BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027338
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 362 bits (929), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/218 (79%), Positives = 188/218 (86%)
Query: 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
+S IAKDVTELIGNTPLVYLNN+ GCV R+AAKLEMMEPCSSVKDRIG+SMISDAE KG
Sbjct: 2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKG 61
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
LI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRIIL AFG ELVLTDP
Sbjct: 62 LIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXX 184
AKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG+GG+ID VS
Sbjct: 122 AKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIG 181
Query: 185 XXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
K+LKE+N N+KLYG+EP ES +LSGGKPG
Sbjct: 182 TGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/217 (79%), Positives = 187/217 (86%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
S IAKDVTELIGNTPLVYLNN+ GCV R+AAKLEMMEPCSSVKDRIG+SMISDAE KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
I PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRIIL AFG ELVLTDPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXX 185
KGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG+GG+ID VS
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 186 XXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
K+LKE+N N+KLYG+EP ES +LSGGKPG
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/218 (78%), Positives = 187/218 (85%)
Query: 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
+S IAKDVTELIGNTPLVYLNN+ GCV R+AAKLEMMEPCSSV DRIG+SMISDAE KG
Sbjct: 2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKG 61
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
LI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRIIL AFG ELVLTDP
Sbjct: 62 LIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXX 184
AKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG+GG+ID VS
Sbjct: 122 AKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIG 181
Query: 185 XXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
K+LKE+N N+KLYG+EP ES +LSGGKPG
Sbjct: 182 TGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 331 bits (848), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 183/216 (84%)
Query: 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
NIA +V++LIG TP+VYLN+I GCVA IAAKLE+MEPC SVKDRIGYSM++DAE KG I
Sbjct: 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFI 171
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR++L+AFGAELVLTDPAK
Sbjct: 172 SPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAK 231
Query: 127 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXX 186
GM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W + G++D V+
Sbjct: 232 GMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTG 291
Query: 187 XXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+F+KEKNP ++ G+EPTES +LSGGKPG
Sbjct: 292 GTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 130/218 (59%), Positives = 169/218 (77%)
Query: 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
S+NI K V++LIG TPLVYLN + GC A +A K EMM+P +S+KDR Y+MI+DAE K
Sbjct: 22 STNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKN 81
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
LITPG++ LIEPTSGN GI +AFMAA K Y++++TMP+ SLERR+ +RAFGAEL+LTDP
Sbjct: 82 LITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXX 184
AKGM G V+KA E+L TPNA+MLQQF NPAN ++H+ETTGPE+W+ + G++D V
Sbjct: 142 AKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIG 201
Query: 185 XXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
++LK KNPN+K+YG+EP+ES VL+GGKPG
Sbjct: 202 SGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 285 bits (730), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 129/218 (59%), Positives = 168/218 (77%)
Query: 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
S+NI K V++LIG TPLVYLN + GC A +A K EMM+P +S+ DR Y+MI+DAE K
Sbjct: 22 STNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKN 81
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
LITPG++ LIEPTSGN GI +AFMAA K Y++++TMP+ SLERR+ +RAFGAEL+LTDP
Sbjct: 82 LITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXX 184
AKGM G V+KA E+L TPNA+MLQQF NPAN ++H+ETTGPE+W+ + G++D V
Sbjct: 142 AKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIG 201
Query: 185 XXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
++LK KNPN+K+YG+EP+ES VL+GGKPG
Sbjct: 202 SGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 152/217 (70%), Gaps = 3/217 (1%)
Query: 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
