Query 027338
Match_columns 224
No_of_seqs 136 out of 1218
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 4.5E-56 9.9E-61 374.4 25.4 214 9-224 2-217 (300)
2 PLN03013 cysteine synthase 100.0 1.1E-55 2.5E-60 390.6 26.8 219 6-224 111-329 (429)
3 PLN02565 cysteine synthase 100.0 2E-55 4.2E-60 380.7 27.3 218 7-224 4-221 (322)
4 PLN02556 cysteine synthase/L-3 100.0 3E-54 6.5E-59 378.6 26.2 222 3-224 44-265 (368)
5 PRK11761 cysM cysteine synthas 100.0 4.9E-54 1.1E-58 368.4 25.4 210 7-218 1-210 (296)
6 PLN00011 cysteine synthase 100.0 6.4E-53 1.4E-57 365.6 27.8 215 8-222 7-221 (323)
7 TIGR01136 cysKM cysteine synth 100.0 1.5E-52 3.2E-57 360.0 27.2 209 13-222 2-210 (299)
8 TIGR01138 cysM cysteine syntha 100.0 2.5E-52 5.4E-57 357.0 26.1 205 12-218 2-206 (290)
9 TIGR01139 cysK cysteine syntha 100.0 6.8E-52 1.5E-56 355.7 26.9 207 13-221 2-209 (298)
10 COG1171 IlvA Threonine dehydra 100.0 1.3E-52 2.7E-57 359.4 19.8 205 7-218 14-218 (347)
11 PRK10717 cysteine synthase A; 100.0 1E-50 2.3E-55 352.9 26.2 209 7-217 2-217 (330)
12 KOG1252 Cystathionine beta-syn 100.0 1.3E-51 2.8E-56 346.7 17.9 217 7-223 41-260 (362)
13 PLN02356 phosphateglycerate ki 100.0 2.5E-50 5.5E-55 356.4 25.9 213 2-215 37-290 (423)
14 cd01561 CBS_like CBS_like: Thi 100.0 7.3E-50 1.6E-54 342.1 27.1 202 17-219 1-204 (291)
15 PRK08526 threonine dehydratase 100.0 1.1E-50 2.5E-55 360.0 22.0 202 7-217 9-210 (403)
16 PRK07476 eutB threonine dehydr 100.0 1.3E-50 2.9E-55 351.1 21.8 202 7-217 8-209 (322)
17 PLN02970 serine racemase 100.0 2.7E-50 5.9E-55 349.8 22.8 201 8-217 17-217 (328)
18 PRK08198 threonine dehydratase 100.0 2.5E-50 5.4E-55 359.2 22.6 202 7-217 11-212 (404)
19 PRK12483 threonine dehydratase 100.0 3E-50 6.5E-55 365.4 23.1 201 10-218 29-229 (521)
20 PRK08638 threonine dehydratase 100.0 4.2E-50 9.1E-55 348.8 22.0 202 7-217 16-217 (333)
21 PRK06382 threonine dehydratase 100.0 6.1E-50 1.3E-54 356.6 22.3 201 7-216 14-214 (406)
22 TIGR02991 ectoine_eutB ectoine 100.0 2.2E-49 4.7E-54 342.6 22.7 202 7-217 8-209 (317)
23 TIGR01137 cysta_beta cystathio 100.0 3.7E-49 7.9E-54 356.5 24.5 208 9-218 2-212 (454)
24 cd06447 D-Ser-dehyd D-Serine d 100.0 2.1E-49 4.5E-54 350.4 22.2 198 16-216 50-286 (404)
25 PRK07048 serine/threonine dehy 100.0 2.3E-49 5E-54 343.3 21.8 201 7-216 13-213 (321)
26 PRK06110 hypothetical protein; 100.0 2.6E-49 5.7E-54 343.0 21.6 202 7-217 10-211 (322)
27 PLN02550 threonine dehydratase 100.0 2.7E-49 5.8E-54 361.5 21.8 199 11-217 102-300 (591)
28 TIGR01127 ilvA_1Cterm threonin 100.0 4.2E-49 9E-54 348.9 21.3 190 19-217 1-190 (380)
29 PRK08639 threonine dehydratase 100.0 3.6E-49 7.8E-54 352.9 20.7 205 7-217 14-221 (420)
30 PRK06608 threonine dehydratase 100.0 7.1E-49 1.5E-53 341.8 22.1 201 7-216 12-212 (338)
31 TIGR02079 THD1 threonine dehyd 100.0 6.6E-49 1.4E-53 349.8 21.7 203 8-218 6-211 (409)
32 TIGR01124 ilvA_2Cterm threonin 100.0 7.1E-49 1.5E-53 356.2 22.3 201 10-218 9-209 (499)
33 cd06448 L-Ser-dehyd Serine deh 100.0 4.5E-49 9.7E-54 340.5 19.9 197 18-218 1-200 (316)
34 PRK07334 threonine dehydratase 100.0 5.4E-49 1.2E-53 350.3 20.6 203 7-218 12-214 (403)
35 PRK02991 D-serine dehydratase; 100.0 2.1E-48 4.6E-53 347.7 23.4 200 15-217 72-310 (441)
36 PRK06352 threonine synthase; V 100.0 1.6E-48 3.5E-53 341.3 21.4 200 10-219 20-225 (351)
37 PRK06815 hypothetical protein; 100.0 2.4E-48 5.2E-53 336.3 21.9 203 7-218 9-211 (317)
38 PRK09224 threonine dehydratase 100.0 2.2E-48 4.7E-53 354.1 22.4 201 10-218 12-212 (504)
39 cd01562 Thr-dehyd Threonine de 100.0 4.3E-48 9.4E-53 332.7 21.2 203 6-217 5-207 (304)
40 PRK06381 threonine synthase; V 100.0 1E-47 2.2E-52 332.8 23.5 198 12-217 9-214 (319)
41 PRK08813 threonine dehydratase 100.0 1E-47 2.2E-52 334.1 23.4 191 7-216 28-218 (349)
42 KOG1250 Threonine/serine dehyd 100.0 2E-48 4.2E-53 332.5 18.4 203 7-217 55-257 (457)
43 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.3E-47 4.9E-52 339.9 23.8 199 15-216 67-304 (431)
44 PRK08246 threonine dehydratase 100.0 1.7E-47 3.8E-52 329.9 22.2 197 7-218 12-208 (310)
45 PRK07409 threonine synthase; V 100.0 1.9E-47 4.2E-52 335.1 22.8 200 10-219 23-229 (353)
46 PRK08197 threonine synthase; V 100.0 1.6E-47 3.4E-52 340.0 21.7 198 11-217 72-278 (394)
47 PRK07591 threonine synthase; V 100.0 2.7E-47 5.9E-52 340.6 22.8 200 11-218 82-290 (421)
48 cd01563 Thr-synth_1 Threonine 100.0 4.4E-47 9.6E-52 329.4 21.3 198 10-217 14-219 (324)
49 PRK06721 threonine synthase; R 100.0 9.5E-47 2.1E-51 330.4 23.1 202 8-219 18-225 (352)
50 PRK06450 threonine synthase; V 100.0 2.1E-46 4.7E-51 325.9 22.3 186 11-217 51-243 (338)
51 PRK05638 threonine synthase; V 100.0 1.8E-46 3.9E-51 337.5 22.6 195 11-217 59-259 (442)
52 PRK06260 threonine synthase; V 100.0 3.1E-46 6.7E-51 332.0 21.6 197 11-217 60-265 (397)
53 KOG1251 Serine racemase [Signa 100.0 1.4E-46 2.9E-51 303.8 16.5 201 6-215 13-213 (323)
54 PLN02569 threonine synthase 100.0 1.9E-45 4.2E-50 332.0 23.4 202 11-217 126-337 (484)
55 cd00640 Trp-synth-beta_II Tryp 100.0 4.9E-45 1.1E-49 304.7 24.2 187 19-210 1-188 (244)
56 PRK08329 threonine synthase; V 100.0 2.8E-45 6.2E-50 320.5 23.2 190 12-218 58-253 (347)
57 PRK08206 diaminopropionate amm 100.0 5.3E-45 1.1E-49 323.7 22.2 206 8-217 32-271 (399)
58 TIGR01747 diampropi_NH3ly diam 100.0 3.3E-43 7.1E-48 309.6 22.1 206 8-218 13-251 (376)
59 TIGR00260 thrC threonine synth 100.0 2.1E-43 4.5E-48 306.9 19.4 200 9-217 14-222 (328)
60 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.1E-42 2.3E-47 308.2 21.5 202 14-218 37-270 (396)
61 PRK03910 D-cysteine desulfhydr 100.0 2.1E-42 4.4E-47 301.0 20.2 205 6-216 3-224 (331)
62 PRK13028 tryptophan synthase s 100.0 1E-41 2.3E-46 301.2 24.1 204 12-220 55-282 (402)
63 TIGR01415 trpB_rel pyridoxal-p 100.0 1.4E-41 3E-46 302.6 23.6 203 11-220 61-293 (419)
64 TIGR01275 ACC_deam_rel pyridox 100.0 7.6E-42 1.6E-46 295.1 20.8 192 15-213 4-207 (311)
65 TIGR00263 trpB tryptophan synt 100.0 1.8E-41 3.8E-46 300.1 22.4 198 11-213 42-255 (385)
66 PRK04346 tryptophan synthase s 100.0 1.8E-41 3.9E-46 299.3 22.3 197 12-213 51-263 (397)
67 PLN02618 tryptophan synthase, 100.0 2.6E-41 5.6E-46 298.9 23.2 200 9-213 56-276 (410)
68 PRK12391 tryptophan synthase s 100.0 2.6E-41 5.7E-46 301.2 23.3 201 13-219 72-301 (427)
69 PRK13802 bifunctional indole-3 100.0 4.5E-41 9.8E-46 312.2 24.6 200 12-216 319-540 (695)
70 cd06446 Trp-synth_B Tryptophan 100.0 4.1E-41 8.9E-46 296.1 22.6 201 12-218 27-244 (365)
71 KOG1481 Cysteine synthase [Ami 100.0 5.4E-42 1.2E-46 281.8 15.6 205 10-215 41-254 (391)
72 PF00291 PALP: Pyridoxal-phosp 100.0 3E-41 6.5E-46 289.8 19.7 194 12-217 1-207 (306)
73 cd06449 ACCD Aminocyclopropane 100.0 3.4E-41 7.3E-46 290.5 20.0 192 19-216 1-215 (307)
74 PRK12390 1-aminocyclopropane-1 100.0 4.8E-41 1E-45 293.0 20.9 207 6-217 3-231 (337)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 9.5E-41 2.1E-45 291.1 21.6 205 6-216 2-229 (337)
76 PRK14045 1-aminocyclopropane-1 100.0 1.1E-40 2.5E-45 289.7 19.7 201 6-212 9-221 (329)
77 TIGR03844 cysteate_syn cysteat 100.0 7.7E-41 1.7E-45 296.4 18.4 196 13-217 57-267 (398)
78 PRK13803 bifunctional phosphor 100.0 5.9E-39 1.3E-43 297.7 21.8 196 13-213 265-475 (610)
79 COG0498 ThrC Threonine synthas 100.0 2.8E-33 6E-38 246.7 17.2 199 11-218 69-278 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 8.9E-29 1.9E-33 207.1 16.2 195 13-212 50-259 (396)
81 COG2515 Acd 1-aminocyclopropan 100.0 8.4E-28 1.8E-32 200.5 16.9 205 4-214 1-219 (323)
82 COG1350 Predicted alternative 99.9 9E-27 2E-31 195.6 15.1 207 8-220 68-303 (432)
83 PRK09225 threonine synthase; V 99.9 4.3E-23 9.3E-28 185.6 18.7 176 18-209 88-279 (462)
84 cd01560 Thr-synth_2 Threonine 99.9 1.4E-22 3E-27 182.4 20.7 180 19-212 88-284 (460)
85 KOG1395 Tryptophan synthase be 99.9 2.2E-23 4.8E-28 176.6 12.1 194 14-212 118-327 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 6.3E-22 1.4E-26 165.3 14.0 204 13-219 73-315 (443)
87 PRK05993 short chain dehydroge 91.6 4.8 0.0001 33.7 12.0 52 70-124 5-56 (277)
88 PF00107 ADH_zinc_N: Zinc-bind 91.2 3.1 6.7E-05 30.3 9.4 40 82-124 3-42 (130)
89 PF03808 Glyco_tran_WecB: Glyc 91.2 2 4.3E-05 33.8 8.7 119 82-208 13-133 (172)
90 cd08230 glucose_DH Glucose deh 90.8 2.2 4.7E-05 37.2 9.4 54 66-120 170-223 (355)
91 TIGR03201 dearomat_had 6-hydro 90.2 4.6 9.9E-05 35.1 10.9 60 60-123 158-217 (349)
92 PRK12743 oxidoreductase; Provi 90.2 3.9 8.4E-05 33.7 10.0 53 71-123 4-58 (256)
93 cd06533 Glyco_transf_WecG_TagA 90.0 3.7 8.1E-05 32.2 9.3 121 82-210 11-133 (171)
94 COG0604 Qor NADPH:quinone redu 89.7 3.9 8.4E-05 35.6 10.0 59 63-124 137-195 (326)
95 PF05368 NmrA: NmrA-like famil 89.7 1.9 4.1E-05 35.1 7.6 50 73-123 2-51 (233)
96 PRK03562 glutathione-regulated 89.0 10 0.00022 36.2 12.9 52 71-125 401-452 (621)
97 cd08294 leukotriene_B4_DH_like 88.9 8.1 0.00018 32.8 11.3 59 62-123 137-195 (329)
98 PRK12481 2-deoxy-D-gluconate 3 88.8 8.2 0.00018 31.7 11.0 71 70-141 9-80 (251)
99 PRK08993 2-deoxy-D-gluconate 3 88.7 10 0.00023 31.0 11.6 53 70-123 11-63 (253)
100 PRK09424 pntA NAD(P) transhydr 88.6 13 0.00028 34.7 12.9 50 71-123 166-215 (509)
101 PRK08628 short chain dehydroge 88.5 7.9 0.00017 31.7 10.7 54 70-123 8-61 (258)
102 PRK08226 short chain dehydroge 88.4 7.1 0.00015 32.1 10.4 54 70-123 7-60 (263)
103 TIGR02819 fdhA_non_GSH formald 88.2 8.7 0.00019 34.3 11.4 58 61-121 178-235 (393)
104 PF00106 adh_short: short chai 87.9 6.7 0.00015 29.6 9.3 54 71-124 2-59 (167)
105 TIGR03366 HpnZ_proposed putati 87.9 4.9 0.00011 33.8 9.2 59 61-122 113-171 (280)
106 TIGR01064 pyruv_kin pyruvate k 87.7 20 0.00042 33.1 13.5 123 84-212 261-406 (473)
107 PRK03659 glutathione-regulated 87.7 14 0.00031 35.0 12.9 51 71-124 401-451 (601)
108 PRK08862 short chain dehydroge 87.6 8.1 0.00018 31.5 10.1 72 70-141 6-79 (227)
109 PRK10669 putative cation:proto 87.1 16 0.00035 34.2 12.9 52 71-125 418-469 (558)
110 KOG0025 Zn2+-binding dehydroge 86.9 4.3 9.3E-05 35.0 8.0 87 34-124 124-217 (354)
111 PF01041 DegT_DnrJ_EryC1: DegT 86.8 2.1 4.7E-05 37.6 6.6 86 71-156 41-128 (363)
112 PRK08063 enoyl-(acyl carrier p 86.8 14 0.00031 29.9 11.2 54 70-123 5-60 (250)
113 PRK07478 short chain dehydroge 86.7 10 0.00022 31.0 10.3 54 70-123 7-61 (254)
114 cd08274 MDR9 Medium chain dehy 86.2 8.9 0.00019 32.9 10.1 59 60-122 169-227 (350)
115 PF04127 DFP: DNA / pantothena 86.1 5.3 0.00011 32.0 7.9 62 72-142 21-83 (185)
116 TIGR02825 B4_12hDH leukotriene 86.1 12 0.00026 31.9 10.8 59 62-123 132-190 (325)
117 PRK08643 acetoin reductase; Va 85.7 15 0.00032 30.0 10.8 53 71-123 4-57 (256)
118 PRK05866 short chain dehydroge 85.6 11 0.00024 31.9 10.2 32 71-102 42-73 (293)
119 PF00070 Pyr_redox: Pyridine n 85.4 6.6 0.00014 26.3 7.1 51 73-123 2-61 (80)
120 PRK12823 benD 1,6-dihydroxycyc 85.2 11 0.00023 30.9 9.7 72 70-141 9-81 (260)
121 TIGR00670 asp_carb_tr aspartat 84.9 6.8 0.00015 33.9 8.5 59 63-123 145-208 (301)
122 cd08256 Zn_ADH2 Alcohol dehydr 84.9 16 0.00036 31.4 11.2 59 62-123 168-226 (350)
123 KOG0023 Alcohol dehydrogenase, 84.9 7.1 0.00015 34.2 8.4 62 60-124 173-234 (360)
124 cd01075 NAD_bind_Leu_Phe_Val_D 84.7 13 0.00029 29.8 9.8 68 51-121 7-77 (200)
125 TIGR00696 wecB_tagA_cpsF bacte 84.5 12 0.00025 29.8 9.1 96 82-187 13-112 (177)
126 cd08295 double_bond_reductase_ 84.3 18 0.00039 31.0 11.1 58 62-122 145-203 (338)
127 COG0800 Eda 2-keto-3-deoxy-6-p 84.3 21 0.00046 29.2 11.8 130 53-196 27-171 (211)
128 PRK06701 short chain dehydroge 84.0 21 0.00046 30.1 11.2 53 71-123 48-102 (290)
129 cd08281 liver_ADH_like1 Zinc-d 83.0 18 0.00038 31.7 10.6 59 62-123 185-243 (371)
130 PRK08703 short chain dehydroge 83.0 20 0.00043 28.9 10.3 33 70-102 7-39 (239)
131 PRK13656 trans-2-enoyl-CoA red 82.9 28 0.00061 31.3 11.7 59 39-100 12-73 (398)
132 TIGR03451 mycoS_dep_FDH mycoth 82.8 17 0.00037 31.6 10.4 59 61-122 169-227 (358)
133 PRK15408 autoinducer 2-binding 82.5 32 0.0007 29.9 17.6 146 55-210 71-243 (336)
134 PF00764 Arginosuc_synth: Argi 82.3 17 0.00038 32.5 10.2 129 73-207 1-138 (388)
135 PRK06079 enoyl-(acyl carrier p 82.3 17 0.00036 29.9 9.7 31 71-101 9-41 (252)
136 PRK07062 short chain dehydroge 82.2 22 0.00048 29.2 10.5 33 70-102 9-41 (265)
137 PLN03154 putative allyl alcoho 82.1 25 0.00053 30.6 11.1 59 62-123 152-211 (348)
138 PRK06935 2-deoxy-D-gluconate 3 82.1 17 0.00037 29.8 9.7 72 70-141 16-88 (258)
139 PRK06463 fabG 3-ketoacyl-(acyl 81.9 27 0.00058 28.5 11.8 68 70-140 8-75 (255)
140 TIGR02822 adh_fam_2 zinc-bindi 81.9 8.5 0.00018 33.2 8.1 57 61-121 158-214 (329)
141 PRK09147 succinyldiaminopimela 81.9 35 0.00076 30.1 12.2 110 44-155 64-179 (396)
142 cd08233 butanediol_DH_like (2R 81.9 25 0.00055 30.3 11.1 59 62-123 166-224 (351)
143 PRK09880 L-idonate 5-dehydroge 81.8 17 0.00037 31.4 10.0 60 61-123 162-221 (343)
144 cd08293 PTGR2 Prostaglandin re 81.7 27 0.0006 29.8 11.2 59 63-124 147-209 (345)
145 COG0623 FabI Enoyl-[acyl-carri 81.3 11 0.00024 31.5 7.8 68 110-184 26-93 (259)
146 COG1063 Tdh Threonine dehydrog 81.2 37 0.0008 29.8 14.5 51 72-124 171-222 (350)
147 PRK13394 3-hydroxybutyrate deh 81.2 20 0.00042 29.3 9.7 54 70-123 8-62 (262)
148 cd08277 liver_alcohol_DH_like 81.0 37 0.0008 29.6 13.8 57 62-121 178-234 (365)
149 COG2130 Putative NADP-dependen 81.0 15 0.00032 32.0 8.8 66 60-128 142-208 (340)
150 PRK06182 short chain dehydroge 81.0 28 0.00061 28.8 10.7 66 71-140 5-70 (273)
151 TIGR00561 pntA NAD(P) transhyd 80.4 10 0.00022 35.3 8.4 51 71-124 165-215 (511)
152 PRK06348 aspartate aminotransf 80.2 33 0.00072 30.2 11.4 84 71-155 90-175 (384)
153 PRK07231 fabG 3-ketoacyl-(acyl 80.2 29 0.00063 27.9 11.0 33 71-103 7-39 (251)
154 cd08296 CAD_like Cinnamyl alco 80.2 24 0.00052 30.2 10.3 54 65-122 160-213 (333)
155 cd08287 FDH_like_ADH3 formalde 80.0 29 0.00063 29.7 10.8 58 63-123 163-220 (345)
156 TIGR03538 DapC_gpp succinyldia 80.0 42 0.0009 29.6 12.4 111 44-156 63-179 (393)
157 cd08297 CAD3 Cinnamyl alcohol 79.9 23 0.00049 30.3 10.1 54 65-121 162-215 (341)
158 PRK07550 hypothetical protein; 79.6 42 0.00092 29.4 12.0 76 45-124 67-143 (386)
159 COG1064 AdhP Zn-dependent alco 79.5 15 0.00032 32.4 8.6 62 59-124 157-218 (339)
160 KOG2862 Alanine-glyoxylate ami 79.4 36 0.00079 29.8 10.6 83 71-154 69-154 (385)
161 PRK08340 glucose-1-dehydrogena 79.1 34 0.00074 28.0 11.6 31 71-101 2-32 (259)
162 PRK08589 short chain dehydroge 79.0 20 0.00044 29.8 9.2 72 70-141 7-79 (272)
163 cd08292 ETR_like_2 2-enoyl thi 78.8 26 0.00056 29.5 10.0 57 62-121 133-189 (324)
164 cd06324 PBP1_ABC_sugar_binding 78.7 39 0.00084 28.5 18.4 45 164-211 192-240 (305)
165 PRK05872 short chain dehydroge 78.6 29 0.00062 29.3 10.2 31 70-100 10-40 (296)
166 KOG0024 Sorbitol dehydrogenase 78.6 24 0.00052 31.0 9.4 64 58-124 159-222 (354)
167 cd08289 MDR_yhfp_like Yhfp put 78.5 21 0.00046 30.2 9.4 51 69-122 147-197 (326)
168 KOG1205 Predicted dehydrogenas 78.3 25 0.00053 30.2 9.5 71 71-142 14-89 (282)
169 KOG1201 Hydroxysteroid 17-beta 78.2 32 0.00069 29.7 10.0 74 69-143 38-113 (300)
170 PRK05826 pyruvate kinase; Prov 78.0 49 0.0011 30.5 11.9 124 84-212 263-406 (465)
171 cd08239 THR_DH_like L-threonin 78.0 29 0.00063 29.7 10.2 61 60-123 155-215 (339)
172 PRK07109 short chain dehydroge 78.0 16 0.00035 31.7 8.6 72 70-141 9-82 (334)
173 PLN02740 Alcohol dehydrogenase 78.0 48 0.001 29.1 14.2 57 62-121 192-248 (381)
174 PRK12937 short chain dehydroge 77.7 32 0.0007 27.6 9.9 55 70-124 6-62 (245)
175 TIGR01751 crot-CoA-red crotony 77.6 17 0.00037 32.2 8.8 56 64-122 185-240 (398)
176 PRK06197 short chain dehydroge 77.4 32 0.00069 29.1 10.2 32 71-102 18-49 (306)
177 PRK12828 short chain dehydroge 77.2 31 0.00066 27.5 9.6 55 70-124 8-63 (239)
178 PF01210 NAD_Gly3P_dh_N: NAD-d 77.0 5.1 0.00011 30.8 4.6 40 73-115 2-41 (157)
179 PRK06720 hypothetical protein; 76.8 33 0.00072 26.7 10.7 71 71-141 18-90 (169)
180 PRK06139 short chain dehydroge 76.7 16 0.00035 31.7 8.2 54 70-123 8-62 (330)
181 PRK05854 short chain dehydroge 76.7 34 0.00073 29.3 10.1 32 71-102 16-47 (313)
182 PRK10309 galactitol-1-phosphat 76.6 31 0.00067 29.7 10.0 59 61-122 153-211 (347)
183 PRK07832 short chain dehydroge 76.0 43 0.00094 27.6 10.7 31 71-101 2-32 (272)
184 cd08301 alcohol_DH_plants Plan 76.0 23 0.00051 30.8 9.1 59 62-123 181-239 (369)
185 cd08291 ETR_like_1 2-enoyl thi 75.9 35 0.00076 29.0 10.0 51 71-124 145-196 (324)
186 cd00401 AdoHcyase S-adenosyl-L 75.9 13 0.00029 33.6 7.6 53 64-120 197-249 (413)
187 PF11760 CbiG_N: Cobalamin syn 75.9 6.5 0.00014 27.3 4.3 50 167-216 3-52 (84)
188 PRK07454 short chain dehydroge 75.8 26 0.00057 28.2 8.9 70 71-140 8-79 (241)
189 PRK05396 tdh L-threonine 3-deh 75.8 22 0.00047 30.5 8.8 52 68-122 163-214 (341)
190 PLN00175 aminotransferase fami 75.6 50 0.0011 29.5 11.3 83 72-155 117-200 (413)
191 PRK12826 3-ketoacyl-(acyl-carr 75.6 31 0.00067 27.7 9.3 54 70-123 7-61 (251)
192 PF13561 adh_short_C2: Enoyl-( 75.6 20 0.00043 29.1 8.1 64 77-141 4-69 (241)
193 TIGR01832 kduD 2-deoxy-D-gluco 75.5 31 0.00067 27.9 9.3 53 70-123 6-58 (248)
194 TIGR03537 DapC succinyldiamino 75.3 54 0.0012 28.4 11.7 110 44-156 35-150 (350)
195 PRK14030 glutamate dehydrogena 75.3 22 0.00048 32.5 8.8 59 50-108 208-274 (445)
196 PTZ00354 alcohol dehydrogenase 75.2 49 0.0011 27.8 11.1 57 64-123 136-192 (334)
197 PF00185 OTCace: Aspartate/orn 75.2 14 0.0003 28.6 6.6 46 78-123 12-65 (158)
198 PRK05876 short chain dehydroge 75.0 32 0.0007 28.7 9.4 72 70-141 7-80 (275)
199 COG0399 WecE Predicted pyridox 74.9 45 0.00098 29.8 10.5 118 38-165 26-145 (374)
200 cd08242 MDR_like Medium chain 74.8 28 0.00061 29.4 9.1 58 61-122 148-205 (319)
201 cd08285 NADP_ADH NADP(H)-depen 74.8 45 0.00098 28.7 10.5 58 61-121 159-216 (351)
202 PRK06128 oxidoreductase; Provi 74.6 48 0.001 28.0 10.5 71 70-140 56-130 (300)
203 PRK08303 short chain dehydroge 74.5 37 0.0008 29.0 9.8 72 70-141 9-92 (305)
204 PRK10754 quinone oxidoreductas 74.2 53 0.0011 27.8 11.2 57 62-121 134-190 (327)
205 cd08288 MDR_yhdh Yhdh putative 74.2 27 0.00058 29.4 8.9 52 68-122 146-197 (324)
206 PRK05786 fabG 3-ketoacyl-(acyl 74.1 27 0.00058 28.0 8.5 34 70-103 6-39 (238)
207 PRK05557 fabG 3-ketoacyl-(acyl 74.1 37 0.0008 27.1 9.3 54 71-124 7-62 (248)
208 PRK08277 D-mannonate oxidoredu 74.1 30 0.00065 28.7 9.0 54 70-123 11-65 (278)
209 cd08269 Zn_ADH9 Alcohol dehydr 74.1 51 0.0011 27.5 11.1 59 61-122 122-180 (312)
210 PRK07523 gluconate 5-dehydroge 74.1 27 0.00059 28.5 8.6 54 70-123 11-65 (255)
211 PRK07366 succinyldiaminopimela 74.0 59 0.0013 28.5 11.2 109 45-156 68-179 (388)
212 TIGR02818 adh_III_F_hyde S-(hy 73.8 30 0.00065 30.3 9.3 58 62-122 179-236 (368)
213 TIGR01316 gltA glutamate synth 73.7 17 0.00037 33.0 7.9 53 71-123 273-330 (449)
214 PRK07097 gluconate 5-dehydroge 73.6 29 0.00062 28.6 8.7 71 70-140 11-83 (265)
215 PRK08017 oxidoreductase; Provi 73.5 41 0.00088 27.3 9.5 51 71-124 4-54 (256)
216 PRK06194 hypothetical protein; 73.3 44 0.00094 27.8 9.8 54 71-124 8-62 (287)
217 cd08258 Zn_ADH4 Alcohol dehydr 73.3 54 0.0012 27.7 10.5 56 63-120 159-214 (306)
218 PRK08261 fabG 3-ketoacyl-(acyl 73.3 46 0.001 29.9 10.6 71 69-140 210-280 (450)
219 PRK12771 putative glutamate sy 73.2 9.9 0.00021 35.6 6.3 55 67-122 135-207 (564)
220 PRK07806 short chain dehydroge 73.1 48 0.001 26.8 10.1 54 70-123 7-62 (248)
221 TIGR00692 tdh L-threonine 3-de 73.1 33 0.00071 29.4 9.2 53 66-121 159-211 (340)
222 PRK06114 short chain dehydroge 72.8 47 0.001 27.1 9.7 54 70-123 9-64 (254)
223 PRK07791 short chain dehydroge 72.5 48 0.001 27.8 9.9 72 70-141 7-89 (286)
224 cd08246 crotonyl_coA_red croto 72.4 17 0.00038 32.0 7.4 55 64-121 189-243 (393)
225 cd08231 MDR_TM0436_like Hypoth 72.1 64 0.0014 27.8 12.0 54 64-121 173-227 (361)
226 PRK10083 putative oxidoreducta 71.9 48 0.001 28.2 9.9 60 60-122 152-212 (339)
227 PRK05693 short chain dehydroge 71.9 55 0.0012 27.0 10.5 64 71-138 3-66 (274)
228 cd08300 alcohol_DH_class_III c 71.8 28 0.0006 30.4 8.5 58 62-122 180-237 (368)
229 PRK02610 histidinol-phosphate 71.7 30 0.00065 30.3 8.8 85 72-156 93-182 (374)
230 PRK08912 hypothetical protein; 71.6 70 0.0015 28.0 12.5 77 45-124 63-140 (387)
231 PRK06172 short chain dehydroge 71.6 34 0.00074 27.8 8.6 54 70-123 8-62 (253)
232 cd05282 ETR_like 2-enoyl thioe 71.2 52 0.0011 27.6 9.9 56 63-121 133-188 (323)
233 PRK07666 fabG 3-ketoacyl-(acyl 71.1 40 0.00086 27.1 8.9 53 71-123 9-62 (239)
234 COG0078 ArgF Ornithine carbamo 71.1 51 0.0011 28.6 9.5 56 69-124 153-214 (310)
235 PRK08306 dipicolinate synthase 71.1 49 0.0011 28.4 9.7 47 71-120 153-199 (296)
236 PRK10538 malonic semialdehyde 70.9 44 0.00094 27.2 9.1 50 71-123 2-52 (248)
237 PRK12745 3-ketoacyl-(acyl-carr 70.8 45 0.00098 27.0 9.2 70 71-140 4-76 (256)
238 cd08298 CAD2 Cinnamyl alcohol 70.8 33 0.00071 29.1 8.6 55 62-120 161-215 (329)
239 PRK12939 short chain dehydroge 70.6 40 0.00086 27.1 8.8 54 70-123 8-62 (250)
240 cd08243 quinone_oxidoreductase 70.5 61 0.0013 26.9 10.8 56 64-122 138-193 (320)
241 PRK07890 short chain dehydroge 70.3 40 0.00087 27.3 8.8 54 70-123 6-60 (258)
242 PRK09257 aromatic amino acid a 70.3 63 0.0014 28.5 10.6 78 44-124 68-149 (396)
243 PRK12935 acetoacetyl-CoA reduc 70.2 40 0.00087 27.2 8.7 55 70-124 7-63 (247)
244 PF03808 Glyco_tran_WecB: Glyc 70.1 39 0.00085 26.4 8.2 66 56-125 40-110 (172)
245 TIGR02853 spore_dpaA dipicolin 70.1 69 0.0015 27.3 10.6 88 29-119 110-197 (287)
246 PRK07792 fabG 3-ketoacyl-(acyl 69.7 43 0.00092 28.5 9.1 55 70-124 13-69 (306)
247 cd08284 FDH_like_2 Glutathione 69.6 35 0.00076 29.1 8.6 54 64-120 163-216 (344)
248 PRK08068 transaminase; Reviewe 69.4 78 0.0017 27.8 11.0 108 45-155 70-180 (389)
249 PF13460 NAD_binding_10: NADH( 69.4 11 0.00024 29.1 5.0 47 73-124 2-48 (183)
250 cd08259 Zn_ADH5 Alcohol dehydr 69.2 43 0.00093 28.2 9.0 53 64-119 158-210 (332)
251 PRK05653 fabG 3-ketoacyl-(acyl 69.1 44 0.00095 26.6 8.7 53 71-123 7-60 (246)
252 PRK08278 short chain dehydroge 69.1 56 0.0012 27.1 9.5 54 70-123 7-68 (273)
253 PRK06181 short chain dehydroge 69.0 39 0.00084 27.6 8.5 53 71-123 3-56 (263)
254 PRK12384 sorbitol-6-phosphate 68.9 61 0.0013 26.3 10.6 32 71-102 4-35 (259)
255 COG0300 DltE Short-chain dehyd 68.9 42 0.00091 28.5 8.6 71 70-140 7-80 (265)
256 KOG0634 Aromatic amino acid am 68.9 27 0.00058 31.8 7.6 52 73-125 126-178 (472)
257 cd08267 MDR1 Medium chain dehy 68.8 41 0.00088 28.0 8.7 53 64-120 139-191 (319)
258 PRK06179 short chain dehydroge 68.8 46 0.00099 27.3 8.9 32 71-102 6-37 (270)
259 PRK06483 dihydromonapterin red 68.8 59 0.0013 26.1 9.9 67 71-140 4-70 (236)
260 cd05286 QOR2 Quinone oxidoredu 68.8 65 0.0014 26.5 10.8 58 63-123 131-188 (320)
261 PRK08217 fabG 3-ketoacyl-(acyl 68.6 43 0.00094 26.9 8.6 54 70-123 6-60 (253)
262 PRK09134 short chain dehydroge 68.6 61 0.0013 26.4 9.5 54 70-123 10-65 (258)
263 PRK11706 TDP-4-oxo-6-deoxy-D-g 68.5 48 0.001 29.2 9.4 55 71-125 47-101 (375)
264 COG2242 CobL Precorrin-6B meth 68.5 42 0.00091 26.9 8.0 133 66-216 32-167 (187)
265 TIGR02824 quinone_pig3 putativ 68.4 67 0.0015 26.6 11.0 58 61-121 132-189 (325)
266 COG1751 Uncharacterized conser 68.2 55 0.0012 25.5 8.2 74 45-123 8-90 (186)
267 PRK12938 acetyacetyl-CoA reduc 68.2 42 0.0009 27.1 8.4 53 71-123 5-59 (246)
268 PLN02827 Alcohol dehydrogenase 68.1 51 0.0011 29.0 9.4 57 62-121 187-243 (378)
269 PF08659 KR: KR domain; Inter 67.9 36 0.00079 26.6 7.7 71 71-141 2-78 (181)
270 PRK12744 short chain dehydroge 67.8 55 0.0012 26.7 9.1 54 70-123 9-67 (257)
271 PRK06841 short chain dehydroge 67.8 54 0.0012 26.5 9.0 33 70-102 16-48 (255)
272 TIGR03540 DapC_direct LL-diami 67.6 85 0.0018 27.4 11.4 83 72-155 93-177 (383)
273 CHL00194 ycf39 Ycf39; Provisio 67.6 24 0.00052 30.1 7.1 32 71-102 2-33 (317)
274 PRK05867 short chain dehydroge 67.3 48 0.001 27.0 8.6 54 70-123 10-64 (253)
275 PRK06138 short chain dehydroge 67.1 65 0.0014 25.9 9.6 69 71-140 7-77 (252)
276 PF09837 DUF2064: Uncharacteri 67.1 48 0.001 24.4 9.9 98 85-188 2-100 (122)
277 PF07279 DUF1442: Protein of u 67.1 22 0.00049 29.2 6.3 47 71-117 43-94 (218)
278 cd08264 Zn_ADH_like2 Alcohol d 67.1 39 0.00084 28.6 8.3 39 62-100 156-194 (325)
279 cd05288 PGDH Prostaglandin deh 67.1 76 0.0017 26.7 10.9 56 63-121 140-196 (329)
280 PRK06124 gluconate 5-dehydroge 67.0 47 0.001 27.0 8.6 54 70-123 12-66 (256)
281 PRK12429 3-hydroxybutyrate deh 66.9 56 0.0012 26.4 8.9 54 70-123 5-59 (258)
282 PRK08085 gluconate 5-dehydroge 66.9 52 0.0011 26.7 8.8 54 70-123 10-64 (254)
283 cd05211 NAD_bind_Glu_Leu_Phe_V 66.8 35 0.00076 27.9 7.6 54 51-104 4-57 (217)
284 PRK12809 putative oxidoreducta 66.8 41 0.00088 32.1 9.0 53 71-123 311-381 (639)
285 cd08278 benzyl_alcohol_DH Benz 66.7 87 0.0019 27.2 10.8 59 62-123 180-238 (365)
286 PRK09422 ethanol-active dehydr 66.6 72 0.0016 27.1 9.9 58 62-123 156-214 (338)
287 cd08244 MDR_enoyl_red Possible 66.5 77 0.0017 26.5 10.9 57 61-120 135-191 (324)
288 cd08250 Mgc45594_like Mgc45594 66.5 79 0.0017 26.7 11.2 55 64-121 135-189 (329)
289 cd05313 NAD_bind_2_Glu_DH NAD( 66.5 37 0.00079 28.7 7.7 52 50-101 18-69 (254)
290 cd08240 6_hydroxyhexanoate_dh_ 66.3 67 0.0015 27.5 9.7 54 66-122 173-226 (350)
291 COG0075 Serine-pyruvate aminot 66.2 39 0.00085 30.3 8.2 35 67-102 78-112 (383)
292 PRK06949 short chain dehydroge 66.1 44 0.00095 27.1 8.2 33 70-102 10-42 (258)
293 cd08261 Zn_ADH7 Alcohol dehydr 66.1 83 0.0018 26.8 10.5 54 62-119 153-206 (337)
294 PRK12831 putative oxidoreducta 66.1 32 0.00069 31.5 7.9 53 71-123 282-339 (464)
295 KOG0022 Alcohol dehydrogenase, 66.0 94 0.002 27.4 11.6 117 61-214 185-301 (375)
296 TIGR02415 23BDH acetoin reduct 65.9 58 0.0013 26.3 8.9 53 71-123 2-55 (254)
297 PRK07035 short chain dehydroge 65.8 57 0.0012 26.4 8.8 53 71-123 10-63 (252)
298 cd05188 MDR Medium chain reduc 65.8 69 0.0015 25.7 9.7 54 64-121 130-183 (271)
299 cd08253 zeta_crystallin Zeta-c 65.3 78 0.0017 26.2 10.7 55 64-121 140-194 (325)
300 PLN02702 L-idonate 5-dehydroge 65.2 65 0.0014 27.9 9.5 58 62-122 175-232 (364)
301 PRK07069 short chain dehydroge 65.2 71 0.0015 25.7 9.9 31 72-102 2-32 (251)
302 PTZ00079 NADP-specific glutama 65.1 50 0.0011 30.3 8.8 54 50-103 217-270 (454)
303 cd08282 PFDH_like Pseudomonas 65.1 53 0.0012 28.7 9.0 55 62-119 170-224 (375)
304 PRK06836 aspartate aminotransf 65.1 86 0.0019 27.7 10.4 83 72-155 98-181 (394)
305 TIGR03206 benzo_BadH 2-hydroxy 65.0 54 0.0012 26.3 8.5 55 70-124 4-59 (250)
306 PRK06077 fabG 3-ketoacyl-(acyl 65.0 50 0.0011 26.6 8.3 53 71-123 8-62 (252)
307 PRK08936 glucose-1-dehydrogena 64.7 77 0.0017 25.9 10.1 54 70-123 8-63 (261)
308 PRK07326 short chain dehydroge 64.6 71 0.0015 25.4 9.4 32 70-101 7-38 (237)
309 PRK07814 short chain dehydroge 64.4 57 0.0012 26.8 8.6 53 70-122 11-64 (263)
310 PRK10537 voltage-gated potassi 64.4 1.1E+02 0.0024 27.5 12.3 49 71-124 241-289 (393)
311 cd08245 CAD Cinnamyl alcohol d 64.3 60 0.0013 27.5 9.0 57 62-122 156-212 (330)
312 cd08249 enoyl_reductase_like e 64.3 49 0.0011 28.4 8.5 52 67-122 153-204 (339)
313 cd05281 TDH Threonine dehydrog 64.3 49 0.0011 28.3 8.5 52 67-121 162-213 (341)
314 cd05278 FDH_like Formaldehyde 64.1 62 0.0014 27.5 9.1 56 62-120 161-216 (347)
315 PRK05650 short chain dehydroge 64.1 75 0.0016 26.1 9.3 53 71-123 2-55 (270)
316 PRK07677 short chain dehydroge 63.9 62 0.0014 26.2 8.7 53 71-123 3-56 (252)
317 cd05279 Zn_ADH1 Liver alcohol 63.9 89 0.0019 27.2 10.1 54 62-118 177-230 (365)
318 PRK12414 putative aminotransfe 63.9 1E+02 0.0022 27.1 11.3 83 72-155 92-175 (384)
319 PRK08213 gluconate 5-dehydroge 63.7 63 0.0014 26.3 8.7 55 70-124 13-68 (259)
320 TIGR01831 fabG_rel 3-oxoacyl-( 63.6 75 0.0016 25.4 9.6 51 73-123 2-54 (239)
321 cd08251 polyketide_synthase po 63.4 83 0.0018 25.8 10.9 57 61-120 113-169 (303)
322 PRK06953 short chain dehydroge 63.3 74 0.0016 25.2 9.8 51 71-124 3-53 (222)
323 TIGR02817 adh_fam_1 zinc-bindi 63.3 65 0.0014 27.3 9.0 50 69-121 149-199 (336)
324 PRK07067 sorbitol dehydrogenas 62.7 74 0.0016 25.8 9.0 32 71-102 8-39 (257)
325 PRK06500 short chain dehydroge 62.6 79 0.0017 25.3 9.3 51 70-123 7-58 (249)
326 PRK00779 ornithine carbamoyltr 62.6 56 0.0012 28.2 8.3 61 62-123 146-209 (304)
327 TIGR02823 oxido_YhdH putative 62.6 67 0.0015 27.0 8.9 54 66-122 142-196 (323)
328 PLN02342 ornithine carbamoyltr 62.5 49 0.0011 29.3 8.0 60 63-123 189-251 (348)
329 COG1167 ARO8 Transcriptional r 62.4 61 0.0013 29.6 9.0 52 72-125 157-209 (459)
330 cd08260 Zn_ADH6 Alcohol dehydr 62.3 99 0.0022 26.4 10.4 52 63-118 160-211 (345)
331 cd08290 ETR 2-enoyl thioester 62.3 56 0.0012 27.8 8.5 60 64-123 142-202 (341)
332 PRK08264 short chain dehydroge 62.0 44 0.00095 26.8 7.4 32 71-102 8-40 (238)
333 PRK07774 short chain dehydroge 62.0 75 0.0016 25.6 8.8 54 70-123 7-61 (250)
334 PRK06947 glucose-1-dehydrogena 61.9 55 0.0012 26.4 8.0 53 71-123 4-58 (248)
335 PRK08177 short chain dehydroge 61.8 80 0.0017 25.1 9.4 65 71-138 3-67 (225)
336 PRK11891 aspartate carbamoyltr 61.7 52 0.0011 30.0 8.2 45 79-123 253-300 (429)
337 cd08248 RTN4I1 Human Reticulon 61.7 55 0.0012 27.9 8.3 49 69-121 163-211 (350)
338 PRK11658 UDP-4-amino-4-deoxy-L 61.6 81 0.0018 27.8 9.5 53 72-124 50-102 (379)
339 cd05285 sorbitol_DH Sorbitol d 61.4 85 0.0018 26.8 9.5 59 61-122 155-213 (343)
340 PRK09730 putative NAD(P)-bindi 61.3 83 0.0018 25.1 9.2 53 71-123 3-57 (247)
341 PRK08265 short chain dehydroge 61.2 90 0.0019 25.6 9.2 52 70-123 7-58 (261)
342 COG2894 MinD Septum formation 61.1 45 0.00097 27.9 6.9 115 85-214 23-149 (272)
343 PRK05717 oxidoreductase; Valid 61.0 89 0.0019 25.4 9.4 52 70-123 11-62 (255)
344 cd05284 arabinose_DH_like D-ar 60.9 64 0.0014 27.4 8.6 54 65-122 164-218 (340)
345 PRK09135 pteridine reductase; 60.9 84 0.0018 25.1 10.6 33 71-103 8-40 (249)
346 PRK09242 tropinone reductase; 60.8 89 0.0019 25.3 9.3 54 70-123 10-66 (257)
347 PRK06200 2,3-dihydroxy-2,3-dih 60.7 87 0.0019 25.6 9.1 69 70-141 7-77 (263)
348 TIGR01963 PHB_DH 3-hydroxybuty 60.7 68 0.0015 25.8 8.3 53 71-123 3-56 (255)
349 PRK06198 short chain dehydroge 60.7 90 0.0019 25.3 9.3 53 71-123 8-62 (260)
350 KOG1197 Predicted quinone oxid 60.6 1.1E+02 0.0023 26.3 9.2 55 61-118 139-193 (336)
351 PRK09291 short chain dehydroge 60.5 39 0.00085 27.4 6.9 52 71-122 4-56 (257)
352 PF01262 AlaDh_PNT_C: Alanine 60.4 42 0.00092 25.9 6.7 50 71-123 21-70 (168)
353 PRK09545 znuA high-affinity zi 60.4 85 0.0018 27.1 9.1 85 84-172 212-306 (311)
354 cd05280 MDR_yhdh_yhfp Yhdh and 60.0 92 0.002 26.0 9.3 48 71-121 149-196 (325)
355 PRK09072 short chain dehydroge 59.9 73 0.0016 26.0 8.5 33 70-102 6-38 (263)
356 PRK06207 aspartate aminotransf 59.7 1.3E+02 0.0028 26.8 12.3 77 45-124 78-155 (405)
357 PRK05565 fabG 3-ketoacyl-(acyl 59.7 85 0.0019 25.0 8.7 53 71-123 7-61 (247)
358 PRK06482 short chain dehydroge 59.5 70 0.0015 26.3 8.4 32 71-102 4-35 (276)
359 PRK08192 aspartate carbamoyltr 59.5 56 0.0012 28.7 7.9 45 79-123 171-218 (338)
360 PRK04870 histidinol-phosphate 59.4 68 0.0015 27.7 8.5 83 72-155 83-166 (356)
361 PRK12825 fabG 3-ketoacyl-(acyl 59.2 89 0.0019 24.8 9.7 53 71-123 8-62 (249)
362 PRK07904 short chain dehydroge 59.1 99 0.0021 25.3 10.0 68 70-138 9-82 (253)
363 cd08286 FDH_like_ADH2 formalde 59.1 81 0.0018 26.9 8.9 55 63-121 161-216 (345)
364 PLN02586 probable cinnamyl alc 59.0 57 0.0012 28.5 8.0 55 64-121 179-233 (360)
365 PRK06505 enoyl-(acyl carrier p 59.0 1E+02 0.0023 25.5 9.6 71 70-141 8-82 (271)
366 COG0159 TrpA Tryptophan syntha 59.0 1E+02 0.0022 26.2 9.0 68 51-123 109-178 (265)
367 PRK06702 O-acetylhomoserine am 58.9 1.3E+02 0.0028 27.4 10.4 79 72-155 78-160 (432)
368 TIGR03590 PseG pseudaminic aci 58.8 1.1E+02 0.0024 25.8 10.2 81 35-124 2-88 (279)
369 PRK05166 histidinol-phosphate 58.8 62 0.0013 28.3 8.2 83 72-155 90-172 (371)
370 PRK06290 aspartate aminotransf 58.6 1.4E+02 0.003 26.7 11.6 52 72-124 108-159 (410)
371 cd05283 CAD1 Cinnamyl alcohol 58.5 86 0.0019 26.8 9.0 52 66-121 167-218 (337)
372 PRK07985 oxidoreductase; Provi 58.3 92 0.002 26.2 9.0 53 71-123 51-106 (294)
373 cd08276 MDR7 Medium chain dehy 58.3 1.1E+02 0.0024 25.6 11.1 56 63-122 155-210 (336)
374 PRK07324 transaminase; Validat 58.3 54 0.0012 28.7 7.8 83 72-155 82-166 (373)
375 cd08299 alcohol_DH_class_I_II_ 58.2 80 0.0017 27.7 8.8 55 61-118 183-237 (373)
376 PF02310 B12-binding: B12 bind 58.2 65 0.0014 22.9 7.2 94 83-185 18-114 (121)
377 PRK08945 putative oxoacyl-(acy 58.2 98 0.0021 24.9 9.1 33 70-102 13-45 (247)
378 cd08272 MDR6 Medium chain dehy 58.2 1.1E+02 0.0023 25.4 10.6 58 62-123 138-195 (326)
379 PRK06484 short chain dehydroge 58.1 1.1E+02 0.0025 27.8 10.2 32 70-101 270-301 (520)
380 PRK06924 short chain dehydroge 58.1 97 0.0021 24.9 8.9 66 71-138 3-70 (251)
381 cd07766 DHQ_Fe-ADH Dehydroquin 58.1 1.2E+02 0.0026 26.1 11.5 35 175-211 78-113 (332)
382 PF02887 PK_C: Pyruvate kinase 58.1 27 0.00059 25.3 5.0 43 164-212 7-49 (117)
383 PRK11749 dihydropyrimidine deh 58.0 67 0.0015 29.1 8.5 53 71-123 274-332 (457)
384 TIGR02379 ECA_wecE TDP-4-keto- 58.0 89 0.0019 27.6 9.1 55 71-125 47-101 (376)
385 PRK14807 histidinol-phosphate 57.9 72 0.0016 27.6 8.4 83 72-155 78-161 (351)
386 PRK06113 7-alpha-hydroxysteroi 57.8 86 0.0019 25.5 8.5 54 70-123 12-66 (255)
387 PLN02178 cinnamyl-alcohol dehy 57.7 38 0.00083 29.9 6.7 52 67-121 177-228 (375)
388 COG1922 WecG Teichoic acid bio 57.5 83 0.0018 26.6 8.2 98 73-173 113-215 (253)
389 PRK08251 short chain dehydroge 57.5 99 0.0022 24.8 9.3 53 71-123 4-59 (248)
390 cd08279 Zn_ADH_class_III Class 57.5 1.3E+02 0.0028 26.1 10.8 56 62-120 176-231 (363)
391 TIGR00658 orni_carb_tr ornithi 57.4 84 0.0018 27.1 8.5 49 75-123 154-208 (304)
392 PRK07060 short chain dehydroge 57.3 62 0.0014 25.9 7.5 53 70-125 10-63 (245)
393 TIGR03325 BphB_TodD cis-2,3-di 57.3 88 0.0019 25.5 8.5 51 70-123 6-57 (262)
394 PRK05839 hypothetical protein; 57.3 1.3E+02 0.0029 26.2 10.7 78 44-124 59-138 (374)
395 PRK12810 gltD glutamate syntha 57.2 55 0.0012 29.9 7.8 52 71-122 144-213 (471)
396 PRK06101 short chain dehydroge 57.1 1E+02 0.0022 24.9 8.7 63 71-137 3-67 (240)
397 PRK06180 short chain dehydroge 57.0 92 0.002 25.8 8.7 32 71-102 6-37 (277)
398 cd08254 hydroxyacyl_CoA_DH 6-h 56.9 1.2E+02 0.0026 25.5 10.6 57 63-123 160-216 (338)
399 PRK15454 ethanol dehydrogenase 56.8 63 0.0014 28.9 8.0 22 165-189 98-119 (395)
400 PRK07775 short chain dehydroge 56.7 1E+02 0.0023 25.4 8.9 53 71-123 12-65 (274)
401 PRK14031 glutamate dehydrogena 56.4 53 0.0012 30.1 7.4 52 50-101 208-259 (444)
402 PRK06354 pyruvate kinase; Prov 56.4 1.9E+02 0.004 27.7 12.9 124 83-212 267-410 (590)
403 PRK13982 bifunctional SbtC-lik 56.4 16 0.00035 33.7 4.2 43 76-124 279-321 (475)
404 TIGR01318 gltD_gamma_fam gluta 56.3 52 0.0011 30.1 7.5 51 71-121 142-210 (467)
405 PLN02623 pyruvate kinase 56.3 1.9E+02 0.004 27.6 12.0 122 83-212 366-509 (581)
406 PRK09414 glutamate dehydrogena 56.3 58 0.0013 29.9 7.6 52 50-101 212-263 (445)
407 PLN02583 cinnamoyl-CoA reducta 56.2 63 0.0014 27.2 7.6 33 70-102 7-39 (297)
408 cd08270 MDR4 Medium chain dehy 56.2 1.1E+02 0.0024 25.4 9.0 48 68-118 132-179 (305)
409 TIGR01830 3oxo_ACP_reduc 3-oxo 56.1 1E+02 0.0022 24.5 8.5 51 73-123 2-54 (239)
410 PRK06484 short chain dehydroge 56.1 1.4E+02 0.0029 27.4 10.3 31 70-100 6-36 (520)
411 PRK08594 enoyl-(acyl carrier p 55.9 1.1E+02 0.0025 25.0 10.0 70 71-141 9-84 (257)
412 cd08238 sorbose_phosphate_red 55.9 50 0.0011 29.4 7.2 59 63-123 170-238 (410)
413 cd08550 GlyDH-like Glycerol_de 55.8 65 0.0014 28.2 7.8 34 175-211 77-110 (349)
414 PRK12779 putative bifunctional 55.8 21 0.00046 35.9 5.1 52 70-121 306-375 (944)
415 PRK07392 threonine-phosphate d 55.6 64 0.0014 28.0 7.8 82 72-156 76-162 (360)
416 TIGR03877 thermo_KaiC_1 KaiC d 55.6 42 0.00091 27.5 6.2 55 64-118 16-74 (237)
417 PTZ00377 alanine aminotransfer 55.5 1.4E+02 0.003 27.3 10.2 54 71-124 139-192 (481)
418 PRK07576 short chain dehydroge 55.4 1.1E+02 0.0024 25.1 8.8 54 70-123 10-64 (264)
419 PRK03692 putative UDP-N-acetyl 55.3 1.1E+02 0.0024 25.6 8.6 93 83-187 70-169 (243)
420 TIGR01829 AcAcCoA_reduct aceto 55.3 80 0.0017 25.1 7.8 53 71-123 2-56 (242)
421 PRK12742 oxidoreductase; Provi 55.2 1.1E+02 0.0023 24.4 8.8 53 70-124 7-60 (237)
422 TIGR01264 tyr_amTase_E tyrosin 55.2 1.5E+02 0.0032 26.1 10.7 107 45-155 73-181 (401)
423 COG1433 Uncharacterized conser 55.0 85 0.0018 23.3 7.4 52 81-135 53-104 (121)
424 PRK07063 short chain dehydroge 54.9 1.1E+02 0.0025 24.7 9.5 71 71-141 9-83 (260)
425 cd08255 2-desacetyl-2-hydroxye 54.9 1E+02 0.0022 25.3 8.6 51 62-116 91-142 (277)
426 PRK06202 hypothetical protein; 54.9 19 0.00042 29.3 4.1 37 176-212 62-98 (232)
427 cd08265 Zn_ADH3 Alcohol dehydr 54.8 87 0.0019 27.5 8.5 55 64-121 199-253 (384)
428 PRK02255 putrescine carbamoylt 54.8 86 0.0019 27.6 8.3 53 71-123 156-214 (338)
429 PRK12859 3-ketoacyl-(acyl-carr 54.6 97 0.0021 25.3 8.3 72 70-141 7-93 (256)
430 cd01137 PsaA Metal binding pro 54.6 61 0.0013 27.6 7.2 55 84-142 186-248 (287)
431 smart00822 PKS_KR This enzymat 54.6 85 0.0018 23.1 8.4 54 71-124 2-60 (180)
432 PRK09423 gldA glycerol dehydro 54.6 88 0.0019 27.6 8.5 10 179-188 87-96 (366)
433 cd08170 GlyDH Glycerol dehydro 54.5 62 0.0013 28.3 7.4 33 175-210 77-109 (351)
434 cd08241 QOR1 Quinone oxidoredu 54.4 1.2E+02 0.0026 24.9 10.6 57 63-122 134-190 (323)
435 PF02254 TrkA_N: TrkA-N domain 54.2 75 0.0016 22.4 12.3 32 176-207 63-94 (116)
436 cd08191 HHD 6-hydroxyhexanoate 54.2 1.4E+02 0.0031 26.4 9.8 14 175-189 79-92 (386)
437 PRK10624 L-1,2-propanediol oxi 54.2 1E+02 0.0022 27.3 8.9 20 167-189 81-100 (382)
438 PRK07201 short chain dehydroge 54.1 88 0.0019 29.6 8.9 72 70-141 372-445 (657)
439 PRK08642 fabG 3-ketoacyl-(acyl 54.0 1.1E+02 0.0025 24.5 8.9 32 71-102 7-38 (253)
440 PF02826 2-Hacid_dh_C: D-isome 53.8 1E+02 0.0023 24.0 12.0 121 71-216 37-159 (178)
441 PRK13376 pyrB bifunctional asp 53.7 68 0.0015 30.1 7.7 45 79-123 186-233 (525)
442 PRK09206 pyruvate kinase; Prov 53.5 1.9E+02 0.0041 26.8 12.7 124 83-212 261-403 (470)
443 PRK05447 1-deoxy-D-xylulose 5- 53.4 1.7E+02 0.0037 26.3 12.7 110 71-198 3-114 (385)
444 COG0436 Aspartate/tyrosine/aro 53.3 1.7E+02 0.0036 26.2 11.2 110 45-156 65-177 (393)
445 PRK06057 short chain dehydroge 53.3 1.2E+02 0.0026 24.5 10.0 65 70-138 8-73 (255)
446 PRK08416 7-alpha-hydroxysteroi 53.3 1.2E+02 0.0027 24.7 9.8 72 70-141 9-84 (260)
447 PRK01688 histidinol-phosphate 53.1 1.4E+02 0.0031 25.8 9.5 52 72-124 76-128 (351)
448 PRK12775 putative trifunctiona 53.1 1.2E+02 0.0026 30.8 10.0 98 70-186 430-528 (1006)
449 PTZ00433 tyrosine aminotransfe 53.0 83 0.0018 28.0 8.2 84 71-155 105-190 (412)
450 cd08185 Fe-ADH1 Iron-containin 53.0 1.5E+02 0.0033 26.2 9.8 89 95-189 4-96 (380)
451 PLN02253 xanthoxin dehydrogena 53.0 95 0.0021 25.6 8.1 31 71-101 20-50 (280)
452 PRK15407 lipopolysaccharide bi 52.8 1.5E+02 0.0032 26.9 9.8 54 71-124 79-140 (438)
453 PRK14804 ornithine carbamoyltr 52.8 82 0.0018 27.3 7.8 35 71-105 155-189 (311)
454 PRK12814 putative NADPH-depend 52.8 1E+02 0.0022 29.5 9.1 56 66-122 320-381 (652)
455 cd05289 MDR_like_2 alcohol deh 52.7 1.3E+02 0.0028 24.7 9.8 50 64-117 140-189 (309)
456 PRK12749 quinate/shikimate deh 52.7 89 0.0019 26.7 7.9 34 71-104 125-158 (288)
457 PRK09754 phenylpropionate diox 52.6 1.2E+02 0.0026 26.8 9.1 51 71-121 145-205 (396)
458 cd08177 MAR Maleylacetate redu 52.5 91 0.002 27.1 8.1 34 175-211 77-110 (337)
459 PF00702 Hydrolase: haloacid d 52.4 89 0.0019 24.3 7.5 71 52-131 131-208 (215)
460 PRK12778 putative bifunctional 52.3 62 0.0013 31.5 7.7 53 71-123 571-629 (752)
461 cd08283 FDH_like_1 Glutathione 52.3 1.2E+02 0.0025 26.7 8.9 57 62-121 178-235 (386)
462 cd06306 PBP1_TorT-like TorT-li 52.0 1.3E+02 0.0028 24.5 17.5 146 53-209 46-217 (268)
463 TIGR02095 glgA glycogen/starch 52.0 1.2E+02 0.0026 27.5 9.1 31 75-105 16-46 (473)
464 cd06320 PBP1_allose_binding Pe 51.9 1.3E+02 0.0028 24.5 17.8 149 55-212 48-219 (275)
465 PRK06108 aspartate aminotransf 51.9 1.6E+02 0.0035 25.5 11.3 76 45-124 61-137 (382)
466 cd08235 iditol_2_DH_like L-idi 51.6 1.5E+02 0.0033 25.1 11.2 57 62-121 159-215 (343)
467 PRK12748 3-ketoacyl-(acyl-carr 51.5 1.3E+02 0.0028 24.4 9.8 71 71-141 7-92 (256)
468 PF02737 3HCDH_N: 3-hydroxyacy 51.4 29 0.00064 27.3 4.5 31 73-103 2-32 (180)
469 PRK06247 pyruvate kinase; Prov 51.3 2E+02 0.0044 26.6 13.8 124 83-212 258-402 (476)
470 PF02558 ApbA: Ketopantoate re 51.1 62 0.0014 24.1 6.2 46 74-123 2-47 (151)
471 TIGR03801 asp_4_decarbox aspar 51.1 2.1E+02 0.0045 26.8 10.6 53 72-124 157-215 (521)
472 PRK07023 short chain dehydroge 51.0 1.1E+02 0.0023 24.6 8.0 49 71-123 3-51 (243)
473 COG0026 PurK Phosphoribosylami 51.0 29 0.00063 30.9 4.7 32 72-103 3-34 (375)
474 PRK08339 short chain dehydroge 50.5 1.2E+02 0.0026 25.0 8.3 32 70-101 9-40 (263)
475 PRK12747 short chain dehydroge 50.4 1E+02 0.0023 24.9 7.8 54 70-123 5-60 (252)
476 TIGR03845 sulfopyru_alph sulfo 50.3 1.2E+02 0.0025 23.4 10.2 75 72-147 61-149 (157)
477 PRK05957 aspartate aminotransf 50.3 1.8E+02 0.0039 25.6 11.3 84 71-155 90-173 (389)
478 PF13380 CoA_binding_2: CoA bi 50.2 65 0.0014 23.4 5.8 49 72-120 58-106 (116)
479 PRK05370 argininosuccinate syn 50.0 2.1E+02 0.0045 26.3 13.9 134 68-208 10-156 (447)
480 PRK02102 ornithine carbamoyltr 50.0 1.2E+02 0.0027 26.5 8.5 53 71-123 156-216 (331)
481 PRK08153 histidinol-phosphate 50.0 1.8E+02 0.0038 25.4 9.8 83 72-155 86-168 (369)
482 PRK08267 short chain dehydroge 49.9 1.2E+02 0.0025 24.7 8.1 32 71-102 3-34 (260)
