
No 17
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=54.78 E-value=13 Score=35.08 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=19.8
Q ss_pred CchhhHHHhhhCC--CCCCCCCCCC
Q 027335 185 PTKFSRFFKERCP--DAYSYPKDDA 207 (225)
Q Consensus 185 pt~ys~~fk~~CP--~AYsya~Dd~ 207 (225)
.+.|++++++.=. .||.|||||-
T Consensus 309 tNhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 309 TNHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred chHHHHHHHHhccCCCeeecCcccc
Confidence 3579999999987 6899999994
No 18
>PRK13203 ureB urease subunit beta; Reviewed
Probab=50.25 E-value=37 Score=26.52 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=37.1
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeee
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWAR 71 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~R 71 (225)
.+-...++.|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 93 (102)
T PRK13203 17 AGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAG-ARRVYGF 93 (102)
T ss_pred CCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEcc
Confidence 45567999999999999999952 2 345677899999997643 22 3566654
No 19
>PRK13202 ureB urease subunit beta; Reviewed
Probab=48.27 E-value=47 Score=26.06 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=35.7
Q ss_pred cceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeeec
Q 027335 23 NAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWART 72 (225)
Q Consensus 23 ~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
...+++|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~~ 95 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGG-RREVPGLT 95 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccC-CeEEEcCC
Confidence 56899999999999999952 2 345677899999997643 22 35666543
No 20
>PRK13201 ureB urease subunit beta; Reviewed
Probab=43.85 E-value=48 Score=27.13 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=37.9
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeeec
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+....+|.|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~igG-~r~V~Gfn 94 (136)
T PRK13201 17 NHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAG-KRKIFGFR 94 (136)
T ss_pred CCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 45567999999999999999952 2 345677899999997643 22 35676543
No 21
>PRK13204 ureB urease subunit beta; Reviewed
Probab=41.43 E-value=53 Score=27.53 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=38.3
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeeec
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+-...+|+|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 40 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gfn 117 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPFAG-KRFIFGFN 117 (159)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEccC
Confidence 45567999999999999999951 2 345678899999997643 32 35777644
No 22
>PRK13198 ureB urease subunit beta; Reviewed
Probab=38.13 E-value=65 Score=27.00 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=37.9
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeeec
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+-...+|.|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 45 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gfn 122 (158)
T PRK13198 45 ENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGG-KQTLYGFN 122 (158)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEccC-ceEEEccC
Confidence 45567999999999999999951 2 345677899999997643 32 35676643
No 23
>PRK13205 ureB urease subunit beta; Reviewed
Probab=37.76 E-value=67 Score=26.97 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=37.7
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeeec
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+....+|+|+|.-.-+|.+|.. | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 17 ~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~igG-~R~V~Gfn 94 (162)
T PRK13205 17 VGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAIGG-DRIVAGFR 94 (162)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 45677999999999999999952 2 345677899999997643 22 35666544
No 24
>PRK13986 urease subunit alpha; Provisional
Probab=35.07 E-value=76 Score=28.13 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=38.5
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeeec
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+-...+++|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 122 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~n 199 (225)
T PRK13986 122 AGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDIGG-NRRIFGFN 199 (225)
T ss_pred CCCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEecCC
Confidence 45567999999999999999952 2 345678899999997643 32 45777644
No 25
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=33.90 E-value=63 Score=25.18 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=31.0
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeee
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWAR 71 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~R 71 (225)
.+-...+++|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+++|-
T Consensus 16 ~gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 92 (100)
T PF00699_consen 16 AGRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPIGG-NRRVYGF 92 (100)
T ss_dssp TTSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-ST-T-EE-ST
T ss_pred CCCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEccC-CeEEEcC
Confidence 44567899999999999999951 2 345677899999987633 32 3456543
No 26
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=33.50 E-value=81 Score=27.63 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=37.1
Q ss_pred hcccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCceeEEeCC-CCcceeeeee
Q 027335 20 TLVNAATFDIRNNCPYTVWAAAV------------------------P-GGGRRLDRGQNWPLNVNP-GTKAARIWAR 71 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~R 71 (225)
.+-...+++|+|.-.-+|++|.. | ++..+.+||+++++++-+ += ..+|+|-
T Consensus 126 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 202 (208)
T PRK13192 126 AGRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPIGG-ARVVIGF 202 (208)
T ss_pred CCCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEcc
Confidence 44567999999999999999952 2 345677899999987643 22 3566654
No 27
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=32.25 E-value=84 Score=25.45 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=31.1
Q ss_pred cceEEEEEcCCCCceeeeeeCCCc-----eeecCCCceeEEeCCCCcceeeee
Q 027335 23 NAATFDIRNNCPYTVWAAAVPGGG-----RRLDRGQNWPLNVNPGTKAARIWA 70 (225)
Q Consensus 23 ~~~t~ti~N~C~~tVwp~~~p~~g-----~~L~~G~s~s~~~p~~w~sGriW~ 70 (225)
....|+|+|+.+.+|-+-++--.| ..|+||+.+.++- + .|..|=
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~~T---y-~~H~W~ 55 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQNT---Y-VGHPWL 55 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEeecc---c-CCCcEE
Confidence 357899999999999888764222 4799999876532 2 355563
No 28
>PHA03094 dUTPase; Provisional
Probab=32.07 E-value=44 Score=27.16 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=23.7
Q ss_pred ceeecCCCcee------EEeCCCCcceeeeeeccccc
Q 027335 46 GRRLDRGQNWP------LNVNPGTKAARIWARTNCQF 76 (225)
Q Consensus 46 g~~L~~G~s~s------~~~p~~w~sGriW~RtgC~~ 76 (225)
.+.|.||+... +.+|.+| .|.|++|.+-..