+IA+D+T+LIG TPLV L + +G VA I AKLE P +SVKDRIG +M+ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
P +++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR++LRA+GAEL+LT A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 127 GMKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXX 185
GM GA+ KAEE LAKT Y + QQFENPANP IH TT E+W+ + G++D +V+
Sbjct: 124 GMSGAIAKAEE-LAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 186 XXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ +KE+ P+ + +EP SPVLSGG+ G
Sbjct: 183 GGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 226 bits (577), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 151/217 (69%), Gaps = 3/217 (1%)
Query: 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
+IA+D+T+LIG TPLV L + +G VA I AKLE P +SV DRIG +M+ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
P +++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR++LRA+GAEL+LT A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 127 GMKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXX 185
GM GA+ KAEE LAKT Y + QQFENPANP IH TT E+W+ + G++D +V+
Sbjct: 124 GMSGAIAKAEE-LAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 186 XXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ +KE+ P+ + +EP SPVLSGG+ G
Sbjct: 183 GGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 152/219 (69%), Gaps = 3/219 (1%)
Query: 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
S IA+++T+LIG TPLV L + +G A + AKLE P S+KDRIG +MI AE G
Sbjct: 4 SMTIAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAG 63
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
LI P +++++EPTSGNTGI LA ++AA+ Y+ ++TMP +MS+ERR++LRA+GAELVLT
Sbjct: 64 LIKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPG 122
Query: 125 AKGMKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSXX 183
A+GM GA+ KAEE LAKT + Y + QQFENPANP +H TT E+W+ + G++D VS
Sbjct: 123 AEGMAGAIAKAEE-LAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGV 181
Query: 184 XXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ +K++ P+ + +EP SPVLSGG+ G
Sbjct: 182 GTGGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 219 bits (559), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
S IA+++ +LIG TPLV L + +G A + AKLE P S+KDRIG +MI AE G
Sbjct: 4 SMTIAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAG 63
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
LI P +++++EPTSGNTGI LA ++AA+ Y+ ++TMP +MS+ERR++LRA+GAELVLT
Sbjct: 64 LIKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPG 122
Query: 125 AKGMKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSXX 183
A+GM GA+ KAEE LAKT + Y + QQFENPANP +H TT E+W+ + G++D VS
Sbjct: 123 AEGMAGAIAKAEE-LAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGV 181
Query: 184 XXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ +K++ P+ + +EP SPVLSGG+ G
Sbjct: 182 GTGGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 2/211 (0%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGES 71
+TELIG+TP V LN IV+ A + KLE M P SSVKDRI +MI AE G + PG++
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGA 131
+ +EPTSGNTGIGLA +AAAK Y+ ++ MP +MSLERR +LRA+GAELVLT A+GM+GA
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 132 VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXX 191
+ KAEE L + +M QQF+N ANP+IH TTG E+ + G ++DA V+
Sbjct: 127 IAKAEE-LVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITG 185
Query: 192 XXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
K L+E PNIK+Y +EP +SPVLSGGKPG
Sbjct: 186 AGKVLREAYPNIKIYAVEPADSPVLSGGKPG 216
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 207 bits (527), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 150/222 (67%), Gaps = 7/222 (3%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
S I +D + IG+TPLV LN I NG RI AK+E P SVK RIG +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
+ PG L+EPT+GNTGI LA++AAA+ Y+L +TMP +MS+ERR +L+A GA LVLT+ A
Sbjct: 58 LKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 KGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXX 184
KGMKGA+QKAEEI+A P Y +LQQF NPANP+IH +TTGPE+W+ + G++D +S
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 XXXXXXXXXKFLKEKNPNIKL--YGIEPTESPVLSGGKPGIE 224
+++K L +EPT+SPV++ G E
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEE 218
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 149/222 (67%), Gaps = 7/222 (3%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
S I +D + IG+TPLV LN I NG RI AK+E P SV RIG +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGV 57
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
+ PG L+EPT+GNTGI LA++AAA+ Y+L +TMP +MS+ERR +L+A GA LVLT+ A