483 PRK07577 short chain dehydroge 49.9 1.3E+02 0.0028 23.8 9.5 61 71-140 5-65 (234)
484 PRK08159 enoyl-(acyl carrier p 49.8 1.4E+02 0.003 24.8 8.6 93 85-184 1-97 (272)
485 PF01494 FAD_binding_3: FAD bi 49.7 25 0.00055 29.7 4.2 31 72-102 3-33 (356)
486 PRK12770 putative glutamate sy 49.7 78 0.0017 27.5 7.3 53 71-123 173-231 (352)
487 cd01011 nicotinamidase Nicotin 49.6 1.3E+02 0.0028 23.8 8.3 62 55-120 128-196 (196)
488 PRK14805 ornithine carbamoyltr 49.6 63 0.0014 27.9 6.6 49 75-123 153-207 (302)
489 PRK07683 aminotransferase A; V 49.6 1.8E+02 0.0039 25.5 11.1 77 45-124 65-142 (387)
490 cd08176 LPO Lactadehyde:propan 49.6 1.3E+02 0.0029 26.6 8.8 89 94-189 5-98 (377)
491 PRK06849 hypothetical protein; 49.6 1.8E+02 0.004 25.6 9.8 32 71-102 6-37 (389)
492 PRK04284 ornithine carbamoyltr 49.4 1.8E+02 0.0039 25.5 9.9 45 79-123 166-216 (332)
493 PF06745 KaiC: KaiC; InterPro 49.4 35 0.00077 27.5 4.8 55 64-118 14-73 (226)
494 COG0169 AroE Shikimate 5-dehyd 49.1 63 0.0014 27.7 6.4 75 29-104 85-160 (283)
495 COG1419 FlhF Flagellar GTP-bin 49.0 97 0.0021 28.0 7.7 126 43-182 210-346 (407)
496 PLN02527 aspartate carbamoyltr 48.9 1.8E+02 0.0038 25.2 10.1 45 79-123 163-210 (306)
497 PRK13984 putative oxidoreducta 48.8 74 0.0016 30.0 7.4 51 71-121 284-352 (604)
498 PRK12746 short chain dehydroge 48.8 1.4E+02 0.0031 24.0 9.2 53 71-123 8-62 (254)
499 PF13478 XdhC_C: XdhC Rossmann 48.8 29 0.00063 26.2 3.9 32 73-104 1-32 (136)
500 PRK09275 aspartate aminotransf 48.8 2.3E+02 0.005 26.6 10.5 113 44-156 133-255 (527)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-56 Score=374.43 Aligned_cols=214 Identities=57% Similarity=0.943 Sum_probs=202.2
Q ss_pred hHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHH
Q 027338 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 88 (224)
++.+.+.+++|||+++.++....+++||+|+|++||+||.|||.|.+|+.+|+++|.|.|| .+||++||||+|.+||+.
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~v 80 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMV 80 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHH
Confidence 4567889999999999999988889999999999999999999999999999999999999 789999999999999999
Q ss_pred HHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHH
Q 027338 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
|+.+|+++++|||++++++|+++|++|||+|+.++...+ +..+.+++++++++.|+ .++++||+||.||.+|+.|+|+
T Consensus 81 aa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~ 160 (300)
T COG0031 81 AAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGP 160 (300)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHH
Confidence 999999999999999999999999999999999998444 88899999999999888 7788899999999999999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCCCCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGIE 224 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
||++|+++.+|++|+++|||||++|++++||+.+|++++|+|||++|+.+.+|. ++|
T Consensus 161 EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~ 217 (300)
T COG0031 161 EIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPH 217 (300)
T ss_pred HHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCc
Confidence 999999888999999999999999999999999999999999999999888765 554
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.1e-55 Score=390.64 Aligned_cols=219 Identities=74% Similarity=1.235 Sum_probs=204.3
Q ss_pred cchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHH
Q 027338 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~al 85 (224)
+++++++.+.+++|||++++.++...+++||+|+|++|||||||||+|.+++.+++++|.+.||+++||++|+||||.|+
T Consensus 111 ~~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~AL 190 (429)
T PLN03013 111 LNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGL 190 (429)
T ss_pred HHHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHH
Confidence 45788999999999999999998777789999999999999999999999999999999999997789999999999999
Q ss_pred HHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 027338 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (224)
Q Consensus 86 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (224)
|++|+.+|++++||||+.+++.|+++|+.|||+|+.+++..++.++++.+++++++.+++||++||+||.|+..||.|+|
T Consensus 191 A~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg 270 (429)
T PLN03013 191 AFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTG 270 (429)
T ss_pred HHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999765567888999999888778999999999999778999999
Q ss_pred HHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCCCCC
Q 027338 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGIE 224 (224)
Q Consensus 166 ~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
+||++|+++++|+||+|+||||+++|+++++|+.+|+++||+|||++++.+.++.+.+|
T Consensus 271 ~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~ 329 (429)
T PLN03013 271 PEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPH 329 (429)
T ss_pred HHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCc
Confidence 99999997789999999999999999999999999999999999999998877655543
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=2e-55 Score=380.67 Aligned_cols=218 Identities=89% Similarity=1.357 Sum_probs=201.2
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++.++..+++|||++++.++...+.+||+|+|++|||||||||+|++++..+.++|.+.+|.++||++|+||||.|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 45678999999999999988766556799999999999999999999999999999998888877899999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|+||||+++++.|+++++.|||+|+.+++..++.++.+.+++++++.++.||++||+|+.|+..||.|+|+
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997555678888999998876688999999999998899999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCCCCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGIE 224 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
||++|+++++|+||+|+||||+++|++.++|+.+|+++||+|||++|+++.++.+.+|
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~ 221 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPH 221 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCc
Confidence 9999997679999999999999999999999999999999999999999877655543
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=3e-54 Score=378.64 Aligned_cols=222 Identities=62% Similarity=1.053 Sum_probs=203.9
Q ss_pred ccccchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHH
Q 027338 3 VESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g 82 (224)
|+.+++.++++..+++|||++++.++...|++||+|+|++||+||||||++.+++.++.++|.+.||.++||++|+||||
T Consensus 44 ~~~~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G 123 (368)
T PLN02556 44 LPGTKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMG 123 (368)
T ss_pred CCcchhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHH
Confidence 34455678899999999999999998777899999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHH
Q 027338 83 IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++|++|||..++..|+++|+.|||+|+.+++..+....++.+++++++.+++||++||+||.++..||.
T Consensus 124 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ 203 (368)
T PLN02556 124 ISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFE 203 (368)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998654455778888888888778999999999999667999
Q ss_pred hHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCCCCC
Q 027338 163 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGIE 224 (224)
Q Consensus 163 t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
++|+||++|+.+.+|+||+|+|||||++|+++++|+.+|+++||+|||++++.+.++...+|
T Consensus 204 ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~ 265 (368)
T PLN02556 204 TTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPH 265 (368)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCe
Confidence 99999999986689999999999999999999999999999999999999988877765543
No 5
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=4.9e-54 Score=368.35 Aligned_cols=210 Identities=48% Similarity=0.767 Sum_probs=196.3
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
|+++++...+++|||++++.|+...|.+||+|+|++|||||||+|++.+++.++.++|.+.++ ++||++|+||||+|+|
T Consensus 1 ~~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA 79 (296)
T PRK11761 1 MAYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALA 79 (296)
T ss_pred CccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHH
Confidence 456889999999999999999887788999999999999999999999999999999988887 7799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|+||||+++++.|++.++.|||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.|+++
T Consensus 80 ~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~ 158 (296)
T PRK11761 80 MIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGP 158 (296)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHH
Confidence 99999999999999999999999999999999999996556788888899988775 78999999999998889999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
||++|++.++|+||+|+||||+++|++++||+++|+++||+|||++++.+.|
T Consensus 159 Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g 210 (296)
T PRK11761 159 EIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG 210 (296)
T ss_pred HHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC
Confidence 9999997679999999999999999999999999999999999999888864
No 6
>PLN00011 cysteine synthase
Probab=100.00 E-value=6.4e-53 Score=365.57 Aligned_cols=215 Identities=73% Similarity=1.169 Sum_probs=197.5
Q ss_pred hhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHH
Q 027338 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 87 (224)
.++++...+++|||+++++++...+.+||+|+|++|||||||+|++.+++.+++++|.+.|+.++||++|+||||+|+|+
T Consensus 7 ~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~ 86 (323)
T PLN00011 7 IKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLAC 86 (323)
T ss_pred HHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Confidence 45678889999999999998876668999999999999999999999999999999999998778999999999999999
Q ss_pred HHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 027338 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 88 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 167 (224)
+|+.+|++|++|||.++++.|+++++.+||+|+.++...+..+..+++++++++.+++||++||+|+.++..||.++++|
T Consensus 87 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~E 166 (323)
T PLN00011 87 IGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPE 166 (323)
T ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975445566778888888766789999999999988899999999
Q ss_pred HHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCCC
Q 027338 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~~ 222 (224)
|++|+.+++|+||+|+|||||++|++.++|+.+|+++||+|||++++++.++.+.
T Consensus 167 I~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~ 221 (323)
T PLN00011 167 IWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPG 221 (323)
T ss_pred HHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCC
Confidence 9999966899999999999999999999999999999999999999988766543
No 7
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.5e-52 Score=360.01 Aligned_cols=209 Identities=65% Similarity=1.066 Sum_probs=194.4
Q ss_pred hcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHC
Q 027338 13 TELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK 92 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~ 92 (224)
.+.+++|||++++.|+...+.+||+|+|++|||||||+|++.+++..+.++|.+.++ ++|+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 567899999999999988888999999999999999999999999999999988777 6799999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhh
Q 027338 93 QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 172 (224)
Q Consensus 93 G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~ 172 (224)
|++|+||||+++++.|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.+++.||.++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997555788889999998876578899999999988899999999999999
Q ss_pred CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCCC
Q 027338 173 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222 (224)
Q Consensus 173 ~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~~ 222 (224)
+.++|+||+|+|+||+++|++.+|++.+|.++||+|||++++++.++.++
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~ 210 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPG 210 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCC
Confidence 76799999999999999999999999999999999999999998865433
No 8
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.5e-52 Score=356.95 Aligned_cols=205 Identities=48% Similarity=0.797 Sum_probs=191.1
Q ss_pred hhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHH
Q 027338 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 91 (224)
+...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|++.++ ++||++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 4567999999999999888888999999999999999999999999999999998887 689999999999999999999
Q ss_pred CCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhh
Q 027338 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (224)
Q Consensus 92 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 171 (224)
+|++|++|||+++++.|+++++.+||+|+.++...+++++.+.+++++++. +.+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999997555788888999998886 4468999999999778899999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 172 ~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
++.++|+||+|+||||+++|++.++|+.+|+++||+|||++++.+.+
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g 206 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG 206 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC
Confidence 97679999999999999999999999999999999999999988765
No 9
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=6.8e-52 Score=355.71 Aligned_cols=207 Identities=65% Similarity=1.067 Sum_probs=189.3
Q ss_pred hcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHC
Q 027338 13 TELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK 92 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~ 92 (224)
...+++|||+++++ ....|.+||+|+|++|||||||+|++.+++..+.++|.+.+| ++||++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 56789999999998 455678999999999999999999999999999999988777 6799999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHHHHHhh
Q 027338 93 QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKG 171 (224)
Q Consensus 93 G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 171 (224)
|++|+||||+++++.|++.++.+||+|+.+++..++.++.+.+++++++.++ +++++||+|+.+++.||.++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456778888998887644 559999999998889999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCC
Q 027338 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP 221 (224)
Q Consensus 172 ~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~ 221 (224)
++..||+||+|+|+||+++|++.+|++.+|+++||+|||++++++.++.+
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~ 209 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKP 209 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCC
Confidence 96579999999999999999999999999999999999999988876543
No 10
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-52 Score=359.43 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=191.7
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..+.++...+.+|||++++.|++..|.+||+|+|++||+||||.|+|++.+..+.+++.. ..+||++|+||||+++|
T Consensus 14 ~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGvA 90 (347)
T COG1171 14 AAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGVA 90 (347)
T ss_pred HHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHHH
Confidence 466889999999999999999999999999999999999999999999999987644322 36799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
|+|+++|++++||||.+++..|++.++.|||||++++ .+++++...+++++++. |+.|+++|++|.. ++||+|+++
T Consensus 91 ~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g--~~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~l 166 (347)
T COG1171 91 YAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIAL 166 (347)
T ss_pred HHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEEC--CCHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHH
Confidence 9999999999999999999999999999999999999 56899999999999987 9999999999998 999999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
||++|++..+|+||||+|+||+++|++.++|...|+++||||||+++++|..
T Consensus 167 Eileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~ 218 (347)
T COG1171 167 EILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYA 218 (347)
T ss_pred HHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHH
Confidence 9999996557999999999999999999999999999999999999998864
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1e-50 Score=352.90 Aligned_cols=209 Identities=47% Similarity=0.784 Sum_probs=187.1
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..+++++..+++|||++++++++..|.+||+|+|++||+||||+|++.+++.+++++|++.++ .+||++|+||||+|+|
T Consensus 2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA 80 (330)
T PRK10717 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLA 80 (330)
T ss_pred chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHH
Confidence 357889999999999999999988889999999999999999999999999999999988887 6799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCC------ChHHHHHHHHHHHHhC-CCeEEcCCCCCCccHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK------GMKGAVQKAEEILAKT-PNAYMLQQFENPANPKI 159 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~ 159 (224)
++|+++|++|+||||..+++.|+++++.+||+|+.++... ..+.+.+.++++.++. .++||++||+||.++..
T Consensus 81 ~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (330)
T PRK10717 81 LVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREA 160 (330)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHH
Confidence 9999999999999999999999999999999999999631 1222344455554443 37899999999998778
Q ss_pred HHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 160 HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 160 g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||.++++||++|++.++|+||+|+|+||+++|++.+|++..|+++||+|||++++ ++
T Consensus 161 g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~-~~ 217 (330)
T PRK10717 161 HYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSA-LY 217 (330)
T ss_pred HHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCc-cc
Confidence 9999999999999767999999999999999999999999999999999999984 44
No 12
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-51 Score=346.71 Aligned_cols=217 Identities=69% Similarity=1.102 Sum_probs=207.3
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
.+.+.+.+.+|+|||+++++....+.++|++|+|.+||+||.|||.++.|+.+|+++|.+.||+.+|++++|||+|.+||
T Consensus 41 ~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA 120 (362)
T KOG1252|consen 41 LILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLA 120 (362)
T ss_pred hhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHH
Confidence 35677899999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHH---HHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
++|+..|++|+++||++.+.+|+..|+++||+|+.++....+.. +...+.++..+.|+.|.++||.||.|+..||.+
T Consensus 121 ~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~t 200 (362)
T KOG1252|consen 121 YMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYET 200 (362)
T ss_pred HHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccccc
Confidence 99999999999999999999999999999999999997655555 888999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCCCCCC
Q 027338 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGI 223 (224)
Q Consensus 164 ~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~~~~~ 223 (224)
++.||++|+.+.+|.+|.++|||||++|+.+++|+.+|+++|++|||.+|..+.++.+++
T Consensus 201 tg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 201 TGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred ccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 999999999889999999999999999999999999999999999999999999888877
No 13
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2.5e-50 Score=356.40 Aligned_cols=213 Identities=37% Similarity=0.623 Sum_probs=185.7
Q ss_pred CccccchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcH
Q 027338 2 AVESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNT 81 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~ 81 (224)
||+.-+....+.+.+++|||++++.++...|.+||+|+|++|||||||||++.+++.++.++|.+.++ .+|+++|+|||
T Consensus 37 ~~~~~~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~ 115 (423)
T PLN02356 37 PLSKKKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGST 115 (423)
T ss_pred cccccchhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHH
Confidence 45556677789999999999999999888889999999999999999999999999999999988776 57888999999
Q ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC-----CCh-HHHH---HHHHHHHHh-----------
Q 027338 82 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-----KGM-KGAV---QKAEEILAK----------- 141 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-----~~~-~~~~---~~a~~~~~~----------- 141 (224)
|.|+|++|+.+|++|+||||.++++.|++.++.|||+|+.+++. .++ ..+. ..+++++++
T Consensus 116 g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~ 195 (423)
T PLN02356 116 AISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIH 195 (423)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 99999999999999999999999999999999999999999641 122 1111 234444433
Q ss_pred ---------------------CCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcC
Q 027338 142 ---------------------TPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 200 (224)
Q Consensus 142 ---------------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~ 200 (224)
.++.||++||+|+.|+..|+..+|+||++|+++++|+||+|+||||+++|+++++|+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~ 275 (423)
T PLN02356 196 LEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKN 275 (423)
T ss_pred ccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhC
Confidence 14789999999999987876667999999997689999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCC
Q 027338 201 PNIKLYGIEPTESPV 215 (224)
Q Consensus 201 ~~~~vigve~~~~~~ 215 (224)
|+++||+|||.+|+.
T Consensus 276 P~vkVigVep~~s~~ 290 (423)
T PLN02356 276 PNIKCFLIDPPGSGL 290 (423)
T ss_pred CCCEEEEEecCCCcc
Confidence 999999999999863
No 14
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=7.3e-50 Score=342.08 Aligned_cols=202 Identities=61% Similarity=1.008 Sum_probs=185.0
Q ss_pred CCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeE
Q 027338 17 GNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRL 96 (224)
Q Consensus 17 ~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~ 96 (224)
++|||++++.++...|.+||+|+|++|||||||+|++.+++..+.++|++.++ .+||++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999988889999999999999999999999999999999987666 67999999999999999999999999
Q ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCC
Q 027338 97 IITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 174 (224)
Q Consensus 97 ~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~ 174 (224)
++|||.+.++.|+++++.+||+|+.++... +.+++.+.+++++++.+++||++||+||.++..|+.|+++||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999643 347888889998887668999999999999554556999999999966
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCCC
Q 027338 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG 219 (224)
Q Consensus 175 ~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~~ 219 (224)
.||+||+|+|+||+++|++.+|+++.|+++||+|||++++++.+.
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~ 204 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGG 204 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCC
Confidence 799999999999999999999999999999999999999888433
No 15
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-50 Score=359.99 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=188.6
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++.+.+++|||+++++|++..|++||+|+|++|||||||+|+|.+.+..+.+++. .++||++|+||||+++|
T Consensus 9 ~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~avA 84 (403)
T PRK08526 9 QAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGVA 84 (403)
T ss_pred HHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHHH
Confidence 46678999999999999999998888999999999999999999999999998876654 36799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+++|++|+||||.+++..|++.++.|||+|+.++. +++++...+++++++. +++|++||+|+.+ +.|++|+|+
T Consensus 85 ~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~ 160 (403)
T PRK08526 85 ISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIAL 160 (403)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHH
Confidence 99999999999999999999999999999999999984 6899999999998875 7899999999987 899999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||++|+ +++|+||+|+|+||+++|++.++|..+|+++||||||++++++.
T Consensus 161 EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~ 210 (403)
T PRK08526 161 EMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMY 210 (403)
T ss_pred HHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHH
Confidence 999999 47999999999999999999999999999999999999999873
No 16
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-50 Score=351.10 Aligned_cols=202 Identities=21% Similarity=0.309 Sum_probs=188.0
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+|+|
T Consensus 8 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~alA 83 (322)
T PRK07476 8 RARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRALA 83 (322)
T ss_pred HHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHHH
Confidence 46789999999999999999998888999999999999999999999999999998886 24599999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|++|||+++++.|++.|+.|||+|+.++. +++++.+.++++.++. +++|++||+||.+ +.|++|+++
T Consensus 84 ~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~ 159 (322)
T PRK07476 84 YAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGL 159 (322)
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHH
Confidence 99999999999999999999999999999999999994 4788888899888876 7799999999998 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||++|++ ++|+||+|+|+||+++|++.+||..+|+++||+|||++++++.
T Consensus 160 Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~ 209 (322)
T PRK07476 160 EILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMH 209 (322)
T ss_pred HHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 9999994 7999999999999999999999999999999999999887654
No 17
>PLN02970 serine racemase
Probab=100.00 E-value=2.7e-50 Score=349.82 Aligned_cols=201 Identities=18% Similarity=0.227 Sum_probs=185.9
Q ss_pred hhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHH
Q 027338 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 87 (224)
.++++...+++|||++++++++..|.+||+|+|++|||||||||++.+++..+.+++. .++||++|+||||.|+|+
T Consensus 17 a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 92 (328)
T PLN02970 17 ARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALAL 92 (328)
T ss_pred HHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHH
Confidence 4567889999999999999988778899999999999999999999999999876554 367999999999999999
Q ss_pred HHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 027338 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 88 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 167 (224)
+|+.+|++|+||||.++++.|++.|+.|||+|+.++. +++++.+.+++++++ +++||++||+|+.+ ..|++|+|+|
T Consensus 93 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~-~g~~~~~~~~n~~~-~~g~~t~g~E 168 (328)
T PLN02970 93 AAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQE-TGAVLIHPYNDGRV-ISGQGTIALE 168 (328)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHh-cCCEEeCCCCCcch-hhehHHHHHH
Confidence 9999999999999999999999999999999999995 577888889998877 58999999999987 6899999999
Q ss_pred HHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
|++|++ .||+||+|+|+||+++|++++||+.+|+++||+|||++++++.
T Consensus 169 i~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~ 217 (328)
T PLN02970 169 FLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAA 217 (328)
T ss_pred HHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHH
Confidence 999995 6999999999999999999999999999999999999998764
No 18
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=2.5e-50 Score=359.24 Aligned_cols=202 Identities=25% Similarity=0.404 Sum_probs=188.9
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||+++++|++..|.+||+|+|++|||||||+|+|.+++.++.+++. .++||++|+||||+++|
T Consensus 11 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 86 (404)
T PRK08198 11 EARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVA 86 (404)
T ss_pred HHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHH
Confidence 36778999999999999999998888999999999999999999999999999886554 37899999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|+||||.+++..|+++++.|||+|+.++ .+++++...+++++++. ++||++||+|+.+ +.||+|+|+
T Consensus 87 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~--~~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~ 162 (404)
T PRK08198 87 YAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHG--DVYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGL 162 (404)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHH
Confidence 9999999999999999999999999999999999998 46889999999998875 8899999999988 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||++|+ +++|+||+|+||||+++|++.++|+.+|+++||||||++++++.
T Consensus 163 EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~ 212 (404)
T PRK08198 163 EILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMP 212 (404)
T ss_pred HHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHH
Confidence 999999 57999999999999999999999999999999999999998874
No 19
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=3e-50 Score=365.40 Aligned_cols=201 Identities=26% Similarity=0.389 Sum_probs=186.5
Q ss_pred HhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
.++...+.+|||++++.|++..|.+||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 36778999999999999999889999999999999999999999999988764432 25699999999999999999
Q ss_pred HHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 027338 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (224)
+.+|++|+||||.+++..|++.++.|||+|+.++ .+++++...+++++++. +++|++||+|+.+ +.|++|+|+||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g--~~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHG--ESFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 46899999999998876 7899999999998 889999999999
Q ss_pred hhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 170 ~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
+|++..+|+||+|+|+||+++|++.++|..+|+++||||||++++++..
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~ 229 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQA 229 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhH
Confidence 9996569999999999999999999999999999999999999988753
No 20
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=4.2e-50 Score=348.85 Aligned_cols=202 Identities=24% Similarity=0.352 Sum_probs=186.3
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||++++.|++..+.+||+|+|++|||||||||++.+++..+.++.. .++||++|+||||.|+|
T Consensus 16 ~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~alA 91 (333)
T PRK08638 16 EAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGVA 91 (333)
T ss_pred HHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHHH
Confidence 46788999999999999999988888899999999999999999999999998765433 25799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|+||||++.++.|+++++.|||+|+.++ .+++++.+.+++++++. ++||++||+||.+ ..|+.|+++
T Consensus 92 ~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~--~~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~ 167 (333)
T PRK08638 92 LSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHG--DNFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGL 167 (333)
T ss_pred HHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHH
Confidence 9999999999999999999999999999999999998 45788888999998876 7899999999988 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||++|+ +++|+||+|+|+||+++|++.+||+.+|+++||+|||+++++|+
T Consensus 168 Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~ 217 (333)
T PRK08638 168 EILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMA 217 (333)
T ss_pred HHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 999999 57999999999999999999999999999999999999987654
No 21
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=6.1e-50 Score=356.58 Aligned_cols=201 Identities=24% Similarity=0.318 Sum_probs=187.4
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++.+.+++|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.+.+. .++||++|+||||+|+|
T Consensus 14 ~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~A 89 (406)
T PRK06382 14 YAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGVA 89 (406)
T ss_pred HHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHHH
Confidence 36678999999999999999998888999999999999999999999999998876553 25699999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|+||||.+++..|++.++.|||+|+.+++ +++++...+++++++. +++|++||+|+.+ +.|++|+|+
T Consensus 90 ~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~ 165 (406)
T PRK06382 90 YAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGL 165 (406)
T ss_pred HHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999985 5788999999998875 8899999999988 889999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
||++|+ +++|+||+|+|+||+++|+++++|+.+|+++||||||++++++
T Consensus 166 Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~ 214 (406)
T PRK06382 166 EIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSM 214 (406)
T ss_pred HHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 999999 4799999999999999999999999999999999999999876
No 22
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2.2e-49 Score=342.59 Aligned_cols=202 Identities=21% Similarity=0.302 Sum_probs=185.9
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++.+.+++|||++++++++..|.+||+|+|++|||||||+|++.+++..+.++.. ..+||++|+||||.|+|
T Consensus 8 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 83 (317)
T TIGR02991 8 RAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALA 83 (317)
T ss_pred HHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHH
Confidence 46788999999999999999988788899999999999999999999999988764322 25799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|++|||.++++.|++.++.|||+|+.++. +++++...+++++++. ++||++||+||.+ +.|++|+++
T Consensus 84 ~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~ 159 (317)
T TIGR02991 84 YAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGL 159 (317)
T ss_pred HHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHH
Confidence 99999999999999999999999999999999999995 5788888888888775 8899999999998 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||++|+ +++|+||+|+|+||+++|+++++|+.+|+++||+|||++++++.
T Consensus 160 Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~ 209 (317)
T TIGR02991 160 EVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMK 209 (317)
T ss_pred HHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 999999 46899999999999999999999999999999999999888775
No 23
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=3.7e-49 Score=356.49 Aligned_cols=208 Identities=47% Similarity=0.787 Sum_probs=188.7
Q ss_pred hHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHH
Q 027338 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 88 (224)
++.+...+++|||+++++++...+.+||+|+|++|||||||+|+|.+++.++.++|.+.+| ++||++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 4567888999999999999988788999999999999999999999999999999998888 789999999999999999
Q ss_pred HHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 027338 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (224)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (224)
|+.+|++|++|||.++++.|++.++.|||+|+.++....++ .....+++++++.++.||++||+|+.++..||.++|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998642222 335667778777557789999999999888999999
Q ss_pred HHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 166 ~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
+||++|+++.+|+||+|+||||+++|++.++++.+|+++||+|||++++ +++
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-~~~ 212 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-LAQ 212 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-ccC
Confidence 9999999767999999999999999999999999999999999999986 443
No 24
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.1e-49 Score=350.38 Aligned_cols=198 Identities=23% Similarity=0.300 Sum_probs=179.6
Q ss_pred cCCCceeeccccccCCC--------ceEEEEeCCCCC-CCchhhhHHHHHHHH-----HHHcCCCCCCC-----------
Q 027338 16 IGNTPLVYLNNIVNGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------- 70 (224)
Q Consensus 16 ~~~TPl~~~~~l~~~~~--------~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 70 (224)
+++|||++++.++...| .+||+|+|++|| |||||||++.+++.. +.++|.+.||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999887654 799999999999 999999999999864 78889988874
Q ss_pred -----cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 027338 71 -----SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA 145 (224)
Q Consensus 71 -----~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (224)
++||++|+||||+|+|++|+.+|++|+||||.++++.|++.|+.|||+|+.++. +++++.+.+++++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 489999999999999999999999999999999999999999999999999984 6888999999998887678
Q ss_pred EEcCCCCCCccHHHHHHhHHHHHHhhhCC---C-----CCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEcCCCCCCc
Q 027338 146 YMLQQFENPANPKIHYETTGPELWKGSGG---R-----IDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVL 216 (224)
Q Consensus 146 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~-----~d~iv~pvGtGg~~aGi~~~~~~~-~~~~~vigve~~~~~~~ 216 (224)
||+++++++.. +.||+|+|+||++|++. + ||+||+|+|+||+++|++++||+. .|+++||+|||++++++
T Consensus 208 ~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 99999766554 89999999999999952 3 458999999999999999999997 78999999999999876
No 25
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.3e-49 Score=343.27 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=185.1
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||++++++++..|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+|+|
T Consensus 13 ~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 88 (321)
T PRK07048 13 AAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIA 88 (321)
T ss_pred HHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHH
Confidence 46788999999999999999987778899999999999999999999999998875443 26799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|++|||.++++.|+++++.|||+|+.++. +++++...+++++++. ++||++||+|+.+ +.|++|+++
T Consensus 89 ~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~ 164 (321)
T PRK07048 89 LSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAK 164 (321)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHH
Confidence 99999999999999999999999999999999999995 4677888888888875 7899999999988 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
||++|++ +||+||+|+||||+++|++.++|+.+|+++||+|||++++++
T Consensus 165 EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~ 213 (321)
T PRK07048 165 ELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDG 213 (321)
T ss_pred HHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhH
Confidence 9999994 799999999999999999999999999999999999998754
No 26
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-49 Score=342.99 Aligned_cols=202 Identities=23% Similarity=0.291 Sum_probs=185.3
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||++++.|++..|.+||+|+|++||+||||+|++.+++.++.+++... .+||++|+||||+|+|
T Consensus 10 ~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~alA 86 (322)
T PRK06110 10 AAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSVA 86 (322)
T ss_pred HHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHHH
Confidence 3567889999999999999999888889999999999999999999999999998876533 4599999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+++|++|+||||.++++.|+++++.|||+|+.++ .+++++...+++++++. ++||+++| |+.+ ..||.|+++
T Consensus 87 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~ 161 (322)
T PRK06110 87 FAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHG--EDFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYAL 161 (322)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHH
Confidence 9999999999999999999999999999999999997 45788888999988875 78999998 5665 689999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||++|++ ++|+||+|+|+||+++|++.++++.+|+++||+|||++++++.