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~-~g~i~~RSsla~ 70 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFC-YGRIAPRSGLSL 70 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCE-EEEEEccccccc
Confidence 46788888765 7889999 699999987543
No 29
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=31.54 E-value=1.2e+02 Score=24.76 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=18.0
Q ss_pred ceeecCCCceeEEeCCCCcceeee
Q 027335 46 GRRLDRGQNWPLNVNPGTKAARIW 69 (225)
Q Consensus 46 g~~L~~G~s~s~~~p~~w~sGriW 69 (225)
...|+||++++++++..- .|++|
T Consensus 93 s~~I~pGet~TitF~adK-pG~Y~ 115 (135)
T TIGR03096 93 SEVIKAGETKTISFKADK-AGAFT 115 (135)
T ss_pred ceEECCCCeEEEEEECCC-CEEEE
Confidence 356899999988887765 58886
No 30
>PLN00115 pollen allergen group 3; Provisional
Probab=30.53 E-value=63 Score=25.76 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=19.3
Q ss_pred CchhhhHHHHHHHHHHHHhhcc--cceEEEEEcCCCCceeeeeeC
Q 027335 1 MNYFISLFNASFLFLTLYLTLV--NAATFDIRNNCPYTVWAAAVP 43 (225)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~--~~~t~ti~N~C~~tVwp~~~p 43 (225)
|++++.|... +.+++|++.+. ...+|+|.-.- .+-|..++.
T Consensus 1 ~~~~~~~~~~-~~~a~l~~~~~~g~~v~F~V~~gS-np~yL~ll~ 43 (118)
T PLN00115 1 MSSLSFLLLA-VALAALFAVGSCATEVTFKVGKGS-SSTSLELVT 43 (118)
T ss_pred CchhHHHHHH-HHHHHHhhhhhcCCceEEEECCCC-CcceEEEEE
Confidence 5555553322 33344443332 35677776555 234445443
No 31
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=30.41 E-value=22 Score=28.78 Aligned_cols=17 Identities=53% Similarity=1.415 Sum_probs=13.2
Q ss_pred CccccccCCCCCceecc
Q 027335 80 GRGRCQTGDCGGLLQCQ 96 (225)
Q Consensus 80 g~~~C~TGdCgg~~~C~ 96 (225)
|.+.|+-|||||.|.|.
T Consensus 83 g~Gp~~PGdCGg~L~C~ 99 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCK 99 (127)
T ss_dssp EE-SSSTT-TCSEEEET
T ss_pred ecccCCCCCCCceeEeC
Confidence 45789999999999997
No 32
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.31 E-value=48 Score=21.15 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=7.3
Q ss_pred ccceEEEEEcCC
Q 027335 22 VNAATFDIRNNC 33 (225)
Q Consensus 22 ~~~~t~ti~N~C 33 (225)
+.+.++.|--+|
T Consensus 21 ~~pG~ViING~C 32 (36)
T PF08194_consen 21 ATPGNVIINGKC 32 (36)
T ss_pred CCCCeEEECcee
Confidence 446677666555
No 33
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=30.13 E-value=16 Score=30.24 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=7.6
Q ss_pred ccCCCCCcce
Q 027335 123 NIDGFNVPME 132 (225)
Q Consensus 123 lVdG~NlP~~ 132 (225)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899997544
No 34
>PRK02710 plastocyanin; Provisional
Probab=29.41 E-value=2.2e+02 Score=21.98 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=12.9
Q ss_pred eeeeeCCCceeecCCCceeEEe
Q 027335 38 WAAAVPGGGRRLDRGQNWPLNV 59 (225)
Q Consensus 38 wp~~~p~~g~~L~~G~s~s~~~ 59 (225)
+....| .-..+++|+..++..