Sbjct: 58 LKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 KGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXX 184
KGMKGA+QKAEEI+A P Y +LQQF NPANP+IH +TTGPE+W+ + G++D +S
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 XXXXXXXXXKFLKEKNPNIKL--YGIEPTESPVLSGGKPGIE 224
+++K L +EPT+SPV++ G E
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEE 218
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 145/219 (66%), Gaps = 1/219 (0%)
Query: 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAK 63
+S N+A+ + +LIG TP +YLN + N A++ K+E P +SV DR+G+++ AE +
Sbjct: 7 KSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKE 65
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
G + PG+S+++E +SGNTG+ LA + A + Y++IITMP SMSLERR +LR FGAE++LT
Sbjct: 66 GKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTP 125
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXX 183
A GMKGAV A++I+A PNA + QF N IH ETTGPE+W+ + +D ++
Sbjct: 126 AALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGV 185
Query: 184 XXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ LK+ + ++ +EPTESPVLSGGKPG
Sbjct: 186 GTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 144/219 (65%), Gaps = 1/219 (0%)
Query: 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAK 63
+S N+A+ + +LIG TP +YLN + N A++ K+E P +SVKDR+G+++ AE +
Sbjct: 28 KSRNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKE 86
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
G + PG+SV++E +SGNTG+ LA + A + Y++IITMP SMSLERR +LR FGAE++LT
Sbjct: 87 GKLIPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTP 146
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXX 183
A GMKGAV A++I+ PNA + QF N IH ETTGPE+W+ + +D ++
Sbjct: 147 AALGMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGV 206
Query: 184 XXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ LK+ + ++ +EP ESPVLSGGKPG
Sbjct: 207 GTGGTLTGVARALKKMGSHARIVAVEPMESPVLSGGKPG 245
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 140/208 (67%), Gaps = 2/208 (0%)
Query: 16 IGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGE-SVLI 74
IG TP+V L +V +A + KLE + P S+KDR + MI DAE +G++ PG V++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK 134
EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+ +L+AFGAELVLTDP + M A ++
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 135 AEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXK 194
A L + A+M QF+NPAN + HYETTGPEL++ GRIDA V +
Sbjct: 127 ALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGR 185
Query: 195 FLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+LKE+ P++K+ +EP S VLSGGK G
Sbjct: 186 YLKERIPHVKVIAVEPARSNVLSGGKMG 213
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 136/212 (64%), Gaps = 5/212 (2%)
Query: 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLIT 67
I D + IGNTPLV L + G + K+E P SV RIG +M+ AE G +T
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 127
G+ + ++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +L G LVLT+ AKG
Sbjct: 61 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 128 MKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXX 186
MKGA+ KAEEI+A P+ Y ML+QFENPANP+IH ETTGPE+WK + G++D +V+
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 187 XXXXXXXKFLK-EKNPNIKLYGIEPTESPVLS 217
+ +K + I +EP ESPV+S
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVIS 211
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 14 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVL 73
+ IGNTPLV L + + + KLE P SV DR SMI +AE +G I PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
IE TSGNTGI LA +AA K YR+ + MP +MS ERR +RA+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXX 193
A E +A +L QF NP NPK HY TTGPE+W+ +GGRI VS
Sbjct: 125 LALE-MANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KFLKEKNPNIKLYGIEPTESPVLSG 218
+F++E++ + + G++P E + G
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 132/210 (62%), Gaps = 9/210 (4%)
Query: 14 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVL 73
LIG+TP+V L++I +RI KLE P SVKDR MI DAE +GL+ G +
Sbjct: 4 RLIGSTPIVRLDSID----SRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
+EPTSGN GI +A + A + +R+I+TMP +MS+ERR +L+ GAELVLT GMKGAV+
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXX 193
KA EI +T A+ML QFENP N H TTGPE+ K +IDA V+
Sbjct: 117 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 194 KFLKEKNPN-IKLYGIEPTESPVLSGGKPG 222
+ LK N +K+ +EP +SPVLSGG+PG
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 205
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 14 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVL 73
+ IGNTPLV L + + + KLE P SVKDR SMI +AE +G I PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