T Consensus 162 Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~ 211 (322)
T PRK06110 162 ELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYA 211 (322)
T ss_pred HHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHH
Confidence 9999995 7999999999999999999999999999999999999998764
No 27
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2.7e-49 Score=361.53 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=184.3
Q ss_pred hhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 90 (224)
++...+.+|||++++.|++..|++||+|+|++|||||||+|+|.+.+..+.++.. .++||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 4558899999999999999899999999999999999999999999998854432 256999999999999999999
Q ss_pred HCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 027338 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (224)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (224)
++|++|+||||.+++..|++.++.|||+|+.++ .+++++...+++++++. +++|++||+||.+ +.|++|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g--~~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVG--DSYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 45889999999998875 7899999999998 8999999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 171 q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
|++..+|+||+|+|+||+++|++.++|+.+|++|||||||++++++.
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~ 300 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 99656999999999999999999999999999999999999998885
No 28
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=4.2e-49 Score=348.86 Aligned_cols=190 Identities=23% Similarity=0.377 Sum_probs=179.4
Q ss_pred CceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEE
Q 027338 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 98 (224)
Q Consensus 19 TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~i 98 (224)
|||++++.|+...|.+||+|+|++|||||||+|+|.+++.++.++++ .++||++|+||||+++|++|+++|++|++
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999998888999999999999999999999999999998886 25799999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCE
Q 027338 99 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA 178 (224)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~ 178 (224)
|||.+++..|++.++.|||+|++++. +++++...+++++++. +++|++||+|+.+ +.|++|+++||++|+ +++|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCE
Confidence 99999999999999999999999984 5889999999998875 8899999999988 799999999999999 47999
Q ss_pred EEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 179 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 179 iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||+|+||||+++|++.++|+.+|+++||||||++++++.
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~ 190 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMY 190 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999999999999999999999999999999999998864
No 29
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=3.6e-49 Score=352.88 Aligned_cols=205 Identities=24% Similarity=0.363 Sum_probs=184.3
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++.+.+++|||++++.+++..|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|
T Consensus 14 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~alA 89 (420)
T PRK08639 14 KAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGVA 89 (420)
T ss_pred HHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHH
Confidence 46678999999999999999998888999999999999999999999999988543222 26799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD-PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (224)
++|+++|++|+||||.+++..|++.++.|||+|+.+. ...+++++.+.+.+++++. +++|++||+|+.+ +.|++|+|
T Consensus 90 ~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig 167 (420)
T PRK08639 90 YACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVA 167 (420)
T ss_pred HHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHH
Confidence 9999999999999999999999999999999744332 1246889999999998875 7999999999988 78999999
Q ss_pred HHHHhhhCCC--CCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 166 PELWKGSGGR--IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 166 ~Ei~~q~~~~--~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
+||++|++.. +|+||+|+|+||+++|++.++|+.+|+++||||||++++++.
T Consensus 168 ~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~ 221 (420)
T PRK08639 168 VEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMK 221 (420)
T ss_pred HHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHH
Confidence 9999999655 999999999999999999999999999999999999998874
No 30
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=7.1e-49 Score=341.78 Aligned_cols=201 Identities=20% Similarity=0.234 Sum_probs=184.7
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||+++++|++..|.+||+|+|++||+||||+|++.+++.++.++|++. ++||++|+||||+|+|
T Consensus 12 ~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA 88 (338)
T PRK06608 12 AAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVA 88 (338)
T ss_pred HHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHH
Confidence 3667889999999999999999888899999999999999999999999999999998743 5799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+++|++|++|||.+.++.|+++++.+||+|+.++. .+++.+++++ +++ +++||++||+|+.+ +.|++++++
T Consensus 89 ~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~ 162 (338)
T PRK06608 89 YASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCY 162 (338)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHH
Confidence 99999999999999999999999999999999999974 3566677777 444 58999999999988 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
||++|++.++|+||+|+|+||+++|++.+++..+++++||+|||++++++
T Consensus 163 Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~ 212 (338)
T PRK06608 163 EALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDA 212 (338)
T ss_pred HHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHH
Confidence 99999976899999999999999999999999999999999999999765
No 31
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=6.6e-49 Score=349.85 Aligned_cols=203 Identities=23% Similarity=0.364 Sum_probs=184.4
Q ss_pred hhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHH
Q 027338 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 87 (224)
.++++...+++|||++++.|++..|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|+
T Consensus 6 a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 6 ARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHH
Confidence 5678999999999999999998888999999999999999999999999987543322 257999999999999999
Q ss_pred HHHHCCCeEEEEECCCCCHHHHHHHHHcCCE---EEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 027338 88 MAAAKQYRLIITMPASMSLERRIILRAFGAE---LVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (224)
Q Consensus 88 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~---V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (224)
+|+++|++|+||||.+++..|++.++.|||+ |+.++ .+++++.+.+++++++. +++|++||+||.+ +.|++|+
T Consensus 82 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ti 157 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGTV 157 (409)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHHH
Confidence 9999999999999999999999999999997 44454 46889999999998875 7899999999988 7899999
Q ss_pred HHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 165 ~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
|+||++|++..||+||+|+|+||+++|++.++|+.+|+++||||||++++++..
T Consensus 158 ~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~ 211 (409)
T TIGR02079 158 AAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKA 211 (409)
T ss_pred HHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHH
Confidence 999999996569999999999999999999999999999999999999998863
No 32
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=7.1e-49 Score=356.21 Aligned_cols=201 Identities=27% Similarity=0.384 Sum_probs=186.3
Q ss_pred HhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
.++.+.+.+|||+++++|+...|.+||+|+|++||+||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 47788999999999999998888999999999999999999999999988744432 26799999999999999999
Q ss_pred HHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 027338 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (224)
+++|++|+||||.+++..|++.++.+||+|+.++ .+++++...+++++++. +++|++||+||.+ +.|++|+|.||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g--~~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHG--ANFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeC--cCHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHH
Confidence 9999999999999999999999999999999998 45889999999998885 7899999999998 899999999999
Q ss_pred hhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 170 ~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
+|++.++|+||+|+||||+++|++.++|+.+|+++||||||++++++.+
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~ 209 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQ 209 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 9996579999999999999999999999999999999999999988754
No 33
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=4.5e-49 Score=340.50 Aligned_cols=197 Identities=21% Similarity=0.277 Sum_probs=179.4
Q ss_pred CCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEE
Q 027338 18 NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLI 97 (224)
Q Consensus 18 ~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ 97 (224)
+|||++++++++..|.+||+|+|++||+||||+|++.+++.++.++|. .++ ++||++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999988778899999999999999999999999999999885 233 789999999999999999999999999
Q ss_pred EEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCC--C
Q 027338 98 ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--R 175 (224)
Q Consensus 98 ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--~ 175 (224)
+|||.++++.|++.|+.|||+|+.+++. .++++.+.+++++++.+++||++||+||.+ ..||.|+++||++|++. .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999863 256667777788776558899999999998 78889999999999965 5
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEcCCCCCCcCC
Q 027338 176 IDALVSGIGTGGTITGAGKFLKEKN-PNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 176 ~d~iv~pvGtGg~~aGi~~~~~~~~-~~~~vigve~~~~~~~~~ 218 (224)
||+||+|+|+||+++|++++|++.+ |+++||+|||++|+++.+
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~ 200 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNA 200 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHH
Confidence 9999999999999999999999996 999999999999987754
No 34
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=5.4e-49 Score=350.30 Aligned_cols=203 Identities=23% Similarity=0.294 Sum_probs=187.3
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||++++.++...|.+||+|+|++|||||||||++.+++.++.++.. .++||++|+||||+|+|
T Consensus 12 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 87 (403)
T PRK07334 12 AAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVA 87 (403)
T ss_pred HHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHH
Confidence 35678999999999999999988888899999999999999999999999998765432 25699999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+++|++|+||||..+++.|+++++.|||+|+.++. +++++.+.+++++++. ++||++||+|+.+ ..||.|+|+
T Consensus 88 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~ 163 (403)
T PRK07334 88 YHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVAL 163 (403)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHH
Confidence 99999999999999999999999999999999999984 5888999999998875 8899999999998 799999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
||++|+ +++|+||+|+|+||+++|++.++|+.+|+++||+|||++++++++
T Consensus 164 Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~ 214 (403)
T PRK07334 164 EMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYA 214 (403)
T ss_pred HHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHH
Confidence 999999 579999999999999999999999999999999999999988853
No 35
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.1e-48 Score=347.67 Aligned_cols=200 Identities=23% Similarity=0.292 Sum_probs=180.0
Q ss_pred ccCCCceeeccccccCCC--------ceEEEEeCCCCC-CCchhhhHHHHHHHH-----HHHcCCCCCCC----------
Q 027338 15 LIGNTPLVYLNNIVNGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE---------- 70 (224)
Q Consensus 15 ~~~~TPl~~~~~l~~~~~--------~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 70 (224)
++++|||++++.+++..| .+||+|+|++|| |||||+|++.+++.. ++++|.+.|+.
T Consensus 72 ~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~ 151 (441)
T PRK02991 72 GIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEF 151 (441)
T ss_pred CccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhh
Confidence 389999999999887654 699999999999 999999999999875 56778776653
Q ss_pred ------cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 027338 71 ------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 144 (224)
Q Consensus 71 ------~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (224)
++||++|+||||+|+|++|+.+|++|+||||.++++.|++.++.|||+|+.++. +++++...+++++++.++
T Consensus 152 ~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~ 229 (441)
T PRK02991 152 RQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPN 229 (441)
T ss_pred hhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999994 688999999999887667
Q ss_pred eEEcCCCCCCccHHHHHHhHHHHHHhhhCC--------CCCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEcCCCCCC
Q 027338 145 AYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPV 215 (224)
Q Consensus 145 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~pvGtGg~~aGi~~~~~~~-~~~~~vigve~~~~~~ 215 (224)
.||+++++++.. +.||+|+++||++|++. .||+||+|+|+||+++|++.++|+. .|+++||+|||+++++
T Consensus 230 ~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~ 308 (441)
T PRK02991 230 CYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 308 (441)
T ss_pred eEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChH
Confidence 899999987776 89999999999999952 2679999999999999999999997 6889999999999987
Q ss_pred cC
Q 027338 216 LS 217 (224)
Q Consensus 216 ~~ 217 (224)
+.
T Consensus 309 ~~ 310 (441)
T PRK02991 309 ML 310 (441)
T ss_pred HH
Confidence 64
No 36
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.6e-48 Score=341.33 Aligned_cols=200 Identities=23% Similarity=0.304 Sum_probs=182.4
Q ss_pred HhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
++++..+++|||++++.++...|.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 46888999999999999988788899999999999999999999999999999886 7899999999999999999
Q ss_pred HHCCCeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 027338 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (224)
Q Consensus 90 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 168 (224)
+.+|++|+||||++ .+..|+++++.|||+|+.++. +++++.+.+++++++. ++++++ +.||.+ ..||.|+++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHH
Confidence 99999999999997 589999999999999999994 5788888999988774 666666 458888 68999999999
Q ss_pred HhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-----cEEEEEcCCCCCCcCCC
Q 027338 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-----IKLYGIEPTESPVLSGG 219 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~-----~~vigve~~~~~~~~~~ 219 (224)
++|++..||+||+|+|+||+++|++++||+++|+ ++||+|||++++++..+
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g 225 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQG 225 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhC
Confidence 9999767999999999999999999999998877 89999999999876544
No 37
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-48 Score=336.31 Aligned_cols=203 Identities=23% Similarity=0.275 Sum_probs=185.0
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++.+.+++|||++++.+++..|.+||+|+|++|||||||||++.+++..+.++.. .++||++|+||||+|+|
T Consensus 9 ~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA 84 (317)
T PRK06815 9 EAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVA 84 (317)
T ss_pred HHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHH
Confidence 46788999999999999999988788899999999999999999999999987644322 25799999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|++|||.++++.|++.++.+||+|+.++. ++.++...+++++++. +.+|++||+|+.+ +.|++++++
T Consensus 85 ~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~ 160 (317)
T PRK06815 85 LAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGM 160 (317)
T ss_pred HHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHH
Confidence 99999999999999999999999999999999999995 4778888888887775 8899999999987 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
||++|++ ++|+||+|+|+||+++|++.++++++|+++||||||++++++.+
T Consensus 161 Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~ 211 (317)
T PRK06815 161 ELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYT 211 (317)
T ss_pred HHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHH
Confidence 9999995 69999999999999999999999999999999999999988753
No 38
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.2e-48 Score=354.10 Aligned_cols=201 Identities=26% Similarity=0.390 Sum_probs=186.0
Q ss_pred HhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
.++.+.+.+|||+++++|++..|.+||+|+|++||+||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 47788999999999999998888999999999999999999999999988764322 26799999999999999999
Q ss_pred HHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 027338 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (224)
+++|++|+||||.+++..|++.++.+||+|+.++. +++++...+++++++. +++|++||+||.+ +.|++|+|+||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHH
Confidence 99999999999999999999999999999999984 6899999999998875 8899999999998 899999999999
Q ss_pred hhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 170 ~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
+|++..+|+||+|+||||+++|++.++|..+|+++||||||++++++.+
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~ 212 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKA 212 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 9996559999999999999999999999999999999999999998753
No 39
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=4.3e-48 Score=332.71 Aligned_cols=203 Identities=25% Similarity=0.361 Sum_probs=188.3
Q ss_pred cchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHH
Q 027338 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~al 85 (224)
...++.+.+.+++|||+++++|+..+|.+||+|+|++|||||||||.+.+++.++.+++. .++||++|+||||+|+
T Consensus 5 ~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~al 80 (304)
T cd01562 5 LAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGV 80 (304)
T ss_pred HHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHH
Confidence 346788999999999999999988888999999999999999999999999999988763 2579999999999999
Q ss_pred HHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 027338 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (224)
Q Consensus 86 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (224)
|++|+++|++|++|||.+.+..|+++|+.+||+|+.+++ +++++...+++++++. ++||++|++|+.+ ..|+.+++
T Consensus 81 A~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~ 156 (304)
T cd01562 81 AYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIG 156 (304)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHH
Confidence 999999999999999999999999999999999999996 4788889999998885 8899999999987 78899999
Q ss_pred HHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 166 ~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
+||++|++ .||+||+|+|||||++|+++++|..++.++||+|||.+++++.
T Consensus 157 ~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~ 207 (304)
T cd01562 157 LEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMA 207 (304)
T ss_pred HHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 99999996 5999999999999999999999999999999999999988764
No 40
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1e-47 Score=332.78 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=180.9
Q ss_pred hhcccCCCceeeccccccCCC-ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHH
Q 027338 12 VTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (224)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 90 (224)
-.+.+++|||+++++|+...| .+||+|+|++|||||||+|++.+++.++.++|. ++||++|+||||+|+|++|+
T Consensus 9 ~~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa 83 (319)
T PRK06381 9 EEKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFAR 83 (319)
T ss_pred ccccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHH
Confidence 346799999999999998887 699999999999999999999999999999986 78999999999999999999
Q ss_pred HCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCC-CCccHHHHHHhHHHHHH
Q 027338 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELW 169 (224)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~ 169 (224)
.+|++|++|||...+..|+++++.|||+|+.++. +++++...+++++++. ++|++++++ |+...+.||.|+++||+
T Consensus 84 ~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 160 (319)
T PRK06381 84 LYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIY 160 (319)
T ss_pred HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999995 4788888888887774 889998886 76322789999999999
Q ss_pred hhhCCCCCEEEEccCchhHHHHHHHHHHhc------CCCcEEEEEcCCCCCCcC
Q 027338 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEK------NPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 170 ~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~------~~~~~vigve~~~~~~~~ 217 (224)
+|++..||+||+|+|+||+++|++.+|++. +|.++||+|||.+++++.
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~ 214 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIV 214 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHH
Confidence 999767999999999999999999999998 799999999999986653
No 41
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-47 Score=334.10 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=176.9
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..+++++..+.+|||++++.+ +||+|+|++|||||||+|++.+++..+.+++. .++||++|+||||.|+|
T Consensus 28 ~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~alA 97 (349)
T PRK08813 28 AAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQGVA 97 (349)
T ss_pred HHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHHHHH
Confidence 467889999999999998764 49999999999999999999999999999886 24699999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+.+|++|+||||.++++.|++.++.|||+|+.++. +++++...+++++++. ++||+++|+|+.+ +.||+|+|+
T Consensus 98 ~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~ 173 (349)
T PRK08813 98 WSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGI 173 (349)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999984 6899999999998875 8999999999998 889999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
||++|. ||+||+|+|+||+++|++.++|+ +.++||||||++++++
T Consensus 174 EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~ 218 (349)
T PRK08813 174 ELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSM 218 (349)
T ss_pred HHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchH
Confidence 999974 79999999999999999999995 5699999999998775
No 42
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=332.55 Aligned_cols=203 Identities=21% Similarity=0.262 Sum_probs=190.7
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..+..+...+-.|||.+.-.|++..|.++|+|+|++||+||||.|++.|++.+.-++++ +.+|+++|.||||.|+|
T Consensus 55 ~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~A 130 (457)
T KOG1250|consen 55 SAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAA 130 (457)
T ss_pred hhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHH
Confidence 34567888999999999989999999999999999999999999999999998877775 47899999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
|+|+++|++++||||..++.-|++.++.+||+|+..+ .+++++...+.+++++. ++.|+++||+|+. ++|++|++.
T Consensus 131 yaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G--~~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~ 206 (457)
T KOG1250|consen 131 YAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSG--EDWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGL 206 (457)
T ss_pred HHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEec--ccHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHH
Confidence 9999999999999999999999999999999999999 57899999999999987 9999999999998 899999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
||++|+...+++|+||||+||+++||+.+++..+|+++|||||+++|.++.
T Consensus 207 EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~ 257 (457)
T KOG1250|consen 207 EILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFN 257 (457)
T ss_pred HHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHH
Confidence 999999766669999999999999999999999999999999999998764
No 43
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.3e-47 Score=339.88 Aligned_cols=199 Identities=24% Similarity=0.304 Sum_probs=180.4
Q ss_pred ccCCCceeeccccccCC--------CceEEEEeCCCCC-CCchhhhHHHHHHHH-----HHHcCCCCCCC----------
Q 027338 15 LIGNTPLVYLNNIVNGC--------VARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE---------- 70 (224)
Q Consensus 15 ~~~~TPl~~~~~l~~~~--------~~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 70 (224)
.+++|||++++.+++.+ +.+||+|+|++|| |||||+|++.+++.. +.++|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 89999999999998743 4699999999999 999999999999864 77889887763
Q ss_pred ------cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 027338 71 ------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 144 (224)
Q Consensus 71 ------~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (224)
++||++|+||||+|+|++|+.+|++|+||||.++++.|++.++.|||+|+.++. +++++...+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 489999999999999999999999999999999999999999999999999995 688999999999888767
Q ss_pred eEEcCCCCCCccHHHHHHhHHHHHHhhhCC--------CCCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEcCCCCCC
Q 027338 145 AYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPV 215 (224)
Q Consensus 145 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~pvGtGg~~aGi~~~~~~~-~~~~~vigve~~~~~~ 215 (224)
.||+++ .|+.+.+.||+|+++||++|++. .||+|++|+|+||+++||+.++|+. +|+++||+|||+++++
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 888887 45556689999999999999952 4779999999999999999999997 8999999999999987
Q ss_pred c
Q 027338 216 L 216 (224)
Q Consensus 216 ~ 216 (224)
+
T Consensus 304 ~ 304 (431)
T TIGR02035 304 M 304 (431)
T ss_pred H
Confidence 5
No 44
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-47 Score=329.89 Aligned_cols=197 Identities=24% Similarity=0.384 Sum_probs=179.8
Q ss_pred chhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHH
Q 027338 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA 86 (224)
..++++...+++|||++++.++.. +.+||+|+|++|||||||+|++.+++..+.+ + + ++||++|+||||+|+|
T Consensus 12 ~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~----~-~~vv~aSsGN~g~a~A 84 (310)
T PRK08246 12 AAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P----A-AGVVAASGGNAGLAVA 84 (310)
T ss_pred HHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c----C-CeEEEeCCCHHHHHHH
Confidence 356789999999999999998866 7899999999999999999999999988765 2 2 7899999999999999
Q ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++|+++|++|+||||...++.|+++++.+||+|+.++. ++.++.+.+++++++. ++||++||+||.+ +.|++|+++
T Consensus 85 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~ 160 (310)
T PRK08246 85 YAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGL 160 (310)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHH
Confidence 99999999999999999999999999999999999985 4778888888887775 8999999999998 789999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
||++|+ +.||+||+|+|+||+++|++.+++. +++||+|||++++++.+
T Consensus 161 Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~ 208 (310)
T PRK08246 161 EIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHA 208 (310)
T ss_pred HHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHH
Confidence 999999 5799999999999999999999964 48999999999988753
No 45
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.9e-47 Score=335.09 Aligned_cols=200 Identities=24% Similarity=0.278 Sum_probs=181.2
Q ss_pred HhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
++++..+++|||++++.++...|.+||+|+|++|||||||||++.+++..++++|. ++||++|+||||.|+|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 45788999999999999988778899999999999999999999999999999886 6899999999999999999
Q ss_pred HHCCCeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 027338 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (224)
Q Consensus 90 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 168 (224)
+.+|++|+||||.+ .++.|++.++.+||+|+.+++ +++++.+.++++.++. +++++++ .||.+ +.||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHH
Confidence 99999999999997 689999999999999999995 5788889999988776 4777775 58888 68899999999
Q ss_pred HhhhCCCCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEcCCCCCCcCCC
Q 027338 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLSGG 219 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~------~~~vigve~~~~~~~~~~ 219 (224)
++|++..+|+||+|+|+||+++|++.+++...+ .++||+|||++++++..+
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g 229 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRG 229 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhC
Confidence 999976799999999999999999999998743 499999999999877654
No 46
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.6e-47 Score=339.99 Aligned_cols=198 Identities=27% Similarity=0.248 Sum_probs=183.5
Q ss_pred hhhcccCCCceeeccccccCCC-ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
.++..+++|||++++++++.+| .+||+|+|++|||||||||++.+++.+|.++|. ++||++|+||||.|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 3788999999999999988877 599999999999999999999999999999886 7899999999999999999
Q ss_pred HHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 027338 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (224)
+++|++|+||||.++++.|+++++.|||+|+.+++ +++++.+.+++++++. ++|+++++.||.+ +.|+.|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence 99999999999999999999999999999999995 4778888888887775 7999999999998 789999999999
Q ss_pred hhhCCC-CCEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEcCCCCCCcC
Q 027338 170 KGSGGR-IDALVSGIGTGGTITGAGKFLKEK-------NPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 170 ~q~~~~-~d~iv~pvGtGg~~aGi~~~~~~~-------~~~~~vigve~~~~~~~~ 217 (224)
+|++.+ ||+||+|+|+|++++|++.+|+++ .+.++||+|||++++++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~ 278 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIV 278 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHH
Confidence 999754 999999999999999999999987 488999999999998764
No 47
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=2.7e-47 Score=340.62 Aligned_cols=200 Identities=20% Similarity=0.228 Sum_probs=185.3
Q ss_pred hhhcccCCCceeeccccccCCC-ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
+++..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..|.+.|. ++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999998888 599999999999999999999999999999886 7899999999999999999
Q ss_pred HHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 027338 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (224)
+++|++|+||||.+++..|+.+++.|||+|+.+++ +++++.+.+++++++.+++||++++.||.. +.|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence 99999999999999999999999999999999995 578888999998887668899999888887 789999999999
Q ss_pred hhhCCC-CCEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEcCCCCCCcCC
Q 027338 170 KGSGGR-IDALVSGIGTGGTITGAGKFLKEK-------NPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 170 ~q~~~~-~d~iv~pvGtGg~~aGi~~~~~~~-------~~~~~vigve~~~~~~~~~ 218 (224)
+|++.+ ||+||+|+|+||+++|++.+|+++ .+.++||+|||++++++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~ 290 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQ 290 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHH
Confidence 999654 999999999999999999999997 5789999999999877763
No 48
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=4.4e-47 Score=329.36 Aligned_cols=198 Identities=25% Similarity=0.258 Sum_probs=182.6
Q ss_pred HhhhcccCCCceeeccccccCCC-ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHH
Q 027338 10 KDVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 88 (224)
++++..+++|||+++++|+...+ .+||+|+|++|||||||+|++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 46888999999999999987666 799999999999999999999999999999885 789999999999999999
Q ss_pred HHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 027338 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (224)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 168 (224)
|+.+|++|++|||.++++.|+++++.+||+|+.++. ++.++...+++++++. .+|++||+|+.+ ..||.++++||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence 999999999999999999999999999999999995 5788888888888775 789999999998 67999999999
Q ss_pred HhhhCC-CCCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEcCCCCCCcC
Q 027338 169 WKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------PNIKLYGIEPTESPVLS 217 (224)
Q Consensus 169 ~~q~~~-~~d~iv~pvGtGg~~aGi~~~~~~~~------~~~~vigve~~~~~~~~ 217 (224)
++|++. .+|+||+|+||||+++|++.+++... ++++||+|||.+++.++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~ 219 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIV 219 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHH
Confidence 999963 69999999999999999999999875 58999999999987664
No 49
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=9.5e-47 Score=330.41 Aligned_cols=202 Identities=26% Similarity=0.316 Sum_probs=179.2
Q ss_pred hhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHH
Q 027338 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 87 (224)
...+++..+++|||++++.+++..|.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|+
T Consensus 18 ~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~ 92 (352)
T PRK06721 18 NTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAA 92 (352)
T ss_pred CCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHH
Confidence 3446788899999999999988788899999999999999999999999999999886 78999999999999999
Q ss_pred HHHHCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 88 MAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 88 ~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
+|+.+|++|++|||... ++.|+++++.+||+|+.+++ +++++.+.+++++++. +.++++ +.||.+ ..||.|+++
T Consensus 93 ~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~ 167 (352)
T PRK06721 93 YAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAF 167 (352)
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHH
Confidence 99999999999999874 78999999999999999994 5788888999988875 666665 568887 778999999
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHH----HHHHHhcC-CCcEEEEEcCCCCCCcCCC
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGA----GKFLKEKN-PNIKLYGIEPTESPVLSGG 219 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi----~~~~~~~~-~~~~vigve~~~~~~~~~~ 219 (224)
||++|++..+|+||+|+|+||+++|+ ++++|..+ |+++||+|||++++++.++
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g 225 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKG 225 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhC
Confidence 99999976799999999999999975 45556554 8999999999999877654
No 50
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=2.1e-46 Score=325.93 Aligned_cols=186 Identities=22% Similarity=0.238 Sum_probs=167.8
Q ss_pred hhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 90 (224)
.++.++|+|||++.+ +||+|+|++|||||||||++.+++..+.++|. ++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478999999999864 59999999999999999999999999999875 78999999999999999999
Q ss_pred HCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 027338 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (224)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (224)
++|++|+||||.++++.|+++++.|||+|+.+++ +++++.+. +++ .+.+|+++++||.+ +.|++|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~-~g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AEN-SGYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHh-cCeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 45554433 344 37789999999998 8899999999999
Q ss_pred hhCC-CCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEcCCCCCCcC
Q 027338 171 GSGG-RIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLS 217 (224)
Q Consensus 171 q~~~-~~d~iv~pvGtGg~~aGi~~~~~~~~~------~~~vigve~~~~~~~~ 217 (224)
|++. .||+||+|+|+|++++|++++|+++.+ .+|+|+|||++++++.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~ 243 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLC 243 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHH
Confidence 9963 599999999999999999999998864 3799999999987765
No 51
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.8e-46 Score=337.54 Aligned_cols=195 Identities=21% Similarity=0.223 Sum_probs=179.5
Q ss_pred hhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 90 (224)
.++..+++|||++++ ++..+|.+||+|+|++|||||||||++.+++.+|++.|. ++||++|+||||.|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 367899999999984 666677899999999999999999999999999998875 78999999999999999999
Q ss_pred HCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 027338 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (224)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (224)
++|++|+||||.++++.|+++++.|||+|+.+++ +++++.+.+++++++. ++|++++++||.+ +.|+.|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999984 5888988999987775 8999999999998 8899999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEcCCCCCCcC
Q 027338 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLS 217 (224)
Q Consensus 171 q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~------~~~vigve~~~~~~~~ 217 (224)
|++ ||+||+|+|+|++++|++.+|+++.+ .++||+|||++++++.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~ 259 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIA 259 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHH
Confidence 995 99999999999999999999999875 3799999999887764
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=3.1e-46 Score=331.98 Aligned_cols=197 Identities=25% Similarity=0.254 Sum_probs=181.1
Q ss_pred hhhcccCCCceeeccccccCCCc-eEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCVA-RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
.++..+++|||+++++++..+|. +||+|+|++|||||||||++.+++.++.++|. ++||++|+||||.|+|++|
T Consensus 60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~a 134 (397)
T PRK06260 60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYA 134 (397)
T ss_pred cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 57889999999999999887886 99999999999999999999999999999886 7899999999999999999
Q ss_pred HHCCCeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 027338 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (224)
Q Consensus 90 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 168 (224)
+++|++|+||||.+ ++..|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ ..|+.|+++||
T Consensus 135 a~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei 209 (397)
T PRK06260 135 ARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEI 209 (397)
T ss_pred HHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHH
Confidence 99999999999997 789999999999999999995 5888888999988875 78899887 8888 78999999999
Q ss_pred HhhhCC-CCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEcCCCCCCcC
Q 027338 169 WKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLS 217 (224)
Q Consensus 169 ~~q~~~-~~d~iv~pvGtGg~~aGi~~~~~~~~~------~~~vigve~~~~~~~~ 217 (224)
++|++. .||+||+|+|+||+++|++.+|+++.+ .+|||+|||++++++.
T Consensus 210 ~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~ 265 (397)
T PRK06260 210 ADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIV 265 (397)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHH
Confidence 999976 699999999999999999999998763 3799999999998763
No 53
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=303.79 Aligned_cols=201 Identities=22% Similarity=0.359 Sum_probs=186.8
Q ss_pred cchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHH
Q 027338 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~al 85 (224)
...++|+.+++..||++.++.+.+..|.+||+|+|++|.+|+||.|+|.+.+..+.++.. .++|++.||||||.||
T Consensus 13 ~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaqAl 88 (323)
T KOG1251|consen 13 RAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQAL 88 (323)
T ss_pred HHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHHHH
Confidence 457899999999999999999998899999999999999999999999999998874433 3789999999999999
Q ss_pred HHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 027338 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (224)
Q Consensus 86 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (224)
|++|+.+|+|++||||.+++..|+..++.||++|+++++. .+++...++++.++. +.+.++||++|.. +.|++|++
T Consensus 89 alaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA 164 (323)
T KOG1251|consen 89 ALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIA 164 (323)
T ss_pred HHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHH
Confidence 9999999999999999999999999999999999999964 567888889998886 8999999999998 99999999
Q ss_pred HHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCC
Q 027338 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV 215 (224)
Q Consensus 166 ~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~ 215 (224)
.|++||+ +.+|++|+|+|+||+++|++.+.+...|+++|++|||++++.
T Consensus 165 ~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d 213 (323)
T KOG1251|consen 165 LELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADD 213 (323)
T ss_pred HHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccch
Confidence 9999999 589999999999999999999999999999999999987654
No 54
>PLN02569 threonine synthase
Probab=100.00 E-value=1.9e-45 Score=331.98 Aligned_cols=202 Identities=18% Similarity=0.125 Sum_probs=181.2
Q ss_pred hhhcccCCCceeeccccccC-CC-ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNG-CV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~-~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 88 (224)
.++.++++|||++++++.+. .| .+||+|+|++|||||||||++.+++..+.+.|.......+||++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 37889999999999999877 77 48999999999999999999999999998876522112579999999999999999
Q ss_pred HHHCCCeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 027338 89 AAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 89 a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 167 (224)
|+.+|++|+||||.+ .+..|+.+++.|||+|+.+++ +++++.+.++++.++. ++|+++++ ||.+ +.|+.|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHH
Confidence 999999999999996 788999999999999999995 6899999999988776 68999988 8988 7899999999
Q ss_pred HHhhhCCC-CCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEcCCCCCCcC
Q 027338 168 LWKGSGGR-IDALVSGIGTGGTITGAGKFLKEKN------PNIKLYGIEPTESPVLS 217 (224)
Q Consensus 168 i~~q~~~~-~d~iv~pvGtGg~~aGi~~~~~~~~------~~~~vigve~~~~~~~~ 217 (224)
|++|++++ ||+||+|+|+||+++|++.+|+++. +.+|||+|||++++++.
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~ 337 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLY 337 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHH
Confidence 99999765 9999999999999999999999864 45799999999998876
No 55
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=4.9e-45 Score=304.71 Aligned_cols=187 Identities=42% Similarity=0.607 Sum_probs=175.6
Q ss_pred CceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEE
Q 027338 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 98 (224)
Q Consensus 19 TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~i 98 (224)
|||+++++++...+.+||+|+|+.|||||||||++.+++..+.++|.+ ++ .+||++|+||+|.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999999865 44 7899999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCC-CCC
Q 027338 99 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RID 177 (224)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d 177 (224)
|+|.+.++.++++++.+|++|+.++.. ++++...+++++++.+++||+++|+|+.+ +.|+.++++||++|++. .+|
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999954 78889999999888668999999999988 77888999999999976 599
Q ss_pred EEEEccCchhHHHHHHHHHHhcCCCcEEEEEcC
Q 027338 178 ALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEP 210 (224)
Q Consensus 178 ~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~ 210 (224)
+||+|+|+||+++|++.++++.+|.++||+|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 999999999999999999999999999999998
No 56
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2.8e-45 Score=320.52 Aligned_cols=190 Identities=22% Similarity=0.261 Sum_probs=173.7
Q ss_pred hhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHH
Q 027338 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 91 (224)
++..++.|||+++. .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 67889999999873 489999999999999999999999999999886 789999999999999999999
Q ss_pred CCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhh
Q 027338 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (224)
Q Consensus 92 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 171 (224)
+|++|+||||.++++.|+++++.|||+|+.+++ +++++...+++++++. +.+|++++.||.+ +.|++|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHH
Confidence 999999999999999999999999999999995 3567778888887774 7788999999988 78999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEcCCCCCCcCC
Q 027338 172 SGGRIDALVSGIGTGGTITGAGKFLKEKN------PNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 172 ~~~~~d~iv~pvGtGg~~aGi~~~~~~~~------~~~~vigve~~~~~~~~~ 218 (224)
++ .||+||+|+|+|++++|++++|+++. +.+++|+|||++++++..
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~ 253 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCK 253 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHh
Confidence 95 79999999999999999999999874 568999999999877753
No 57
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=5.3e-45 Score=323.71 Aligned_cols=206 Identities=22% Similarity=0.192 Sum_probs=179.2
Q ss_pred hhHhh--hcccCCCceeeccccccCCC-ceEEEEeCCC-CCCCchhhhHHHHHHHHHHHcCCCC----------------
Q 027338 8 IAKDV--TELIGNTPLVYLNNIVNGCV-ARIAAKLEMM-EPCSSVKDRIGYSMISDAEAKGLIT---------------- 67 (224)
Q Consensus 8 ~~~~~--~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~-~ptGS~K~R~a~~~~~~a~~~g~~~---------------- 67 (224)
..+++ ...+.+|||++++.|++.+| .+||+|+|++ ||+||||+|++.+.+..+..+..-.
T Consensus 32 a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (399)
T PRK08206 32 ARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVR 111 (399)
T ss_pred HHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHH
Confidence 45566 56889999999999998888 5999999998 5999999999999888765321100
Q ss_pred ---CCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 027338 68 ---PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 144 (224)
Q Consensus 68 ---~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (224)
++ .+||++|+||||+|+|++|+.+|++|+||||.++++.|++.++.|||+|+.++. +++++...+++++++. +
T Consensus 112 ~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g 187 (399)
T PRK08206 112 EKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-G 187 (399)
T ss_pred HhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-C
Confidence 11 369999999999999999999999999999999999999999999999999994 5888888999988775 7
Q ss_pred eEEcC-----CCCC-CccHHHHHHhHHHHHHhhhCC---CCCEEEEccCchhHHHHHHHHHHhcC--CCcEEEEEcCCCC
Q 027338 145 AYMLQ-----QFEN-PANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKN--PNIKLYGIEPTES 213 (224)
Q Consensus 145 ~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~pvGtGg~~aGi~~~~~~~~--~~~~vigve~~~~ 213 (224)
+||++ ||+| +.+.+.||.|+++||++|++. .||+||+|+|+||+++|++.++++.+ +.++||+|||+++
T Consensus 188 ~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs 267 (399)
T PRK08206 188 WVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQA 267 (399)
T ss_pred CEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 88886 6765 566688999999999999965 59999999999999999999999884 4799999999999
Q ss_pred CCcC
Q 027338 214 PVLS 217 (224)
Q Consensus 214 ~~~~ 217 (224)
+++.
T Consensus 268 ~~l~ 271 (399)
T PRK08206 268 DCLY 271 (399)
T ss_pred chHH
Confidence 8874
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.3e-43 Score=309.63 Aligned_cols=206 Identities=22% Similarity=0.219 Sum_probs=176.0
Q ss_pred hhHhhhcccCCCceeeccccccCCC-ceEEEEeCCCCC-CCchhhhHHHHHHHHHHHc----------------CCCC--
Q 027338 8 IAKDVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEP-CSSVKDRIGYSMISDAEAK----------------GLIT-- 67 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~p-tGS~K~R~a~~~~~~a~~~----------------g~~~-- 67 (224)
.+.++ ..+.+|||++++.|++.+| .+||+|+|++|+ +||||+|++.+.+..+.++ +.+.
T Consensus 13 ~~~~~-~~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (376)
T TIGR01747 13 FHKKI-PGYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEK 91 (376)
T ss_pred HHHhC-CCCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhh
Confidence 34445 4559999999999998888 599999999985 8999999999999887553 1111
Q ss_pred CCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE
Q 027338 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 147 (224)
Q Consensus 68 ~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (224)
.+..+||++|+||||+|+|++|+.+|++|+||||.++++.|++.++.|||+|+.+++ +++++...+++++++. ++|+
T Consensus 92 ~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~ 168 (376)
T TIGR01747 92 MGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVV 168 (376)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEE
Confidence 123789999999999999999999999999999999999999999999999999994 5888888899888775 6888
Q ss_pred cC-----CCCC--CccHHHHHHhHHHHHHhhhCC----CCCEEEEccCchhHHHHHHHHHHhcCC-C-cEEEEEcCCCCC
Q 027338 148 LQ-----QFEN--PANPKIHYETTGPELWKGSGG----RIDALVSGIGTGGTITGAGKFLKEKNP-N-IKLYGIEPTESP 214 (224)
Q Consensus 148 ~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~~----~~d~iv~pvGtGg~~aGi~~~~~~~~~-~-~~vigve~~~~~ 214 (224)
++ +|+| |.. +.||+|+++||++|++. .||+||+|+|+||+++|++.++++..+ + ++||+|||++++
T Consensus 169 ~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~ 247 (376)
T TIGR01747 169 VQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKAD 247 (376)
T ss_pred eccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCC
Confidence 77 4655 433 78999999999999962 699999999999999999999977654 3 699999999999
Q ss_pred CcCC
Q 027338 215 VLSG 218 (224)
Q Consensus 215 ~~~~ 218 (224)
++..
T Consensus 248 ~~~~ 251 (376)
T TIGR01747 248 CLYQ 251 (376)
T ss_pred HHHH
Confidence 9854
No 59
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.1e-43 Score=306.85 Aligned_cols=200 Identities=22% Similarity=0.190 Sum_probs=175.5
Q ss_pred hHhhhcccCCCceeeccccccCCCc-eEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHH
Q 027338 9 AKDVTELIGNTPLVYLNNIVNGCVA-RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 87 (224)
.+.++..+++|||+++++++...+. +||+|+|++|||||||||++.+++..+.++|. .+||++|+||||.|+|+
T Consensus 14 ~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~ 88 (328)
T TIGR00260 14 KDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAA 88 (328)
T ss_pred hhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHH
Confidence 3457788899999999999887776 99999999999999999999999999998886 68999999999999999
Q ss_pred HHHHCCCeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCC-CccHHHHHHhHH
Q 027338 88 MAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFEN-PANPKIHYETTG 165 (224)
Q Consensus 88 ~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~t~~ 165 (224)
+|+.+|++|+||||.. .++.|++.++.+||+|+.++. +++++...++++.++. +.++++++++ |.+ +.||.|++
T Consensus 89 ~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~ 164 (328)
T TIGR00260 89 YAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYA 164 (328)
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHH
Confidence 9999999999999998 899999999999999999995 5888988899988775 4555554421 776 67889999
Q ss_pred HHHHhhhCC-CCCEEEEccCchhHHHHHHHHHHhcCC-----CcEEEEEcCCCCCCcC
Q 027338 166 PELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP-----NIKLYGIEPTESPVLS 217 (224)
Q Consensus 166 ~Ei~~q~~~-~~d~iv~pvGtGg~~aGi~~~~~~~~~-----~~~vigve~~~~~~~~ 217 (224)
+||++|++. .+|+||+|+|+||+++|++.++++... .+++++|||++++++.
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~ 222 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIV 222 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHH
Confidence 999999974 799999999999999999999997410 2399999999996553
No 60
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.1e-42 Score=308.19 Aligned_cols=202 Identities=22% Similarity=0.186 Sum_probs=171.6
Q ss_pred cccCCCceeeccccccCCC-ceEEEEeCCCCC-CCchhhhHHHHHHHHHHH--cCCC--------------C--CCCcEE
Q 027338 14 ELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEP-CSSVKDRIGYSMISDAEA--KGLI--------------T--PGESVL 73 (224)
Q Consensus 14 ~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~p-tGS~K~R~a~~~~~~a~~--~g~~--------------~--~g~~~v 73 (224)
..+.+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.+ .|.. . ....+|
T Consensus 37 ~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 37 PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 4669999999999998888 699999999985 999999999999987532 2210 0 012379
Q ss_pred EeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcC----
Q 027338 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ---- 149 (224)
Q Consensus 74 v~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 149 (224)
|++|+||||+|+|++|+.+|++|+||||.++++.|++.++.|||+|+.++. +++++.+.+++++++. ++||++
T Consensus 117 v~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccc
Confidence 999999999999999999999999999999999999999999999999994 5788899999998875 788885
Q ss_pred -CCCCC-ccHHHHHHhHHHHHHhhhC----CCCCEEEEccCchhHHHHHHHHHHhc-CCC-cEEEEEcCCCCCCcCC
Q 027338 150 -QFENP-ANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEK-NPN-IKLYGIEPTESPVLSG 218 (224)
Q Consensus 150 -~~~~~-~~~~~g~~t~~~Ei~~q~~----~~~d~iv~pvGtGg~~aGi~~~~~~~-~~~-~~vigve~~~~~~~~~ 218 (224)
+|+|. ...+.||+|+++||++|++ ..||+||+|+|+||+++|++.++++. .++ ++||+|||++++++..
T Consensus 194 ~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~ 270 (396)
T TIGR03528 194 EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYR 270 (396)
T ss_pred cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHH
Confidence 57652 2235799999999999996 26999999999999999999999554 444 5999999999998864
No 61
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.1e-42 Score=300.95 Aligned_cols=205 Identities=21% Similarity=0.189 Sum_probs=174.5
Q ss_pred cchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCC--CchhhhHHHHHHHHHHHcCCCCCCCcEEEeec--CCcH
Q 027338 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEPT--SGNT 81 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--~GN~ 81 (224)
+..+++++..+++|||++++.+++..|.+||+|+|++||+ ||||+|++.+++.++.++|. ++||+++ +|||
T Consensus 3 ~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~ 77 (331)
T PRK03910 3 LARFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNH 77 (331)
T ss_pred cCcCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHH
Confidence 4456778899999999999999887788999999999997 59999999999999999886 6788864 5999
Q ss_pred HHHHHHHHHHCCCeEEEEECCCCCH--------HHHHHHHHcCCEEEEeCCCCChHH-HHHHHHHHHHhCCC-eEEcCCC
Q 027338 82 GIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELVLTDPAKGMKG-AVQKAEEILAKTPN-AYMLQQF 151 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp~~~~~--------~~~~~~~~~Ga~V~~~~~~~~~~~-~~~~a~~~~~~~~~-~~~~~~~ 151 (224)
|.|+|++|+.+|++|++|||...+. .+++.++.+||+|+.++.+.+..+ +...++++.++.+. +++++++
T Consensus 78 g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 157 (331)
T PRK03910 78 ARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGG 157 (331)
T ss_pred HHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCC
Confidence 9999999999999999999998775 456899999999999996533333 34556666665433 3456778
Q ss_pred CCCccHHHHHHhHHHHHHhhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 152 ENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 152 ~~~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
.|+.+ ..|+.++++||++|++. +||+||+|+|||||++|+++++++++|+++||||||++++.+
T Consensus 158 ~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~ 224 (331)
T PRK03910 158 SNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAE 224 (331)
T ss_pred CCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 88888 66888999999999963 699999999999999999999999999999999999987654
No 62
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1e-41 Score=301.22 Aligned_cols=204 Identities=23% Similarity=0.216 Sum_probs=168.6
Q ss_pred hhcccC-CCceeeccccccCC-CceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 12 VTELIG-NTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 12 ~~~~~~-~TPl~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
...+++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+..++..+++.|+ .+.|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456666 79999999999888 5899999999999999999999999999999886 24566799999999999999
Q ss_pred HHCCCeEEEEECCCCCH---HHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH-HHHhCCCeEEcCCC-C--C--CccHHH
Q 027338 90 AAKQYRLIITMPASMSL---ERRIILRAFGAELVLTDP-AKGMKGAVQKAEE-ILAKTPNAYMLQQF-E--N--PANPKI 159 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~---~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~~-~--~--~~~~~~ 159 (224)
+++|++|+||||..... .++.+|+.+||+|+.++. ..++.++.+.+.+ +.++.++.+|+.+. . + |.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999986433 568899999999999985 3467888777744 55553456666322 1 2 334456
Q ss_pred HHHhHHHHHHhhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC--------CCCcCCCC
Q 027338 160 HYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE--------SPVLSGGK 220 (224)
Q Consensus 160 g~~t~~~Ei~~q~~----~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~--------~~~~~~~~ 220 (224)
|+++++.||.+|+. ..||+||+|||+||+++|++.+|++ .++++||||||.+ ++++..|.