T Consensus 41 ~~~F~P-~~i~v~~Gd~V~~~N 61 (119)
T PRK02710 41 MLAFEP-STLTIKAGDTVKWVN 61 (119)
T ss_pred eeEEeC-CEEEEcCCCEEEEEE
Confidence 344455 356778888766643
No 35
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=27.71 E-value=77 Score=21.94 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=14.4
Q ss_pred hhcccceEEEEEcCCCCce
Q 027335 19 LTLVNAATFDIRNNCPYTV 37 (225)
Q Consensus 19 ~~~~~~~t~ti~N~C~~tV 37 (225)
+++-.+...+=.|||+|+-
T Consensus 17 Lt~CTG~v~Nk~knCsYDY 35 (56)
T PF13978_consen 17 LTACTGHVENKEKNCSYDY 35 (56)
T ss_pred HhhccceeeccCCCCccee
Confidence 4555677788889999874
No 36
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=26.25 E-value=99 Score=27.99 Aligned_cols=40 Identities=28% Similarity=0.208 Sum_probs=26.7
Q ss_pred CchhhhHHHHHHHHHHHHhhcccceEEEEEcCCCCceeeeeeC
Q 027335 1 MNYFISLFNASFLFLTLYLTLVNAATFDIRNNCPYTVWAAAVP 43 (225)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~t~ti~N~C~~tVwp~~~p 43 (225)
|.++++++++++|+ +...+....|++.|+==..|-+|+.|
T Consensus 1 ~~~~~~~~~~l~l~---l~~~~~~s~v~L~nnGYe~vvIAI~p 40 (262)
T PF08434_consen 1 MGSFKSLVLLLVLH---LLSGASTSLVKLNNNGYEDVVIAINP 40 (262)
T ss_pred CchhhhhHHHHHHH---HhccccccEEEecCCCcccEEEEECC
Confidence 55556555443332 23444666799999988899999865
No 37
>PRK01904 hypothetical protein; Provisional
Probab=23.84 E-value=49 Score=28.74 Aligned_cols=29 Identities=17% Similarity=-0.112 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHhhcccceEEEEEcC
Q 027335 4 FISLFNASFLFLTLYLTLVNAATFDIRNN 32 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~t~ti~N~ 32 (225)
|+++..+++++++++.+.+.|.||++-.+
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~tL~lp~~ 29 (219)
T PRK01904 1 MKLRKAALAVATLLTSTASFAGMVTTSSN 29 (219)
T ss_pred CchhHHHHHHHHHHHhHHhhHheeeCCCc
Confidence 34433333333333444555667777665
No 38
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=23.35 E-value=79 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.343 Sum_probs=15.2
Q ss_pred CCceeecCCCceeEEeCCCCcceeeeeec
Q 027335 44 GGGRRLDRGQNWPLNVNPGTKAARIWART 72 (225)
Q Consensus 44 ~~g~~L~~G~s~s~~~p~~w~sGriW~Rt 72 (225)
++-.+|.||+|.++. |.-| -+|||..
T Consensus 153 G~~l~L~PGESiTL~-Pg~y--H~Fw~e~ 178 (225)
T PF07385_consen 153 GTQLRLNPGESITLP-PGIY--HWFWGEG 178 (225)
T ss_dssp T-EEEE-TT-EEEE--TTEE--EEEEE-T
T ss_pred CceEEeCCCCeEeeC-CCCe--eeEEecC
Confidence 445789999986654 4446 8999864
No 39
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=22.33 E-value=1e+02 Score=21.53 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=20.1
Q ss_pred ceeeeeeC-CCceeecCCCceeEEeCCCCcceeeee
Q 027335 36 TVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWA 70 (225)
Q Consensus 36 tVwp~~~p-~~g~~L~~G~s~s~~~p~~w~sGriW~ 70 (225)
.||..... .....|+||++..+.- .+|+|-
T Consensus 26 ~vWlT~~g~~~D~~L~~G~~l~l~~-----g~~vvl 56 (63)
T PF11142_consen 26 RVWLTREGDPDDYWLQAGDSLRLRR-----GGRVVL 56 (63)
T ss_pred cEEEECCCCCCCEEECCCCEEEeCC-----CCEEEE
Confidence 67877643 3578899998876653 356663
No 40
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=21.83 E-value=1.1e+02 Score=25.65 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=8.1
Q ss_pred ceeeecccCCCCCc
Q 027335 117 DFIDISNIDGFNVP 130 (225)
Q Consensus 117 d~YDvSlVdG~NlP 130 (225)
.+|.++.++-..+|
T Consensus 117 ~~~~~~~~~~p~ip 130 (212)
T PF11912_consen 117 YYYISSCSDNPYIP 130 (212)
T ss_pred eEEEEEEecCCcCC
Confidence 45666666754444
No 41
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=21.14 E-value=1.6e+02 Score=20.12 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=9.6
Q ss_pred cceEEEEEcCCCCc
Q 027335 23 NAATFDIRNNCPYT 36 (225)
Q Consensus 23 ~~~t~ti~N~C~~t 36 (225)
.+..++|+| |.++
T Consensus 32 tGeSv~I~g-C~~~ 44 (59)
T PF02495_consen 32 TGESVTISG-CEFT 44 (59)
T ss_pred eCcEEEEEC-CCCC
Confidence 467888888 8654
No 42
>PF12454 Ecm33: GPI-anchored cell wall organization protein
Probab=20.77 E-value=1.7e+02 Score=19.06 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=7.3
Q ss_pred ceEEEEEcCC
Q 027335 24 AATFDIRNNC 33 (225)
Q Consensus 24 ~~t~ti~N~C 33 (225)
+.++||.|+=
T Consensus 25 ~~t~tI~nQ~ 34 (40)
T PF12454_consen 25 GGTTTIENQA 34 (40)
T ss_pred CCceeeeccc
Confidence 4688888863
Done!