IE TSGNTGI LA +AA K YR+ + MP +MS ERR +RA+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXX 193
A E +A +L QF NP NP HY TTGPE+W+ +GGRI VS
Sbjct: 125 LALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KFLKEKNPNIKLYGIEPTESPVLSG 218
+F++E++ + + G++P E + G
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 132/210 (62%), Gaps = 9/210 (4%)
Query: 14 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVL 73
LIG+TP+V L++I +RI KLE P SVKDR MI DAE +GL+ G +
Sbjct: 16 RLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
+EPTSGN GI +A + A + +R+I+TMP +MS+ERR +L+ GAELVLT GMKGAV+
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXX 193
KA EI ++ A+ML QFENP N H TTGPE+ K +IDA V+
Sbjct: 129 KALEI-SRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 194 KFLKEKNPN-IKLYGIEPTESPVLSGGKPG 222
+ LK N +K+ +EP +SPVLSGG+PG
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 217
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Query: 14 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVL 73
+ IGNTPLV L + + + KLE P SV DR SMI +AE +G I PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
IE TSGNTGI LA +AA K YR+ + MP +MS ERR +RA+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXX 193
A E +A +L QF NP NP HY TTGPE+W+ +GGRI VS
Sbjct: 125 LALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KFLKEKNPNIKLYGIEPTESPVLSG 218
+F++E++ + + G++P E + G
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 121/205 (59%), Gaps = 2/205 (0%)
Query: 14 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVL 73
+ IGNTPLV L I + I KLE P SVKDR SMI +AE +G I PG+ VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
IE TSGNTGI LA +AA K YR+ + MP +MS ERR +RA+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXX 193
A +++ +L QF NP NP HY TTGPE+W+ + GRI VS
Sbjct: 125 LALA-MSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 194 KFLKEKNPNIKLYGIEPTESPVLSG 218
+FL+E+ + + G++P E + G
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPG 208
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 8/213 (3%)
Query: 4 ESSNIAKDVTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAE 61
+S I D+ + IG+TP+V +N I G + AK E SVKDRI MI DAE
Sbjct: 29 KSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAE 88
Query: 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121
G + PG+++ IEPTSGNTGIGLA AA + YR II MP MS E+ +LRA GAE+V
Sbjct: 89 RDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR 147
Query: 122 TDPAKGM----KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRID 177
T P + V A + + PN+++L Q+ N +NP HY+TT E+ + G++D
Sbjct: 148 T-PTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 206
Query: 178 ALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEP 210
LV+ + LKEK P ++ G++P
Sbjct: 207 MLVASVGTGGTITGIARKLKEKCPGCRIIGVDP 239
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 8/213 (3%)
Query: 4 ESSNIAKDVTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAE 61
+S I D+ + IG+TP+V +N I G + AK E SVKDRI MI DAE
Sbjct: 94 KSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAE 153
Query: 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121
G + PG+++ IEPTSGNTGIGLA AA + YR II MP MS E+ +LRA GAE+V
Sbjct: 154 RDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR 212
Query: 122 TDPAKGM----KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRID 177
T P + V A + + PN+++L Q+ N +NP HY+TT E+ + G++D
Sbjct: 213 T-PTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 271
Query: 178 ALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEP 210
LV+ + LKEK P ++ G++P
Sbjct: 272 MLVASVGTGGTITGIARKLKEKCPGCRIIGVDP 304
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 8/213 (3%)
Query: 4 ESSNIAKDVTELIGNTPLVYLNNI--VNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAE 61
I ++ E+IG TPLV LNNI +G + AK E + P SVKDRIGY M+ DAE
Sbjct: 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE 105
Query: 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121
+GL+ PG ++ IEPTSGNTGIGLA A K Y+ II MP MS E+ LR GA+++
Sbjct: 106 EQGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIR 164
Query: 122 TDPAKGM----KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRID 177
T P + +G + A+++ +TPN+ +L Q+ N NP HY+ T E+ ++D
Sbjct: 165 T-PTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVD 223
Query: 178 ALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEP 210
+V + +KE+ P+ ++ G++P
Sbjct: 224 MIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDP 256
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 7/220 (3%)
Query: 8 IAKDVTELIGNTPLVYLNNIVNGCV----ARIAAKLEMMEPCSSVKDRIGYSMISDAEAK 63
I ++ E IG TPLV L+ + RI KLE P SSVKDR+G++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