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~ 282 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGK 282 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCC
Confidence 99999999999973 3599999999999999999999986 5899999999999 77776554
No 63
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.4e-41 Score=302.56 Aligned_cols=203 Identities=21% Similarity=0.230 Sum_probs=167.0
Q ss_pred hhhcccCCCceeeccccccCCC--ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEe-ecCCcHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAF 87 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~s~GN~g~alA~ 87 (224)
.+.....+|||+++++|++.+| ++||+|+|++|||||||+|++.+++..++++|. +++|+ +|+||||+|+|+
T Consensus 61 ~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~ 135 (419)
T TIGR01415 61 RYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSL 135 (419)
T ss_pred HHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHH
Confidence 3344446899999999998776 689999999999999999999999999999996 45665 689999999999
Q ss_pred HHHHCCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCCh----------------HHHHHHHHHHHHhCC-CeEE
Q 027338 88 MAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPAKGM----------------KGAVQKAEEILAKTP-NAYM 147 (224)
Q Consensus 88 ~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~~~~----------------~~~~~~a~~~~~~~~-~~~~ 147 (224)
+|+.+|++|+||||... ++.|+.+|+.|||+|+.++.+.+. ..++..+.+++++.+ ..|+
T Consensus 136 aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~ 215 (419)
T TIGR01415 136 AGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYS 215 (419)
T ss_pred HHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999853 568899999999999999964211 012456666665544 4566
Q ss_pred cCCCCCCccHHHHHHhHHHHHHhhhCC---CCCEEEEccCchhHHHHHHHHHHhc----CCCcEEEEEcCCCCCCcCCCC
Q 027338 148 LQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEK----NPNIKLYGIEPTESPVLSGGK 220 (224)
Q Consensus 148 ~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~pvGtGg~~aGi~~~~~~~----~~~~~vigve~~~~~~~~~~~ 220 (224)
++++.|+ ...|+.++|+||++|++. .||+||+|+|+||+++|++.+|.+. .++++||+|||++|++++++.
T Consensus 216 ~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~ 293 (419)
T TIGR01415 216 LGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGE 293 (419)
T ss_pred eCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCc
Confidence 6676663 478999999999999964 4999999999999999999888322 258999999999999998763
No 64
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=7.6e-42 Score=295.06 Aligned_cols=192 Identities=20% Similarity=0.182 Sum_probs=162.4
Q ss_pred ccCCCceeeccccccCCCceEEEEeCCCCCC--CchhhhHHHHHHHHHHHcCCCCCCCcEEEee--cCCcHHHHHHHHHH
Q 027338 15 LIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAA 90 (224)
Q Consensus 15 ~~~~TPl~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--s~GN~g~alA~~a~ 90 (224)
...+|||++++.++...|.+||+|+|++||+ ||||+|++.+++.+++++|. ++||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 3478999999999887788999999999998 99999999999999999986 789997 66999999999999
Q ss_pred HCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH----hCC-CeEEcCCCCCCccHHHHHHhH
Q 027338 91 AKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETT 164 (224)
Q Consensus 91 ~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~ 164 (224)
.+|+++++|||... +..+..+++.|||+|+.++.. ++.+..+.++++++ +.+ .+++++++.|+.+ ..|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence 99999999999965 455677789999999999852 23344444444432 322 3456688889987 5667789
Q ss_pred HHHHHhhhCC--CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCC
Q 027338 165 GPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (224)
Q Consensus 165 ~~Ei~~q~~~--~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~ 213 (224)
++||++|++. ++|+||+|+|||||++|++.++|+.+|+++||||||+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~ 207 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRF 207 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 9999999963 799999999999999999999999999999999998765
No 65
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.8e-41 Score=300.05 Aligned_cols=198 Identities=19% Similarity=0.216 Sum_probs=161.8
Q ss_pred hhhcccC-CCceeeccccccCCC-ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHH
Q 027338 11 DVTELIG-NTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 11 ~~~~~~~-~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 88 (224)
.+..+++ +|||++++++++.+| .+||+|+|++|||||||+|.+..++..++++|. ...|+++|+||||+|+|++
T Consensus 42 ~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~ 117 (385)
T TIGR00263 42 LLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATA 117 (385)
T ss_pred HHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHH
Confidence 3344554 899999999998777 799999999999999999999999999988885 2445579999999999999
Q ss_pred HHHCCCeEEEEECCC-CCH--HHHHHHHHcCCEEEEeCCC-CChHHHH-HHHHHHHHhCCCeEEc-CCCCC----CccHH
Q 027338 89 AAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDPA-KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPK 158 (224)
Q Consensus 89 a~~~G~~~~ivvp~~-~~~--~~~~~~~~~Ga~V~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~ 158 (224)
|+++|++|+||||+. .+. .++++|+.+||+|+.++.. ..+.++. ..++++.++.++.+|+ +++.| +.++.
T Consensus 118 a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~ 197 (385)
T TIGR00263 118 AALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVR 197 (385)
T ss_pred HHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHH
Confidence 999999999999985 443 5788999999999999853 3466664 4445556554455555 44443 24446
Q ss_pred HHHHhHHHHHHhhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCC
Q 027338 159 IHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (224)
Q Consensus 159 ~g~~t~~~Ei~~q~~----~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~ 213 (224)
.|++|+++||++|+. ..||+||+|+|+||+++|++.++.. .|+++||+|||+++
T Consensus 198 ~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs 255 (385)
T TIGR00263 198 DFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGL 255 (385)
T ss_pred HHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCC
Confidence 899999999999973 2589999999999999999998855 69999999999986
No 66
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.8e-41 Score=299.30 Aligned_cols=197 Identities=21% Similarity=0.243 Sum_probs=162.1
Q ss_pred hhcccC-CCceeeccccccCC-CceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 12 VTELIG-NTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 12 ~~~~~~-~TPl~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
+.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..|++.|+ ++.|+++|+||||.|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 446676 59999999999888 5899999999999999999999999999999887 34556689999999999999
Q ss_pred HHCCCeEEEEECCCC-C--HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHH-HHHHhCCCeEEc-CCCCC----CccHHH
Q 027338 90 AAKQYRLIITMPASM-S--LERRIILRAFGAELVLTDP-AKGMKGAVQKAE-EILAKTPNAYML-QQFEN----PANPKI 159 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~-~--~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a~-~~~~~~~~~~~~-~~~~~----~~~~~~ 159 (224)
+++|++|+||||... + ..++.+|+.+||+|+.++. +.++.++...+. ++.++.++.+|+ .+..+ |.+...
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 999999999999853 3 3578899999999999985 345666655554 456553454554 33332 234456
Q ss_pred HHHhHHHHHHhhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCC
Q 027338 160 HYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (224)
Q Consensus 160 g~~t~~~Ei~~q~~----~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~ 213 (224)
||++++.||.+|+. ..||+||+|||+||+++|++.+|++ .|+++||||||.++
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~ 263 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 263 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCC
Confidence 99999999999984 3699999999999999999999975 88999999999985
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=2.6e-41 Score=298.86 Aligned_cols=200 Identities=20% Similarity=0.262 Sum_probs=162.9
Q ss_pred hHhhhcccC-CCceeeccccccCC------CceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcH
Q 027338 9 AKDVTELIG-NTPLVYLNNIVNGC------VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNT 81 (224)
Q Consensus 9 ~~~~~~~~~-~TPl~~~~~l~~~~------~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~ 81 (224)
...+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..|++.|+ +..|++.|+|||
T Consensus 56 ~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNh 131 (410)
T PLN02618 56 AGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQH 131 (410)
T ss_pred HHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHH
Confidence 345677886 89999999999866 4899999999999999999999999999988876 234445679999
Q ss_pred HHHHHHHHHHCCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHH-HHHHHHHhCCCeEEc-CCCC--C
Q 027338 82 GIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGMKGAVQ-KAEEILAKTPNAYML-QQFE--N 153 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--~ 153 (224)
|.|+|++|+++|++|+||||... +..++.+|+.+||+|+.++. +.++.++.. ..+++.++..+.+|+ .+.. +
T Consensus 132 G~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~ 211 (410)
T PLN02618 132 GVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 211 (410)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCC
Confidence 99999999999999999999863 35677899999999999964 356777764 445677764455555 3222 2
Q ss_pred C--ccHHHHHHhHHHHHHhhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCC
Q 027338 154 P--ANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (224)
Q Consensus 154 ~--~~~~~g~~t~~~Ei~~q~----~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~ 213 (224)
| .....+++++|.||.+|+ +..||+||+|||+||+++|++.+|+. .++++||||||+++
T Consensus 212 P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 212 PYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred CCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 2 233578999999997776 34699999999999999999999975 79999999999997
No 68
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2.6e-41 Score=301.16 Aligned_cols=201 Identities=21% Similarity=0.244 Sum_probs=166.3
Q ss_pred hcccCCCceeeccccccCCC--ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEe-ecCCcHHHHHHHHH
Q 027338 13 TELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMA 89 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~s~GN~g~alA~~a 89 (224)
+..+++|||+++++|++.+| .+||+|+|++||+||||+|++..++..+.++|. .++++ .|+||||.|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 46778999999999998776 699999999999999999999999999999996 45665 67899999999999
Q ss_pred HHCCCeEEEEECCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hHHHHHHHHHHHHhCCCeEEcCC
Q 027338 90 AAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAKG----------------MKGAVQKAEEILAKTPNAYMLQQ 150 (224)
Q Consensus 90 ~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~V~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
+.+|++|+||||.. .++.|+++|+.|||+|+.++++.+ +..++.++.+++++.++.+|..+
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 366889999999999999985311 11245666777666545445444
Q ss_pred CCCCccHHHHHHhHHHHHHhhhC---CCCCEEEEccCchhHHHHHHHHHH---hcC-CCcEEEEEcCCCCCCcCCC
Q 027338 151 FENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLK---EKN-PNIKLYGIEPTESPVLSGG 219 (224)
Q Consensus 151 ~~~~~~~~~g~~t~~~Ei~~q~~---~~~d~iv~pvGtGg~~aGi~~~~~---~~~-~~~~vigve~~~~~~~~~~ 219 (224)
+.+ .+.+.|+.++|+||++|+. ..||+||+|+|+||+++|++.+|. ..+ +++|||+|||++|++++++
T Consensus 227 s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g 301 (427)
T PRK12391 227 SVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKG 301 (427)
T ss_pred CCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccc
Confidence 332 2347899999999999995 369999999999999999999773 234 8899999999999999765
No 69
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.5e-41 Score=312.24 Aligned_cols=200 Identities=20% Similarity=0.233 Sum_probs=170.4
Q ss_pred hhcccC-CCceeeccccccC----CC--ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHH
Q 027338 12 VTELIG-NTPLVYLNNIVNG----CV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (224)
Q Consensus 12 ~~~~~~-~TPl~~~~~l~~~----~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~a 84 (224)
...++| +|||+++++|+.. +| .+||+|+|++|||||||+|++.+++..+++.|+ .++|+++|+||||.|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 457788 9999999998743 34 799999999999999999999999999999997 367889999999999
Q ss_pred HHHHHHHCCCeEEEEECCC---CCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHHHhCC-CeEEcCCCCCC----
Q 027338 85 LAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPA-KGMKGAVQKA-EEILAKTP-NAYMLQQFENP---- 154 (224)
Q Consensus 85 lA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~---- 154 (224)
+|++|+++|++|+||||.. .+..|+.+|+.|||+|+.++.. .++.++...+ +++.++.+ ..|+++++.|+
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 3678999999999999999843 3567775544 55666533 45778888664
Q ss_pred ccHHHHHHhHHHHHHhhhCC-----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 155 ANPKIHYETTGPELWKGSGG-----RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 155 ~~~~~g~~t~~~Ei~~q~~~-----~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
.++..|+.++|.||++|+.. .||+||+|||+||+++|++.+|+. .|+++||||||.++...
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~ 540 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPE 540 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCcc
Confidence 34568999999999999952 699999999999999999999976 78999999999997433
No 70
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=4.1e-41 Score=296.13 Aligned_cols=201 Identities=20% Similarity=0.177 Sum_probs=162.9
Q ss_pred hhccc-CCCceeeccccccCC-CceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEe-ecCCcHHHHHHHH
Q 027338 12 VTELI-GNTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFM 88 (224)
Q Consensus 12 ~~~~~-~~TPl~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~s~GN~g~alA~~ 88 (224)
...++ .+|||+++++++..+ +.+||+|+|++|||||||+|.+..++..+.++|. .++|+ +|+||||+|+|++
T Consensus 27 ~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~ 101 (365)
T cd06446 27 YKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATA 101 (365)
T ss_pred hhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHH
Confidence 33344 489999999998877 5799999999999999999999999999999886 44555 7999999999999
Q ss_pred HHHCCCeEEEEECCCCC---HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH-HHhC-CCeEEcCCCC----CCccHH
Q 027338 89 AAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEI-LAKT-PNAYMLQQFE----NPANPK 158 (224)
Q Consensus 89 a~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~~----~~~~~~ 158 (224)
|+.+|++|+||||...+ +.++++++.+||+|+.++.. ..+.++...+.+. .++. ...|+++++. ++.+++
T Consensus 102 a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 181 (365)
T cd06446 102 CALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVR 181 (365)
T ss_pred HHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHH
Confidence 99999999999998643 36788999999999999853 2345655444333 4432 2345444432 234568
Q ss_pred HHHHhHHHHHHhhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcCC
Q 027338 159 IHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218 (224)
Q Consensus 159 ~g~~t~~~Ei~~q~~----~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~~ 218 (224)
.|+.|+++||++|++ ..||+||+|+|+||+++|+++++++ .++++||+|||++++.+.+
T Consensus 182 ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~ 244 (365)
T cd06446 182 DFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETG 244 (365)
T ss_pred HhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccc
Confidence 899999999999995 3699999999999999999998877 5689999999999988864
No 71
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=281.75 Aligned_cols=205 Identities=41% Similarity=0.633 Sum_probs=183.3
Q ss_pred HhhhcccCCCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
+-+...+|+|||+++..|+...|++|+.|+|.+||.||.|||.|.++++.|++.|++.|| ..|++.++||+|.++|..|
T Consensus 41 ~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~ 119 (391)
T KOG1481|consen 41 SGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVA 119 (391)
T ss_pred chhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhh
Confidence 356788999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred HHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCC--ChH----HHHHHHHHHHHhCC--CeEEcCCCCCCccHHHHH
Q 027338 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK--GMK----GAVQKAEEILAKTP--NAYMLQQFENPANPKIHY 161 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~--~~~----~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~ 161 (224)
+.+|++|+|+||.+.+.+|.+.++.+||+|+.|++.. +-+ .+.+.+.++..+.. ..||.+||+|+.||..||
T Consensus 120 ~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 120 RALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHY 199 (391)
T ss_pred hhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHh
Confidence 9999999999999999999999999999999998642 112 23333444433321 236789999999999999
Q ss_pred HhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-cEEEEEcCCCCCC
Q 027338 162 ETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLYGIEPTESPV 215 (224)
Q Consensus 162 ~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~-~~vigve~~~~~~ 215 (224)
.++|+|||.|..+.+|++++.+|||||++|+.+++|+..+. +.++.++|-+|-.
T Consensus 200 etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGl 254 (391)
T KOG1481|consen 200 ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGL 254 (391)
T ss_pred cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCch
Confidence 99999999999999999999999999999999999998876 9999999999843
No 72
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=3e-41 Score=289.81 Aligned_cols=194 Identities=36% Similarity=0.499 Sum_probs=165.4
Q ss_pred hhcccCCCceeecc--ccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHH
Q 027338 12 VTELIGNTPLVYLN--NIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 12 ~~~~~~~TPl~~~~--~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 89 (224)
|+..+++|||++++ .++...+.+||+|+|++|||||||+|++.+++.++++++. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57899999999975 4455667899999999999999999999999999998865 7899999999999999999
Q ss_pred HHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh-------CCCeEEcCCCCCCccHHHHHH
Q 027338 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK-------TPNAYMLQQFENPANPKIHYE 162 (224)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+.+|++|++|+|.++++.++++++.+||+|+.++.+ +++..+.+++++++ .++. ++|+ ++.+...|+.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999999853 44444444443332 1122 6777 5555589999
Q ss_pred hHHHHHHhhhCCCCCE--EEEccCchhHHHHHHHHHHh--cCCCcEEEEEcCCCCCCcC
Q 027338 163 TTGPELWKGSGGRIDA--LVSGIGTGGTITGAGKFLKE--KNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 163 t~~~Ei~~q~~~~~d~--iv~pvGtGg~~aGi~~~~~~--~~~~~~vigve~~~~~~~~ 217 (224)
++++||++|+. .+|. ||+|+||||+++|++.+++. . |+++||+|+|.+++++.
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~ 207 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLY 207 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHH
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCcccc
Confidence 99999999996 6665 99999999999999999999 7 89999999999987764
No 73
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3.4e-41 Score=290.55 Aligned_cols=192 Identities=22% Similarity=0.247 Sum_probs=161.4
Q ss_pred CceeeccccccCC--CceEEEEeCCCCCC---CchhhhHHHHHHHHHHHcCCCCCCCcEEEee--cCCcHHHHHHHHHHH
Q 027338 19 TPLVYLNNIVNGC--VARIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAA 91 (224)
Q Consensus 19 TPl~~~~~l~~~~--~~~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--s~GN~g~alA~~a~~ 91 (224)
|||++++.++..+ +.+||+|+|++||+ ||||+|++.+++.++.++|. ++||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998776 57999999999998 57799999999999999887 778987 689999999999999
Q ss_pred CCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hHHHHHH-HHHHHHhCCCeEE-cCCCC-CCccHH
Q 027338 92 KQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAKG--MKGAVQK-AEEILAKTPNAYM-LQQFE-NPANPK 158 (224)
Q Consensus 92 ~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~V~~~~~~~~--~~~~~~~-a~~~~~~~~~~~~-~~~~~-~~~~~~ 158 (224)
+|++|++|||.+.+ ..|+++++.+||+|+.++.+.. ...+... ++++.++.+..|+ .+++. |+.+ .
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999876 4689999999999999986421 1222223 3334333323454 55654 8888 7
Q ss_pred HHHHhHHHHHHhhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 159 IHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 159 ~g~~t~~~Ei~~q~~~---~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
.|+.++++||++|++. .+|+||+|+|||||++|+++++++.+++++||+|||++++.+
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~ 215 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEK 215 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHH
Confidence 8999999999999954 699999999999999999999999999999999999998765
No 74
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4.8e-41 Score=293.03 Aligned_cols=207 Identities=18% Similarity=0.167 Sum_probs=171.0
Q ss_pred cchhHhhhcccCCCceeeccccccCCC--ceEEEEeCCCCCC---CchhhhHHHHHHHHHHHcCCCCCCCcEEEee--cC
Q 027338 6 SNIAKDVTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TS 78 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--s~ 78 (224)
+..++++...+++|||++++.++...| .+||+|+|++||+ ||||+|.+.+++.++.++|. .+|+++ |+
T Consensus 3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~ 77 (337)
T PRK12390 3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQ 77 (337)
T ss_pred CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCc
Confidence 445668888999999999999887777 6999999999987 78899999999999999997 778876 88
Q ss_pred CcHHHHHHHHHHHCCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCC-eEE
Q 027338 79 GNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPN-AYM 147 (224)
Q Consensus 79 GN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~ 147 (224)
||||+|+|++|+.+|++|++||+...+ ..++.+++.|||+|+.++.+. .+.++...+.+..++..+ .|.
T Consensus 78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (337)
T PRK12390 78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA 157 (337)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999999999877544 236778999999999999642 233566666666565334 444
Q ss_pred cCCCCCC-ccHHHHHHhHHHHHHhh---hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCcC
Q 027338 148 LQQFENP-ANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 217 (224)
Q Consensus 148 ~~~~~~~-~~~~~g~~t~~~Ei~~q---~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~~ 217 (224)
++.+.+. .....|+.++++||++| ++.++|+||+|+|||||++|++.++++.+|++|||+|||++++.+.
T Consensus 158 ~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~ 231 (337)
T PRK12390 158 IPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQT 231 (337)
T ss_pred eCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHH
Confidence 6555432 22256888889999998 4447999999999999999999999999999999999999987764
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=9.5e-41 Score=291.12 Aligned_cols=205 Identities=19% Similarity=0.179 Sum_probs=171.1
Q ss_pred cchhHhhhcccCCCceeeccccccCCC--ceEEEEeCCCCCC---CchhhhHHHHHHHHHHHcCCCCCCCcEEEee--cC
Q 027338 6 SNIAKDVTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TS 78 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--s~ 78 (224)
+..++++...+++|||++++.+++.+| .+||+|+|++||+ ||||+|.+.+++.+++++|. .+|+++ |+
T Consensus 2 ~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~ 76 (337)
T TIGR01274 2 LSRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQ 76 (337)
T ss_pred CCcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCc
Confidence 455678889999999999999998776 4999999999986 78899999999999999997 778876 77
Q ss_pred CcHHHHHHHHHHHCCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhC-CCeEE
Q 027338 79 GNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKT-PNAYM 147 (224)
Q Consensus 79 GN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~ 147 (224)
||||+|+|++|+.+|++|++|||...+ ..|+.+++.|||+|+.++... +..+....+.+..++. +..|+
T Consensus 77 gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (337)
T TIGR01274 77 SNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYP 156 (337)
T ss_pred chHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEE
Confidence 999999999999999999999998542 579999999999999998532 1234554555444444 34466
Q ss_pred cCCCCC--CccHHHHHHhHHHHHHhhh---CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 148 LQQFEN--PANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 148 ~~~~~~--~~~~~~g~~t~~~Ei~~q~---~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
++.+.+ +.. ..|+.++++||++|+ +.+||+||+|+|||||++|+++++++.+++++||+|||++++.+
T Consensus 157 i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~ 229 (337)
T TIGR01274 157 IPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQ 229 (337)
T ss_pred eCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 666533 444 568888899999995 34799999999999999999999999999999999999998765
No 76
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.1e-40 Score=289.71 Aligned_cols=201 Identities=21% Similarity=0.246 Sum_probs=168.0
Q ss_pred cchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCCC--CchhhhHHHHHHHHHHHcCCCCCCCcEEE--eecCCcH
Q 027338 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLI--EPTSGNT 81 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~s~GN~ 81 (224)
+..+++++...++|||++++.++...|++||+|+|++||+ ||||+|++.+++.++.++|. ++|| ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 4466899999999999999999877788999999999996 89999999999999999987 6677 5899999
Q ss_pred HHHHHHHHHHCCCeEEEEECCCCCHH-HHHHHHHcCCEEEEeCCCCC---hHHHHHHHHHHHHhCCCeEE-cCCCCCCcc
Q 027338 82 GIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDPAKG---MKGAVQKAEEILAKTPNAYM-LQQFENPAN 156 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~V~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 156 (224)
++|+|++|+.+|+++++|||...+.. +...++.+||+|+.++...+ ...+.+.++++.++.+..|+ .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999875433 55677999999999874322 23455666666665545565 566778888
Q ss_pred HHHHHHhHHHHHHhhhC---CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 157 PKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 157 ~~~g~~t~~~Ei~~q~~---~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
+ .|+.+...||++|++ .++|+||+|+|||||++|++++++..+|+++||+|+|.+
T Consensus 164 ~-~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 164 T-LGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred H-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 4 454444459999996 379999999999999999999999999999999999976
No 77
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=7.7e-41 Score=296.39 Aligned_cols=196 Identities=15% Similarity=0.041 Sum_probs=168.1
Q ss_pred hcccCCCceeeccccccCCCc-eEEEE-------eCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHH
Q 027338 13 TELIGNTPLVYLNNIVNGCVA-RIAAK-------LEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~~-~i~~K-------~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~a 84 (224)
+...+.|||++++.|++.+|. +||+| +|++|||||||||++.+++..+.++|. ++||++|+||||.|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999988887 99995 555899999999999999999999885 78999999999999
Q ss_pred HHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 027338 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (224)
Q Consensus 85 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (224)
+|++|+++|++|+||||.+.+..+...++.+|++|+.+++ +++++.+.+++++++. ++|..++++||.. +.|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHH
Confidence 9999999999999999998654334445899999999984 5889999999988775 6655566778876 8999999
Q ss_pred HHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcC-------CCcEEEEEcCCCCCCcC
Q 027338 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-------PNIKLYGIEPTESPVLS 217 (224)
Q Consensus 165 ~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~-------~~~~vigve~~~~~~~~ 217 (224)
++||+||++..||+||+|+|+|++..|++.+++++. .-+++++|||++++++.
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 999999996448999999999998999999888742 23788999999998875
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.9e-39 Score=297.73 Aligned_cols=196 Identities=22% Similarity=0.235 Sum_probs=161.5
Q ss_pred hcccC-CCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHH
Q 027338 13 TELIG-NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 13 ~~~~~-~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 91 (224)
..+.+ +|||+++++|++..|.+||+|+|++|||||||+|.+...+..+++.|+ ++.|+++|+||||.|+|++|++
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL 340 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence 45555 799999999998888999999999999999999999999999998886 2455578999999999999999
Q ss_pred CCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHHHhCCCeEEcCCCC---C--CccHHHHH
Q 027338 92 KQYRLIITMPASM---SLERRIILRAFGAELVLTDPA-KGMKGAVQKA-EEILAKTPNAYMLQQFE---N--PANPKIHY 161 (224)
Q Consensus 92 ~G~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g~ 161 (224)
+|++|+||||... +..++.+|+.+||+|+.++.. .++.++..++ +++.++.++.+|+.++. + |.+...|+
T Consensus 341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 9999999999864 356788999999999999853 3466664444 44534445666765432 2 33334589
Q ss_pred HhHHHHHHhhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCC
Q 027338 162 ETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (224)
Q Consensus 162 ~t~~~Ei~~q~~----~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~ 213 (224)
+|+|.||++|+. ..||+||+|+|+||+++|++.+|+. .++++||||||.++
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 999999999984 2599999999999999999999964 78999999999985
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=246.68 Aligned_cols=199 Identities=22% Similarity=0.199 Sum_probs=179.1
Q ss_pred hhhcccCCCceeeccccccCCCc---eEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHH
Q 027338 11 DVTELIGNTPLVYLNNIVNGCVA---RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~~---~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 87 (224)
..+...+.||+++.+++...++. ++|+|.|.+|||||||||++..++..+.+.|. .+|+++||||+|.|+|.
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 55778899999999888877663 59999999999999999999999999999884 57999999999999999
Q ss_pred HHHHCCCeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 027338 88 MAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 88 ~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (224)
++.+.|++|.|++|.+ .+..|+.+|..+|++++.++ ++++++.+.+++++++. ++++....-||.. +.|+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~--G~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVD--GNFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEc--CcHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence 9999999999999997 99999999999999999999 46899999999998865 5577777778887 889999999
Q ss_pred HHHhhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCC------cEEEEEcCCCCCCcCC
Q 027338 167 ELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPN------IKLYGIEPTESPVLSG 218 (224)
Q Consensus 167 Ei~~q~~-~~~d~iv~pvGtGg~~aGi~~~~~~~~~~------~~vigve~~~~~~~~~ 218 (224)
||++|++ ..||+|++|+|+||.+.|++.++++..|. ++..+||+++..++..
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~ 278 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVY 278 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhh
Confidence 9999997 47999999999999999999999988764 7889999998776653
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=8.9e-29 Score=207.10 Aligned_cols=195 Identities=22% Similarity=0.255 Sum_probs=160.8
Q ss_pred hcccC-CCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHH
Q 027338 13 TELIG-NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 13 ~~~~~-~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 91 (224)
..+.| +|||...++|++..|++||+|+|++|+||++|...+...+.-|++-|| ++.|.+...|.||.|.|.+|++
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~ 125 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAAL 125 (396)
T ss_pred HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHH
Confidence 34554 599999999999999999999999999999999999999999999998 5666678889999999999999
Q ss_pred CCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHH-HHHHHhCCCeEEcCCCC---C--CccHHHHH
Q 027338 92 KQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGMKGAVQKA-EEILAKTPNAYMLQQFE---N--PANPKIHY 161 (224)
Q Consensus 92 ~G~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g~ 161 (224)
+|++|+|||-... +..++-+|+.+||+|+.|.. +.++.++..+| +.+.......||+-... + |.....-+
T Consensus 126 fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ 205 (396)
T COG0133 126 FGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ 205 (396)
T ss_pred hCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHH
Confidence 9999999999743 44567789999999999985 45667776555 66777766777753332 1 22334468
Q ss_pred HhHHHHHHhhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 162 ETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 162 ~t~~~Ei~~q~----~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
+.+|.|.-+|+ +.-||+||.|||+|+.+.|+...|.. .+++++||||+.+
T Consensus 206 ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG 259 (396)
T COG0133 206 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAG 259 (396)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCc
Confidence 89999988775 34599999999999999999998864 4789999999987
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.96 E-value=8.4e-28 Score=200.52 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=170.2
Q ss_pred cccchhHhhhcccCCCceeeccccccCCCceEEEEeCCCCC--CCchhhhHHHHHHHHHHHcCCCCCCCcEEEee--cCC
Q 027338 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEP--CSSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSG 79 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--s~G 79 (224)
+.+..++|+.....+||+.++++++.++|++||+|+||+.+ .|.+|.|...+++.+|..+|. +++|++ ..+
T Consensus 1 ~~l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQS 75 (323)
T COG2515 1 MNLSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQS 75 (323)
T ss_pred CCcccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccch
Confidence 35678899999999999999999999999999999999965 489999999999999999987 889984 559
Q ss_pred cHHHHHHHHHHHCCCeEEEEECCCC----CHHHHHHHHHcCCEEEEeCCCCCh--HH-HHHHHHHHHHhCCCeEEcCCCC
Q 027338 80 NTGIGLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAELVLTDPAKGM--KG-AVQKAEEILAKTPNAYMLQQFE 152 (224)
Q Consensus 80 N~g~alA~~a~~~G~~~~ivvp~~~----~~~~~~~~~~~Ga~V~~~~~~~~~--~~-~~~~a~~~~~~~~~~~~~~~~~ 152 (224)
||.+++|++|+++|++|+.++.... ....+...+.+|+++..++...++ +. ....++++.++....|-++...
T Consensus 76 Nh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG 155 (323)
T COG2515 76 NHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGG 155 (323)
T ss_pred hHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCC
Confidence 9999999999999999999998865 122456668899999999976554 22 2333445555544455554444
Q ss_pred -CCccHHHHHHhHHHHHHhhhC--CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCC
Q 027338 153 -NPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 214 (224)
Q Consensus 153 -~~~~~~~g~~t~~~Ei~~q~~--~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~ 214 (224)
||.. ..||...+.||.+|.. -++|.||+++|||||.||++.++...+++.+|||+.....+
T Consensus 156 ~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~ 219 (323)
T COG2515 156 SSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADP 219 (323)
T ss_pred cCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCH
Confidence 5543 5689999999999986 57999999999999999999999999999999999887754
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.95 E-value=9e-27 Score=195.56 Aligned_cols=207 Identities=22% Similarity=0.252 Sum_probs=163.0
Q ss_pred hhHhhhcccCCCceeeccccccCCC--ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEe-ecCCcHHHH
Q 027338 8 IAKDVTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIG 84 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~s~GN~g~a 84 (224)
+.+.....-.+|||++..+|.+.++ ++||.|.|+..|+||||...|....-.++.+|. .+|++ ...|.+|.|
T Consensus 68 v~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsA 142 (432)
T COG1350 68 VREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSA 142 (432)
T ss_pred HHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHH
Confidence 3444555557999999999998776 799999999999999999999999999999997 55665 667999999
Q ss_pred HHHHHHHCCCeEEEEECCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hHHHHHHHHHHHHhCCCe
Q 027338 85 LAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAKG----------------MKGAVQKAEEILAKTPNA 145 (224)
Q Consensus 85 lA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~V~~~~~~~~----------------~~~~~~~a~~~~~~~~~~ 145 (224)
++++|+.+|++|+|||-+. ..+.++.+|+.|||+|+..++..+ +.=++..|.+.+-++++.
T Consensus 143 lslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~ 222 (432)
T COG1350 143 LSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENT 222 (432)
T ss_pred HHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCc
Confidence 9999999999999999874 356778899999999999885321 112556666666555444
Q ss_pred EEcCCCCCCccHHHHHHhHHHHHHhh---hCCCCCEEEEccCchhHHHHHHHHHHh---cCC-CcEEEEEcCCCCCCcCC
Q 027338 146 YMLQQFENPANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTITGAGKFLKE---KNP-NIKLYGIEPTESPVLSG 218 (224)
Q Consensus 146 ~~~~~~~~~~~~~~g~~t~~~Ei~~q---~~~~~d~iv~pvGtGg~~aGi~~~~~~---~~~-~~~vigve~~~~~~~~~ 218 (224)
.|....--. ..+.|+..+|.|..+| ++..||++|.|||+|+.++|+..-|-. .+. .+++|+|||+.+|.|..
T Consensus 223 kY~lGSVln-hvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~ 301 (432)
T COG1350 223 KYSLGSVLN-HVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTK 301 (432)
T ss_pred eecchhHHH-HHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCcccc
Confidence 443332211 2367999999999555 556799999999999999999887632 122 38999999999999987
Q ss_pred CC
Q 027338 219 GK 220 (224)
Q Consensus 219 ~~ 220 (224)
|.
T Consensus 302 Ge 303 (432)
T COG1350 302 GE 303 (432)
T ss_pred ce
Confidence 64
No 83
>PRK09225 threonine synthase; Validated
Probab=99.91 E-value=4.3e-23 Score=185.61 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=144.0
Q ss_pred CCceeeccccccCCCceEEEEeCCCCCCCchhhhHHHH---HHHHHHHcCCCCCCCcEEEeecCCcHHHHH-HHHHHHCC
Q 027338 18 NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQ 93 (224)
Q Consensus 18 ~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~s~GN~g~al-A~~a~~~G 93 (224)
.+||.++. .++|+.--+++||||||||++.. ++..+.+ ++ ..+|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887764 25888777789999999999988 7888877 42 3789999999999998 78888999
Q ss_pred CeEEEEECCC-CCHHHHHHHHHc-CCEE--EEeCCCCChHHHHHHHHHHHHhC-----CCeEEcCCCCCCccHHHHHHhH
Q 027338 94 YRLIITMPAS-MSLERRIILRAF-GAEL--VLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETT 164 (224)
Q Consensus 94 ~~~~ivvp~~-~~~~~~~~~~~~-Ga~V--~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 164 (224)
++++|++|.+ +++.++++|..+ |++| +.++ +++++|...++++.++. .+++-.+. .|+.. +.++.+.
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~--G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVE--GNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGR-LLAQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeC--CCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHH-HHHHHHH
Confidence 9999999985 999999999999 8977 6666 56899998888876541 14555555 36666 7899999
Q ss_pred HHHHHhhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEc
Q 027338 165 GPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (224)
Q Consensus 165 ~~Ei~~q~~~---~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve 209 (224)
++|+++|+.. .+|.|++|+|+||.+.|.+.+.+.-.|-.|+|+++
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~ 279 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT 279 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe
Confidence 9999999964 38999999999999999999944434556999997
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.91 E-value=1.4e-22 Score=182.38 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=146.0
Q ss_pred CceeeccccccCCCceEEEEeCCCCCCCchhhhHHHHH---HHHHHHcCCCCCCCcEEEeecCCcHHHH-HHHHHHHCCC
Q 027338 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSM---ISDAEAKGLITPGESVLIEPTSGNTGIG-LAFMAAAKQY 94 (224)
Q Consensus 19 TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~---~~~a~~~g~~~~g~~~vv~~s~GN~g~a-lA~~a~~~G~ 94 (224)
+||.++. .++|++-.+++||||||||++..+ +..+.++.. +..+|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 7777764 268999999999999999999976 666665411 2378999999999999 5888999999
Q ss_pred eEEEEECCC-CCHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHHHhC-----CCeEEcCCCCCCccHHHHHHhHH
Q 027338 95 RLIITMPAS-MSLERRIILRAFGA---ELVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTG 165 (224)
Q Consensus 95 ~~~ivvp~~-~~~~~~~~~~~~Ga---~V~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~ 165 (224)
+|+|++|.+ +++.++.+|..+|+ +++.+++ ++++|...++++.++. -+++-.+. .|+.. +.++.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHHH
Confidence 999999985 99999999999997 8999984 6899998888876542 13444444 36665 77999999
Q ss_pred HHHHhhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 166 PELWKGSGG----RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 166 ~Ei~~q~~~----~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
+|+++|+.. .+|.|++|+|+||.+.|++.+.+.-.|-.++|+++.+.
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 999999963 58999999999999999999976544667898875543
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.90 E-value=2.2e-23 Score=176.59 Aligned_cols=194 Identities=20% Similarity=0.210 Sum_probs=144.8
Q ss_pred cccCCCceeeccccccCC--CceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHH
Q 027338 14 ELIGNTPLVYLNNIVNGC--VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 14 ~~~~~TPl~~~~~l~~~~--~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 91 (224)
..-.+|||++.++|.+.+ |.+||+|+|++||+||+|...|...+..+++.|+ ++.|.+...|.||.|+|.+|++
T Consensus 118 y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~ 193 (477)
T KOG1395|consen 118 YLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAK 193 (477)
T ss_pred HcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHH
Confidence 445679999999998765 5899999999999999999999999999999998 5666678889999999999999
Q ss_pred CCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHHhCCCeEEcCCCC-CC----ccHHHHH
Q 027338 92 KQYRLIITMPASM---SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEE-ILAKTPNAYMLQQFE-NP----ANPKIHY 161 (224)
Q Consensus 92 ~G~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~-~~----~~~~~g~ 161 (224)
+|++|+|+|-... +..++-+||.+||+|+.+... ..+.++-..+-+ +.....--+|+-... .| .....-+
T Consensus 194 FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fh 273 (477)
T KOG1395|consen 194 FGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFH 273 (477)
T ss_pred hCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHH
Confidence 9999999998743 566788999999999999853 233333333322 222222233332221 11 1222345
Q ss_pred HhHHHHHHhhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 162 ETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 162 ~t~~~Ei~~q~----~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
++++-|-..|. +..||.||.|||+|+..+|+..-|.. ...++.|+||..+
T Consensus 274 svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaag 327 (477)
T KOG1395|consen 274 SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAG 327 (477)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecc
Confidence 67777766554 34599999999999999999998864 4458888888765
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.88 E-value=6.3e-22 Score=165.25 Aligned_cols=204 Identities=23% Similarity=0.268 Sum_probs=171.3
Q ss_pred hcccCCCceeecccccc--------CCCceEEEEeCCCCC-CCchhhhHHHHHHH-----HHHHcCCCCCC---------
Q 027338 13 TELIGNTPLVYLNNIVN--------GCVARIAAKLEMMEP-CSSVKDRIGYSMIS-----DAEAKGLITPG--------- 69 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~--------~~~~~i~~K~E~~~p-tGS~K~R~a~~~~~-----~a~~~g~~~~g--------- 69 (224)
+.++..+||+..+.+.+ ...-++|+|+++.-| +||+|.|+-.|-+. -|++.|.+...
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 45677789988776642 222489999999998 69999999888664 25566665433
Q ss_pred -------CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 027338 70 -------ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 142 (224)
Q Consensus 70 -------~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~ 142 (224)
+..+...|+||.|.++..+++.+|+++++.|+.++..+|.+.+|+.|.+|+..+ .+|..+.+.-++-++..
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe--~DY~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYE--QDYGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEec--chhhHHHHHhhhhhccC
Confidence 346778999999999999999999999999999999999999999999999999 46888888888888888
Q ss_pred CCeEEcCCCCCCccHHHHHHhHHHHHHhhhC--------CCCCEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEcCCCC
Q 027338 143 PNAYMLQQFENPANPKIHYETTGPELWKGSG--------GRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYGIEPTES 213 (224)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--------~~~d~iv~pvGtGg~~aGi~~~~~~~~-~~~~vigve~~~~ 213 (224)
|.+||++.-++- +...||...+..+-.|++ ..|-.|.+|||.||.-.|++.++|... .++.++-+||..|
T Consensus 231 P~c~FiDDE~S~-~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPths 309 (443)
T COG3048 231 PNCFFIDDENSR-TLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309 (443)
T ss_pred CceEEecccchh-hhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCC
Confidence 999999885544 447899999999988874 247799999999999999999999775 6799999999999
Q ss_pred CCcCCC
Q 027338 214 PVLSGG 219 (224)
Q Consensus 214 ~~~~~~ 219 (224)
|||.=|
T Consensus 310 PcMlLG 315 (443)
T COG3048 310 PCMLLG 315 (443)
T ss_pred hHHHHh
Confidence 998743
No 87
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.58 E-value=4.8 Score=33.65 Aligned_cols=52 Identities=27% Similarity=0.190 Sum_probs=38.7
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+..+|++.+|.-|.++|......|.+++++... ..+++.+...+.+++.+|-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 367888999999999999988889988776543 3445555556777776664
No 88
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.24 E-value=3.1 Score=30.33 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 82 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
|+..+..|+.+|.+++++.+ .+.|++.++.+|++.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhccccccccc
Confidence 45566667777744444432 45667777777766666554
No 89
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=91.22 E-value=2 Score=33.82 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=68.8
Q ss_pred HHHHHHHHHHCCCeEEEEEC-CCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 027338 82 GIGLAFMAAAKQYRLIITMP-ASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp-~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
|..+.++++.+|.++.--++ .+.-..-++.+...+-.|.+++++ .+.....+..+.++.|+.-.+.-++-+.+ .
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~-- 87 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-E-- 87 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-h--
Confidence 47889999999987732222 233455566778889999999964 34445556677777776544322221111 1
Q ss_pred HHhHHHHHHhhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEE
Q 027338 161 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 208 (224)
Q Consensus 161 ~~t~~~Ei~~q~~-~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigv 208 (224)
.--.+|++++. .++|.|+++.|+---= -.....+...+..-+++|
T Consensus 88 --~~~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 88 --EEEEAIINRINASGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV 133 (172)
T ss_pred --hhHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence 12234444442 3589999999987532 223333333444444444
No 90
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.79 E-value=2.2 Score=37.19 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=41.5
Q ss_pred CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 66 ~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+.+|.+.+|. ..|..|...+..++..|.+++++.+...++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3455455555 56999999999999999986666555557889999999999975
No 91
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.24 E-value=4.6 Score=35.09 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=41.6
Q ss_pred HHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+..+.+|.+.+|.+. |..|.+++.+++.+|.+++++ +.++.+++.++.+|++.+...
T Consensus 158 a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~~ 217 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLNP 217 (349)
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEecC
Confidence 334455677755444454 999999999999999964433 335567888888999765443
No 92
>PRK12743 oxidoreductase; Provisional
Probab=90.20 E-value=3.9 Score=33.68 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=38.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++++|.-|.++|......|.+++++...... ....+.++.+|.++..+.
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEE
Confidence 67888999999999999999999988776554332 222445666777766654
No 93
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=90.05 E-value=3.7 Score=32.25 Aligned_cols=121 Identities=17% Similarity=0.094 Sum_probs=69.0
Q ss_pred HHHHHHHHHHCCCeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 027338 82 GIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
|..+.++++.+|.+..--++.. .-..-++.+...+.+|.+++.+ .+.....++.+.++.|+.-.+...+.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 4688999999998733333321 2334456667779999999954 33444555667777777554432222222 111
Q ss_pred HHhHHHHHHhhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcC
Q 027338 161 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEP 210 (224)
Q Consensus 161 ~~t~~~Ei~~q~~-~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~ 210 (224)
-.+|++++. .++|.|+++.|+---= -.....+...+..-+++|=.
T Consensus 88 ----~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 88 ----EEEIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred ----HHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEece
Confidence 112455542 3599999999986532 23333444445555555543
No 94
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.73 E-value=3.9 Score=35.64 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=44.8
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
...+.+|.+.+|.+.+|.-|....-.|+.+|...++++. +..|.+.++.+||+.+....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~y~ 195 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVINYR 195 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEcCC
Confidence 466778878888899999999999999999984444332 23566689999998777643
No 95
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.70 E-value=1.9 Score=35.13 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=41.9
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+|+.|..++.+....+.+++++++.. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5788999999999999999999999998877 4456777888999998666
No 96
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.95 E-value=10 Score=36.15 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=42.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
..|+....|..|+.+|..-...|++++++ +.++.+++.++.+|.+|+.=|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 56899999999999999999999998876 34556788888889888777753
No 97
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.88 E-value=8.1 Score=32.78 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=43.6
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.+|.+.+|.+.+|..|.++...|+.+|.+++++. .+..+.+.++.+|++-+...
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 445677775666777789999999999999999855543 34567888888998655544
No 98
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.84 E-value=8.2 Score=31.71 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=44.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.++.-|.++|....+.|.+++++-... .+...+.++..|.++..+.-+ .+.++.....++..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999987764332 233344556677776554421 2333344444444333
No 99
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=88.75 E-value=10 Score=31.03 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=38.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|.+++++ .........+.++..+.++..+.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLT 63 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEE
Confidence 377899999999999999999999987765 33333444556666676666554
No 100
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.58 E-value=13 Score=34.67 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=40.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.+|+....|..|++.+.+|+.+|-.+++ + +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a-~--D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRA-F--DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEE-E--eCCHHHHHHHHHcCCeEEEec
Confidence 6788999999999999999999985333 2 456688999999999976665
No 101
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.55 E-value=7.9 Score=31.69 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=38.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|--|.++|..-.+.|.+++++..........+.++..|.+++.+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQ 61 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEE
Confidence 367888889999999999988899998777654333333455566676665554
No 102
>PRK08226 short chain dehydrogenase; Provisional
Probab=88.42 E-value=7.1 Score=32.09 Aligned_cols=54 Identities=19% Similarity=0.052 Sum_probs=35.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|.++|......|.+++++-+........+.+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 367888999999999999999899987666443221222333444566655443
No 103
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.21 E-value=8.7 Score=34.26 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=42.6
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.++..+.+|.+.+| ...|..|.+++..|+.+|.+.+++... .+.+++..+.+|++.+.