G + PG + IE TSGNTGI L A YR+ I MP++MS+ER++I++AFGAEL+LT+
Sbjct: 73 GRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 124 PAKGMKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSX 182
KGM GA+++ +++ + P Y + QF NP N H+ T E+W+ + G +D +VS
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 190
Query: 183 XXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ LKEK IK+ +EP ES VL G G
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 7/220 (3%)
Query: 8 IAKDVTELIGNTPLVYLNNIVNGCV----ARIAAKLEMMEPCSSVKDRIGYSMISDAEAK 63
I ++ E IG TPLV L+ + RI KLE P SSVKDR+G++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 71
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
G + PG + IE TSGNTGI L A YR+ I MP++MS+ER++I++AFGAEL+LT+
Sbjct: 72 GRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 130
Query: 124 PAKGMKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSX 182
KGM GA+++ +++ + P Y + QF NP N H+ T E+W+ + G +D +VS
Sbjct: 131 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 189
Query: 183 XXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+ LKEK IK+ +EP ES VL G G
Sbjct: 190 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 229
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 14 ELIGNTPLVYLNNIV-------NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
+ +GNTPLV L + +G R+ AKLE P S+KDR MI AEA GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
PG ++L EPTSGNTGI LA A K YRLI MP + S+ERR +L +GA+++ +
Sbjct: 71 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 127 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXX 186
G AV A+E+ A P+ ML Q+ NPAN HY TGPEL I V+
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL-LADLPEITHFVAGLGTT 188
Query: 187 XXXXXXXKFLKEKNPNIKLYGIEP 210
+FL+E N+K+ EP
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEP 212
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 109/204 (53%), Gaps = 9/204 (4%)
Query: 14 ELIGNTPLVYLNNIV-------NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
+ +GNTPLV L + +G R+ AKLE P S+ DR MI AEA GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
PG ++L EPTSGNTGI LA A K YRLI MP + S+ERR +L +GA+++ +
Sbjct: 72 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 127 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXX 186
G AV A+E+ A P+ ML Q+ NPAN HY TGPEL I V+
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL-LADLPEITHFVAGLGTT 189
Query: 187 XXXXXXXKFLKEKNPNIKLYGIEP 210
+FL+E N+K+ EP
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEP 213
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 109/204 (53%), Gaps = 9/204 (4%)
Query: 14 ELIGNTPLVYLNNIV-------NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
+ +GNTPLV L + +G R+ AKLE P S+KDR MI AEA GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
PG ++L EPTSGNTGI LA A K YRLI MP + S+ERR +L +GA+++ +
Sbjct: 69 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 127 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXX 186
G AV A+E+ A P+ ML Q+ NPAN HY TGPEL I V+
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL-LADLPEITHFVAGLGTT 186
Query: 187 XXXXXXXKFLKEKNPNIKLYGIEP 210
+FL+E N+ + EP
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEP 210
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 15/207 (7%)
Query: 19 TPLVYLN-NIVNGCVARIAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITPGESVLIEP 76
TPLV + NG R+ KLE P S SVKDR +IS + + G S++ +
Sbjct: 97 TPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADA 151
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAE 136
TS N G+ L+ +A YR + +P + +++ R GA+ V+ DP V
Sbjct: 152 TSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQ-VIVDPEA--PSTVHLLP 208
Query: 137 EILAKTPNAYMLQ--QFENPANPKIHYETTGPELW---KGSGGRIDALVSXXXXXXXXXX 191
++ + N + QF N AN + H T E++ + G + +
Sbjct: 209 RVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSA 268
Query: 192 XXKFLKEKNPNIKLYGIEPTESPVLSG 218
+L+ +P+I+ ++P + + G
Sbjct: 269 AAFYLQSVDPSIRAVLVQPAQGDSIPG 295
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 15/207 (7%)
Query: 19 TPLVYLN-NIVNGCVARIAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITPGESVLIEP 76
TPLV + NG R+ KLE P S SV DR +IS + + G S++ +
Sbjct: 97 TPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADA 151
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAE 136
TS N G+ L+ +A YR + +P + +++ R GA+ V+ DP V
Sbjct: 152 TSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQ-VIVDPEA--PSTVHLLP 208
Query: 137 EILAKTPNAYMLQ--QFENPANPKIHYETTGPELW---KGSGGRIDALVSXXXXXXXXXX 191
++ + N + QF N AN + H T E++ + G + +
Sbjct: 209 RVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSA 268
Query: 192 XXKFLKEKNPNIKLYGIEPTESPVLSG 218
+L+ +P+I+ ++P + + G
Sbjct: 269 AAFYLQSVDPSIRAVLVQPAQGDSIPG 295
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMIS----DAEAKGLITPGESVLI 74
TPL + + + I K E +P S K R Y+M++ + +A G+IT
Sbjct: 32 TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITA------ 85
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121
++GN G+AF +A + +I MP + + + +R FG E++L
Sbjct: 86 --SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
Length = 360
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGES 71
VT L G TPL+ N+ I K+E + P S KDR ++DA A G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAH-----GQR 86
Query: 72 VLIEPTSGNT 81
++ ++GNT
Sbjct: 87 AVLCASTGNT 96
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG------MKG 130
T GN G G+A+ A +I MP + ER + GAE ++TD M+
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQH 178
Query: 131 AVQKAEEILAKT 142
A Q E++ T
Sbjct: 179 AQQHGWEVVQDT 190
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG------MKG 130
T GN G G+A+ A +I MP + ER + GAE ++TD M+
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQH 178
Query: 131 AVQKAEEILAKT 142
A Q E++ T
Sbjct: 179 AQQHGWEVVQDT 190
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG------MKG 130
T GN G G+A+ A +I MP + ER + GAE ++TD M+
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQH 178
Query: 131 AVQKAEEILAKT 142
A Q E++ T
Sbjct: 179 AQQHGWEVVQDT 190
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120
L+ +SGN G+A+ A + ++ MP S ++ RA+GAE+V
Sbjct: 68 LLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 3 VESSNIAKDVTELIGNTPLVYLNNIVNGCVAR-IAAKLEMMEPCSSVKDRIGYSMISDAE 61
VE ++I ++ + I TP V ++I+N R + K E+ + S K R + +
Sbjct: 12 VEKAHI--NIRDSIHLTP-VLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLV 68
Query: 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121
L ++V+ +SGN G L + A + I +P + +++ ++A+GA +V
Sbjct: 69 PDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVY 127
Query: 122 TDPAKGMKGAVQK 134
+P+ + V K
Sbjct: 128 CEPSDESRENVAK 140
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 30.4 bits (67), Expect = 0.76, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 54 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 113
YS++ +G + PGESVLI SG G +A ++ R+ T+ S E+R L+
Sbjct: 1657 YSLV----VRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVG---SAEKRAYLQ 1709
Query: 114 A 114
A
Sbjct: 1710 A 1710
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
G ++PGE VLI +G G+G+A ++ AK I A +R ++ R G E V
Sbjct: 34 GRLSPGERVLIHSATG--GVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-LGVEYV--- 87
Query: 124 PAKGMKGAVQKAEEILAKT 142
G +V A+EIL T
Sbjct: 88 ---GDSRSVDFADEILELT 103
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 11 DVTELIGNTPLVYLNNIVNGCVAR-IAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPG 69
++ + + TP V ++I+N R + K E+ + S K R + I +GLI
Sbjct: 18 NIQDSVHLTP-VLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAI-----RGLIPDT 71
Query: 70 ----ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
++ +SGN G L + A + I +P + +++ ++A+GA +V ++P+
Sbjct: 72 LEGKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPS 131
Query: 126 KGMKGAVQKAEEILAKT 142
+ V A+ I+ +T
Sbjct: 132 DESRENV--AQRIIQET 146
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
T GN G G+A+ A +I P + ER + GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAV 132
++ +SGN G L + A + I +P + +++ ++A+GA +V +P+ + V
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENV 138
Query: 133 QK 134
K
Sbjct: 139 AK 140
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 113
+ GESVL+ SG G+GLA A+ Y L I A ++I+L+
Sbjct: 168 VKAGESVLVHGASG--GVGLAACQIARAYGLKILGTAGTEEGQKIVLQ 213
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 33/185 (17%)
Query: 38 KLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLI 97
K E + S R Y+M+S+ + L + +I ++GN G+A
Sbjct: 80 KREDKQRVFSFXLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAGQRLNCVAK 135
Query: 98 ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANP 157
I MP + + +RA G ++VL K A A E+ K Y + F++P
Sbjct: 136 IVMPTTTPQIKIDAVRALGGDVVLY--GKTFDEAQTHALELSEKDGLKY-IPPFDDPGVI 192
Query: 158 KIHYETTGPELWK------------GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKL 205
K T G E+ + G GG I + + F K+ PN K+
Sbjct: 193 K-GQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVAT-------------FFKQIAPNTKI 238
Query: 206 YGIEP 210
G+EP
Sbjct: 239 IGVEP 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,240,042
Number of Sequences: 62578
Number of extensions: 220579
Number of successful extensions: 435
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 51
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)