T Consensus 178 ~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 178 AVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCETVD 235 (393)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeEEe
Confidence 33455677745445 677999999999999999987664433 46788889999998543
No 104
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=87.93 E-value=6.7 Score=29.65 Aligned_cols=54 Identities=30% Similarity=0.284 Sum_probs=39.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC----HHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS----LERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~----~~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.++.-|+++|..-.+.|-..++++..+.. ...++.++..|.++..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc
Confidence 46888999999999999988887777776666522 2234556777888877764
No 105
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.85 E-value=4.9 Score=33.75 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.++....++.+ |+....|..|...+..++.+|.+.++++ +..+.|++.++.+|++.+..
T Consensus 113 l~~~~~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 171 (280)
T TIGR03366 113 LEAAGDLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALAE 171 (280)
T ss_pred HHhccCCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEecC
Confidence 33333446644 4544568899999999999999755555 44567888899999976543
No 106
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=87.74 E-value=20 Score=33.11 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCeEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCCC----ChHHHHHHHHHHHHhCCCeE--
Q 027338 84 GLAFMAAAKQYRLIITM-----------PASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAY-- 146 (224)
Q Consensus 84 alA~~a~~~G~~~~ivv-----------p~~~~~~~~~~~~~~Ga~V~~~~~~~----~~~~~~~~a~~~~~~~~~~~-- 146 (224)
-+..+|+..|+++++.. |+.+....+......|++.+.+..+. .-.++.+...+.+++-...+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 36778899999988865 44556677788888899999987532 12234333333332221111
Q ss_pred ---EcCCCC-CC--ccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 147 ---MLQQFE-NP--ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 147 ---~~~~~~-~~--~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
|-.... .. ..........+.++.+.+ +.+.||+..-||.++--+++ ..|.+.|+++.|..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~ 406 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNE 406 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCH
Confidence 111100 00 011122333444666666 47899999999999655554 58999999999875
No 107
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.65 E-value=14 Score=35.03 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=40.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+++....|..|+.+|..-...|++++++= .++.+++.++.+|.+++.=|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeC
Confidence 468889999999999999889999887763 335667777888888777664
No 108
>PRK08862 short chain dehydrogenase; Provisional
Probab=87.59 E-value=8.1 Score=31.48 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=43.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.++.-|.++|......|.+++++-..... ....+.++..|.+++.+.-+ .+.++......+..++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 367888888889999999999999987776433221 12234556667776654321 2333344444444443
No 109
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.11 E-value=16 Score=34.16 Aligned_cols=52 Identities=25% Similarity=0.142 Sum_probs=42.2
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
.+++....|+.|+.+|-.-+..|.+++++=. ++.+.+.++.+|.+++.-|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC
Confidence 5688899999999999999999999877632 346677778889888888754
No 110
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=86.90 E-value=4.3 Score=35.03 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=62.2
Q ss_pred eEEEEeCCCCC-----CCchhhhHHHHHHHHHHHcCCCCCCCcEEEe-ecCCcHHHHHHHHHHHCCCeEEEEECCCCCHH
Q 027338 34 RIAAKLEMMEP-----CSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 107 (224)
Q Consensus 34 ~i~~K~E~~~p-----tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~ 107 (224)
+-++|.++--| |-+.-=-.|+-|+.+-.+-. +| +.|+- ++.+--|+++--.|+.+|++.+-+++......
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~G-D~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KG-DSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CC-CeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 46777777443 33444446777888777644 45 44553 45556677888899999999999999876554
Q ss_pred -HHHHHHHcCCEEEEeCC
Q 027338 108 -RRIILRAFGAELVLTDP 124 (224)
Q Consensus 108 -~~~~~~~~Ga~V~~~~~ 124 (224)
..++++.+||+-++.+.
T Consensus 200 el~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHcCCceEecHH
Confidence 46678999999999884
No 111
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=86.81 E-value=2.1 Score=37.58 Aligned_cols=86 Identities=23% Similarity=0.224 Sum_probs=53.4
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHHhCCCeEEc
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEE-ILAKTPNAYML 148 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~ 148 (224)
..++..++|..+.-+|+.+..++=.-.|++|.-+.......+...|++++++|-+ .++.-..+..++ +..+....+.+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~ 120 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV 120 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe
Confidence 5688899999988888888444434788889988889999999999999999943 222211222222 33333344566
Q ss_pred CCCCCCcc
Q 027338 149 QQFENPAN 156 (224)
Q Consensus 149 ~~~~~~~~ 156 (224)
+.++++..
T Consensus 121 h~~G~~~d 128 (363)
T PF01041_consen 121 HLFGNPAD 128 (363)
T ss_dssp -GGGB---
T ss_pred cCCCCccc
Confidence 77777765
No 112
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.75 E-value=14 Score=29.87 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=37.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|+++|..-...|.+++++....... ...+.++..|.++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVK 60 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3678899999999999999999999877654433221 22344556676666654
No 113
>PRK07478 short chain dehydrogenase; Provisional
Probab=86.73 E-value=10 Score=31.04 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=36.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|..-...|.+++++...... ....+.++..|.++..+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALA 61 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 367888889999999999988899987776543211 112334555666665554
No 114
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.22 E-value=8.9 Score=32.90 Aligned_cols=59 Identities=27% Similarity=0.372 Sum_probs=43.2
Q ss_pred HHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+...+.++.+.+|.+.+|..|.+++..|+.+|.+++++.+. . +.+.++.+|++.+..
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~~ 227 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVIL 227 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEEe
Confidence 3455667777666667777999999999999999996655432 2 667778899875443
No 115
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=86.09 E-value=5.3 Score=31.95 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=40.6
Q ss_pred EEEe-ecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 027338 72 VLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 142 (224)
Q Consensus 72 ~vv~-~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~ 142 (224)
++++ .|||-+|.++|-.+...|..++++......+. -.+.+++.+.. ..+..+...+...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 4454 89999999999999999999999988743221 35788888884 456666666665544
No 116
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.08 E-value=12 Score=31.92 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=44.1
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+.+.+|.+.+|.+.+|.-|.+++..|+..|.+++++.+ +..+.+.++.+|++.+...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~~ 190 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFNY 190 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEec
Confidence 4566778756556676899999999999999998655433 4567888889999765543
No 117
>PRK08643 acetoin reductase; Validated
Probab=85.71 E-value=15 Score=30.03 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=35.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHH-HHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~V~~~~ 123 (224)
..+|++++|.-|.++|......|.+++++........ ....++..+.+++.+.
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 5688899999999999999889988766654322211 1233444566665544
No 118
>PRK05866 short chain dehydrogenase; Provisional
Probab=85.64 E-value=11 Score=31.93 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..+|++.+|.-|.++|......|.+++++...
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 67888999999999999988889988776554
No 119
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.35 E-value=6.6 Score=26.28 Aligned_cols=51 Identities=20% Similarity=0.088 Sum_probs=39.9
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-----H----HHHHHHHHcCCEEEEeC
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-----L----ERRIILRAFGAELVLTD 123 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-----~----~~~~~~~~~Ga~V~~~~ 123 (224)
++.-.+|..|.-+|.+.+.+|.+++++.+.... + .-.+.++..|.++++-.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 677889999999999999999999999886431 1 23456788888887643
No 120
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=85.17 E-value=11 Score=30.94 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=45.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.+|.-|.++|......|.+++++-.........+.+...|.++..+..+ .+.++.....++..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999998877654322223344555667776554421 2334444444444443
No 121
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=84.93 E-value=6.8 Score=33.87 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=43.6
Q ss_pred cCCCCCCCcEEEeecC---CcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Q 027338 63 KGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|.+. | .+|+-... +|.+.++..+++++|++++++.|... ++..++.++..|++|...+
T Consensus 145 ~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 45443 3 34444333 69999999999999999999999864 5555667777888887765
No 122
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=84.92 E-value=16 Score=31.43 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=43.3
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.++...+| ...|..|.+++..|+.+|...++++.. .+.+.+.++.+|++.+...
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~~ 226 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLNP 226 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEecC
Confidence 4566777744444 667999999999999999877666554 3567788888998765444
No 123
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.90 E-value=7.1 Score=34.16 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
++.+..+.||+..-|..-+| .|.---.+|+++|++++++-.. +..|.+.++.+||+......
T Consensus 173 pLk~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hhHHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 44444466986655566666 8877778899999999998433 44678899999999988774
No 124
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.70 E-value=13 Score=29.85 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHc--CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH-HHcCCEEEE
Q 027338 51 RIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVL 121 (224)
Q Consensus 51 R~a~~~~~~a~~~--g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~V~~ 121 (224)
++..+.+..+.+. +......++++.-..||.|..+|......|.+++++ +. ...+++.+ ..+|++.+.
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D~--~~~~~~~~~~~~g~~~v~ 77 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-DI--NEEAVARAAELFGATVVA 77 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-cC--CHHHHHHHHHHcCCEEEc
Confidence 5677777777665 222333366777788999999999999999988743 32 33444444 345776543
No 125
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=84.50 E-value=12 Score=29.78 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=57.3
Q ss_pred HHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEc--CCCCCCccHH
Q 027338 82 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML--QQFENPANPK 158 (224)
Q Consensus 82 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~ 158 (224)
|..+.++++.+|.+..--++. +.-..-.+.+...|..|.+++.. -......++.+.++.|+.-.+ ++|.++.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~--- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGAFGPLEPE--- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEECCCCChH---
Confidence 367899999998764322222 11233455556788999999964 344555667777777765433 3332221
Q ss_pred HHHHhHHHHHHhhhC-CCCCEEEEccCchh
Q 027338 159 IHYETTGPELWKGSG-GRIDALVSGIGTGG 187 (224)
Q Consensus 159 ~g~~t~~~Ei~~q~~-~~~d~iv~pvGtGg 187 (224)
--.+|++++. ..+|.++++.|+=-
T Consensus 88 -----~~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 88 -----ERKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred -----HHHHHHHHHHHcCCCEEEEEcCCcH
Confidence 1124555543 35899999999754
No 126
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.33 E-value=18 Score=31.02 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=42.9
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHH-cCCEEEEe
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~V~~~ 122 (224)
+.+.+.+|...+|.+.+|.-|.+++..|+.+|.++++.. ....+.+.++. +|++-+..
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~vi~ 203 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDAFN 203 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCceeEE
Confidence 345677886777777789999999999999999855543 33567787877 89865443
No 127
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=84.29 E-value=21 Score=29.18 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHH
Q 027338 53 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAV 132 (224)
Q Consensus 53 a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~ 132 (224)
+..+.....+-|. ...=|+.++--...++...++.+. +++|=.-+-.++...++....||+.+..+.-. .
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~--~--- 96 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN--P--- 96 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC--H---
Confidence 4445555555554 122245777788889999999998 66665444558889999999999999998532 2
Q ss_pred HHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH--------------hhhC-CCCCEEEEccCchhHHHHHHHHH
Q 027338 133 QKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW--------------KGSG-GRIDALVSGIGTGGTITGAGKFL 196 (224)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~--------------~q~~-~~~d~iv~pvGtGg~~aGi~~~~ 196 (224)
...+.+.+. +..+++...+|.- +.-.-..|.+++ ..+. +-++.-|+|+|+=+.- =+..++
T Consensus 97 -ev~~~a~~~-~ip~~PG~~TptE-i~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~-N~~~yl 171 (211)
T COG0800 97 -EVAKAANRY-GIPYIPGVATPTE-IMAALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLD-NAADYL 171 (211)
T ss_pred -HHHHHHHhC-CCcccCCCCCHHH-HHHHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCHH-HHHHHH
Confidence 233344444 7778877776653 222222333332 2222 3367888888865543 333344
No 128
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.97 E-value=21 Score=30.13 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=36.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.++|....+.|.+++++...... ....+.++..|.++..+.
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 67888999999999999998899988776554322 222344455566665543
No 129
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.00 E-value=18 Score=31.73 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=41.6
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.+|.+.+|. .+|..|..++..++.+|.+.++++. ..+.|++.++.+|++.+...
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~~ 243 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVNA 243 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeCC
Confidence 44557777555555 4688999999999999995444433 35577888889999655443
No 130
>PRK08703 short chain dehydrogenase; Provisional
Probab=82.96 E-value=20 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=26.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
++.+|++++|.-|.++|......|.+++++.+.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 367889999999999999988889887666443
No 131
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=82.92 E-value=28 Score=31.33 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=40.0
Q ss_pred eCCCCCCCchhhhHHHHHHHHHHHcCCCCCC-CcEEEeecCCcHHHH--HHHHHHHCCCeEEEEE
Q 027338 39 LEMMEPCSSVKDRIGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 100 (224)
Q Consensus 39 ~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~~vv~~s~GN~g~a--lA~~a~~~G~~~~ivv 100 (224)
+-+.+|.|.. +.....+...+++|.+..| +..||++.++..|.| +|.+. ..|..++++.
T Consensus 12 ~~~~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 12 CTTAHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred ECCCCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 3455677753 4566778888888887444 566777777777777 55566 6788877765
No 132
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.81 E-value=17 Score=31.58 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+.+.+.+|.+.+|. .+|--|.+++..|+.+|.+.++++.. ++.+++.++.+|++-+..
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i~ 227 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTVN 227 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEc
Confidence 345567777565555 46889999999999999874444433 456788888899865443
No 133
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=82.55 E-value=32 Score=29.93 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCCCCcEEEeec-CCcHHHHHHHHHHHCCCeEEEEECCCC-----------CH---HHH--HHH-HHc-
Q 027338 55 SMISDAEAKGLITPGESVLIEPT-SGNTGIGLAFMAAAKQYRLIITMPASM-----------SL---ERR--IIL-RAF- 115 (224)
Q Consensus 55 ~~~~~a~~~g~~~~g~~~vv~~s-~GN~g~alA~~a~~~G~~~~ivvp~~~-----------~~---~~~--~~~-~~~- 115 (224)
..+..+.+++. ..++... ..+......-.++..|+|++.+-.... .. ... +.+ +.+
T Consensus 71 ~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~ 145 (336)
T PRK15408 71 QLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVG 145 (336)
T ss_pred HHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 56666777775 4455533 333334444557777888888743210 00 011 111 223
Q ss_pred --CCEEEEeCCCCC---hHHHHHHHHH-HHHhCCCeEEcCC-CCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhH
Q 027338 116 --GAELVLTDPAKG---MKGAVQKAEE-ILAKTPNAYMLQQ-FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 188 (224)
Q Consensus 116 --Ga~V~~~~~~~~---~~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~ 188 (224)
+.+|..+..... ...+.+-.++ +.++.++.-.+.. +.+... ..++ ....++++.- +++|.||++ +...
T Consensus 146 ~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~-~~a~-~~~~~lL~~~-pdi~aI~~~--~~~~ 220 (336)
T PRK15408 146 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDA-TKSL-QTAEGILKAY-PDLDAIIAP--DANA 220 (336)
T ss_pred CCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcH-HHHH-HHHHHHHHHC-CCCcEEEEC--CCcc
Confidence 357766653221 1222222222 2234455544432 222221 2222 3445666664 689999987 3344
Q ss_pred HHHHHHHHHhcCC-CcEEEEEcC
Q 027338 189 ITGAGKFLKEKNP-NIKLYGIEP 210 (224)
Q Consensus 189 ~aGi~~~~~~~~~-~~~vigve~ 210 (224)
+.|++.++++.+. ++.|+|.+-
T Consensus 221 ~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 221 LPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC
Confidence 5588899988753 688888863
No 134
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=82.28 E-value=17 Score=32.54 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=69.2
Q ss_pred EEeecCCc-HHHHHHHHHHHCCCeEEEEECC-CCC----HHHHHHHHHcCC-EEEEeCCCCChH-HHHHHHHHHHHhCCC
Q 027338 73 LIEPTSGN-TGIGLAFMAAAKQYRLIITMPA-SMS----LERRIILRAFGA-ELVLTDPAKGMK-GAVQKAEEILAKTPN 144 (224)
Q Consensus 73 vv~~s~GN-~g~alA~~a~~~G~~~~ivvp~-~~~----~~~~~~~~~~Ga-~V~~~~~~~~~~-~~~~~a~~~~~~~~~ 144 (224)
|+.+|+|= +...+.|...+.+.+++.|.-. ..+ ....+....+|| +++.++-...+. +..-.+.+.-+.+.+
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg 80 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYEG 80 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BTT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhCC
Confidence 34566663 4455677777777998888654 222 233445688999 999999532221 111112221111223
Q ss_pred eEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEE-ccCchhHHHHHHHHHHhcCCCcEEEE
Q 027338 145 AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVS-GIGTGGTITGAGKFLKEKNPNIKLYG 207 (224)
Q Consensus 145 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~-pvGtGg~~aGi~~~~~~~~~~~~vig 207 (224)
.|++.. ....+ -......|++++. ..++|.. |.|.|--..=.-.+++.+.|+.+|++
T Consensus 81 ~YpL~t--sl~Rp--lIa~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 81 RYPLST--SLARP--LIAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp TB--CC--CCHHH--HHHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred Cccccc--cchHH--HHHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 333211 11111 2234445677776 4788988 56889988888889999999999875
No 135
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.26 E-value=17 Score=29.90 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=24.9
Q ss_pred cEEEeecC--CcHHHHHHHHHHHCCCeEEEEEC
Q 027338 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~s~--GN~g~alA~~a~~~G~~~~ivvp 101 (224)
..+|++.+ +.-|.++|....+.|.++++.-.
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 66777766 68999999999999998776643
No 136
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.24 E-value=22 Score=29.17 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=27.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+..+|++.++.-|.++|......|.+++++.+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 367889999999999999999999987766554
No 137
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.13 E-value=25 Score=30.62 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=42.5
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH-HcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~Ga~V~~~~ 123 (224)
+.+.+.+|.+.+|.+.+|.-|.++...|+.+|.+++++. .+..|.+.++ .+|++-+...
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~~ 211 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFNY 211 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEEC
Confidence 345677785666677779999999999999999755432 3456777776 7999765543
No 138
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.06 E-value=17 Score=29.79 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=45.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.+|.-|.++|..-...|.+++++......+...+.+...+.++..+..+ .+.++.....++..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 37788999999999999999999999888766522222334455566666554422 2233334444444443
No 139
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.92 E-value=27 Score=28.54 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=43.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
+..+|++.+|--|.++|..-...|.+++++.... ....+.++..+...+.++-. +.++..+...+..+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 75 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEK 75 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHH
Confidence 3678889999999999999888999877654433 23444555556666666643 23333333444433
No 140
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=81.92 E-value=8.5 Score=33.21 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=40.6
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.++..+.+|.+.+|.+ .|..|.+++..|+.+|.+++++. .++.|++.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~---~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMT---RGAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEe---CChHHHHHHHHhCCceec
Confidence 3445677885555555 58889988899999998744432 235678899999997654
No 141
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=81.91 E-value=35 Score=30.12 Aligned_cols=110 Identities=9% Similarity=0.030 Sum_probs=54.0
Q ss_pred CCCchhhhHHHHHHHHHHHcCC--CCCCCcEEEeecCCcHHHHHHHHHHH-C-CCeEEEEECCCCCHHHHHHHHHcCCEE
Q 027338 44 PCSSVKDRIGYSMISDAEAKGL--ITPGESVLIEPTSGNTGIGLAFMAAA-K-QYRLIITMPASMSLERRIILRAFGAEL 119 (224)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~s~GN~g~alA~~a~~-~-G~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+.|.-+.|.+....... ..|. +.+. ..|+..+++..+..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 34666666544432211 1242 3332 357766777776655544332 1 112345555544444456678899999
Q ss_pred EEeCCC--CChHHHHHHHHHHHHhCCCeEEcCCCCCCc
Q 027338 120 VLTDPA--KGMKGAVQKAEEILAKTPNAYMLQQFENPA 155 (224)
Q Consensus 120 ~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (224)
+.++-. .++.-..+..++...+....+|+...+||.
T Consensus 142 ~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPT 179 (396)
T PRK09147 142 YFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPT 179 (396)
T ss_pred EEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCc
Confidence 999742 112111112222222234566665445554
No 142
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.91 E-value=25 Score=30.27 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=41.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.++.+.+|.+ +|..|.+++..|+.+|++.++++. .+..+.+.++.+|++.+...
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~~ 224 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLDP 224 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEECC
Confidence 445566775555554 688999999999999995444443 35567777788898766544
No 143
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.83 E-value=17 Score=31.40 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=41.1
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.++....+|.+.+|. .+|..|++....++.+|.+.++++.. ++.+++.++.+|++.+...
T Consensus 162 l~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi~~ 221 (343)
T PRK09880 162 AHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLVNP 221 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEecC
Confidence 333334466455555 46999999999999999865554433 4578888899999765543
No 144
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.71 E-value=27 Score=29.83 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=40.1
Q ss_pred cCCCCCC--CcEEEeecCCcHHHHHHHHHHHCCC-eEEEEECCCCCHHHHHHHHH-cCCEEEEeCC
Q 027338 63 KGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLTDP 124 (224)
Q Consensus 63 ~g~~~~g--~~~vv~~s~GN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~-~Ga~V~~~~~ 124 (224)
.+.+.++ .+.+|.+.+|..|.++...|+.+|. +++++.+ ++.+.+.++. +|++-+....
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~~ 209 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINYK 209 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEECC
Confidence 3445554 4666667779999999999999998 5555433 3466777665 8987655443
No 145
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=81.30 E-value=11 Score=31.50 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccC
Q 027338 110 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 184 (224)
Q Consensus 110 ~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvG 184 (224)
+.|...||++.+.-.. +....+.++++++. +..++-+.|-.. ......+.-+|-++. +++|.+|.+++
T Consensus 26 k~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~--d~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 26 KALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTN--DESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCC--HHHHHHHHHHHHHhh-CcccEEEEEec
Confidence 4556677777777632 23455666666665 334444444332 234444444555554 46777777766
No 146
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.24 E-value=37 Score=29.75 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=43.4
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHH-cCCEEEEeCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~V~~~~~ 124 (224)
+|+....|.-|+..+..++.+|...++++ +..+.|++..+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 78999999999999999999999988888 556688888877 7888777764
No 147
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.17 E-value=20 Score=29.25 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=39.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++++|.-|.++|......|.+++++..... .....+.++..|.++..+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVA 62 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEE
Confidence 36789999999999999999999998777655432 2233455667788876655
No 148
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=81.04 E-value=37 Score=29.60 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=40.7
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+.+|.+.+|. .+|..|.+++..++.+|...++++.. .+.+++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 45667788555555 56999999999999999853444332 45778888889986444
No 149
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=81.01 E-value=15 Score=31.98 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHH-cCCEEEEeCCCCCh
Q 027338 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDPAKGM 128 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~V~~~~~~~~~ 128 (224)
.++-|..++|.+.||++.+|--|.-..-.|+..|.+++-+.. .++|.+.+.. +|-+...--+..++
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~idyk~~d~ 208 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGIDYKAEDF 208 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeeecCcccH
Confidence 345677778878888899999999999999999999888755 4577777776 77766665443333
No 150
>PRK06182 short chain dehydrogenase; Validated
Probab=80.99 E-value=28 Score=28.77 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=45.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
..+|++++|.-|.++|......|.+++++... ..+++.+...+.+++.+|-. +.++.....+++.+
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~ 70 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIA 70 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 67888999999999999998999988876543 34455555667888877753 33444444444433
No 151
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=80.41 E-value=10 Score=35.26 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=40.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+++.-..|..|++.+..++.+|..++++ +....+++..+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 46777778999999999999999874444 2244578888899999988873
No 152
>PRK06348 aspartate aminotransferase; Provisional
Probab=80.22 E-value=33 Score=30.16 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=46.5
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEEc
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYML 148 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~ 148 (224)
..|+..+++.++..++..+-. +-.-.|+++...-..-...++..|++++.++. ..++.-..+..++..++....+++
T Consensus 90 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 168 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIIL 168 (384)
T ss_pred hhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEE
Confidence 357777777777666655442 22235666665555566777888999998863 122211122222222333466776
Q ss_pred CCCCCCc
Q 027338 149 QQFENPA 155 (224)
Q Consensus 149 ~~~~~~~ 155 (224)
...+||.
T Consensus 169 ~~p~NPt 175 (384)
T PRK06348 169 NSPNNPT 175 (384)
T ss_pred eCCCCCC
Confidence 5555654
No 153
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.21 E-value=29 Score=27.94 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=27.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~ 103 (224)
+.+|++++|..|.+++......|.+++++....
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 678899999999999999888899977665543
No 154
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=80.20 E-value=24 Score=30.17 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=38.6
Q ss_pred CCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 65 ~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+.++.+.+|.+ +|..|.+++..|+.+|.+++++.+ ...+++.++.+|++-+..
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~ 213 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYID 213 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 466664555555 899999999999999998555433 345677778899865443
No 155
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.02 E-value=29 Score=29.69 Aligned_cols=58 Identities=24% Similarity=0.422 Sum_probs=40.7
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
...+.++...+| ..+|..|.+++..++..|++.++.+... +.+.+.++.+|++-+.-.
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~~~ 220 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIVAE 220 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEecC
Confidence 445666655555 5589999999999999999865555544 356777788998544433
No 156
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=80.01 E-value=42 Score=29.59 Aligned_cols=111 Identities=12% Similarity=0.037 Sum_probs=56.2
Q ss_pred CCCchhhhHHHHHHHHHHHcCC---CCCCCcEEEeecCCcHHHHHHHHHHH-CCCeEEEEECCCCCHHHHHHHHHcCCEE
Q 027338 44 PCSSVKDRIGYSMISDAEAKGL---ITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAEL 119 (224)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g~---~~~g~~~vv~~s~GN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+.|.-..|.+........ .|. +.+. ..|+..+++..+..++..+-. -|=..+|++|.-.-..-....+..|+++
T Consensus 63 ~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~ 140 (393)
T TIGR03538 63 TKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEP 140 (393)
T ss_pred CCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeE
Confidence 457666665544332221 121 3332 346767777777665554432 2433457777654444455678899999
Q ss_pred EEeCCC--CChHHHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 027338 120 VLTDPA--KGMKGAVQKAEEILAKTPNAYMLQQFENPAN 156 (224)
Q Consensus 120 ~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (224)
+.++-. .++.-..+..++...+....+|+...+||..
T Consensus 141 ~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG 179 (393)
T TIGR03538 141 YFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTG 179 (393)
T ss_pred EEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcC
Confidence 998742 1121111111111122346667655566543
No 157
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=79.92 E-value=23 Score=30.29 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=38.8
Q ss_pred CCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 65 ~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.++...+|.+.++..|.+++..|+.+|++++++.+. +.+.+.++.+|++-+.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 46666566667777789999999999999986665433 3556666778875444
No 158
>PRK07550 hypothetical protein; Provisional
Probab=79.65 E-value=42 Score=29.44 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=44.9
Q ss_pred CCchhhhHHHHHHHHHHHcC-CCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 45 CSSVKDRIGYSMISDAEAKG-LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g-~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|.-..|.+..-..... .| .+.+ ..|+..+++..+..++..+- .+-.-.|+++.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~~-~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSRL-YGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHHH-hCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 47666665544332221 22 2333 35676666677766555443 23345577776554555667788999999998
Q ss_pred C
Q 027338 124 P 124 (224)
Q Consensus 124 ~ 124 (224)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 159
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=79.48 E-value=15 Score=32.42 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 59 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+++++..+.|| +.|.....|-.|....-+|+.+|.+++++ +.++.|++..+.+||+.+....
T Consensus 157 ~alk~~~~~pG-~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPG-KWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCC-CEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 45556678888 55666666667777777888899887776 3466889999999999988864
No 160
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=79.36 E-value=36 Score=29.80 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=49.4
Q ss_pred cEEEeecCCcHHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh-HHHHHHHHHHHHhCCCeEE
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM-KGAVQKAEEILAKTPNAYM 147 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~--G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 147 (224)
.+++.+.+|-.|.-.|. +..+ |=++.++....-...-.+..+.||++|..++.+.+- .........+++..++.+|
T Consensus 69 ~tf~isgsGh~g~E~al-~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAAL-VNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred ceEEEecCCcchHHHHH-HhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEE
Confidence 56777777766655443 3333 334444444444566677788899998888743211 1123445566677778888
Q ss_pred cCCCCCC
Q 027338 148 LQQFENP 154 (224)
Q Consensus 148 ~~~~~~~ 154 (224)
+-+.+..
T Consensus 148 v~hgdsS 154 (385)
T KOG2862|consen 148 VTHGDSS 154 (385)
T ss_pred EEecCcc
Confidence 8776553
No 161
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.05 E-value=34 Score=28.01 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=25.5
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
+.+|++++|.-|.++|......|.++++.-+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 4688999999999999998888988666543
No 162
>PRK08589 short chain dehydrogenase; Validated
Probab=79.02 E-value=20 Score=29.76 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=44.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.++--|.++|..-...|.+++++-.........+.++..+.++..+..+ .+..+......++.++
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 36788899999999999998889998888765521222344555667665554321 1233334444444443
No 163
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=78.78 E-value=26 Score=29.53 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+.+|...+|...+|..|.+++..|+.+|.+.+++.+.. .+.+.++.+|++-+.
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~~~~ 189 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIGPVV 189 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCCEEE
Confidence 345567775655556779999999999999999876664433 344555556764443
No 164
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.72 E-value=39 Score=28.48 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=31.8
Q ss_pred HHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcC----CCcEEEEEcCC
Q 027338 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIEPT 211 (224)
Q Consensus 164 ~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~----~~~~vigve~~ 211 (224)
...+++++- +++|.|++. +...+.|+..++++.+ .++.|+|.+-.
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 444555553 568988863 5666779999999876 36889988744
No 165
>PRK05872 short chain dehydrogenase; Provisional
Probab=78.64 E-value=29 Score=29.34 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=26.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEE
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 100 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivv 100 (224)
+..+|++.+|.-|.++|......|.+++++-
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3678899999999999999999998766654
No 166
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.57 E-value=24 Score=30.96 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred HHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 58 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+|-+++.+.+| .+|+....|.-|...-.+|+.+|-+=++++ +..+.+++..+.+||+++.-..
T Consensus 159 ~HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 159 VHACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeecc
Confidence 357778888898 678889999999999999999998777764 4556889999999999988764
No 167
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=78.51 E-value=21 Score=30.15 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=35.8
Q ss_pred CCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 69 g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+.+|.+.+|..|.+++..|+.+|.++++..+. ..+.+.++.+|++-+..
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~~ 197 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKEVIP 197 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCEEEc
Confidence 3355566667999999999999999986554332 45667777888754433
No 168
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.35 E-value=25 Score=30.18 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=49.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHH-HHHHHcCC-E-EEE--eCCCCChHHHHHHHHHHHHhC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGA-E-LVL--TDPAKGMKGAVQKAEEILAKT 142 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~-~~~~~~Ga-~-V~~--~~~~~~~~~~~~~a~~~~~~~ 142 (224)
..|||++|+--|.++|+.-.+.|.+.++++.......++ +.++..+. + |+. +|- .+.+++.....+..++.
T Consensus 14 vVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dv-s~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 14 VVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDV-SDEESVKKFVEWAIRHF 89 (282)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCcc-CCHHHHHHHHHHHHHhc
Confidence 678888888889999999999999999999987776666 66655543 3 344 343 23455555554444444
No 169
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.16 E-value=32 Score=29.73 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=53.4
Q ss_pred CCcEEEeecCCcHHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHHHhCC
Q 027338 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP-ASMSLERRIILRAFG-AELVLTDPAKGMKGAVQKAEEILAKTP 143 (224)
Q Consensus 69 g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp-~~~~~~~~~~~~~~G-a~V~~~~~~~~~~~~~~~a~~~~~~~~ 143 (224)
|+..++|++++-.|+++|.--++.|-+.++.=- .....+..+.++..| ++-..|+-+ +.++....+++..++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 347788999999999999999999985544422 244566777777777 444556653 46788888888888763
No 170
>PRK05826 pyruvate kinase; Provisional
Probab=78.05 E-value=49 Score=30.50 Aligned_cols=124 Identities=11% Similarity=0.066 Sum_probs=73.7
Q ss_pred HHHHHHHHCCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCC----ChHHHHHHHHHHHHhCCCeEE-
Q 027338 84 GLAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAYM- 147 (224)
Q Consensus 84 alA~~a~~~G~~~~iv-----------vp~~~~~~~~~~~~~~Ga~V~~~~~~~----~~~~~~~~a~~~~~~~~~~~~- 147 (224)
-+...|++.|.++++- .|..+...-+...-..|++-+..+++. .-.++.+...+.+.+....++
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 4566789999998874 455555666777778899998888531 223444433333322211111
Q ss_pred ---cCCCCCC-ccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 148 ---LQQFENP-ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 148 ---~~~~~~~-~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
....... ..........+.++.++++ +.+.||+..-+|.++--++ ...|...|+++.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~is----k~RP~~pI~~~t~~~ 406 (465)
T PRK05826 343 NLSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLIS----RFRPGAPIFAVTRDE 406 (465)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHH----hhCCCCCEEEEcCCH
Confidence 0110000 0112233444557777762 2678999999999855544 467999999998875
No 171
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=78.02 E-value=29 Score=29.69 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=41.4
Q ss_pred HHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.++..+.+|.+.+|. ..|..|.+++..++.+|.+-++++. ..+.+++.++.+|++.+...
T Consensus 155 ~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~~ 215 (339)
T cd08239 155 ALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVINS 215 (339)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEcC
Confidence 3344456677565555 4688999999999999998333332 34567788888998655433
No 172
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.99 E-value=16 Score=31.66 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=46.1
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..||++.+|--|.++|......|.+++++...... ....+.++..|.+++.+..+ .+.++....+.+..++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 367888999999999999999999988777654221 22344566788888765532 2333333344444333
No 173
>PLN02740 Alcohol dehydrogenase-like
Probab=77.96 E-value=48 Score=29.13 Aligned_cols=57 Identities=23% Similarity=0.206 Sum_probs=40.4
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+.+|.+.+|. ..|.-|.+++..|+.+|.+-++++. ..+.+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 44567787554444 4699999999999999985344332 245678888999997544
No 174
>PRK12937 short chain dehydrogenase; Provisional
Probab=77.66 E-value=32 Score=27.60 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=40.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
+..+|++.+|.-|.++|..-...|.+++++...... ....+.++.++.++..+..
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 367889999999999999999999988776554322 2234456667888777653
No 175
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=77.59 E-value=17 Score=32.15 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=41.8
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
..+.++...+|.+.+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4466665666667779999999999999999865543 3456778888899876654
No 176
>PRK06197 short chain dehydrogenase; Provisional
Probab=77.43 E-value=32 Score=29.09 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=26.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..+|++++|--|.++|..-...|.+++++.+.
T Consensus 18 ~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 18 VAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888889999999999888889987776554
No 177
>PRK12828 short chain dehydrogenase; Provisional
Probab=77.19 E-value=31 Score=27.48 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=40.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
++.+|++++|.-|.++|....+.|.+++++.+.... ....+.+...+.+++.++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 377889999999999999988889997777654322 2234455667888888775
No 178
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=76.98 E-value=5.1 Score=30.82 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=31.9
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHc
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF 115 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~ 115 (224)
|..-.+||+|.|+|......|.+++++.++. ...+.++..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~ 41 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINET 41 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHh
Confidence 5667899999999999999999999997755 445555443
No 179
>PRK06720 hypothetical protein; Provisional
Probab=76.79 E-value=33 Score=26.71 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=40.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHH-HHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.++--|.++|......|.++++.-....... ..+.+...|.++..+.-+ .+..+......+..++
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6688888888999999988888988766543322111 124444566665444321 2233444444444333
No 180
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.70 E-value=16 Score=31.72 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=38.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+..||++.+|--|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 367888899999999999999999997776543221 223445677888876554
No 181
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.66 E-value=34 Score=29.27 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=25.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..||++.++--|.++|..-.+.|.+++++...
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888888999998888889887776553
No 182
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.64 E-value=31 Score=29.69 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=41.8
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. ++.+++.++.+|++-+.-
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i~ 211 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTFN 211 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEec
Confidence 344556677555555 57999999999999999986555433 456777788899865543
No 183
>PRK07832 short chain dehydrogenase; Provisional
Probab=76.02 E-value=43 Score=27.64 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
+.+|++++|.-|.++|......|.+++++.+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4588899999999999998888988666543
No 184
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=75.98 E-value=23 Score=30.84 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.+|...+|. .+|..|.+++..++.+|...++++.. .+.+++.++.+|++.+...
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i~~ 239 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFVNP 239 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEcc
Confidence 34556777555555 56999999999999999843344332 3467888899999755533
No 185
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=75.91 E-value=35 Score=28.99 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=36.9
Q ss_pred cEEEe-ecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~-~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.++. ..+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-+....
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~~ 196 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNSS 196 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEECC
Confidence 45554 67788999988999999997554432 45678888889997665543
No 186
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.91 E-value=13 Score=33.58 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=40.3
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+...+| ++|+....|.-|+.+|..++.+|.+++++ +..+.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 444566 67999999999999999999999975553 234556777777888664
No 187
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=75.90 E-value=6.5 Score=27.32 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
|.+++.-...|.+|+-...|..+--++-.++....++-|+.|+++++-.+
T Consensus 3 ~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vI 52 (84)
T PF11760_consen 3 DLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVI 52 (84)
T ss_dssp --HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEE
T ss_pred hHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEE
Confidence 34455546789999999999999999999998889999999999987554
No 188
>PRK07454 short chain dehydrogenase; Provisional
Probab=75.81 E-value=26 Score=28.21 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=42.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILA 140 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++++|..|.+++......|.+++++...... ....+.++..+.++..+..+ .+.++.....++..+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56888899999999999999999988777653221 12223345556666555432 233444344444433
No 189
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=75.77 E-value=22 Score=30.50 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=37.6
Q ss_pred CCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 68 ~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+|...+|. ..|..|.++...|+.+|.+.++++ +.++.+.+.++.+|++.+..
T Consensus 163 ~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~~ 214 (341)
T PRK05396 163 VGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAVN 214 (341)
T ss_pred CCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEec
Confidence 55455554 468899999999999999644444 34556778888899976543
No 190
>PLN00175 aminotransferase family protein; Provisional
Probab=75.64 E-value=50 Score=29.51 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=44.6
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhCCCeEEcCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKTPNAYMLQQ 150 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
.|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++-. .++.-..+..++........++++.
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecC
Confidence 4666666677666555543 3322345555544455566778899999998742 1111111222222222335677766
Q ss_pred CCCCc
Q 027338 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
.+||.
T Consensus 196 p~NPt 200 (413)
T PLN00175 196 PHNPT 200 (413)
T ss_pred CCCCC
Confidence 56664
No 191
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.59 E-value=31 Score=27.74 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=38.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++++|.-|.+++......|.+++++...... ....+.++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 367888999999999999988889987777654221 233445566676665554
No 192
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=75.56 E-value=20 Score=29.10 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=38.7
Q ss_pred cCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 027338 77 TSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 141 (224)
Q Consensus 77 s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++-. +.++......+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 45677888888888889887777555432 12334456788888777753 233333333443333
No 193
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.48 E-value=31 Score=27.87 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=38.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|.++|......|..++++.... .....+.++..+.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~ 58 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLT 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEE
Confidence 3678889999999999999999999877765432 2334455666776665554
No 194
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=75.29 E-value=54 Score=28.36 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=55.5
Q ss_pred CCCchhhhHHHHHHHHHHHcCC-CCCCCcEEEeecCCcHHHHHHHHHHHCCCe---EEEEECCCCCHHHHHHHHHcCCEE
Q 027338 44 PCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYR---LIITMPASMSLERRIILRAFGAEL 119 (224)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~G~~---~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
|.|.-..|.+..-... ...|. +.++ ..|+..+++..+.-++..+- .+-. -.|+++...-..-...++.+|+++
T Consensus 35 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~ 111 (350)
T TIGR03537 35 ALGTKALREAISGWFE-RRFGVKLDPD-AQVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEP 111 (350)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCCC-CcEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEE
Confidence 4566677754443321 12242 3332 24666666655554443322 2221 256666655556666778899999
Q ss_pred EEeCCC--CChHHHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 027338 120 VLTDPA--KGMKGAVQKAEEILAKTPNAYMLQQFENPAN 156 (224)
Q Consensus 120 ~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (224)
+.++-. .++.-..+..++..++....+++...+||..
T Consensus 112 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG 150 (350)
T TIGR03537 112 TAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTG 150 (350)
T ss_pred EEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcC
Confidence 998742 2221011222222223346677765566643
No 195
>PRK14030 glutamate dehydrogenase; Provisional
Probab=75.27 E-value=22 Score=32.52 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEE--------ECCCCCHHH
Q 027338 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT--------MPASMSLER 108 (224)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~iv--------vp~~~~~~~ 108 (224)
-|+..+.+..+.++..+.....+|+.-..||-|..+|.....+|.+++.+ -|...+..+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 46777777776554444444578999999999999999999999999994 444455555
No 196
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=75.25 E-value=49 Score=27.85 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=41.8
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+.++...+|...+|..|.+++..++.+|.+.+++. .+..+.+.++.+|++.+...
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~~ 192 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILIRY 192 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEec
Confidence 5566776666777789999999999999999876543 23456666777888654443
No 197
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=75.20 E-value=14 Score=28.63 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHHHCCCeEEEEECCC--CCH--HHH----HHHHHcCCEEEEeC
Q 027338 78 SGNTGIGLAFMAAAKQYRLIITMPAS--MSL--ERR----IILRAFGAELVLTD 123 (224)
Q Consensus 78 ~GN~g~alA~~a~~~G~~~~ivvp~~--~~~--~~~----~~~~~~Ga~V~~~~ 123 (224)
.+|.+.|++..+.++|+.++++.|.. .+. ..+ +.....|.+|..++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999987 444 233 33455689998886
No 198
>PRK05876 short chain dehydrogenase; Provisional
Probab=75.01 E-value=32 Score=28.70 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=43.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.+|.-|.++|..-...|.+++++..... .....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999998766543321 112234455667777655432 2333334444444333
No 199
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.91 E-value=45 Score=29.78 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=74.2
Q ss_pred EeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCC
Q 027338 38 KLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (224)
Q Consensus 38 K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (224)
|....+. |. +.+-....+.+- -|. +..+..++|-.+..+|+.+-..|=.-.|++|.-+...........||
T Consensus 26 ~sg~i~~-G~-~v~~FE~~~ae~--~G~-----k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga 96 (374)
T COG0399 26 KSGWLTG-GP-FVRRFEQAFAEY--LGV-----KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGA 96 (374)
T ss_pred HcCCeec-Ch-HHHHHHHHHHHH--hCC-----CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCC
Confidence 3344444 43 555555544332 343 66888899999888888865677777899999999999999999999
Q ss_pred EEEEeCCCC-ChHHHHHHHHH-HHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 027338 118 ELVLTDPAK-GMKGAVQKAEE-ILAKTPNAYMLQQFENPANPKIHYETTG 165 (224)
Q Consensus 118 ~V~~~~~~~-~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (224)
+.+++|-+. +++--.+..++ +....+....++-++++.+ +.....++
T Consensus 97 ~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~d-m~~i~~la 145 (374)
T COG0399 97 KPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCD-MDAIMALA 145 (374)
T ss_pred eEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCC-HHHHHHHH
Confidence 999999542 12211111222 2222335667788888776 44333333
No 200
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=74.78 E-value=28 Score=29.40 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=41.1
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+.+.+.++.+.+|. ..|..|.+++..|+.+|.+++++ . ..+.+.+.++.+|+.....
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~~~~ 205 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVETVLP 205 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcEEeC
Confidence 355667777555555 47899999999999999995443 2 2356777887889865443
No 201
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.75 E-value=45 Score=28.67 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+...+.++.+.+|. .+|..|.+++..|+.+|...++.+... +.+.+..+.+|++.+.
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~~v 216 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATDIV 216 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCceEe
Confidence 345566777555555 578999999999999999755554433 4667777888885443
No 202
>PRK06128 oxidoreductase; Provisional
Probab=74.60 E-value=48 Score=27.96 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=45.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILA 140 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
++.+|++.+|--|.++|..-.+.|.++++...... .....+.++..|.+++.+..+ .+.+...+...+..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 37889999999999999999999998877644321 123345667778777665432 223333444444433
No 203
>PRK08303 short chain dehydrogenase; Provisional
Probab=74.51 E-value=37 Score=29.01 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=44.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----------SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEE 137 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-----------~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~ 137 (224)
+..+|++.++--|.++|..-...|.+++++-.... .....+.++..|.+++.+..+ .+.++....+.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 36788888888999999999999998777654321 112334556677776655422 234444444555
Q ss_pred HHHh
Q 027338 138 ILAK 141 (224)
Q Consensus 138 ~~~~ 141 (224)
..++
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 5443
No 204
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=74.18 E-value=53 Score=27.76 Aligned_cols=57 Identities=26% Similarity=0.236 Sum_probs=40.4
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+.+|...+|....|..|.+++..|+.+|++++.+.+ ...+.+.++.+|++-+.
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQVI 190 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEE
Confidence 3456777755555567899999999999999998665543 34566666778875443
No 205
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=74.16 E-value=27 Score=29.45 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=38.2
Q ss_pred CCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 68 ~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
++...+|...+|..|.+++..|+.+|.+++++.. .+.+.+.++.+|++-++.
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~~ 197 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEIID 197 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEEE
Confidence 4445555666799999999999999998655543 446778888899855443
No 206
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.14 E-value=27 Score=27.99 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.1
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~ 103 (224)
++.+|++++|.-|.+++......|.+++++.+..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3678899999999999999999999988876643
No 207
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.10 E-value=37 Score=27.11 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=38.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++++|..|.+++....+.|.+++++...... ....+.++..+.++..+..
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 67889999999999999988889987676654332 2233445566778777753
No 208
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=74.08 E-value=30 Score=28.65 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=38.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|.+++++..... .+...+.++..|.++..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 36788899999999999999999998777655422 1223344556677776654
No 209
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=74.06 E-value=51 Score=27.48 Aligned_cols=59 Identities=29% Similarity=0.370 Sum_probs=39.7
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+...+.++...+|. .+|..|.+++..|+.+|++.++++.. .+.+.+.++.+|++-+..
T Consensus 122 ~~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~~~~~ 180 (312)
T cd08269 122 FRRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGATEVVT 180 (312)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCceEec
Confidence 335566777566666 46889999999999999983333333 245666778888854443
No 210
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.05 E-value=27 Score=28.46 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=37.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 377889999999999999999899987665433211 122344556677776654
No 211
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=73.95 E-value=59 Score=28.52 Aligned_cols=109 Identities=9% Similarity=0.020 Sum_probs=53.6
Q ss_pred CCchhhhHHHHHHHHHHHcCC-CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 45 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|....|.+...... ...|. +.++ ..|+..+++..+..++..+-. .-.=.|+++.-.-..-...++..|++++.++
T Consensus 68 ~G~~~lr~aia~~~~-~~~g~~~~~~-~~I~it~Gs~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 144 (388)
T PRK07366 68 HGTLDFREAAAQWYE-QRFGLAVDPE-TEVLPLIGSQEGTAHLPLAVL-NPGDFALLLDPGYPSHAGGVYLAGGQIYPMP 144 (388)
T ss_pred CCCHHHHHHHHHHHH-HhhCCcCCCc-CeEEECCCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcCCEEEEEE
Confidence 466566654332221 11232 3443 246666677776665544321 1112344454443444566788999999987
Q ss_pred CC--CChHHHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 027338 124 PA--KGMKGAVQKAEEILAKTPNAYMLQQFENPAN 156 (224)
Q Consensus 124 ~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (224)
-. .++..-.+...+........+++...+||..
T Consensus 145 ~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 145 LRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred CCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 42 1221111222222222346778776677754
No 212
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.83 E-value=30 Score=30.26 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=40.7
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+.+.+|.+.+|. .+|.-|.+.+..|+.+|...++.+ +..+.+++.++.+|++.+..
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i~ 236 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCVN 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEEc
Confidence 44567777555555 569999999999999998434433 33556788888899965443
No 213
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=73.69 E-value=17 Score=32.97 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=42.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC-----CCHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.||...+||.|.-+|..+.++|.+++++.+.. .....++.++..|.++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 578889999999999999999999999987653 23444567788899988654
No 214
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=73.57 E-value=29 Score=28.56 Aligned_cols=71 Identities=15% Similarity=0.026 Sum_probs=43.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILA 140 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+..+|++.+|.-|.++|......|.+++++-..... ....+.++..|.+++.+..+ .+..+......+..+
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 367889999999999999999999987766332211 12234455667777665432 233334444444433
No 215
>PRK08017 oxidoreductase; Provisional
Probab=73.54 E-value=41 Score=27.27 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=39.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|.-|.++|....+.|.+++++.+. ..+++.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 56888899999999999988889987665443 3455566667888887774
No 216
>PRK06194 hypothetical protein; Provisional
Probab=73.32 E-value=44 Score=27.76 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=37.4
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|.-|.++|......|.+++++-..... ....+.+...|.+++.+..
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 67899999999999999988899987766443211 2223444555777766653
No 217
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=73.32 E-value=54 Score=27.71 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=39.5
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+.+.++...+|. .+|..|.+++..|+.+|++++ ++.......+.+.++.+|++-+
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~~~ 214 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGADAV 214 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCccc
Confidence 3455666565665 478999999999999999854 3433344677788888998533
No 218
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.31 E-value=46 Score=29.94 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 027338 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (224)
Q Consensus 69 g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
++..+|++.+|.-|.++|....+.|.+++++-.........+.....+++++.++-. +.++......+..+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~ 280 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAE 280 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHH
Confidence 346788899999999999999999998777654333333334445678888888753 23333333444433
No 219
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.17 E-value=9.9 Score=35.64 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=41.9
Q ss_pred CCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC------------------CCHHHHHHHHHcCCEEEEe
Q 027338 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS------------------MSLERRIILRAFGAELVLT 122 (224)
Q Consensus 67 ~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~------------------~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+| +.|+...+|..|++.|+.+++.|.+++++=... ....+++.++.+|+++..-
T Consensus 135 ~~g-~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTG-KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 345 678889999999999999999999977763221 1245677788999987764
No 220
>PRK07806 short chain dehydrogenase; Provisional
Probab=73.12 E-value=48 Score=26.75 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=37.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|.+++......|.+++++...... ....+.++..+.++..+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 367889999999999999998899998877654321 111233455677666554
No 221
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=73.05 E-value=33 Score=29.41 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=38.0
Q ss_pred CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 66 ~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.++.+.+|.+ +|..|.+++..++.+|.+.++++ ..++.+.+.++.+|++.+.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 44565666654 68888999999999999855555 3466778888888986443
No 222
>PRK06114 short chain dehydrogenase; Provisional
Probab=72.81 E-value=47 Score=27.09 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=38.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|--|.++|..-...|.++++....... ....+.++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 367889999999999999999999988877654321 233455666676666554
No 223
>PRK07791 short chain dehydrogenase; Provisional
Probab=72.52 E-value=48 Score=27.84 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=44.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC---------C-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---------M-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEI 138 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~---------~-~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~ 138 (224)
+..+|++.++.-|.++|......|.+++++.... . .....+.++..|.++..+..+ .+.++.....++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999999877764322 1 112234455667776655422 2334444445555
Q ss_pred HHh
Q 027338 139 LAK 141 (224)
Q Consensus 139 ~~~ 141 (224)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 444
No 224
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=72.37 E-value=17 Score=31.97 Aligned_cols=55 Identities=33% Similarity=0.355 Sum_probs=41.1
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
..+.++...+|.+.+|..|.+++..++.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456665555666679999999999999999976543 355778888889986544
No 225
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.08 E-value=64 Score=27.82 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=36.7
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCC-eEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.++.+.+|. .+|..|.+++..|+.+|+ +++++. ..+.+.+.++.+|++-+.
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADATI 227 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeEE
Confidence 334466455555 469999999999999999 554442 245666777888885433
No 226
>PRK10083 putative oxidoreductase; Provisional
Probab=71.90 E-value=48 Score=28.23 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=41.5
Q ss_pred HHHcCCCCCCCcEEEeecCCcHHHHHHHHHHH-CCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+...+.+|.+.+|.+ .|-.|.+++..|+. +|.+.++.+.. .+.+.+.++.+|++-+..
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i~ 212 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVIN 212 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEec
Confidence 34456677775555545 78888888888886 59886666544 557788888899965543
No 227
>PRK05693 short chain dehydrogenase; Provisional
Probab=71.89 E-value=55 Score=26.98 Aligned_cols=64 Identities=30% Similarity=0.191 Sum_probs=43.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~ 138 (224)
..+|++.+|-.|.++|......|.+++++... ..+.+.+...+.+.+.++-. +.++..+...++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~ 66 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEEL 66 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHH
Confidence 56888999999999999999999988776543 23455556667777777753 233334444444
No 228
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=71.85 E-value=28 Score=30.44 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=40.3
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+...+.+|.+.+|. .+|..|.+++..++.+|.+.++++.. .+.|++.++.+|++.+..
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i~ 237 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCVN 237 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEEc
Confidence 34556777555555 56999999999999999953444322 346777888899975543
No 229
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=71.67 E-value=30 Score=30.33 Aligned_cols=85 Identities=9% Similarity=0.046 Sum_probs=47.8
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHH----hCCCeE
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA----KTPNAY 146 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~-~~~~~~~~a~~~~~----~~~~~~ 146 (224)
.|+..+++..+..++..+....-+-.|+++.-.-..-...++.+|++++.++.+. ++.-..+..++..+ .....+
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i 172 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVV 172 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEE
Confidence 4666677677766555544433222466676665666778899999999997421 11111112222212 234667
Q ss_pred EcCCCCCCcc
Q 027338 147 MLQQFENPAN 156 (224)
Q Consensus 147 ~~~~~~~~~~ 156 (224)
|+...+||..
T Consensus 173 ~l~~P~NPTG 182 (374)
T PRK02610 173 FVVHPNSPTG 182 (374)
T ss_pred EEeCCCCCCC
Confidence 7665567653
No 230
>PRK08912 hypothetical protein; Provisional
Probab=71.61 E-value=70 Score=28.05 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=43.5
Q ss_pred CCchhhhHHHHHHHHHHHcCC-CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 45 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|....|.+...... ...|. ..+. ..|+..+++..+..++..+.. +-.-.|+++...-..-...++.+|++++.++
T Consensus 63 ~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 139 (387)
T PRK08912 63 MGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVR 139 (387)
T ss_pred CCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEe
Confidence 466566654443221 11232 3332 257777777777765555442 2223455565554555667789999999887
Q ss_pred C
Q 027338 124 P 124 (224)
Q Consensus 124 ~ 124 (224)
-
T Consensus 140 ~ 140 (387)
T PRK08912 140 L 140 (387)
T ss_pred c
Confidence 4
No 231
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.58 E-value=34 Score=27.77 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=38.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|.++|......|.+++++...... ....+.++..+.++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367888999999999999999999987777554322 223445566777666554
No 232
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=71.22 E-value=52 Score=27.56 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=38.8
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.+.++...+|...+|..|.+++..|+.+|.+.+++.+.. .+.+.++.+|++-+.
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~~~ 188 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGADEVI 188 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCCEEe
Confidence 34456665555666778899999999999999876654433 455666677874433
No 233
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.12 E-value=40 Score=27.08 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=37.5
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|..|.+++......|.+++++...... ....+.++..+.+++.+.
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIAT 62 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 67888999999999999988899987776654321 122344566677776655
No 234
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=71.10 E-value=51 Score=28.57 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=41.7
Q ss_pred CCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHH----HHcCCEEEEeCC
Q 027338 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIIL----RAFGAELVLTDP 124 (224)
Q Consensus 69 g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~----~~~Ga~V~~~~~ 124 (224)
|.+-+..+-+.|.+.++-.+|+.+|+.+++..|+... +.-++.+ +..|++|..+..
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 3354556677999999999999999999999998653 3333333 445889998873
No 235
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.09 E-value=49 Score=28.37 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=35.2
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.++..-..|+.|++++..++.+|.+++++-+. ..+.+..+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 55666667999999999999999877666333 345666778888754
No 236
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.88 E-value=44 Score=27.16 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=33.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH-HHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~V~~~~ 123 (224)
+.+|++.+|..|.++|......|.+++++... +.+.+.+ ...+.++..+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 52 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQ 52 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEE
Confidence 45888999999999999999999987776543 2233322 33455555443
No 237
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.82 E-value=45 Score=26.99 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=43.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILA 140 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|.-|.++|..-...|.+++++...... ....+.++..+.++..+..+ .+..+..+...++.+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA 76 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56888999999999999988899988777644322 22344555567666665432 123333344444433
No 238
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.80 E-value=33 Score=29.08 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+...+.++.+.+| ...|..|.+++..++..|++++++.+.. .+.+.++.+|++-.
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~~ 215 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADWA 215 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcEE
Confidence 5566777755555 4578899999999999998776654443 56666677887543
No 239
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.58 E-value=40 Score=27.13 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=36.7
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|....+.|.+++++..... .....+.++..+.++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 36788899999999999999999998766633221 1122344555676666554
No 240
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.50 E-value=61 Score=26.93 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=39.8
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+.+|...+|...+|..|.+++..|+..|.+++.+.+. ..+.+.++.+|++-+..
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~~ 193 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVVI 193 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEEe
Confidence 345566566666777999999999999999996555333 35666667788855543
No 241
>PRK07890 short chain dehydrogenase; Provisional
Probab=70.32 E-value=40 Score=27.33 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=36.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++++|.-|.++|......|.+++++-..... +...+.++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 477899999999999999999999987776543211 122333444566655544
No 242
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=70.27 E-value=63 Score=28.50 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=46.0
Q ss_pred CCCchhhhHHHHHHHHHHHcCC--CCCCCc-EEEeecCCcHHHHHHHHHHH-CCCeEEEEECCCCCHHHHHHHHHcCCEE
Q 027338 44 PCSSVKDRIGYSMISDAEAKGL--ITPGES-VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAEL 119 (224)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g~--~~~g~~-~vv~~s~GN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+.|....|-+.... ....+. +.++ + .|+..+++..|..++..+-. ..=.-.|+++.-.-..-...++.+|+++
T Consensus 68 ~~G~~~lR~aia~~--~~~~~~~~~~~~-~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~ 144 (396)
T PRK09257 68 IEGLAAYRQAVQEL--LFGADSPALAAG-RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEV 144 (396)
T ss_pred CCCCHHHHHHHHHH--hcCCCCcccccC-eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcE
Confidence 45877777655433 222332 2343 3 13667777777777753332 1222356667666556677888999999
Q ss_pred EEeCC
Q 027338 120 VLTDP 124 (224)
Q Consensus 120 ~~~~~ 124 (224)
+.++-
T Consensus 145 v~v~~ 149 (396)
T PRK09257 145 KTYPY 149 (396)
T ss_pred EEEec
Confidence 99873
No 243
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=70.22 E-value=40 Score=27.17 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=38.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
+..+|++.+|--|.++|......|..++++...... +...+.++..|.++..+.-
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 367889999999999999888899987765443221 1223455667878876653
No 244
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=70.11 E-value=39 Score=26.38 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHC-CCeEEEEECCC----CCHHHHHHHHHcCCEEEEeCCC
Q 027338 56 MISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPAS----MSLERRIILRAFGAELVLTDPA 125 (224)
Q Consensus 56 ~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~-G~~~~ivvp~~----~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
++..+.+++. .--++.++.+....+.+...+.+ |++++...+.. .....++.++..+++++++.-.
T Consensus 40 l~~~~~~~~~----~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 40 LLRRAEQRGK----RIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred HHHHHHHcCC----eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECC
Confidence 3444555543 12333445566666666666666 77777655542 2344566778888888888743
No 245
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.09 E-value=69 Score=27.35 Aligned_cols=88 Identities=14% Similarity=-0.003 Sum_probs=49.4
Q ss_pred cCCCceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHH
Q 027338 29 NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER 108 (224)
Q Consensus 29 ~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~ 108 (224)
+..|..++--.|..+....+-.-.+...+..+.+.-.+....++++.-..|+.|.++|..++.+|.+++++-+. ..+
T Consensus 110 ~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~ 186 (287)
T TIGR02853 110 ADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SAD 186 (287)
T ss_pred HHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHH
Confidence 34455554222322323333334455555555543211222356777888999999999999999977665433 234
Q ss_pred HHHHHHcCCEE
Q 027338 109 RIILRAFGAEL 119 (224)
Q Consensus 109 ~~~~~~~Ga~V 119 (224)
......+|.+.
T Consensus 187 ~~~~~~~g~~~ 197 (287)
T TIGR02853 187 LARITEMGLIP 197 (287)
T ss_pred HHHHHHCCCee
Confidence 44455566553
No 246
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.73 E-value=43 Score=28.49 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=39.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+..||++.+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 36788999999999999998889998766543222 12334566778888877664
No 247
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=69.60 E-value=35 Score=29.10 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=37.5
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
..+.++...+|. ..|..|.+++..++.+|+..++++ ...+.+...++.+|+.++
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~ 216 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEPI 216 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeEE
Confidence 445566555555 578999999999999998434444 334566777788998653
No 248
>PRK08068 transaminase; Reviewed
Probab=69.45 E-value=78 Score=27.81 Aligned_cols=108 Identities=12% Similarity=-0.010 Sum_probs=53.1
Q ss_pred CCchhhhHHHHHHHHHHHcCC-CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 45 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|.-..|.+....... ..|. +.++ ..|+..+++..+..++..+ ..+-.-.|+++.-.-..-...++..|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~-~~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPE-TEVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-ccEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 4655566444433221 1232 3343 2466666666666554332 223334566666554445566788999999987
Q ss_pred CCC--ChHHHHHHHHHHHHhCCCeEEcCCCCCCc
Q 027338 124 PAK--GMKGAVQKAEEILAKTPNAYMLQQFENPA 155 (224)
Q Consensus 124 ~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (224)
-.. ++..-.+...+...+....+|+..-+||.
T Consensus 147 ~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPT 180 (389)
T PRK08068 147 LIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPT 180 (389)
T ss_pred cccccCCCCCHHHHHHhccccceEEEEECCCCCC
Confidence 421 22111112222222234666765335664
No 249
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=69.43 E-value=11 Score=29.08 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=37.6
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+|.+.+|+.|..++-.....|.+++++++....... ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 678899999999999999999999999988553333 56667666664
No 250
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=69.18 E-value=43 Score=28.17 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=38.7
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
..+.++.+.+|...+|..|.+++..++..|.+++++.+. ..+.+.++.+|++-
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 556677667777888999999999999999997766543 24455556666643
No 251
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=69.09 E-value=44 Score=26.64 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=37.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH-HHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|..|..++......|.+++++.+..... .....++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 678889999999999999888899976665543222 22444566787777754
No 252
>PRK08278 short chain dehydrogenase; Provisional
Probab=69.06 E-value=56 Score=27.11 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=38.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|--|.++|......|.+++++.+.... ....+.++..|.+++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 367888999999999999999999998887654321 112344566787776654
No 253
>PRK06181 short chain dehydrogenase; Provisional
Probab=68.98 E-value=39 Score=27.60 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=37.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.+++......|.+++++.+.... ....+.++..|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888999999999999988999988777654221 222334555677766554
No 254
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=68.95 E-value=61 Score=26.32 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=26.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..+|++.+|.-|.++|......|.+++++-..
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 67889999999999999988889987776543
No 255
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=68.91 E-value=42 Score=28.50 Aligned_cols=71 Identities=21% Similarity=0.241 Sum_probs=46.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHH--HHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER--RIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~--~~~~~~~Ga~V~~~~~~~-~~~~~~~~a~~~~~ 140 (224)
++.|||+.|+.-|.++|..-++.|.+++++.+....-.. .+.-+.+|.+|...+-+- +.++......++..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 477999999999999999999999999999887543222 222344666665554321 23344444444444
No 256
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=68.87 E-value=27 Score=31.80 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=36.8
Q ss_pred EEeecCCcHHHHHHHH-HHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Q 027338 73 LIEPTSGNTGIGLAFM-AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (224)
Q Consensus 73 vv~~s~GN~g~alA~~-a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
=+..++||+- ++-.. --..+-.-.|++.+-+-..-++.++++|++++.++.+
T Consensus 126 diiit~G~t~-~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md 178 (472)
T KOG0634|consen 126 DIIITNGNTD-GLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMD 178 (472)
T ss_pred eEEEecCCch-HHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEecccc
Confidence 3556677763 32222 2234555677888888889999999999999999853
No 257
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.83 E-value=41 Score=28.02 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=38.4
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+.+.++...+|.+.+|..|.+++..++..|.+++++.+. .+.+.++.+|++-+
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~~~ 191 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGADEV 191 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCCEe
Confidence 345566565666667999999999999999987666532 56667778887433
No 258
>PRK06179 short chain dehydrogenase; Provisional
Probab=68.83 E-value=46 Score=27.34 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=26.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..+|++.+|.-|.++|......|.+++++...
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57888999999999999988899987776554
No 259
>PRK06483 dihydromonapterin reductase; Provisional
Probab=68.82 E-value=59 Score=26.05 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=44.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|--|.++|......|.+++++-.... ...+.++..|++.+.+|-. +.++......+..+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHh
Confidence 6788999999999999998889998887654332 2345556678887777743 23333333444433
No 260
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=68.82 E-value=65 Score=26.53 Aligned_cols=58 Identities=31% Similarity=0.385 Sum_probs=40.8
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.+.+.++...+|...+|..|.+++..++.+|.+++++. ....+.+.++.+|++-+...
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~~ 188 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHVINY 188 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEEEeC
Confidence 45566775666666689999999999999999865543 24456666677887554433
No 261
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.65 E-value=43 Score=26.89 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=37.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|.++|......|.+++++.+... .....+.++..|.++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 36788888999999999999989998766544321 1223344566687776554
No 262
>PRK09134 short chain dehydrogenase; Provisional
Probab=68.59 E-value=61 Score=26.42 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=37.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|....+.|..++++...+... .-.+.++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3678999999999999999999999887765543221 12334445577776654
No 263
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=68.53 E-value=48 Score=29.15 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=39.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
..++..++|..+..++..+...+-.-.|++|..+-..-...++..|+++++++-+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4577778887776665544333333577888877777788889999999999843
No 264
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=68.46 E-value=42 Score=26.94 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC-CCHHHHHHHHHcCCE-EEEeCCCCChHHHHHHHHHHHHhCC
Q 027338 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAE-LVLTDPAKGMKGAVQKAEEILAKTP 143 (224)
Q Consensus 66 ~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~-V~~~~~~~~~~~~~~~a~~~~~~~~ 143 (224)
+.|| ..+++-..|.-+.++-++...-..+++.+=... ......+.++.||.+ |..+.++ ..++.. .+. .+
T Consensus 32 ~~~g-~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~--Ap~~L~---~~~--~~ 103 (187)
T COG2242 32 PRPG-DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD--APEALP---DLP--SP 103 (187)
T ss_pred CCCC-CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc--chHhhc---CCC--CC
Confidence 3455 678887777777777776333344555543322 223334456667754 3344422 122211 111 24
Q ss_pred CeEEcCCCCCCccHHHHHHhHHHHH-HhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 144 NAYMLQQFENPANPKIHYETTGPEL-WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~~t~~~Ei-~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
+..|+....+.. --+|. ++-+ ..-..+|+-+-+==+++-+...+++.+-. .|+-++-..+..+
T Consensus 104 daiFIGGg~~i~--------~ile~~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~l 167 (187)
T COG2242 104 DAIFIGGGGNIE--------EILEAAWERL-KPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPL 167 (187)
T ss_pred CEEEECCCCCHH--------HHHHHHHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceec
Confidence 666766542211 11122 2222 22355666666666666666666666554 5666655554444
No 265
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=68.44 E-value=67 Score=26.60 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=40.8
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.+.+.++...+|...+|..|.+++..++..|.+++++.+. ..+.+.++.+|++.+.
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIAI 189 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 345667777676777778999999999999999986655432 3445556777775444
No 266
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=68.21 E-value=55 Score=25.52 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHHHHHc
Q 027338 45 CSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---------SMSLERRIILRAF 115 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~---------~~~~~~~~~~~~~ 115 (224)
.--+-++.....+.+|.+-|. +.-||..|+|.+++-++-+... .+++++|.-. ..+++-.+.++..
T Consensus 8 G~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~er 82 (186)
T COG1751 8 GKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKER 82 (186)
T ss_pred cccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHc
Confidence 334567777888888988775 3445556778887766655544 3888877542 2356778889999
Q ss_pred CCEEEEeC
Q 027338 116 GAELVLTD 123 (224)
Q Consensus 116 Ga~V~~~~ 123 (224)
|++|..-+
T Consensus 83 Ga~v~~~s 90 (186)
T COG1751 83 GAKVLTQS 90 (186)
T ss_pred Cceeeeeh
Confidence 99998765
No 267
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=68.19 E-value=42 Score=27.06 Aligned_cols=53 Identities=8% Similarity=0.177 Sum_probs=38.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.++|......|.+++++...... ....+.++..|.+++...
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 56889999999999999999999987765543321 223455566788877544
No 268
>PLN02827 Alcohol dehydrogenase-like
Probab=68.07 E-value=51 Score=29.04 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=40.3
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+.+|.+.+|. ..|--|.+++..|+.+|.+.++++.. .+.|.+.++.+|++-+.
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 34557777555555 46889999999999999865554433 45678888889996543
No 269
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=67.91 E-value=36 Score=26.55 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=44.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC-----CCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
.-||++..|..|..+|..-...+-.-++++... .....++.++..|++|..+.-+ .+.++..+...++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 457888889999999988777666555555544 2345788889999999988643 2334444444444443
No 270
>PRK12744 short chain dehydrogenase; Provisional
Probab=67.85 E-value=55 Score=26.69 Aligned_cols=54 Identities=28% Similarity=0.148 Sum_probs=36.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-C----HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-S----LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-~----~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|..-...|.+++++..... . ....+.++..+.++..+.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 67 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQ 67 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEe
Confidence 36788899999999999998889999776654321 1 122344556677766554
No 271
>PRK06841 short chain dehydrogenase; Provisional
Probab=67.76 E-value=54 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=27.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+..+|++.+|--|.++|......|.+++++.+.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888999999999999999999987766544
No 272
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=67.57 E-value=85 Score=27.43 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=42.2
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--CChHHHHHHHHHHHHhCCCeEEcC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA--KGMKGAVQKAEEILAKTPNAYMLQ 149 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~ 149 (224)
.|+..+++..+..++..+- ..-.-.|+++...-..-....+..|++|+.++.. .++.--.+..++...+....+|+.
T Consensus 93 ~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~ 171 (383)
T TIGR03540 93 EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFIN 171 (383)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEe
Confidence 4665566666665554432 2222345555544444455678899999988742 122111112222212334677776
Q ss_pred CCCCCc
Q 027338 150 QFENPA 155 (224)
Q Consensus 150 ~~~~~~ 155 (224)
.-+||.
T Consensus 172 ~P~NPt 177 (383)
T TIGR03540 172 YPNNPT 177 (383)
T ss_pred CCCCCc
Confidence 335554
No 273
>CHL00194 ycf39 Ycf39; Provisional
Probab=67.56 E-value=24 Score=30.14 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=28.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+.+|++.+|.-|..++......|.+++++++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 45889999999999999988899999988865
No 274
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.27 E-value=48 Score=26.98 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=36.7
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|..-...|.+++++-..... ....+.++..|.++..+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVC 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 367889999999999999999999987666443211 122344555676766554
No 275
>PRK06138 short chain dehydrogenase; Provisional
Probab=67.12 E-value=65 Score=25.92 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=41.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILA 140 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|--|.++|..-...|.+++++...... ....+.++ .+.++..+..+ .+.+...+..+++.+
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67889999999999999888889887766544221 11222333 46666555432 233333444444433
No 276
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=67.11 E-value=48 Score=24.44 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=52.0
Q ss_pred HHHHHHHCCCeEEEEECCCCCHHHHHH-HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 027338 85 LAFMAAAKQYRLIITMPASMSLERRII-LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (224)
Q Consensus 85 lA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+...+..+.+..++..........+. ....+.+++.=.+ .++.+++..+.+...+......+-..|.|.... .
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~----~ 76 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP----D 76 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H----H
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH----H
Confidence 345566778888888877655544443 5566667766654 578888888866664433455666666776522 2
Q ss_pred HHHHHHhhhCCCCCEEEEccCchhH
Q 027338 164 TGPELWKGSGGRIDALVSGIGTGGT 188 (224)
Q Consensus 164 ~~~Ei~~q~~~~~d~iv~pvGtGg~ 188 (224)
.-.+.++.+ ...|.|+.|+--||.
T Consensus 77 ~l~~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 77 DLEQAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHHHHT-TT-SEEEEEBTTSSE
T ss_pred HHHHHHHHh-ccCCEEEeeccCCCE
Confidence 222344455 345999999999884
No 277
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=67.07 E-value=22 Score=29.18 Aligned_cols=47 Identities=30% Similarity=0.349 Sum_probs=33.7
Q ss_pred cEEEee-cCC---cHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCC
Q 027338 71 SVLIEP-TSG---NTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGA 117 (224)
Q Consensus 71 ~~vv~~-s~G---N~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga 117 (224)
+-+|++ |.| .+..|||.+|++-|=+.+.++|+... ..-.+.|..+|.
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 345544 554 36889999999999999999998654 344555655664
No 278
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=67.06 E-value=39 Score=28.55 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=30.1
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 100 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivv 100 (224)
+...+.++...+|...+|..|.+++..|+.+|.+++++.
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 345567775666666679999999999999999866653
No 279
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=67.06 E-value=76 Score=26.70 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=38.4
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHH-cCCEEEE
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~V~~ 121 (224)
.+.+.++...+|...+|..|.+++..++.+|.+++++.+ ...+.+.++. +|++-+.
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~ 196 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAI 196 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEE
Confidence 345666655566666799999999999999997655533 3345666665 7875433
No 280
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=67.05 E-value=47 Score=26.97 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=37.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++.+|.-|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 477888999999999999888899987777554221 222344555675555544
No 281
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.90 E-value=56 Score=26.39 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=38.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH-HHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|..|.++|..-...|.+++++....... ...+.++..+.+++.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3678899999999999999888899888876653322 22344555676765544
No 282
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=66.88 E-value=52 Score=26.70 Aligned_cols=54 Identities=20% Similarity=0.090 Sum_probs=36.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|....+.|.+++++-..... ....+.++..+.+++.+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 367899999999999999999999887765433211 122334455566665544
No 283
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=66.78 E-value=35 Score=27.90 Aligned_cols=54 Identities=15% Similarity=-0.048 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC
Q 027338 51 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (224)
Q Consensus 51 R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~ 104 (224)
|+..+.+..+.++-.......+|+.-..||-|+.+|......|.+.+.+.+.+-
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 456666666544332333347899999999999999999999999888877543
No 284
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=66.77 E-value=41 Score=32.15 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=41.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC--------------C----HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~V~~~~ 123 (224)
+.|+...+|..|++.|+..++.|.++++|-.... + ...++.++.+|.+++.-.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 6788899999999999999999999998854431 1 135677889999887644
No 285
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=66.72 E-value=87 Score=27.23 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.++...+|. .+|..|.+++..|+.+|.+.++.+.. .+.|.+.++.+|++.+...
T Consensus 180 ~~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~~ 238 (365)
T cd08278 180 NVLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVINP 238 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEecC
Confidence 34556677555555 56899999999999999975444433 3567777788888655443
No 286
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=66.58 E-value=72 Score=27.06 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=39.5
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHH-CCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.++.+.+|.+ +|..|.+++..++. .|.+++++.+ ++.+.+.++.+|++.+...
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~~ 214 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTINS 214 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEecc
Confidence 445567775666666 68899998888997 4987655433 3456777778888665443
No 287
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=66.54 E-value=77 Score=26.53 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=39.7
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+...+.++...+|...+|..|.+++..|+.+|.+++++.+ ...+.+.++.+|++-+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADVA 191 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 34455667756666677899999999999999998655432 2345566677887543
No 288
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=66.47 E-value=79 Score=26.65 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=39.7
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.++...+|.+.+|-.|.+++..++.+|.+++++.+ +..+.+.++.+|++-+.
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 189 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRPI 189 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceEE
Confidence 45667767777777899999999999999998655543 33455666778874443
No 289
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=66.46 E-value=37 Score=28.66 Aligned_cols=52 Identities=10% Similarity=-0.145 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
-|+..+.+..+.+.-.......+|+.-..||-|..+|.....+|.+++.+.+
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3577777777655444444447899999999999999999999999997766
No 290
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=66.28 E-value=67 Score=27.52 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=36.9
Q ss_pred CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 66 ~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.++ ..|+...+|..|.+++..++.+|.+.++++. ....+.+.++.+|++.+.-
T Consensus 173 ~~~~-~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~~ 226 (350)
T cd08240 173 LVAD-EPVVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVVVN 226 (350)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEEec
Confidence 3345 3445446799999999999999996555543 3456777778888864443
No 291
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=66.16 E-value=39 Score=30.28 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.7
Q ss_pred CCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 67 ~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
.|| .+|+..+.|.+|.-++-.++++|.+++++-.+
T Consensus 78 ~pg-dkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 78 EPG-DKVLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCC-CeEEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 344 55777777888888888888888877777665
No 292
>PRK06949 short chain dehydrogenase; Provisional
Probab=66.15 E-value=44 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=27.9
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
++.+|++.+|.-|.++|....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888999999999999999999987776554
No 293
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.11 E-value=83 Score=26.76 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=38.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+...+.++...+|. .+|..|.+++..|+.+|++++++.+ +..+.+.++.+|++-
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~~ 206 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGADD 206 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCCE
Confidence 44566777555555 5678899999999999998765533 356667777787643
No 294
>PRK12831 putative oxidoreductase; Provisional
Probab=66.06 E-value=32 Score=31.45 Aligned_cols=53 Identities=17% Similarity=0.050 Sum_probs=41.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC-----CCHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.|+...+||.|.-+|..+.++|.+++++.... .....++.++..|.++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 578899999999999999999999998887643 12344556777888887654
No 295
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.99 E-value=94 Score=27.38 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=82.2
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
....++.|| .+++...-|.-|+|++.-|+..|-.=+|=++ .++.|.+..+.+|+.=..-+
T Consensus 185 ~~~Akv~~G-stvAVfGLG~VGLav~~Gaka~GAsrIIgvD--iN~~Kf~~ak~fGaTe~iNp----------------- 244 (375)
T KOG0022|consen 185 WNTAKVEPG-STVAVFGLGGVGLAVAMGAKAAGASRIIGVD--INPDKFEKAKEFGATEFINP----------------- 244 (375)
T ss_pred hhhcccCCC-CEEEEEecchHHHHHHHhHHhcCcccEEEEe--cCHHHHHHHHhcCcceecCh-----------------
Confidence 334456777 7899999999999999999999976666443 45577777777776422222
Q ss_pred hCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCCCC
Q 027338 141 KTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 214 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~~~ 214 (224)
-+-.. .+-.-|.|..++.+|+-|=++|.=.++.-.....+.-+...-+|||.+.+..
T Consensus 245 ----------~d~~~-------~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 245 ----------KDLKK-------PIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ----------hhccc-------cHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 10000 1111133334467999999999999998888888888888999999998864
No 296
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=65.92 E-value=58 Score=26.28 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=37.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 46888999999999999999999987666543211 223345666787776654
No 297
>PRK07035 short chain dehydrogenase; Provisional
Probab=65.84 E-value=57 Score=26.38 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=36.5
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.+++....+.|.+++++-..... ....+.+...|.++..+.
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67889999999999999999999987777543221 122344455666655543
No 298
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.78 E-value=69 Score=25.75 Aligned_cols=54 Identities=31% Similarity=0.517 Sum_probs=36.6
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
..+.++.+.+|.+.++ .|.+++..++..|.+++++.+. +.+.+.++.+|++.+.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 183 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI 183 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec
Confidence 3345565656666666 9999999999999776665443 3556666777765544
No 299
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=65.31 E-value=78 Score=26.16 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.++...+|...+|..|.+++..++..|.++++..+. ..+.+.++.+|++-+.
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAVF 194 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEE
Confidence 556666566777778999999999999999886655442 3556666677875444
No 300
>PLN02702 L-idonate 5-dehydrogenase
Probab=65.21 E-value=65 Score=27.91 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=42.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+...+.++...+|. ..|..|.++...++.+|.+.++.++. ...+.+.++.+|++....
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~~ 232 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIVL 232 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEe
Confidence 44556677555555 57889999999999999986565544 467778888899876543
No 301
>PRK07069 short chain dehydrogenase; Validated
Probab=65.15 E-value=71 Score=25.66 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=24.4
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
.+|++.+|.-|.++|..-.+.|.+++++.+.
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888889999998888888877666544
No 302
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=65.14 E-value=50 Score=30.30 Aligned_cols=54 Identities=7% Similarity=-0.126 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC
Q 027338 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (224)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~ 103 (224)
-++..+.+..+.+.-.......+|+.-..||-|..+|.....+|.+++.+.+.+
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 357777777766544333334789999999999999999999999998776543
No 303
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=65.12 E-value=53 Score=28.70 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=39.3
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+...+.+|...+| ...|..|.+++..++.+|...++++. ....|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 4445667755555 56689999999999999985444433 3567788888899854
No 304
>PRK06836 aspartate aminotransferase; Provisional
Probab=65.11 E-value=86 Score=27.66 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=43.6
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHhCCCeEEcCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPNAYMLQQ 150 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
.|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++...+ +.--.+..++..++....+++..
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 176 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINS 176 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeC
Confidence 4666666666665554332 222234555654444455667889999999975322 11011222333233345666655
Q ss_pred CCCCc
Q 027338 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
..||.
T Consensus 177 p~NPt 181 (394)
T PRK06836 177 PNNPT 181 (394)
T ss_pred CCCCC
Confidence 55654
No 305
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=65.03 E-value=54 Score=26.34 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=37.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH-HHHHHHHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~ 124 (224)
+..+|++.+|.-|.++|..-...|.+++++....... ...+.++..+.++..+..
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 3678899999999999999999999877765543211 122334555666655543
No 306
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.01 E-value=50 Score=26.62 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=38.2
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++++|--|.+++......|.++++...... .....+.++..|.++..+.
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 6788899999999999998889998877654332 1233456677777766554
No 307
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=64.67 E-value=77 Score=25.86 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=38.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|..++++.+...+ ....+.++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 377889999999999999999999987776554322 223445566677766554
No 308
>PRK07326 short chain dehydrogenase; Provisional
Probab=64.56 E-value=71 Score=25.45 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=27.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
+..+|++.+|..|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 36788899999999999998888999777654
No 309
>PRK07814 short chain dehydrogenase; Provisional
Probab=64.40 E-value=57 Score=26.77 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=35.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEe
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 122 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~ 122 (224)
++.+|++++|--|.++|......|.+++++...... ....+.++..|.++..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~ 64 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVV 64 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 367889999999999999888899988776554211 12233344456555544
No 310
>PRK10537 voltage-gated potassium channel; Provisional
Probab=64.36 E-value=1.1e+02 Score=27.52 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=34.4
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+++....|+.|..++-.-+..|.+++++.++ +.+.....|.+++.-+.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d-----~~~~~~~~g~~vI~GD~ 289 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL-----GLEHRLPDDADLIPGDS 289 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc-----hhhhhccCCCcEEEeCC
Confidence 57888888999999888777788988888754 22333344666655554
No 311
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=64.28 E-value=60 Score=27.46 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
++..+.++.+.+|. ..|..|.+++..++.+|++++++.+ ...+++.++.+|++.+..
T Consensus 156 ~~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 156 RDAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred HhhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 33456676555665 4566999999999999998666543 345566677788765543
No 312
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=64.26 E-value=49 Score=28.37 Aligned_cols=52 Identities=27% Similarity=0.350 Sum_probs=37.8
Q ss_pred CCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 67 ~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.++...+|.+.+|..|.+++..++.+|++++... . ..+.+.++.+|++-+..
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~--~--~~~~~~~~~~g~~~v~~ 204 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA--S--PKNFDLVKSLGADAVFD 204 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE--C--cccHHHHHhcCCCEEEE
Confidence 4665666667779999999999999999876554 2 25677778889854433
No 313
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=64.26 E-value=49 Score=28.30 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=36.8
Q ss_pred CCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 67 ~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.++...+|.+ .|..|.+++..++.+|.+.++++ ..+..|.+..+.+|++-+.
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~ 213 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVI 213 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceee
Confidence 4554566654 68899999999999998544444 3455777777888885443
No 314
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=64.09 E-value=62 Score=27.53 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=37.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
..+.+.++.+.+|. .+|..|.++...|+.+|...++.+ ..+..+.+.++.+|++-+
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~v 216 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDI 216 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEE
Confidence 34556677565554 467888899999999997444444 334566677777876543
No 315
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.07 E-value=75 Score=26.12 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=37.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.++|..-...|.+++++...... +.....++..|.++..+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQR 55 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 45888999999999999988899998777654322 223344566676766554
No 316
>PRK07677 short chain dehydrogenase; Provisional
Probab=63.94 E-value=62 Score=26.24 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=35.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.++|......|..++++...... ....+.++..+.+++.+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 66889999999999999999999977666443221 122233444565665553
No 317
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=63.91 E-value=89 Score=27.15 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=38.7
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+...+.+|.+.+|. ..|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 44556777565555 57999999999999999875555432 45667777888874
No 318
>PRK12414 putative aminotransferase; Provisional
Probab=63.89 E-value=1e+02 Score=27.06 Aligned_cols=83 Identities=13% Similarity=0.042 Sum_probs=41.6
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCeEEcCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKTPNAYMLQQ 150 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
.++..+++..+..++..+- +.=.-.|+++...-..-...++.+|++++.++... ++.--.+..++..+.....+++..
T Consensus 92 ~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~ 170 (384)
T PRK12414 92 EVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNT 170 (384)
T ss_pred cEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcC
Confidence 4666677777666555433 22112344444333334555677899999987431 211011222222223345677765
Q ss_pred CCCCc
Q 027338 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
.+||.
T Consensus 171 p~NPT 175 (384)
T PRK12414 171 PHNPS 175 (384)
T ss_pred CCCCC
Confidence 55553
No 319
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=63.66 E-value=63 Score=26.29 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=37.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
+..+|++.+|.-|.++|..-...|.+++++...... +...+.++..+.++..+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 367889999999999999988899987666543211 1123344566777666553
No 320
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=63.62 E-value=75 Score=25.39 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=36.1
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
+|++.+|.-|.++|....+.|.+++++...... ....+.++..+.++..+.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 54 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQ 54 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 688889999999999999999997766544322 223445566677776655
No 321
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=63.38 E-value=83 Score=25.79 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=40.2
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+.+.+.++...++...+|..|.+++..++.+|++++++.+. ..+.+.++.+|++-+
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 169 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVPHV 169 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCEE
Confidence 345667777555665778899999999999999986655333 345666677887433
No 322
>PRK06953 short chain dehydrogenase; Provisional
Probab=63.28 E-value=74 Score=25.24 Aligned_cols=51 Identities=29% Similarity=0.287 Sum_probs=37.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|.-|.++|..-...|.+++++... ..+.+.++..+.+++.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 56888999999999999888889987776543 3345556666777776664
No 323
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=63.25 E-value=65 Score=27.26 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=35.9
Q ss_pred CCcEEEeecCCcHHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 69 GESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 69 g~~~vv~~s~GN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
|...+|...+|..|.+++..|+.+ |++++++.+. ..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 546666677889999999999988 9887665433 3566667778885544
No 324
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=62.73 E-value=74 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=27.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..+|++++|--|.++|......|.+++++...
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 67899999999999999999999987776443
No 325
>PRK06500 short chain dehydrogenase; Provisional
Probab=62.65 E-value=79 Score=25.34 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=35.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHH-HHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~-~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|.+++++... ..+. +..+..|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 367889999999999999999999987665432 2222 23345577765543
No 326
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=62.57 E-value=56 Score=28.25 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHH-HHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRII-LRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~-~~~~Ga~V~~~~ 123 (224)
+.|.+. |.+..+.+-.+|.+++++..++++|+++.++-|+.-. ...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 345543 3233334446899999999999999999999998642 233333 456787776654
No 327
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=62.57 E-value=67 Score=27.00 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=37.8
Q ss_pred CCCCC-cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 66 ITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 66 ~~~g~-~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.++. +.+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++-+..
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~~ 196 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVID 196 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEEc
Confidence 56665 55555667999999999999999986655433 34456667788754443
No 328
>PLN02342 ornithine carbamoyltransferase
Probab=62.50 E-value=49 Score=29.27 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=40.4
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHHcCC-EEEEeC
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGA-ELVLTD 123 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga-~V~~~~ 123 (224)
.|.+. |.+..+.+-..|.+.+++.+++++|++++++-|+.- +...++.++..|. ++...+
T Consensus 189 ~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 189 IGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred hCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 45543 323333444468999999999999999999999864 3445555666664 665554
No 329
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=62.41 E-value=61 Score=29.62 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=35.8
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCe-EEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVLTDPA 125 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
.|+..++... |+-..++.+-=+ -+|++..-+-..-+..++.+|++++.++.+
T Consensus 157 ~IiiT~G~q~--al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d 209 (459)
T COG1167 157 QIVITSGAQQ--ALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD 209 (459)
T ss_pred eEEEeCCHHH--HHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC
Confidence 4555555444 555666665433 566667777778899999999999999853
No 330
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=62.31 E-value=99 Score=26.36 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=36.9
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCE
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
...+.++.+.+|.+ .|..|.+++..++.+|++++++.+. ..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCCC
Confidence 44466665556666 7899999999999999987665333 4556666778873
No 331
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=62.31 E-value=56 Score=27.77 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=40.9
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-CHHHHHHHHHcCCEEEEeC
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+.++.+.+|...+|..|.+++..|+.+|.++++...... ...+.+.++.+|++-+...
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 202 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTE 202 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeC
Confidence 44566645555556799999999999999998777665332 1245666677888655443
No 332
>PRK08264 short chain dehydrogenase; Validated
Probab=62.02 E-value=44 Score=26.78 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=27.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCC-eEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~-~~~ivvp~ 102 (224)
..+|++.+|.-|.++|....+.|. +++++...
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 678889999999999999999998 77666544
No 333
>PRK07774 short chain dehydrogenase; Provisional
Probab=61.97 E-value=75 Score=25.56 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=36.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH-HHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~ 123 (224)
++.+|++++|--|.++|......|.+++++....... ...+.++..+.+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQ 61 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3678899999999999999999999887775542221 22233444555554443
No 334
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=61.90 E-value=55 Score=26.36 Aligned_cols=53 Identities=26% Similarity=0.277 Sum_probs=37.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.++|..-.+.|.++++....... ......++..+.+++.+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVA 58 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888999999999999998899987765543322 223445566777766654
No 335
>PRK08177 short chain dehydrogenase; Provisional
Probab=61.76 E-value=80 Score=25.11 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=40.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~ 138 (224)
..+|++.+|.-|.++|..-.+.|.+++++-........++.+ .+.++..++-+ +.++......++
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~D~~-d~~~~~~~~~~~ 67 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL--PGVHIEKLDMN-DPASLDQLLQRL 67 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc--cccceEEcCCC-CHHHHHHHHHHh
Confidence 468889999999999999889999887776554333333222 24455555532 333333334444
No 336
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=61.67 E-value=52 Score=29.99 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHC-CCeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Q 027338 79 GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 79 GN~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++.+++.+ |++++++.|+.- +...++.++..|..|...+
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 79999999997665 999999999864 3444556666777777655
No 337
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=61.66 E-value=55 Score=27.91 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=35.1
Q ss_pred CCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 69 g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
|.+.+|...+|..|.+++..|+.+|++++++... .+.+.++.+|++-+.
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~~ 211 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDVI 211 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceEE
Confidence 6455666668999999999999999986665432 256666777774433
No 338
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=61.59 E-value=81 Score=27.81 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=34.9
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.++..++|..|..+|..+-.++-.-.|++|...-......++..|+++++++-
T Consensus 50 ~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 50 HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 35556667666666555432222346777776666667778889999999974
No 339
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.37 E-value=85 Score=26.83 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=39.7
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+...+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. ...+.+.++.+|++-+..
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi~ 213 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTVN 213 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEec
Confidence 456777888666665 46778999999999999984444322 245566667778765443
No 340
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=61.28 E-value=83 Score=25.13 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=36.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.+++......|..++++...... ......++.+|.++..+.
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQ 57 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEE
Confidence 46888999999999999998999988776544322 122334566676665554
No 341
>PRK08265 short chain dehydrogenase; Provisional
Probab=61.18 E-value=90 Score=25.56 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=34.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|--|.++|......|.+++++-... ....+..+..+.++..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~ 58 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIA 58 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEE
Confidence 3678889999999999999999999877664332 112222334465555543
No 342
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=61.07 E-value=45 Score=27.89 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC-------CCCChHHHHHHHHHHHHhCCCeEEcCCCCCCcc-
Q 027338 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD-------PAKGMKGAVQKAEEILAKTPNAYMLQQFENPAN- 156 (224)
Q Consensus 85 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 156 (224)
++.+-++.|-++.+ ++.+.--..++.+- |.|=..+- +.-.+.++.-. -+..+..|+++...+-+.
T Consensus 23 ig~aLA~~GkKv~l-iD~DiGLRNLDlim--GlE~RiVYd~vdVi~g~~~l~QALIk----DKr~~nL~lLPAsQtrdKd 95 (272)
T COG2894 23 IGTALAQLGKKVVL-IDFDIGLRNLDLIM--GLENRIVYDLVDVIEGEATLNQALIK----DKRLENLFLLPASQTRDKD 95 (272)
T ss_pred HHHHHHHcCCeEEE-EecCcCchhhhhhh--cccceeeeeehhhhcCccchhhHhhc----cccCCceEecccccccCcc
Confidence 33333456766555 45566555566554 44433332 21122222211 122345565544332211
Q ss_pred --HHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhc--CCCcEEEEEcCCCCC
Q 027338 157 --PKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK--NPNIKLYGIEPTESP 214 (224)
Q Consensus 157 --~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~--~~~~~vigve~~~~~ 214 (224)
...+...+-.|+.+ ..+|||+|=+ -+||=.+|+.+ .-+-.+|.+.|+-|.
T Consensus 96 alt~E~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 96 ALTPEGVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred cCCHHHHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCccc
Confidence 13344444444333 4699999854 56677777643 346778888888664
No 343
>PRK05717 oxidoreductase; Validated
Probab=60.97 E-value=89 Score=25.37 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=34.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|..-...|.+++++-... ....+..+..+.+++.+.
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~ 62 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIA 62 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEE
Confidence 4678899999999999999999998877763321 111223344565555544
No 344
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=60.93 E-value=64 Score=27.40 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCCCCCcEEEeecCCcHHHHHHHHHHHCC-CeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 65 ~~~~g~~~vv~~s~GN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+.++.+.+|.+ .|..|.+++..|+.+| .+++++.+ ++.+.+.++.+|++-+..
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~~ 218 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHVLN 218 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEEEc
Confidence 345565556666 5669999999999999 67655433 345677778888754433
No 345
>PRK09135 pteridine reductase; Provisional
Probab=60.88 E-value=84 Score=25.08 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=28.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~ 103 (224)
+.+|++.+|.-|..++..-...|.+++++.+..
T Consensus 8 ~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~ 40 (249)
T PRK09135 8 VALITGGARRIGAAIARTLHAAGYRVAIHYHRS 40 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 678899999999999999888999888887653
No 346
>PRK09242 tropinone reductase; Provisional
Probab=60.81 E-value=89 Score=25.34 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=36.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHH-HHHHHHHc--CCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAF--GAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~--Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|.+++++........ ..+.++.. +.++..+.
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~ 66 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLA 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEE
Confidence 36788899999999999999999998777655422111 12233333 66776664
No 347
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=60.72 E-value=87 Score=25.55 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=40.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH-HHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.+|.-|.++|......|.+++++-.. ..+.+.+ +.++.++..+..+ .+.++......+..++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 367889999999999999999999987665433 2233333 3345444443321 2333444444444443
No 348
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=60.68 E-value=68 Score=25.82 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=36.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHH-HHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~-~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|-.|.+++......|.+++++........+ ...++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 56889999999999999988889987777655322222 223345566666554
No 349
>PRK06198 short chain dehydrogenase; Provisional
Probab=60.67 E-value=90 Score=25.31 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=36.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|..+|......|.+.++++...... .....++..+.++..+.
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 678888899999999999999999844444443221 22335566788876554
No 350
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=60.61 E-value=1.1e+02 Score=26.29 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=43.5
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
.+...+.||...+|-+..|--|..+.-.|+..|-.++.... ..+|.+..+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 45667888867777788899999999999999976666443 45788888889998
No 351
>PRK09291 short chain dehydrogenase; Provisional
Probab=60.48 E-value=39 Score=27.39 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=35.4
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHH-HHHHHHcCCEEEEe
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLT 122 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~-~~~~~~~Ga~V~~~ 122 (224)
..+|++.+|.-|.+++......|.+++++........+ .+.....+.++..+
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 56 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVE 56 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEE
Confidence 57899999999999999999999998887764322222 22334455444443
No 352
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=60.44 E-value=42 Score=25.95 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=40.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
..|+...+||-|...+.++..+|.+++++ +....+++..+..++..+.++
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEET
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEc
Confidence 46777889999999999999999987765 335667788889999988886
No 353
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=60.38 E-value=85 Score=27.11 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=50.0
Q ss_pred HHHHHHHHCCCeEEEEEC---CCC-CHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEcCCCCCC
Q 027338 84 GLAFMAAAKQYRLIITMP---ASM-SLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENP 154 (224)
Q Consensus 84 alA~~a~~~G~~~~ivvp---~~~-~~~----~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 154 (224)
++.|.++++|++.+.++. +.. ++. -++.++..+.+++++++..+- +.++.++++.+. ...++++...
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~----~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRP----AVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCh----HHHHHHHHhcCCeEEEecccccc
Confidence 889999999999876553 221 222 356678899999999975332 234444454432 3355666543
Q ss_pred ccH-HHHHHhHHHHHHhhh
Q 027338 155 ANP-KIHYETTGPELWKGS 172 (224)
Q Consensus 155 ~~~-~~g~~t~~~Ei~~q~ 172 (224)
... ...|..+..+.++++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 221 134555555555443
No 354
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=59.96 E-value=92 Score=26.05 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=35.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
..+|...+|..|.+++..|+.+|.+++++.+ ...+.+.++.+|++-+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 196 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVL 196 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 4556666799999999999999998544433 34667777888885443
No 355
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.94 E-value=73 Score=26.03 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=27.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+..+|++++|-.|.++|......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 367888999999999999999999987777654
No 356
>PRK06207 aspartate aminotransferase; Provisional
Probab=59.75 E-value=1.3e+02 Score=26.77 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=41.2
Q ss_pred CCchhhhHHHHHHHHHHHcCC-CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 45 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|....|.+..--... ..|. +.+. ..|+..+++..+..++..+- +.-.-.|+++...-..-...++.+|++++.++
T Consensus 78 ~G~~~LR~aia~~l~~-~~g~~~~~~-~~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~ 154 (405)
T PRK06207 78 RGDADIRELLAARLAA-FTGAPVDAA-DELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQ 154 (405)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-CCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHHHHHcCCEEEEEe
Confidence 4666666443322211 1232 3331 34666667677665554432 22223444454444455678889999999886
Q ss_pred C
Q 027338 124 P 124 (224)
Q Consensus 124 ~ 124 (224)
-
T Consensus 155 ~ 155 (405)
T PRK06207 155 L 155 (405)
T ss_pred c
Confidence 3
No 357
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.68 E-value=85 Score=25.02 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=35.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|..+|......|.+++++...+... ...+.++..+.++..+.
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVK 61 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 678889999999999998888899877763433221 22333444566666554
No 358
>PRK06482 short chain dehydrogenase; Provisional
Probab=59.52 E-value=70 Score=26.34 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=27.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+.+|++.+|.-|.++|..-...|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56889999999999999988899988887654
No 359
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=59.46 E-value=56 Score=28.73 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=34.7
Q ss_pred CcHHHHHHHH-HHHCCCeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Q 027338 79 GNTGIGLAFM-AAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 79 GN~g~alA~~-a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++.. ++.+|+.++++.|+.. +...++.++..|.++..++
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 7889999976 6677999999999864 4555666777787777665
No 360
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=59.43 E-value=68 Score=27.72 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=44.8
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEEcCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQQ 150 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 150 (224)
.|+..+++..+..++..+- ..-.-.|+++...-..-....+.+|++++.++-..++.-..+..++.. +.....+++..
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 4666666666655544332 122234566665555566778899999999975322111112222222 22446677764
Q ss_pred CCCCc
Q 027338 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
.+||.
T Consensus 162 p~NPt 166 (356)
T PRK04870 162 PNNPT 166 (356)
T ss_pred CCCCC
Confidence 45653
No 361
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.23 E-value=89 Score=24.81 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=37.4
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|..|.+++-.....|.+++++....... ...+.++..+.++..+.
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQ 62 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 678899999999999999999999887766654322 12333455566665554
No 362
>PRK07904 short chain dehydrogenase; Provisional
Probab=59.10 E-value=99 Score=25.31 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=40.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHC-CCeEEEEECCCCC--HHHHHHHHHcCC-EE--EEeCCCCChHHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMS--LERRIILRAFGA-EL--VLTDPAKGMKGAVQKAEEI 138 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~-G~~~~ivvp~~~~--~~~~~~~~~~Ga-~V--~~~~~~~~~~~~~~~a~~~ 138 (224)
+..+|++.+|-.|.++|....+. |.+++++...... ....+.++..|. ++ +.+|-. +..+..+..++.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~-~~~~~~~~~~~~ 82 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDAL-DTDSHPKVIDAA 82 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCC-ChHHHHHHHHHH
Confidence 36788888999999999887777 4888887654432 223445555553 44 445532 333333334433
No 363
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=59.07 E-value=81 Score=26.93 Aligned_cols=55 Identities=22% Similarity=0.431 Sum_probs=37.4
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCC-CeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
...+.++.+.+|. ..|..|.+++..++.+| .++++ +. ....+...++.+|++-+.
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~~~v 216 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGATHTV 216 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCCcee
Confidence 3445666566665 46999999999999999 55444 32 345667777888885433
No 364
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=59.01 E-value=57 Score=28.48 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=35.6
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+|.+ |+....|.-|.+++..|+.+|.+++++.... ..+.+..+.+|++.+.
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 33456644 5546679999999999999999865543332 2234455678886544
No 365
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.98 E-value=1e+02 Score=25.54 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=39.9
Q ss_pred CcEEEeecCC--cHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH-HHcCCE-EEEeCCCCChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAE-LVLTDPAKGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~G--N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~-V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
+..||++.++ .-|.++|....+.|.+++++-.......+++.+ +..|.. .+.+|-. +.++.....++..++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~-d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVE-DIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCC-CHHHHHHHHHHHHHH
Confidence 3667887775 789999999999999887764322222233333 344643 2334432 334444444444443
No 366
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.96 E-value=1e+02 Score=26.21 Aligned_cols=68 Identities=13% Similarity=0.032 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEeecC-CcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcC-CEEEEeC
Q 027338 51 RIGYSMISDAEAKGLITPGESVLIEPTS-GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG-AELVLTD 123 (224)
Q Consensus 51 R~a~~~~~~a~~~g~~~~g~~~vv~~s~-GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~G-a~V~~~~ 123 (224)
++....++++.+.|. .+|+..-- =.+...+-.+|+++|+..+.+++.+++..+++.+.... .-|..++
T Consensus 109 ~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 109 YGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred hhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 455556666766665 44444322 22444566677777777777777777777777666555 5555555
No 367
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=58.94 E-value=1.3e+02 Score=27.38 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHH----HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI----ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 147 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~----~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (224)
..+..++|-.+..++..+- ++=.-.|+++...-..... .+..+|++|.+++...+.++ + ++..++.....|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~-l---~~~I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADE-I---VALANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHH-H---HHhCCcCCeEEE
Confidence 3677888888888777654 3333456667654433333 36889999999985322222 2 222233346777
Q ss_pred cCCCCCCc
Q 027338 148 LQQFENPA 155 (224)
Q Consensus 148 ~~~~~~~~ 155 (224)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 77777776
No 368
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=58.83 E-value=1.1e+02 Score=25.76 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCC-chhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC-----CHHH
Q 027338 35 IAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----SLER 108 (224)
Q Consensus 35 i~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~-----~~~~ 108 (224)
|.+..|.-.-.| .|=.|. ..+.....++|. .-.+++-..++... -.-+..|+++..+ +... ....
T Consensus 2 i~ir~Da~~~iG~GHv~Rc-l~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRC-LTLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHH-HHHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 566666665555 455554 444444455664 23444444444322 2346788886665 4432 1235
Q ss_pred HHHHHHcCCEEEEeCC
Q 027338 109 RIILRAFGAELVLTDP 124 (224)
Q Consensus 109 ~~~~~~~Ga~V~~~~~ 124 (224)
.+.++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 6677888899999996
No 369
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=58.76 E-value=62 Score=28.29 Aligned_cols=83 Identities=12% Similarity=0.024 Sum_probs=42.5
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 151 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (224)
.|+..+++..+..++..+- +.=.-.|+++...-..-...++.+|++++.++...++.-..+...+..++....+++...
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCC
Confidence 4665666566555444332 122234555554444556777889999999875321110111222222333466776555
Q ss_pred CCCc
Q 027338 152 ENPA 155 (224)
Q Consensus 152 ~~~~ 155 (224)
+||.
T Consensus 169 ~NPt 172 (371)
T PRK05166 169 SNPV 172 (371)
T ss_pred CCCC
Confidence 5654
No 370
>PRK06290 aspartate aminotransferase; Provisional
Probab=58.60 E-value=1.4e+02 Score=26.75 Aligned_cols=52 Identities=8% Similarity=-0.017 Sum_probs=32.5
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|+..+++..+..++..+-. +-.-.|+++...-..-...++.+|++++.++-
T Consensus 108 ~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred eEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 47766776776655544332 22234555554444456677889999999974
No 371
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=58.50 E-value=86 Score=26.77 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 66 ~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.++.+.+|. ..|..|.+++..++.+|++++++.+. ..+.+.++.+|++-+.
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5666555664 47899999999999999976554332 3456666778876544
No 372
>PRK07985 oxidoreductase; Provisional
Probab=58.34 E-value=92 Score=26.25 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=36.2
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC---HHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.++|......|.+++++-..... ....+.++..|.+++.+.
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 77899999999999999999999988765432211 112233455677765544
No 373
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.26 E-value=1.1e+02 Score=25.60 Aligned_cols=56 Identities=27% Similarity=0.356 Sum_probs=38.1
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+.+.+|.. |+...+|..|.+++..|+..|.++++..+ ...+++.++.+|++.++.
T Consensus 155 ~~~~~~g~~-vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 210 (336)
T cd08276 155 LGPLKPGDT-VLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVIN 210 (336)
T ss_pred hcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEc
Confidence 345667744 44446788999999999999998655543 345666666677765543
No 374
>PRK07324 transaminase; Validated
Probab=58.26 E-value=54 Score=28.75 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=43.4
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--CChHHHHHHHHHHHHhCCCeEEcC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA--KGMKGAVQKAEEILAKTPNAYMLQ 149 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~ 149 (224)
.|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++-. .++.--.+...+........++++
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~ 160 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICIN 160 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEe
Confidence 4666666666666555543 2222334445444444456778899999998742 112101112222223334667776
Q ss_pred CCCCCc
Q 027338 150 QFENPA 155 (224)
Q Consensus 150 ~~~~~~ 155 (224)
..+||.
T Consensus 161 ~p~NPt 166 (373)
T PRK07324 161 NANNPT 166 (373)
T ss_pred CCCCCC
Confidence 556664
No 375
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=58.23 E-value=80 Score=27.67 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCE
Q 027338 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
...+.+.+|...+|. ..|.-|.+++..++.+|..-++++.. ...+++.++.+|++
T Consensus 183 ~~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 183 VNTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 345567777555555 67999999999999999943444432 44677777888984
No 376
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.17 E-value=65 Score=22.91 Aligned_cols=94 Identities=22% Similarity=0.145 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 027338 83 IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (224)
Q Consensus 83 ~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
..+|.+.++.|+++.++=.......-.+.++.+..+++.++. ..++....+.++...+..++...+-...
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~-------- 89 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP-------- 89 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES--------
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC--------
Confidence 346666777899888763333335556778888999988874 2334455555555444444433321111
Q ss_pred HHhHHHH-HHhhhCCCCCEEEEccCc
Q 027338 161 YETTGPE-LWKGSGGRIDALVSGIGT 185 (224)
Q Consensus 161 ~~t~~~E-i~~q~~~~~d~iv~pvGt 185 (224)
+.+..+| +++.. ..+|+++..=|-
T Consensus 90 ~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 90 HATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp SSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred chhcChHHHhccC-cCcceecCCChH
Confidence 2234443 45442 357888876554
No 377
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=58.16 E-value=98 Score=24.94 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=27.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+..+|++.+|.-|.++|......|..++++...
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 477889999999999999988889988776544
No 378
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.16 E-value=1.1e+02 Score=25.41 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=41.5
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+.+.++...+|.+..|..|.+++..++..|.++++..+ + .+.+.++.+|++-++-.
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~~~ 195 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPIIYY 195 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEEec
Confidence 4566777756666666899999999999999998766543 2 45666677887654443
No 379
>PRK06484 short chain dehydrogenase; Validated
Probab=58.15 E-value=1.1e+02 Score=27.84 Aligned_cols=32 Identities=28% Similarity=0.155 Sum_probs=25.5
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
+..+|++.+|.-|.++|..-...|.+++++-.
T Consensus 270 k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r 301 (520)
T PRK06484 270 RVVAITGGARGIGRAVADRFAAAGDRLLIIDR 301 (520)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888888999999888888987766543
No 380
>PRK06924 short chain dehydrogenase; Provisional
Probab=58.13 E-value=97 Score=24.93 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=39.5
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE--eCCCCChHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL--TDPAKGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~--~~~~~~~~~~~~~a~~~ 138 (224)
..+|++++|.-|.++|......|.+++++.... .+...+..+..+.+++. ++-. +.++.....++.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~ 70 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHSLDLQ-DVHELETNFNEI 70 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEEecCC-CHHHHHHHHHHH
Confidence 468889999999999999988999887765433 22222223334555544 4432 233444444444
No 381
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=58.10 E-value=1.2e+02 Score=26.05 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=16.9
Q ss_pred CCCEEEEccCchhHHHHHHHHHHh-cCCCcEEEEEcCC
Q 027338 175 RIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPT 211 (224)
Q Consensus 175 ~~d~iv~pvGtGg~~aGi~~~~~~-~~~~~~vigve~~ 211 (224)
++|. |+++|+|+.+ =++++... +.+...+|.|-..
T Consensus 78 ~~d~-IIaiGGGs~~-D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 78 EVDA-VIAVGGGSTL-DTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CcCE-EEEeCCchHH-HHHHHHHHHhcCCCCEEEEeCC
Confidence 3554 5667766643 33333322 2234566666554
No 382
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=58.09 E-value=27 Score=25.25 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=32.2
Q ss_pred HHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 164 ~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
.+.++.++++ ...||+..-+|.+ ++.+....|+..|+++.+..
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~t----a~~isk~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRT----ARLISKYRPKVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHH----HHHHHHT-TSSEEEEEESSH
T ss_pred HHHHHHHhcC--CCEEEEECCCchH----HHHHHhhCCCCeEEEEcCcH
Confidence 3457777773 7899999999998 45555678999999998875
No 383
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=58.02 E-value=67 Score=29.11 Aligned_cols=53 Identities=19% Similarity=0.081 Sum_probs=40.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCC-eEEEEECCC-----CCHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPAS-----MSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~-~~~ivvp~~-----~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.|+...+||.|.-+|....++|. +++++.+.. ......+.++..|.++++-.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~ 332 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLA 332 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecC
Confidence 568888899999999999999998 788886542 13455677788999987643
No 384
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=57.99 E-value=89 Score=27.64 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=36.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
..++..++|..+..++..+...+=.-.|+++..+-......+...|+++++++-+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4567677776665555444322223457777776666677778899999999853
No 385
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=57.93 E-value=72 Score=27.62 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=42.1
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEEcCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQQ 150 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 150 (224)
.|+..+++..+..++..+- ++-.-.|+++...-..-....+..|++++.++.+.++.-..+...+.. .......++..
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~ 156 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCN 156 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeC
Confidence 4666666556555544432 222234455554434555667889999999975322110011122222 22346677655
Q ss_pred CCCCc
Q 027338 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
..||.
T Consensus 157 p~NPt 161 (351)
T PRK14807 157 PNNPT 161 (351)
T ss_pred CCCCC
Confidence 55554
No 386
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.85 E-value=86 Score=25.46 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=36.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|.+++++.+.... +...+.++..|.++..+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 377888999999999999988999987776543221 112334455676665543
No 387
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=57.68 E-value=38 Score=29.87 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 67 ~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+| ++|+....|.-|.+++..|+.+|.+++++.+. +..+.+.++.+|++.+.
T Consensus 177 ~~g-~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESG-KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCC-CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 356 44555556899999999999999985554332 23345666788886543
No 388
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=57.49 E-value=83 Score=26.55 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=62.4
Q ss_pred EEeecCCcHHHHHHHHHHHCC-CeEEEEECC----CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQ-YRLIITMPA----SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 147 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G-~~~~ivvp~----~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (224)
++.+.-|....+.+...+++. +++...-.. ...+..++.+...+++|++|.-..--++. ...+.....+...+
T Consensus 113 llGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~VgmG~P~QE~--wi~~~~~~~~~~v~ 190 (253)
T COG1922 113 LLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVGMGVPRQEI--WIARNRQQLPVAVA 190 (253)
T ss_pred EecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEeCCCchhHH--HHHHhHHhcCCceE
Confidence 334566888888888888775 666665533 22235678899999999999954322333 33333344445666
Q ss_pred cCCCCCCccHHHHHHhHHHHHHhhhC
Q 027338 148 LQQFENPANPKIHYETTGPELWKGSG 173 (224)
Q Consensus 148 ~~~~~~~~~~~~g~~t~~~Ei~~q~~ 173 (224)
+.-....+. ..|...-|+++++.++
T Consensus 191 igVGg~fDv-~sG~vkRAP~w~~~l~ 215 (253)
T COG1922 191 IGVGGSFDV-FSGRVKRAPRWMQKLG 215 (253)
T ss_pred EeccceEEE-ecCCcccchHHHHHhC
Confidence 655555555 6677777888877764
No 389
>PRK08251 short chain dehydrogenase; Provisional
Probab=57.49 E-value=99 Score=24.82 Aligned_cols=53 Identities=28% Similarity=0.285 Sum_probs=34.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHH-HHHHHHHc--CCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAF--GAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~--Ga~V~~~~ 123 (224)
..+|++++|.-|.++|..-.+.|.+++++.+...... ....+... +.+++.+.
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAA 59 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEE
Confidence 5788999999999999998888988776654422111 11222222 66676654
No 390
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=57.47 E-value=1.3e+02 Score=26.08 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=37.4
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++-+
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~~v 231 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGATHT 231 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCeEE
Confidence 34556677566666 56899999999999999873444332 3445566677887433
No 391
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=57.41 E-value=84 Score=27.14 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=35.6
Q ss_pred eecCCcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHH----HHcCCEEEEeC
Q 027338 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIIL----RAFGAELVLTD 123 (224)
Q Consensus 75 ~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~----~~~Ga~V~~~~ 123 (224)
.+-.+|.+.+++.+++++|+.++++.|+.. +....+.+ +..|+++...+
T Consensus 154 vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 154 VGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred EeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 344479999999999999999999999854 23333333 55788887665
No 392
>PRK07060 short chain dehydrogenase; Provisional
Probab=57.34 E-value=62 Score=25.90 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=37.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHH-HHHHcCCEEEEeCCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI-ILRAFGAELVLTDPA 125 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~-~~~~~Ga~V~~~~~~ 125 (224)
++.+|++.+|.-|..++......|.+++++... ..+.+ .....+.+++.++-+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~~ 63 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDVG 63 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecCC
Confidence 367888889999999999999999987666543 22332 334457787777753
No 393
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=57.33 E-value=88 Score=25.54 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=34.8
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH-HcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|.+++++-.. ..+.+.+. .++.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEE
Confidence 377889999999999999999999987766332 23333333 3455555443
No 394
>PRK05839 hypothetical protein; Provisional
Probab=57.28 E-value=1.3e+02 Score=26.24 Aligned_cols=78 Identities=10% Similarity=-0.136 Sum_probs=42.0
Q ss_pred CCCchhhhHHHHHHHHHHHcC-CCCCCCcEEEeecCCcHHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 44 PCSSVKDRIGYSMISDAEAKG-LITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g-~~~~g~~~vv~~s~GN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.|....|.+..-.... +.| .+.+ ..|+..+++..+..++..+... +-.-.|+++.-.-..-...++.+|++|+.
T Consensus 59 ~~G~~~lr~aia~~l~~-~~g~~~~~--~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~ 135 (374)
T PRK05839 59 SAGEESLREAQRGFFKR-RFKIELKE--NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLL 135 (374)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEE
Confidence 34766777654322211 113 2444 3466666655555444333322 12245556655545555667889999999
Q ss_pred eCC
Q 027338 122 TDP 124 (224)
Q Consensus 122 ~~~ 124 (224)
++.
T Consensus 136 v~~ 138 (374)
T PRK05839 136 MPL 138 (374)
T ss_pred eec
Confidence 974
No 395
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=57.23 E-value=55 Score=29.91 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=40.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC--------------C----HHHHHHHHHcCCEEEEe
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVLT 122 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~V~~~ 122 (224)
..|+...+|..|.+.|...++.|.++++|-.... + ...++.++.+|.+++.-
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~ 213 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTN 213 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 5688889999999999999999999999854321 1 12456778899988753
No 396
>PRK06101 short chain dehydrogenase; Provisional
Probab=57.13 E-value=1e+02 Score=24.86 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=39.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcC--CEEEEeCCCCChHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG--AELVLTDPAKGMKGAVQKAEE 137 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~G--a~V~~~~~~~~~~~~~~~a~~ 137 (224)
..+|++.+|.-|.++|..-...|.+++++... ..+.+.+...+ ..++.+|-+ +.++......+
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~ 67 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDVT-DHPGTKAALSQ 67 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeCC-CHHHHHHHHHh
Confidence 56889999999999999988899997776543 34444444333 444555542 33433333333
No 397
>PRK06180 short chain dehydrogenase; Provisional
Probab=57.05 E-value=92 Score=25.76 Aligned_cols=32 Identities=31% Similarity=0.243 Sum_probs=27.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..+|++.+|.-|.+++......|.+++++...
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 67889999999999999999999998777653
No 398
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.86 E-value=1.2e+02 Score=25.53 Aligned_cols=57 Identities=28% Similarity=0.385 Sum_probs=38.9
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.+.+.++.+.++. .+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-+...
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~~ 216 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLNS 216 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEcC
Confidence 4456677555554 5688899999999999988544422 4556677778887655444
No 399
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=56.82 E-value=63 Score=28.93 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=13.6
Q ss_pred HHHHHhhhCCCCCEEEEccCchhHH
Q 027338 165 GPELWKGSGGRIDALVSGIGTGGTI 189 (224)
Q Consensus 165 ~~Ei~~q~~~~~d~iv~pvGtGg~~ 189 (224)
+.+++++. ++| +|+++|+|+.+
T Consensus 98 ~~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcC-EEEEeCChHHH
Confidence 44555554 466 55788888765
No 400
>PRK07775 short chain dehydrogenase; Provisional
Probab=56.68 E-value=1e+02 Score=25.41 Aligned_cols=53 Identities=23% Similarity=0.163 Sum_probs=36.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH-HHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.+++......|.+++++....... ...+.++..|.++..+.
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFP 65 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 578888899999999999888999877665432211 12234556677877654
No 401
>PRK14031 glutamate dehydrogenase; Provisional
Probab=56.44 E-value=53 Score=30.06 Aligned_cols=52 Identities=10% Similarity=-0.096 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
-|+..+.+..+.+...+....++|+.-..||-|...|.....+|.++++|.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3677777777655443444457899999999999999999999999999877
No 402
>PRK06354 pyruvate kinase; Provisional
Probab=56.43 E-value=1.9e+02 Score=27.65 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=73.3
Q ss_pred HHHHHHHHHCCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCC----ChHHHHHHHHHHHHhCCCe--
Q 027338 83 IGLAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNA-- 145 (224)
Q Consensus 83 ~alA~~a~~~G~~~~iv-----------vp~~~~~~~~~~~~~~Ga~V~~~~~~~----~~~~~~~~a~~~~~~~~~~-- 145 (224)
.-+...|++.|.++++- .|..+...-+...-.-|++-+..+.+. ...++.+...+.+++....
T Consensus 267 k~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 346 (590)
T PRK06354 267 KRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLP 346 (590)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 45778899999999885 344445555666677899999988531 2234444433333322111
Q ss_pred EE-c-CCC-CCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 146 YM-L-QQF-ENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 146 ~~-~-~~~-~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
|+ . ... .+...........+.++.+++ +.+.||+..-+|.|+--++ ...|.+.|+++.|..
T Consensus 347 ~~~~~~~~~~~~~~~~~~ia~aa~~~a~~~--~a~~Iv~~T~sG~ta~~vs----k~Rp~~pI~a~t~~~ 410 (590)
T PRK06354 347 YRDILSKRPEFTTTITNAISQAVSHIALQL--DAAAIVTLTKSGATARNVS----KYRPKTPILAVTPNE 410 (590)
T ss_pred hhhhhhhccccCCCHHHHHHHHHHHHHhhc--CCCEEEEECCChHHHHHHH----hhCCCCCEEEECCCH
Confidence 11 0 010 001111122334445666666 4689999999999955444 467999999998865
No 403
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=56.41 E-value=16 Score=33.66 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=32.5
Q ss_pred ecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 76 PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 76 ~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|||-+|.++|.++...|-+++++.-..... .-+|.+++.++.
T Consensus 279 ~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~------~p~~v~~i~V~t 321 (475)
T PRK13982 279 RSSGKQGFAIAAAAAAAGAEVTLISGPVDLA------DPQGVKVIHVES 321 (475)
T ss_pred CCchHHHHHHHHHHHHCCCcEEEEeCCcCCC------CCCCceEEEecC
Confidence 4899999999999999999999997432210 225667777764
No 404
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=56.33 E-value=52 Score=30.08 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=39.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC---------C---------HHHHHHHHHcCCEEEE
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 121 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~V~~ 121 (224)
..|+...+|..|.+.|+.+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5799999999999999999999999888743321 1 2346678889998865
No 405
>PLN02623 pyruvate kinase
Probab=56.33 E-value=1.9e+02 Score=27.60 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCCeEEEEE---------CC--CCCHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHHHhCCC-eE
Q 027338 83 IGLAFMAAAKQYRLIITM---------PA--SMSLERRIILRAFGAELVLTDPAK---GM-KGAVQKAEEILAKTPN-AY 146 (224)
Q Consensus 83 ~alA~~a~~~G~~~~ivv---------p~--~~~~~~~~~~~~~Ga~V~~~~~~~---~~-~~~~~~a~~~~~~~~~-~~ 146 (224)
.-+...|++.|.++.+.. |. .+....+......|++.+.+..+. .| .++.+...+.+.+-.. .+
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 446778999999998643 32 234456777788999999998531 12 2333333333221111 11
Q ss_pred E---c---CCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 147 M---L---QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 147 ~---~---~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
+ . ....+... ..-....+.++.+.++ .. ||+..-+|.++.-++ ...|+..|+++.+..
T Consensus 446 ~~~~~~~~~~~~~~~~-~~~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~lS----r~RP~~pI~avT~~~ 509 (581)
T PLN02623 446 EGTTPPNLGQAFKNHM-SEMFAFHATMMANTLG--TS-IIVFTRTGFMAILLS----HYRPSGTIFAFTNEK 509 (581)
T ss_pred cchhhhhhccccCCCh-HHHHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHHH----hhCCCCCEEEECCCH
Confidence 1 0 01011111 1223444556777774 34 999999999855444 467999999998875
No 406
>PRK09414 glutamate dehydrogenase; Provisional
Probab=56.26 E-value=58 Score=29.85 Aligned_cols=52 Identities=10% Similarity=-0.125 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
-|+..+.+..+.+.........+|+.-..||-|..+|.....+|.+++.+.+
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4677777777765544444457899999999999999999999999988865
No 407
>PLN02583 cinnamoyl-CoA reductase
Probab=56.23 E-value=63 Score=27.25 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=29.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+..+|++.+|.-|.+++......|.+++++++.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 367889999999999999999999999988764
No 408
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.18 E-value=1.1e+02 Score=25.37 Aligned_cols=48 Identities=29% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCE
Q 027338 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (224)
Q Consensus 68 ~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
++...++.+.+|..|.+++..|+.+|.+++...+ ...+.+.++.+|+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 179 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAA 179 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 4556666677799999999999999998555432 34677777778875
No 409
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=56.11 E-value=1e+02 Score=24.46 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=35.9
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
||++++|-.|..+|..-...|.+++++...... ....+.++..|+++..+.
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 54 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVV 54 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEE
Confidence 678889999999998888889987776654321 123445667787766554
No 410
>PRK06484 short chain dehydrogenase; Validated
Probab=56.09 E-value=1.4e+02 Score=27.36 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.3
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEE
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 100 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivv 100 (224)
+..+|++.++.-|.++|..-...|.+++++-
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~ 36 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVAD 36 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4678888888899999998888898776653
No 411
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.89 E-value=1.1e+02 Score=25.01 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=40.1
Q ss_pred cEEEeecC--CcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH-Hc-CCEEEE--eCCCCChHHHHHHHHHHHHh
Q 027338 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AF-GAELVL--TDPAKGMKGAVQKAEEILAK 141 (224)
Q Consensus 71 ~~vv~~s~--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~-Ga~V~~--~~~~~~~~~~~~~a~~~~~~ 141 (224)
..||++++ +.-|.++|..-.+.|.++++.-.......+++.+. .. |.+++. +|-. +.++.....++..++
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVT-SDEEITACFETIKEE 84 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCC-CHHHHHHHHHHHHHh
Confidence 56777755 78999999999999998776543322233344332 22 445544 4432 334444444555443
No 412
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=55.88 E-value=50 Score=29.39 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=38.4
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCC--eEEEEECCCCCHHHHHHHHHc--------CCEEEEeC
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAF--------GAELVLTD 123 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~--~~~ivvp~~~~~~~~~~~~~~--------Ga~V~~~~ 123 (224)
+..+.+|.+.+|...+|.-|.+.+..|+.+|. ..++++ +..+.|++.++.+ |++...++
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 45567775556666679999998888999875 223333 3355677777776 77644443
No 413
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=55.81 E-value=65 Score=28.17 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=16.9
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCC
Q 027338 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPT 211 (224)
Q Consensus 175 ~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~ 211 (224)
++| +|+++|+|+. .=+++++... ...++|.|-..
T Consensus 77 ~~d-~IIavGGGs~-~D~aK~ia~~-~~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGKT-LDTAKAVADR-LDKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcHH-HHHHHHHHHH-cCCCEEEeCCc
Confidence 355 4567777664 3444444322 23455555543
No 414
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=55.76 E-value=21 Score=35.87 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=0.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEE------------------ECCCCCHHHHHHHHHcCCEEEE
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIIT------------------MPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~iv------------------vp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.|+.-.+|..|++.|+..++.|++++|| +|...-...++.++.+|.+++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE
No 415
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=55.63 E-value=64 Score=28.00 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=46.4
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCC--Ch---HHHHHHHHHHHHhCCCeE
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK--GM---KGAVQKAEEILAKTPNAY 146 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~--~~---~~~~~~a~~~~~~~~~~~ 146 (224)
.|+..+++..+..++..+-.-| + .|+++.-.-..-...++.+|++++.++.+. .+ ....+...+.. .....+
T Consensus 76 ~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (360)
T PRK07392 76 WILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGL 152 (360)
T ss_pred hEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEE
Confidence 4777777777776665442223 3 555666565666778888999999987431 11 01122222111 233667
Q ss_pred EcCCCCCCcc
Q 027338 147 MLQQFENPAN 156 (224)
Q Consensus 147 ~~~~~~~~~~ 156 (224)
++...+||..
T Consensus 153 ~l~nP~NPTG 162 (360)
T PRK07392 153 LLNNPHNPTG 162 (360)
T ss_pred EEeCCCCCCC
Confidence 7766667653
No 416
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=55.58 E-value=42 Score=27.54 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=39.7
Q ss_pred CCCCCCCcEEEeecCCc----HHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCE
Q 027338 64 GLITPGESVLIEPTSGN----TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN----~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
|-+.+|...+|.+..|. .+..+++.+.+.|-+++.|.-+..+..-++.++.+|.+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 45667767777766655 45555666667788888888777777778888888864
No 417
>PTZ00377 alanine aminotransferase; Provisional
Probab=55.48 E-value=1.4e+02 Score=27.25 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=35.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
..|+..+++..+..++..+-..+=.-.|+++.-.-..-...++.+|++++.++-
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 357777777776666655432122234666665555667788899999999863
No 418
>PRK07576 short chain dehydrogenase; Provisional
Probab=55.43 E-value=1.1e+02 Score=25.12 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=36.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++.+|.-|.++|......|.+++++...... ....+.+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 367888999999999999988899987776544221 112234555566665544
No 419
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=55.30 E-value=1.1e+02 Score=25.58 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=48.8
Q ss_pred HHHHHHHHHC--CCeEEEEECC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeE---EcCCCCCCcc
Q 027338 83 IGLAFMAAAK--QYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY---MLQQFENPAN 156 (224)
Q Consensus 83 ~alA~~a~~~--G~~~~ivvp~-~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 156 (224)
..+.++++.+ |.+.. -++. +.-..-++.....|..|.+++.. -......++.+.++. +.- +-++|.++.
T Consensus 70 ~gvv~~~~~~~~~~~~~-Rv~G~dl~~~ll~~~~~~~~~v~llG~~--~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~- 144 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVS-RVAGADLWEALMARAGKEGTPVFLVGGK--PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPE- 144 (243)
T ss_pred HHHHHHHHHhcCCCCCC-eeChHHHHHHHHHHHHhcCCeEEEECCC--HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHH-
Confidence 4667777665 43311 1121 11233455556788999999864 233344445555554 332 223443321
Q ss_pred HHHHHHhHHHHHHhhhC-CCCCEEEEccCchh
Q 027338 157 PKIHYETTGPELWKGSG-GRIDALVSGIGTGG 187 (224)
Q Consensus 157 ~~~g~~t~~~Ei~~q~~-~~~d~iv~pvGtGg 187 (224)
-..+|++++. .++|.++++.|+-=
T Consensus 145 -------e~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 145 -------QRQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred -------HHHHHHHHHHhcCCCEEEEECCCcH
Confidence 1123555553 35899999999754
No 420
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=55.29 E-value=80 Score=25.14 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=35.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|..+|......|.+++++..++... ...+.+...+.++..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 56 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVE 56 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEE
Confidence 468889999999999999999999887776532211 11233444555655554
No 421
>PRK12742 oxidoreductase; Provisional
Probab=55.24 E-value=1.1e+02 Score=24.43 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=37.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH-HHHcCCEEEEeCC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII-LRAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~~Ga~V~~~~~ 124 (224)
+..+|++.+|.-|.++|......|.++++...... .+.+. ....+.+.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~--~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK--DAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH--HHHHHHHHHhCCeEEecCC
Confidence 36788999999999999999999998776544322 22322 3445777776664
No 422
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=55.23 E-value=1.5e+02 Score=26.14 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=52.3
Q ss_pred CCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 45 CSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|.-..|.+..-.... ..+.+.+ ..|+..+++..+..++..+-...- -.|+++...-..-...++.+|++|+.++-
T Consensus 73 ~g~~~lr~aia~~~~~-~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~g-d~v~i~~P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 73 VGALSAREAIASYYHN-PDGPIEA--DDVVLCSGCSHAIEMCIAALANAG-QNILVPRPGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred CCCHHHHHHHHHHHhh-cCCCCCH--HHEEECcChHHHHHHHHHHhCCCC-CEEEEeCCCChhHHHHHHHcCCEEEEeec
Confidence 4655566544433221 1222333 346666666666665554332222 24555554444456678899999998863
Q ss_pred C--CChHHHHHHHHHHHHhCCCeEEcCCCCCCc
Q 027338 125 A--KGMKGAVQKAEEILAKTPNAYMLQQFENPA 155 (224)
Q Consensus 125 ~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (224)
. .++.-..+..++..++....+++...+||.
T Consensus 149 ~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPt 181 (401)
T TIGR01264 149 LPDKSWEIDLKQLESLIDEKTAALIVNNPSNPC 181 (401)
T ss_pred CCccCCCCCHHHHHHHhccCceEEEEcCCCCCC
Confidence 1 111111122222223333566665556654
No 423
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=55.02 E-value=85 Score=23.31 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 027338 81 TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKA 135 (224)
Q Consensus 81 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a 135 (224)
.|..+|-.....|.+++|. ...-+.-...++..|.+|+..++ .+.+++....
T Consensus 53 ~G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~ 104 (121)
T COG1433 53 AGIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPG-GTVEEAIKAF 104 (121)
T ss_pred chHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCC-CCHHHHHHHH
Confidence 3456777777778777765 45555668888899999999887 4566665544
No 424
>PRK07063 short chain dehydrogenase; Provisional
Probab=54.93 E-value=1.1e+02 Score=24.75 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=41.2
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHH--cCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRA--FGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~--~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++++|--|.++|..-...|.+++++-..... ....+.++. .+.++..+..+ .+.++......+..++
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67888999999999999988999987776443211 112233443 45565544321 2233344444444333
No 425
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=54.92 E-value=1e+02 Score=25.27 Aligned_cols=51 Identities=25% Similarity=0.235 Sum_probs=35.0
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCe-EEEEECCCCCHHHHHHHHHcC
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFG 116 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~~~~~G 116 (224)
+...+.++.+.+|. ..|..|.++...|+.+|.+ ++++ ..+..+.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 35667777555555 5788999999999999988 4443 23445566666677
No 426
>PRK06202 hypothetical protein; Provisional
Probab=54.89 E-value=19 Score=29.32 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=28.7
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 176 IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 176 ~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
...+=+++|+|....-++..++..+++.+|+|+++..
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~ 98 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP 98 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 4567788999987777777666667788999999864
No 427
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=54.84 E-value=87 Score=27.50 Aligned_cols=55 Identities=29% Similarity=0.446 Sum_probs=38.7
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+|...+|. ..|..|.+++..|+.+|...++++.. ...+.+.++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 466777555555 56999999999999999854444432 33477888889985544
No 428
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=54.81 E-value=86 Score=27.57 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=36.6
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHH----HcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILR----AFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~----~~Ga~V~~~~ 123 (224)
+..+.+-..|.+.+++.+++++|++++++-|..- +...++.++ ..|.+|...+
T Consensus 156 kv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 156 KVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 3333444479999999999999999999999853 333343333 3577776654
No 429
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.65 E-value=97 Score=25.28 Aligned_cols=72 Identities=10% Similarity=0.061 Sum_probs=42.6
Q ss_pred CcEEEeecC--CcHHHHHHHHHHHCCCeEEEEEC----CCC----CH----HHHHHHHHcCCEEEEeCCC-CChHHHHHH
Q 027338 70 ESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP----ASM----SL----ERRIILRAFGAELVLTDPA-KGMKGAVQK 134 (224)
Q Consensus 70 ~~~vv~~s~--GN~g~alA~~a~~~G~~~~ivvp----~~~----~~----~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~ 134 (224)
+..+|++.+ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+.-+ .+.++....
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 366777766 48999999999999998777521 110 11 1234466778888766432 233333444
Q ss_pred HHHHHHh
Q 027338 135 AEEILAK 141 (224)
Q Consensus 135 a~~~~~~ 141 (224)
..+..++
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12859 87 LNKVTEQ 93 (256)
T ss_pred HHHHHHH
Confidence 4444443
No 430
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=54.61 E-value=61 Score=27.58 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=36.3
Q ss_pred HHHHHHHHCCCeEEEEEC---CC-CCHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 027338 84 GLAFMAAAKQYRLIITMP---AS-MSLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 142 (224)
Q Consensus 84 alA~~a~~~G~~~~ivvp---~~-~~~~----~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~ 142 (224)
++.|.++.+|++.+.+.. +. .++. -++.++..|.+++++++..+- +.++.++++.
T Consensus 186 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~ia~~~ 248 (287)
T cd01137 186 AFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVND----RLMKQVAKET 248 (287)
T ss_pred cHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCh----HHHHHHHHHh
Confidence 788999999999876653 22 2222 355678999999999864332 3334455544
No 431
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=54.56 E-value=85 Score=23.13 Aligned_cols=54 Identities=26% Similarity=0.269 Sum_probs=35.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCe-EEEEECCCCCHH----HHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLE----RRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~-~~ivvp~~~~~~----~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|..|.+++......|.. ++++.+...... .++.++..|.++..+..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 4578888899999999988888875 444433322211 13566667888776653
No 432
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=54.55 E-value=88 Score=27.56 Aligned_cols=10 Identities=60% Similarity=0.916 Sum_probs=5.1
Q ss_pred EEEccCchhH
Q 027338 179 LVSGIGTGGT 188 (224)
Q Consensus 179 iv~pvGtGg~ 188 (224)
+|+++|+|+.
T Consensus 87 ~IIavGGGsv 96 (366)
T PRK09423 87 VVIGIGGGKT 96 (366)
T ss_pred EEEEecChHH
Confidence 3455665553
No 433
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.46 E-value=62 Score=28.26 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=15.6
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcC
Q 027338 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEP 210 (224)
Q Consensus 175 ~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~ 210 (224)
++| +|+++|+|+.+ =+++++... ....+|.|-.
T Consensus 77 ~~D-~IIavGGGS~i-D~aK~ia~~-~~~P~iaIPT 109 (351)
T cd08170 77 GAD-VVIGIGGGKTL-DTAKAVADY-LGAPVVIVPT 109 (351)
T ss_pred CCC-EEEEecCchhh-HHHHHHHHH-cCCCEEEeCC
Confidence 355 45677766643 334433322 2344555544
No 434
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=54.43 E-value=1.2e+02 Score=24.93 Aligned_cols=57 Identities=30% Similarity=0.494 Sum_probs=38.3
Q ss_pred cCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Q 027338 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (224)
Q Consensus 63 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
...+.++...+|...+|..|.+++..++.+|.+++++... ..+.+.++.+|++.+..
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~~ 190 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHVID 190 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCceeee
Confidence 4456666566666667999999999999999985554332 34455556677654443
No 435
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.21 E-value=75 Score=22.39 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=17.8
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcCCCcEEEE
Q 027338 176 IDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 207 (224)
Q Consensus 176 ~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vig 207 (224)
.+.+++..+.=..-.-++..+++.+|+.++++
T Consensus 63 a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 63 ADAVVILTDDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp ESEEEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cCEEEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 45555555555555555555555566555554
No 436
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=54.21 E-value=1.4e+02 Score=26.43 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=9.9
Q ss_pred CCCEEEEccCchhHH
Q 027338 175 RIDALVSGIGTGGTI 189 (224)
Q Consensus 175 ~~d~iv~pvGtGg~~ 189 (224)
++|. |+++|+|+.+
T Consensus 79 ~~D~-IIaiGGGS~i 92 (386)
T cd08191 79 GPDV-IIGLGGGSCI 92 (386)
T ss_pred CCCE-EEEeCCchHH
Confidence 5665 6788888754
No 437
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=54.17 E-value=1e+02 Score=27.31 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=12.8
Q ss_pred HHHhhhCCCCCEEEEccCchhHH
Q 027338 167 ELWKGSGGRIDALVSGIGTGGTI 189 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvGtGg~~ 189 (224)
+++++. ++| +|+++|+|+.+
T Consensus 81 ~~~~~~--~~D-~IIaiGGGS~i 100 (382)
T PRK10624 81 EVFKAS--GAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHHhc--CCC-EEEEeCChHHH
Confidence 444443 467 57788988764
No 438
>PRK07201 short chain dehydrogenase; Provisional
Probab=54.06 E-value=88 Score=29.56 Aligned_cols=72 Identities=19% Similarity=0.136 Sum_probs=44.6
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|++.+|.-|.++|..-.+.|.+++++...... ....+.++..|.++..+..+ .+.++..+..++..++
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467888999999999999888889988777654321 12234455567666655422 2333444444444443
No 439
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.95 E-value=1.1e+02 Score=24.46 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
..+|++++|.-|.++|..-...|.++++....
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 67899999999999999988899988775543
No 440
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=53.77 E-value=1e+02 Score=23.95 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=72.5
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
++|..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. .+ +++.. ++- +...+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~~----l~ell-------~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--VS----LDELL-------AQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--SS----HHHHH-------HH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--ee----hhhhc-------chh-hhhhhhh
Confidence 6788889999999999999999999988877654333 333444422 12 33322 222 4444433
Q ss_pred CCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHH--HHHHHHHhcCCCcEEEEEcCCCCCCc
Q 027338 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKEKNPNIKLYGIEPTESPVL 216 (224)
Q Consensus 151 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~a--Gi~~~~~~~~~~~~vigve~~~~~~~ 216 (224)
-.++.+ ..-+..|.+++++ .+.+++-++-|..+- .+..+++. .+..-.+.+.-...++
T Consensus 100 plt~~T----~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALES--GKIAGAALDVFEPEPL 159 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SSSSS
T ss_pred cccccc----ceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCCCCC
Confidence 333332 1345568889884 689999999999864 44555543 4455555555444333
No 441
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=53.72 E-value=68 Score=30.08 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHCC-CeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Q 027338 79 GNTGIGLAFMAAAKQ-YRLIITMPASM--SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 79 GN~g~alA~~a~~~G-~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++..++.+| ++++++.|..- +...++.++..|+.+...+
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 799999999999998 99999999864 4455566777888887665
No 442
>PRK09206 pyruvate kinase; Provisional
Probab=53.49 E-value=1.9e+02 Score=26.79 Aligned_cols=124 Identities=12% Similarity=0.027 Sum_probs=72.2
Q ss_pred HHHHHHHHHCCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCC----ChHHHHHHHHHHHHhCCCeE-
Q 027338 83 IGLAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAY- 146 (224)
Q Consensus 83 ~alA~~a~~~G~~~~iv-----------vp~~~~~~~~~~~~~~Ga~V~~~~~~~----~~~~~~~~a~~~~~~~~~~~- 146 (224)
.-+...|++.|.++++- .|..+...-+...-.-|++-+..+.+. .-.++.+...+.+++....+
T Consensus 261 k~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~ 340 (470)
T PRK09206 261 KMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMN 340 (470)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 44777889999999885 344444555666667899999987532 12334333333322211111
Q ss_pred E-c-CCCCCC-ccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 147 M-L-QQFENP-ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 147 ~-~-~~~~~~-~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
+ + ...... ..........+.++.+++ +...||+..-+|.++.-+ ....|...|+++.|..
T Consensus 341 ~~~~~~~~~~~~~~~~~ia~sa~~~A~~l--~a~aIv~~T~sG~tA~~i----s~~RP~~pIia~t~~~ 403 (470)
T PRK09206 341 SRLESNNDNRKLRITEAVCRGAVETAEKL--DAPLIVVATQGGKSARSV----RKYFPDATILALTTNE 403 (470)
T ss_pred hhhhhhccccCCChHHHHHHHHHHHHhcC--CCCEEEEECCCcHHHHHH----HhhCCCCCEEEECCCH
Confidence 1 0 011010 011122334445666666 478999999999995544 4467999999998865
No 443
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=53.38 E-value=1.7e+02 Score=26.30 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=63.4
Q ss_pred cEEEeecCCcHHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEc
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML 148 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~--G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (224)
+..|-+|+|+-|.+..-..+++ .++++.+.-......-.++++.|+.+.+.+..+ . .+.++.+...+
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~---~~~~l~~~l~~---- 71 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE----E---AAKELKEALAA---- 71 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----H---HHHHHHHhhcc----
Confidence 3456688999999877666665 677777765555556677889999999988742 1 11222111101
Q ss_pred CCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHh
Q 027338 149 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 198 (224)
Q Consensus 149 ~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~ 198 (224)
.+... ..|... ..|+++. +++|.|+.++++...+.-+..+++.
T Consensus 72 ---~~~~v-~~G~~~-~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~a 114 (385)
T PRK05447 72 ---AGIEV-LAGEEG-LCELAAL--PEADVVVAAIVGAAGLLPTLAAIRA 114 (385)
T ss_pred ---CCceE-EEChhH-HHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHC
Confidence 00001 112111 1233332 4689999998876555556666643
No 444
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=53.32 E-value=1.7e+02 Score=26.18 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=60.6
Q ss_pred CCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 45 CSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|.-..|-+..---.....-.+.+. ..|+...++..|..++..+-.-.=.- |++|.-.=+.-....+..|++++.++-
T Consensus 65 ~G~~~LReaia~~~~~~~~~~~~~~-~eiivt~Ga~~al~~~~~a~~~pGDe-Vlip~P~Y~~y~~~~~~~gg~~v~v~l 142 (393)
T COG0436 65 AGIPELREAIAEKYKRRYGLDVDPE-EEIIVTAGAKEALFLAFLALLNPGDE-VLIPDPGYPSYEAAVKLAGGKPVPVPL 142 (393)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-CeEEEeCCHHHHHHHHHHHhcCCCCE-EEEeCCCCcCHHHHHHhcCCEEEEEeC
Confidence 4766677655443333322234444 33777777778777777666543332 333443333456777889999999983
Q ss_pred --C-CChHHHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 027338 125 --A-KGMKGAVQKAEEILAKTPNAYMLQQFENPAN 156 (224)
Q Consensus 125 --~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (224)
+ .++.-..+..++...+.....+++.-+||-.
T Consensus 143 ~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTG 177 (393)
T COG0436 143 DEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTG 177 (393)
T ss_pred CcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcC
Confidence 2 1333223333332232335777766667653
No 445
>PRK06057 short chain dehydrogenase; Provisional
Probab=53.28 E-value=1.2e+02 Score=24.55 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=41.4
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHH-HHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI-ILRAFGAELVLTDPAKGMKGAVQKAEEI 138 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~-~~~~~Ga~V~~~~~~~~~~~~~~~a~~~ 138 (224)
++.+|++.+|.-|.+++......|.+++++.... .+.+ ..+..+.+++.++-. +.++..+...+.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~---~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~ 73 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDP---EAGKAAADEVGGLFVPTDVT-DEDAVNALFDTA 73 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHcCCcEEEeeCC-CHHHHHHHHHHH
Confidence 4778899999999999999999999887764432 2222 223345566666643 333333344444
No 446
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=53.27 E-value=1.2e+02 Score=24.66 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=43.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHH-HcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILR-AFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~-~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+..+|+++++.-|.++|......|.+++++...+... ...+.++ ..|.++..+.-+ .+.++..+...++.++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3778889999999999999999999877664433211 1122332 356665555422 2334444445555444
No 447
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=53.07 E-value=1.4e+02 Score=25.78 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=31.0
Q ss_pred EEEeecCCcHHHHHHHHHHHCCC-eEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|+...++..+..++..+- .+- +-.|+++...-..-...++.+|++++.++-
T Consensus 76 ~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~ 128 (351)
T PRK01688 76 QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPT 128 (351)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeec
Confidence 4666666666665555443 222 134555544434445667889999999874
No 448
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.06 E-value=1.2e+02 Score=30.84 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE-eCCCCChHHHHHHHHHHHHhCCCeEEc
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL-TDPAKGMKGAVQKAEEILAKTPNAYML 148 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (224)
...|+.-.+|..|++.|+..++.|++++||=.... .|..+.. .+......+......+..++.+--+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~----------~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~ 499 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV----------VGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIET 499 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC----------CcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEe
Q ss_pred CCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCch
Q 027338 149 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186 (224)
Q Consensus 149 ~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtG 186 (224)
+. ..|......++.++. .+|+||+++|++
T Consensus 500 ~~-------~vg~~~~~~~l~~~~--~yDaViIATGa~ 528 (1006)
T PRK12775 500 NK-------VIGKTFTVPQLMNDK--GFDAVFLGVGAG 528 (1006)
T ss_pred CC-------ccCCccCHHHHhhcc--CCCEEEEecCCC
No 449
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=53.04 E-value=83 Score=27.99 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=43.2
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCCeEEc
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYML 148 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~ 148 (224)
..|+..+++..+..++..+-. +-.-.|+++...-..-...++.+|++++.++... ++.-..+..++..++....+++
T Consensus 105 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~ 183 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIM 183 (412)
T ss_pred hhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEE
Confidence 346666666666665555432 2222455555444445666888999999887421 1111112222222333455666
Q ss_pred CCCCCCc
Q 027338 149 QQFENPA 155 (224)
Q Consensus 149 ~~~~~~~ 155 (224)
...+||.
T Consensus 184 ~~p~NPt 190 (412)
T PTZ00433 184 TNPSNPC 190 (412)
T ss_pred eCCCCCC
Confidence 5445654
No 450
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=53.04 E-value=1.5e+02 Score=26.15 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=39.1
Q ss_pred eEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC--hHHHHHHHHHHHHhCC-CeEEcCCC-CCCccHHHHHHhHHHHHHh
Q 027338 95 RLIITMPASMSLERRIILRAFGAELVLTDPAKG--MKGAVQKAEEILAKTP-NAYMLQQF-ENPANPKIHYETTGPELWK 170 (224)
Q Consensus 95 ~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~--~~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~Ei~~ 170 (224)
|..++.-.+.-...-+.++.+|-++..+.+... .....+...+..++.. .....+.. .||.. . ...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~-~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT--T-TVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH--H-HHHHHHHHHH
Confidence 444444444444444455556766666654322 1233344444333321 12212221 23432 1 1122234444
Q ss_pred hhCCCCCEEEEccCchhHH
Q 027338 171 GSGGRIDALVSGIGTGGTI 189 (224)
Q Consensus 171 q~~~~~d~iv~pvGtGg~~ 189 (224)
+. ++|. |+++|+|+.+
T Consensus 81 ~~--~~D~-IiavGGGS~i 96 (380)
T cd08185 81 EE--GCDF-VVGLGGGSSM 96 (380)
T ss_pred Hc--CCCE-EEEeCCccHH
Confidence 43 4664 5678887754
No 451
>PLN02253 xanthoxin dehydrogenase
Probab=52.96 E-value=95 Score=25.61 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
..+|++.+|.-|.++|......|.+++++-.
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 6789999999999999999889998777644
No 452
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=52.81 E-value=1.5e+02 Score=26.93 Aligned_cols=54 Identities=19% Similarity=0.022 Sum_probs=37.9
Q ss_pred cEEEeecCCcHHHHHHHHHHH------CCC--eEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAA------KQY--RLIITMPASMSLERRIILRAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~------~G~--~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
..++..++|..+..+|+.+.. .++ .-.|++|...-......+...|+++++++-
T Consensus 79 ~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 79 RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 346777777777777766541 132 345777877767777788889999999874
No 453
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=52.79 E-value=82 Score=27.33 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=28.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS 105 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~ 105 (224)
+..+.+-.+|.+.+++.+++.+|+.++++.|....
T Consensus 155 ~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 155 QLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 33344556899999999999999999999998753
No 454
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=52.76 E-value=1e+02 Score=29.55 Aligned_cols=56 Identities=21% Similarity=0.115 Sum_probs=40.2
Q ss_pred CCCCCcEEEeecCCcHHHHHHHHHHHCCC-eEEEEECCC-----CCHHHHHHHHHcCCEEEEe
Q 027338 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPAS-----MSLERRIILRAFGAELVLT 122 (224)
Q Consensus 66 ~~~g~~~vv~~s~GN~g~alA~~a~~~G~-~~~ivvp~~-----~~~~~~~~~~~~Ga~V~~~ 122 (224)
...+ +.||...+||.|.-+|..+.++|. +++++.+.. .....++.....|.++++.
T Consensus 320 ~~~g-k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~ 381 (652)
T PRK12814 320 LHPG-KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLREL 381 (652)
T ss_pred ccCC-CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEec
Confidence 3444 568888899999999999999997 477776543 1234455556678888764
No 455
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=52.69 E-value=1.3e+02 Score=24.65 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=36.2
Q ss_pred CCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCC
Q 027338 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (224)
+.+.++...+|...+|..|.+++..++..|.+++++.+.. +.+.++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 4466775555666679999999999999999977665432 4555567785
No 456
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=52.67 E-value=89 Score=26.70 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=25.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~ 104 (224)
++++.-.+|-.++|++++....|++-+.++.++.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3455555666789999999999997776666653
No 457
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=52.64 E-value=1.2e+02 Score=26.81 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=37.5
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC------CH----HHHHHHHHcCCEEEE
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM------SL----ERRIILRAFGAELVL 121 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~------~~----~~~~~~~~~Ga~V~~ 121 (224)
+.++...+|..|.-+|...+.+|.+++++.+... ++ ...+.++..|.+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4577778899999999999999999999876432 22 123445677777764
No 458
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=52.51 E-value=91 Score=27.11 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=16.2
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCC
Q 027338 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPT 211 (224)
Q Consensus 175 ~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~ 211 (224)
++|. |+++|+|+.+ =+++++.... ...+|.|-..
T Consensus 77 ~~d~-IIaiGGGs~i-D~aK~ia~~~-~~p~i~IPTt 110 (337)
T cd08177 77 GADG-IVAIGGGSTI-DLAKAIALRT-GLPIIAIPTT 110 (337)
T ss_pred CCCE-EEEeCCcHHH-HHHHHHHHHh-cCCEEEEcCC
Confidence 3554 5667776643 3333332221 3455555543
No 459
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=52.42 E-value=89 Score=24.32 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCC--CCHHH--HHHHHHcC---CEEEEeCC
Q 027338 52 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS--MSLER--RIILRAFG---AELVLTDP 124 (224)
Q Consensus 52 ~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~--~~~~~--~~~~~~~G---a~V~~~~~ 124 (224)
.+...+....+.|. .++..|+.|. ......++.+|+.-.++.... .|..| .+.++.++ .+|..++.
T Consensus 131 ~~~~~l~~L~~~Gi------~~~i~TGD~~-~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI------KVAILTGDNE-STASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE------EEEEEESSEH-HHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc------ceeeeecccc-ccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 46777777888774 3555565555 555677889999655555555 77777 77777765 47888884
Q ss_pred CCChHHH
Q 027338 125 AKGMKGA 131 (224)
Q Consensus 125 ~~~~~~~ 131 (224)
+.+++
T Consensus 204 --g~nD~ 208 (215)
T PF00702_consen 204 --GVNDA 208 (215)
T ss_dssp --SGGHH
T ss_pred --CHHHH
Confidence 34444
No 460
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=52.27 E-value=62 Score=31.54 Aligned_cols=53 Identities=21% Similarity=0.114 Sum_probs=41.1
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCe-EEEEECCCC-----CHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASM-----SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~-~~ivvp~~~-----~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.||...+||.|.-+|..+.++|.+ ++++.+... ....++.++..|.++++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~ 629 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLH 629 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecC
Confidence 5688899999999999999999997 888876431 2344556778898887643
No 461
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=52.27 E-value=1.2e+02 Score=26.73 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=38.5
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHc-CCEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF-GAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~-Ga~V~~ 121 (224)
+...+.++...+|. .+|-.|.+++..|+..|.+.++++..+ +.+++.++.+ |++++.
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~~--~~~~~~~~~~~~~~vi~ 235 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDRV--PERLEMARSHLGAETIN 235 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHcCCcEEEc
Confidence 44556677454444 568889999999999998644444333 5677777777 666543
No 462
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=52.00 E-value=1.3e+02 Score=24.53 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECC-C-C--------CHH-----HHHHHHHcC-
Q 027338 53 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-S-M--------SLE-----RRIILRAFG- 116 (224)
Q Consensus 53 a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~-~-~--------~~~-----~~~~~~~~G- 116 (224)
-...+..+..++. ..++..+........-..++..|+|++++-.. . . ... -.+.+-..|
T Consensus 46 ~~~~i~~~~~~~v-----dgiI~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~ 120 (268)
T cd06306 46 QIAQLEDCAAWGA-----DAILLGAVSPDGLNEILQQVAASIPVIALVNDINSPDITAKVGVSWYEMGYQAGEYLAQRHP 120 (268)
T ss_pred HHHHHHHHHHcCC-----CEEEEcCCChhhHHHHHHHHHCCCCEEEeccCCCCcceeEEecCChHHHHHHHHHHHHHHhh
Confidence 3345666666654 56666554443332224456789999877321 1 0 111 122232333
Q ss_pred -----CEEEEeCCCCCh---HHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhH
Q 027338 117 -----AELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 188 (224)
Q Consensus 117 -----a~V~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~ 188 (224)
.+|..+.+..+. .++.+-.++..++. +.-.............++ ....+++++- +++|+||+. ...
T Consensus 121 ~~~~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~~i~~~---d~~ 194 (268)
T cd06306 121 KGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGS-AIEISAIKYGDTGKEVQR-KLVEEALEAH-PDIDYIVGS---AVA 194 (268)
T ss_pred cCCCCceEEEEeCCCCCchHHHHHHHHHHHHhhc-CcEEeeeccCCccHHHHH-HHHHHHHHhC-CCcCEEeec---chh
Confidence 688877543222 22222233444433 322222111111212222 2334455443 568998853 566
Q ss_pred HHHHHHHHHhcCC--CcEEEEEc
Q 027338 189 ITGAGKFLKEKNP--NIKLYGIE 209 (224)
Q Consensus 189 ~aGi~~~~~~~~~--~~~vigve 209 (224)
+.|+..++++.+. ++.|+|..
T Consensus 195 a~~~~~~l~~~g~p~di~vig~~ 217 (268)
T cd06306 195 AEAAVGILRQRGLTDQIKIVSTY 217 (268)
T ss_pred hhHHHHHHHhcCCCCCeEEEecC
Confidence 7899999988763 68888874
No 463
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=51.96 E-value=1.2e+02 Score=27.52 Aligned_cols=31 Identities=16% Similarity=-0.024 Sum_probs=25.1
Q ss_pred eecCCcHHHHHHHHHHHCCCeEEEEECCCCC
Q 027338 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASMS 105 (224)
Q Consensus 75 ~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~ 105 (224)
++.-|.+..+|+.+-++.|.++.|++|....
T Consensus 16 ~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~ 46 (473)
T TIGR02095 16 TGGLADVVGALPKALAALGHDVRVLLPAYGC 46 (473)
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEecCCcC
Confidence 3555778888999988999999999997543
No 464
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=51.86 E-value=1.3e+02 Score=24.45 Aligned_cols=149 Identities=9% Similarity=0.074 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCCCCCcEEEeecCC-cHHHHHHHHHHHCCCeEEEEECCCC---------CHH-----HHHHHHHc--C-
Q 027338 55 SMISDAEAKGLITPGESVLIEPTSG-NTGIGLAFMAAAKQYRLIITMPASM---------SLE-----RRIILRAF--G- 116 (224)
Q Consensus 55 ~~~~~a~~~g~~~~g~~~vv~~s~G-N~g~alA~~a~~~G~~~~ivvp~~~---------~~~-----~~~~~~~~--G- 116 (224)
..+..+.+++. ..++..+.. +...+..-.++..|+|++.+-.... ... -.+.+... |
T Consensus 48 ~~i~~l~~~~v-----dgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~ 122 (275)
T cd06320 48 SIAENMINKGY-----KGLLFSPISDVNLVPAVERAKKKGIPVVNVNDKLIPNATAFVGTDNKANGVRGAEWIIDKLAEG 122 (275)
T ss_pred HHHHHHHHhCC-----CEEEECCCChHHhHHHHHHHHHCCCeEEEECCCCCCccceEEecCcHHHHHHHHHHHHHHhCCC
Confidence 45555556654 455554332 2223344556778999887743211 001 12223222 3
Q ss_pred CEEEEeCCCCC---hHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHH
Q 027338 117 AELVLTDPAKG---MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAG 193 (224)
Q Consensus 117 a~V~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~ 193 (224)
.+|..+.+..+ ...+..-..+..++.++.-.............++ ....+++++- +++|.|++. +...+.|+.
T Consensus 123 ~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~ai~~~--~d~~a~~~~ 198 (275)
T cd06320 123 GKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAY-DVATTILQRN-PDLKAIYCN--NDTMALGVV 198 (275)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHH-HHHHHHHHhC-CCccEEEEC--CchhHHHHH
Confidence 37776643211 1233333344444442432221111111211222 2333455443 567877655 455666899
Q ss_pred HHHHhcCC--CcEEEEEcCCC
Q 027338 194 KFLKEKNP--NIKLYGIEPTE 212 (224)
Q Consensus 194 ~~~~~~~~--~~~vigve~~~ 212 (224)
.++++.+. ++.|+|.+-..
T Consensus 199 ~al~~~g~~~di~vig~d~~~ 219 (275)
T cd06320 199 EAVKNAGKQGKVLVVGTDGIP 219 (275)
T ss_pred HHHHhcCCCCCeEEEecCCCH
Confidence 99988765 78888887653
No 465
>PRK06108 aspartate aminotransferase; Provisional
Probab=51.85 E-value=1.6e+02 Score=25.52 Aligned_cols=76 Identities=14% Similarity=0.034 Sum_probs=41.9
Q ss_pred CCchhhhHHHHHHHHHHHcC-CCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 45 CSSVKDRIGYSMISDAEAKG-LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g-~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|....|.+........ .| .+.+ ..|+..+++..+..++..+-.. -.-.|+++...-..-...++.+|++++.++
T Consensus 61 ~G~~~lr~~la~~~~~~-~~~~~~~--~~i~~t~g~~~al~~~~~~l~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~ 136 (382)
T PRK06108 61 LGIPELREALARYVSRL-HGVATPP--ERIAVTSSGVQALMLAAQALVG-PGDEVVAVTPLWPNLVAAPKILGARVVCVP 136 (382)
T ss_pred CCCHHHHHHHHHHHHHH-hCCCcCc--ceEEEeCChHHHHHHHHHHhcC-CCCEEEEeCCCccchHHHHHHCCCEEEEee
Confidence 46666665554432211 13 2333 3477777777777666654322 112344444333344556788999999987
Q ss_pred C
Q 027338 124 P 124 (224)
Q Consensus 124 ~ 124 (224)
.
T Consensus 137 ~ 137 (382)
T PRK06108 137 L 137 (382)
T ss_pred C
Confidence 4
No 466
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=51.59 E-value=1.5e+02 Score=25.12 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=37.1
Q ss_pred HcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Q 027338 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+.++...+|. .+|-.|.+++..|+..|++.+++.. ....+.+.++.+|++-+.
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~~~ 215 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADYTI 215 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcEEe
Confidence 33456777565666 4678899999999999999443332 234455566677775433
No 467
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.46 E-value=1.3e+02 Score=24.38 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=41.7
Q ss_pred cEEEeecC--CcHHHHHHHHHHHCCCeEEEEECCC-----------CCH-HHHHHHHHcCCEEEEeCCC-CChHHHHHHH
Q 027338 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPAS-----------MSL-ERRIILRAFGAELVLTDPA-KGMKGAVQKA 135 (224)
Q Consensus 71 ~~vv~~s~--GN~g~alA~~a~~~G~~~~ivvp~~-----------~~~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a 135 (224)
..+|++.+ |.-|.++|..-...|.+++++.+.. ... ...+.++.+|.+++.+..+ .+.++.....
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 86 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRVF 86 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 56777766 4799999988888899877765431 111 1223455667777776632 2233334444
Q ss_pred HHHHHh
Q 027338 136 EEILAK 141 (224)
Q Consensus 136 ~~~~~~ 141 (224)
.++.++
T Consensus 87 ~~~~~~ 92 (256)
T PRK12748 87 YAVSER 92 (256)
T ss_pred HHHHHh
Confidence 444443
No 468
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=51.38 E-value=29 Score=27.33 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCC
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~ 103 (224)
|..-.+|..|.++|..+...|++++++-+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 4455679999999999999999999986653
No 469
>PRK06247 pyruvate kinase; Provisional
Probab=51.33 E-value=2e+02 Score=26.60 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=73.6
Q ss_pred HHHHHHHHHCCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCC----ChHHHHHHHHHHHHhCCCeE-
Q 027338 83 IGLAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAY- 146 (224)
Q Consensus 83 ~alA~~a~~~G~~~~iv-----------vp~~~~~~~~~~~~~~Ga~V~~~~~~~----~~~~~~~~a~~~~~~~~~~~- 146 (224)
.-+...|+++|.++++- .|..+...-+...-.-|++-+..+.+. .-.++.+...+.+.+....+
T Consensus 258 k~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 337 (476)
T PRK06247 258 KRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPT 337 (476)
T ss_pred HHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhccc
Confidence 44667889999998885 344555555666667799999988531 22344444444333221111
Q ss_pred Ec----CCC-CCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEcCCC
Q 027338 147 ML----QQF-ENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (224)
Q Consensus 147 ~~----~~~-~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~pvGtGg~~aGi~~~~~~~~~~~~vigve~~~ 212 (224)
+. ... .............+.++.+++ +...||+..-+|.++--++ ...|.+.|+++.+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l--~a~~Iv~~T~sG~ta~~is----k~RP~~pI~a~t~~~ 402 (476)
T PRK06247 338 YPPLIHAQRPQPEATKRDAISYAARDIAERL--DLAALVAYTSSGDTALRAA----RERPPLPILALTPNP 402 (476)
T ss_pred hhhhhhhcccccCCCHHHHHHHHHHHHHHhC--CCCEEEEEcCCcHHHHHHH----hhCCCCCEEEECCCH
Confidence 11 000 000111122334445677776 4789999999999965444 467999999998875
No 470
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=51.14 E-value=62 Score=24.06 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=34.7
Q ss_pred EeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 74 v~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.....|+-|.-+|+.-++.|.+++++.... +.+.++..|-++...+
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~----~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP----RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH----HHHHHHHHCEEEEETT
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc----cHHhhhheeEEEEecc
Confidence 445678899999999888999998887654 3555777777766555
No 471
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=51.05 E-value=2.1e+02 Score=26.83 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=30.0
Q ss_pred EEEeecCCcHHHHHHHHHH----HCCCeEEEEECCCCCHHHHH--HHHHcCCEEEEeCC
Q 027338 72 VLIEPTSGNTGIGLAFMAA----AKQYRLIITMPASMSLERRI--ILRAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~----~~G~~~~ivvp~~~~~~~~~--~~~~~Ga~V~~~~~ 124 (224)
.|+..+++..+..++..+- .++=.-.|+++.-.-..-.. .+..+|++++.++.
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~ 215 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKA 215 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeec
Confidence 6888888888877766541 22222234444433222233 34557899988764
No 472
>PRK07023 short chain dehydrogenase; Provisional
Probab=51.04 E-value=1.1e+02 Score=24.64 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=35.0
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.++|......|.+++++...... . .....+.++..+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~ 51 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVE 51 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEE
Confidence 46889999999999999988899998887654322 1 1334566665554
No 473
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=51.01 E-value=29 Score=30.88 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=28.4
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~ 103 (224)
+|-.-.+|..|+.++.+|+.+|++++++-|..
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 46667889999999999999999999998863
No 474
>PRK08339 short chain dehydrogenase; Provisional
Probab=50.54 E-value=1.2e+02 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEEC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp 101 (224)
+..+|++++|.-|.++|......|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 36788999999999999999999998777644
No 475
>PRK12747 short chain dehydrogenase; Provisional
Probab=50.44 E-value=1e+02 Score=24.86 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=36.2
Q ss_pred CcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHHHHHcCCEEEEeC
Q 027338 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
+..+|++++|--|.++|..-...|.++++....... ....+.++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 367899999999999999999999987775432211 222334555566655443
No 476
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=50.30 E-value=1.2e+02 Score=23.44 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=40.9
Q ss_pred EEEeecC--CcHHHHHHHHHHHCCCeEEEEE-----------CCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHH
Q 027338 72 VLIEPTS--GNTGIGLAFMAAAKQYRLIITM-----------PASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEE 137 (224)
Q Consensus 72 ~vv~~s~--GN~g~alA~~a~~~G~~~~ivv-----------p~~~-~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~ 137 (224)
.++..++ ||..-+|+-+-...++|+++++ +... .......++..+-....+....+. ...++|.+
T Consensus 61 ~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~ 139 (157)
T TIGR03845 61 AILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGIPYTIPREPEEA-KLIEKAIS 139 (157)
T ss_pred EEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCCCeEEeCCHHHH-HHHHHHHH
Confidence 3444444 6666666665557899999999 4311 111222334455445555543445 66666666
Q ss_pred HHHhCCCeEE
Q 027338 138 ILAKTPNAYM 147 (224)
Q Consensus 138 ~~~~~~~~~~ 147 (224)
.+.+.++.++
T Consensus 140 ~a~~~~gPv~ 149 (157)
T TIGR03845 140 DAYENSRPVA 149 (157)
T ss_pred HHHhCCCCEE
Confidence 6555545544
No 477
>PRK05957 aspartate aminotransferase; Provisional
Probab=50.26 E-value=1.8e+02 Score=25.58 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=40.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
..|+..++++.+..++..+- +.=.-.|+++...-..-...++..|++++.++.+.++.--.+..++..++....+++..
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~ 168 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTIS 168 (389)
T ss_pred CeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeC
Confidence 45777777777765544432 22122344443222223345678999999987532221112222222233334555544
Q ss_pred CCCCc
Q 027338 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
..||.
T Consensus 169 p~NPt 173 (389)
T PRK05957 169 PNNPT 173 (389)
T ss_pred CCCCC
Confidence 45543
No 478
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=50.16 E-value=65 Score=23.40 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=26.2
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEE
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.++.+..-.+...+--.|..+|++.+++.+...++.-++.++..|.+|+
T Consensus 58 lavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 58 LAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 3444444445555555666667777777777666666666676666654
No 479
>PRK05370 argininosuccinate synthase; Validated
Probab=49.98 E-value=2.1e+02 Score=26.30 Aligned_cols=134 Identities=16% Similarity=0.029 Sum_probs=72.3
Q ss_pred CCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCC------HHHHHHHHHcCC-EEEEeCCCCChH-HHHHHHHHHH
Q 027338 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS------LERRIILRAFGA-ELVLTDPAKGMK-GAVQKAEEIL 139 (224)
Q Consensus 68 ~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~------~~~~~~~~~~Ga-~V~~~~~~~~~~-~~~~~a~~~~ 139 (224)
.|.+.|..+|+|.--.-+...=+..|++++.|.-.--+ ....+....+|| +++.+|-...+. +.. .+.+.-
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i-~aI~an 88 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI-AAIQCG 88 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHH-HHHHcC
Confidence 34466677888775554444344449999888654212 244566788999 688888432222 222 222111
Q ss_pred HhC----CCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEc-cCchhHHHHHHHHHHhcCCCcEEEEE
Q 027338 140 AKT----PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSG-IGTGGTITGAGKFLKEKNPNIKLYGI 208 (224)
Q Consensus 140 ~~~----~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p-vGtGg~~aGi~~~~~~~~~~~~vigv 208 (224)
+-+ .+.|+. .+. -..+. .+....|++++. ..|+|... .|-|--..=.=.+++.+.|+.+||+=
T Consensus 89 A~Y~~~~e~~Y~l-~t~-LaRpl--ia~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaP 156 (447)
T PRK05370 89 AFHISTGGVTYFN-TTP-LGRAV--TGTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKP 156 (447)
T ss_pred CccccccCccccC-CCc-chHHH--HHHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecc
Confidence 100 122221 110 01111 122223455554 46878765 45776676777788888999888763
No 480
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=49.97 E-value=1.2e+02 Score=26.51 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=36.4
Q ss_pred cEEEeecC--CcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHH----HHHcCCEEEEeC
Q 027338 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~--GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~----~~~~Ga~V~~~~ 123 (224)
.+|+-... -|.+.+++..++.+|++++++.|+.- ++..++. .+..|.++...+
T Consensus 156 ~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 156 LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444334 38999999999999999999999853 2333322 345687776665
No 481
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=49.95 E-value=1.8e+02 Score=25.43 Aligned_cols=83 Identities=11% Similarity=0.013 Sum_probs=41.8
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 151 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (224)
.|+..++...+..++..+- ..-.-.|+++.-.-+.-...++.+|++++.++-..+..+.....+....+....+++...
T Consensus 86 ~I~it~G~~~~l~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P 164 (369)
T PRK08153 86 NIMVGEGIDGLLGLIVRLY-VEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANP 164 (369)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCC
Confidence 4666666666655554432 122234555654444444566779999999874322222222222222233456666444
Q ss_pred CCCc
Q 027338 152 ENPA 155 (224)
Q Consensus 152 ~~~~ 155 (224)
.||.
T Consensus 165 ~NPt 168 (369)
T PRK08153 165 DNPM 168 (369)
T ss_pred CCCC
Confidence 5543
No 482
>PRK08267 short chain dehydrogenase; Provisional
Probab=49.91 E-value=1.2e+02 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=26.8
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+.+|++.+|.-|.++|......|.+++++.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 56888999999999999988899987777543
No 483
>PRK07577 short chain dehydrogenase; Provisional
Probab=49.86 E-value=1.3e+02 Score=23.85 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=40.7
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|-.|.++|......|.+++++.+.... ....+++.++-. +.+...+..+++.+
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~D~~-~~~~~~~~~~~~~~ 65 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLGHQVIGIARSAID--------DFPGELFACDLA-DIEQTAATLAQINE 65 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc--------ccCceEEEeeCC-CHHHHHHHHHHHHH
Confidence 67889999999999999999999998887665432 134467766643 23333333444433
No 484
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.77 E-value=1.4e+02 Score=24.80 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHCCCeEEEEEC----CCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 027338 85 LAFMAAAKQYRLIITMP----ASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (224)
Q Consensus 85 lA~~a~~~G~~~~ivvp----~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
+|-...++.=+..++.- ...-..-.+.+...|++|+.+... +...+..+++.++. +.....+.|-.. ...
T Consensus 1 ~~~~~~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~---~~~~~~~~~l~~~~-~~~~~~~~Dl~~--~~~ 74 (272)
T PRK08159 1 MAQASGLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG---DALKKRVEPLAAEL-GAFVAGHCDVTD--EAS 74 (272)
T ss_pred CCcccccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc---hHHHHHHHHHHHhc-CCceEEecCCCC--HHH
Q ss_pred HHhHHHHHHhhhCCCCCEEEEccC
Q 027338 161 YETTGPELWKGSGGRIDALVSGIG 184 (224)
Q Consensus 161 ~~t~~~Ei~~q~~~~~d~iv~pvG 184 (224)
...+..++.++. +++|.+|..+|
T Consensus 75 v~~~~~~~~~~~-g~iD~lv~nAG 97 (272)
T PRK08159 75 IDAVFETLEKKW-GKLDFVVHAIG 97 (272)
T ss_pred HHHHHHHHHHhc-CCCcEEEECCc
No 485
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=49.74 E-value=25 Score=29.73 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=26.2
Q ss_pred EEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 72 ~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
.|+...+|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4788899999999999999999999999664
No 486
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=49.74 E-value=78 Score=27.49 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=40.2
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCe-EEEEECCC-----CCHHHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPAS-----MSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~-~~ivvp~~-----~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|...+|+.|.-+|......|.+ ++++.+.. .....++.++.+|.+++.-.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~ 231 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELV 231 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeecc
Confidence 5688888999999999887888997 88886542 22445667888998887643
No 487
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=49.64 E-value=1.3e+02 Score=23.85 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCCCCCcEEEeecCCcHHH-HHHHHHHHCCCeEEEEECCCCC------HHHHHHHHHcCCEEE
Q 027338 55 SMISDAEAKGLITPGESVLIEPTSGNTGI-GLAFMAAAKQYRLIITMPASMS------LERRIILRAFGAELV 120 (224)
Q Consensus 55 ~~~~~a~~~g~~~~g~~~vv~~s~GN~g~-alA~~a~~~G~~~~ivvp~~~~------~~~~~~~~~~Ga~V~ 120 (224)
.+.....+.|. .+-+|++-..|.+. +.|..+...|++++++.+.... ..-++.|+..|++|+
T Consensus 128 ~L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 128 GLAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred hHHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 34444555665 35566666666665 4677788889999998776332 223667777888774
No 488
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=49.64 E-value=63 Score=27.89 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=34.7
Q ss_pred eecCCcHHHHHHHHHHHCCCeEEEEECCCCC--HHHHH----HHHHcCCEEEEeC
Q 027338 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 123 (224)
Q Consensus 75 ~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~----~~~~~Ga~V~~~~ 123 (224)
.+-.-|.+.+++.+++++|++++++-|.... ...++ ..+..|+++..++
T Consensus 153 vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 153 VGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred EcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 3444677899999999999999999998632 22222 2355788887766
No 489
>PRK07683 aminotransferase A; Validated
Probab=49.58 E-value=1.8e+02 Score=25.50 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=42.3
Q ss_pred CCchhhhHHHHHHHHHHHcCC-CCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Q 027338 45 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|.-..|.+..-.... ..|. +.++ ..|+..+++..+..++..+- ++-.-.|+++...-..-....+..|++++.++
T Consensus 65 ~g~~~lr~~ia~~l~~-~~g~~~~~~-~~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~ 141 (387)
T PRK07683 65 AGLLELRKAACNFVKD-KYDLHYSPE-SEIIVTIGASEAIDIAFRTI-LEPGTEVILPAPIYPGYEPIIRLCGAKPVFID 141 (387)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-CcEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCccchHHHHHHcCCEEEEee
Confidence 3555555444333221 1132 2332 24666666666655554432 22224566676555455666778999999997
Q ss_pred C
Q 027338 124 P 124 (224)
Q Consensus 124 ~ 124 (224)
.
T Consensus 142 ~ 142 (387)
T PRK07683 142 T 142 (387)
T ss_pred c
Confidence 4
No 490
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=49.58 E-value=1.3e+02 Score=26.56 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=40.8
Q ss_pred CeEEEEECCCCCHHHHHHHHHcCC-EEEEeCCCCChH-HHHHHHHHHHHhCCCeE-EcCCC-CCCccHHHHHHhHHHHHH
Q 027338 94 YRLIITMPASMSLERRIILRAFGA-ELVLTDPAKGMK-GAVQKAEEILAKTPNAY-MLQQF-ENPANPKIHYETTGPELW 169 (224)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga-~V~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~g~~t~~~Ei~ 169 (224)
+|..++.-.+.-..--+.++.+|. ++..+.+..... ...+...+..++.+-.+ ..+.. .||.. . ...++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~--~----~v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI--T----NVKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH--H----HHHHHH
Confidence 455666655544444556677774 566665432122 23444444444332122 22221 24432 1 122333
Q ss_pred hhhC-CCCCEEEEccCchhHH
Q 027338 170 KGSG-GRIDALVSGIGTGGTI 189 (224)
Q Consensus 170 ~q~~-~~~d~iv~pvGtGg~~ 189 (224)
+++. .++| +|+++|+|+.+
T Consensus 79 ~~~~~~~~D-~IIavGGGS~i 98 (377)
T cd08176 79 AVFKKEGCD-FIISIGGGSPH 98 (377)
T ss_pred HHHHhcCCC-EEEEeCCcHHH
Confidence 3331 2466 45678888763
No 491
>PRK06849 hypothetical protein; Provisional
Probab=49.57 E-value=1.8e+02 Score=25.57 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=24.9
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~ 102 (224)
+.+|++++.+.+..+|...++.|++++++-..
T Consensus 6 ~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 6 TVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56777777777888888888889888877544
No 492
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=49.41 E-value=1.8e+02 Score=25.46 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHH----HHHcCCEEEEeC
Q 027338 79 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 123 (224)
Q Consensus 79 GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~----~~~~Ga~V~~~~ 123 (224)
.|.+++++.+++.+|+.++++.|+.. +...++. .+..|+++...+
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 58999999999999999999999853 2233322 345777777655
No 493
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=49.36 E-value=35 Score=27.52 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCCCCCCcEEEeecCCc----HHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHHcCCE
Q 027338 64 GLITPGESVLIEPTSGN----TGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~s~GN----~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
|-+.+|...++++..|. .+..+++.+.+. |-+|+.|.-+..+..-++.++.+|.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCc
Confidence 44566667888877766 666667777666 99998887777777888888888863
No 494
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=49.11 E-value=63 Score=27.68 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=45.4
Q ss_pred cCCC-ceEEEEeCCCCCCCchhhhHHHHHHHHHHHcCCCCCCCcEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC
Q 027338 29 NGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (224)
Q Consensus 29 ~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~ 104 (224)
+..| ++-..+.++-...|-+.|-...........-+....+ +.++...+|-+++|++++....|.+-+.|+.++.
T Consensus 85 ~~iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~-~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 85 RLIGAVNTLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTG-KRVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred HHhCCceEEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCC-CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 3455 4544444445566777776554443322111122233 5577777777889999999999986666666554
No 495
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=49.05 E-value=97 Score=28.04 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=73.3
Q ss_pred CCCCchhhhHHHHHHHHHH-HcCCCCCCCcEEEeecCCcHH----HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHcCC
Q 027338 43 EPCSSVKDRIGYSMISDAE-AKGLITPGESVLIEPTSGNTG----IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (224)
Q Consensus 43 ~ptGS~K~R~a~~~~~~a~-~~g~~~~g~~~vv~~s~GN~g----~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (224)
-|||-=|.-....+..... ..++ ..|.--|.-|+= -.|-.+|..+|+|+.++-+...-..-+..++.+
T Consensus 210 GPTGVGKTTTlAKLAar~~~~~~~-----~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~-- 282 (407)
T COG1419 210 GPTGVGKTTTLAKLAARYVMLKKK-----KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC-- 282 (407)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccC-----cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC--
Confidence 5888668777666665554 3332 334444443332 458889999999999998877666677777777
Q ss_pred EEEEeCCCCC--hH-HHHHHHHHHHHhC-C-CeEEcCCCCCCccHHHHHHhHHHHHHhhhCC-CCCEEEEc
Q 027338 118 ELVLTDPAKG--MK-GAVQKAEEILAKT-P-NAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSG 182 (224)
Q Consensus 118 ~V~~~~~~~~--~~-~~~~~a~~~~~~~-~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d~iv~p 182 (224)
++|+||..+. ++ ......+++.... + ..|++-. .......-.||++|+.. ++|.+|..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvls-------at~K~~dlkei~~~f~~~~i~~~I~T 346 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLS-------ATTKYEDLKEIIKQFSLFPIDGLIFT 346 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEe-------cCcchHHHHHHHHHhccCCcceeEEE
Confidence 9999985321 11 1223333333221 0 1122211 11223445689999743 47777775
No 496
>PLN02527 aspartate carbamoyltransferase
Probab=48.93 E-value=1.8e+02 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHC-CCeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Q 027338 79 GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (224)
Q Consensus 79 GN~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++.++..+ |+.++++.|+.- ++..++.++..|.++...+
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46899999998887 999999999863 4445555666777776665
No 497
>PRK13984 putative oxidoreductase; Provisional
Probab=48.84 E-value=74 Score=30.05 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=38.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCC--------------C----HHHHHHHHHcCCEEEE
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVL 121 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~V~~ 121 (224)
..|+...+|..|.+.|...++.|++++++=.... + ...++.++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 4566666999999999999999999998843321 1 2345678889988765
No 498
>PRK12746 short chain dehydrogenase; Provisional
Probab=48.83 E-value=1.4e+02 Score=24.01 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=35.3
Q ss_pred cEEEeecCCcHHHHHHHHHHHCCCeEEEEECCCCCH--HHHHHHHHcCCEEEEeC
Q 027338 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++++|--|.++|......|.++++........ ...+.+...+.++..+.
T Consensus 8 ~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T PRK12746 8 VALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIE 62 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 678899999999999999888898877764443211 11223444455665543
No 499
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=48.78 E-value=29 Score=26.17 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.3
Q ss_pred EEeecCCcHHHHHHHHHHHCCCeEEEEECCCC
Q 027338 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (224)
Q Consensus 73 vv~~s~GN~g~alA~~a~~~G~~~~ivvp~~~ 104 (224)
++...+|.-+.+++..++.+|++++++=|...
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 45678899999999999999999999988743
No 500
>PRK09275 aspartate aminotransferase; Provisional
Probab=48.76 E-value=2.3e+02 Score=26.60 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCCchhhhHHHHHHHHHHHc-CCCCC-CCcEEEeecCCcHHHHHHHHHH----HCCCeEEEEECCCCCHHHHHH--HHHc
Q 027338 44 PCSSVKDRIGYSMISDAEAK-GLITP-GESVLIEPTSGNTGIGLAFMAA----AKQYRLIITMPASMSLERRII--LRAF 115 (224)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~-g~~~~-g~~~vv~~s~GN~g~alA~~a~----~~G~~~~ivvp~~~~~~~~~~--~~~~ 115 (224)
|.|....|-+...-....+. +...+ +...|+..+++..+..++..+- .++=.-.|+++.-.-..-... +..+
T Consensus 133 ~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~ 212 (527)
T PRK09275 133 PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRY 212 (527)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 45777777665542211211 22112 2235777788888777776652 233223445555443333443 3445
Q ss_pred CCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 027338 116 GAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPAN 156 (224)
Q Consensus 116 Ga~V~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (224)
|.+++.++. +.++.-..+..+++.......+++..-+||..
T Consensus 213 ~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG 255 (527)
T PRK09275 213 DLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPS 255 (527)
T ss_pred CeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcC
Confidence 777777752 22232222233333333446667654456643
Done!