RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027338
(224 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 193 bits (491), Expect = 1e-61
Identities = 185/217 (85%), Positives = 199/217 (91%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
S IAKDVTELIGNTPLVYLNN+ GCV R+AAKLEMMEPCSSVKDRIG+SMISDAE KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
I PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRIIL AFG ELVLTDPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
KGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG+GG+ID VSGIGT
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 186 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
GGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPG
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 159 bits (402), Expect = 1e-48
Identities = 108/214 (50%), Positives = 144/214 (67%), Gaps = 9/214 (4%)
Query: 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPG 69
+ LIG+TP+V L++I +RI KLE P SVKDR MI DAE +GL+ G
Sbjct: 2 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 57
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK 129
++EPTSGN GI +A + A + +R+I+TMP +MS+ERR +L+ GAELVLT GMK
Sbjct: 58 ---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMK 114
Query: 130 GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 189
GAV+KA E +++ A+ML QFENP N H TTGPE+ K +IDA V+G+GTGGTI
Sbjct: 115 GAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTI 173
Query: 190 TGAGKFLKEKNPN-IKLYGIEPTESPVLSGGKPG 222
+G G+ LK N +K+ +EP +SPVLSGG+PG
Sbjct: 174 SGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 207
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 160 bits (404), Expect = 3e-48
Identities = 93/219 (42%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 3 VESSNIAKDVTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDA 60
+S I D+ + IG+TP+V +N I G + AK E SVKDRI MI DA
Sbjct: 29 AKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDA 88
Query: 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120
E G + P +IEPTSGNTGIGLA AA + YR II MP MS E+ +LRA GAE+V
Sbjct: 89 ERDGTLKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIV 147
Query: 121 LTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRID 177
T + V A + + PN+++L Q+ N +NP HY+TT E+ + G++D
Sbjct: 148 RTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 207
Query: 178 ALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 216
LV+ +GTGGTITG + LKEK P ++ G++P S +
Sbjct: 208 MLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILA 246
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 156 bits (394), Expect = 3e-47
Identities = 108/219 (49%), Positives = 146/219 (66%), Gaps = 5/219 (2%)
Query: 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLIT 67
I D + IGNTPLV L + + + K+E P SVK RIG +M+ AE G +T
Sbjct: 2 IYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 59
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 127
G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +L G LVLT+ AKG
Sbjct: 60 KG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 118
Query: 128 MKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186
MKGA+ KAEEI+A P+ ML+QFENPANP+IH ETTGPE+WK + G++D +V+G+GTG
Sbjct: 119 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 178
Query: 187 GTITGAGKFLKE-KNPNIKLYGIEPTESPVLSGGKPGIE 224
G+ITG + +K I +EP ESPV+S G E
Sbjct: 179 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEE 217
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 149 bits (377), Expect = 8e-45
Identities = 109/210 (51%), Positives = 147/210 (70%), Gaps = 5/210 (2%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
S I +D + IG+TPLV LN I N RI AK+E P SVK RIG +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGN---GRILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
+ PG L+EPT+GNTGI LA++AAA+ Y+L +TMP +MS+ERR +L+A GA LVLT+ A
Sbjct: 58 LKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 KGMKGAVQKAEEILAKT-PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 184
KGMKGA+QKAEEI+A +LQQF NPANP+IH +TTGPE+W+ + G++D +SG+G
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 TGGTITGAGKFLKEKNPNIKLYGIEPTESP 214
TGGT+TG +++K L + +
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTD 206
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 148 bits (373), Expect = 3e-44
Identities = 115/212 (54%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPG-E 70
V IG TP+V L +V +A + KLE + P S+KDR + MI DAE +G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG 130
V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+ +L+AFGAELVLTDP + M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 190
A ++A + + A+M QF+NPAN + HYETTGPEL++ GRIDA V G GTGGTIT
Sbjct: 123 AREEALRL-KEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
G G++LKE+ P++K+ +EP S VLSGGK G
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMG 213
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 133 bits (335), Expect = 1e-38
Identities = 95/210 (45%), Positives = 131/210 (62%), Gaps = 2/210 (0%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGES 71
+ + IGNTPLV L + + + KLE P SVKDR SMI +AE +G I PG+
Sbjct: 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 62
Query: 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGA 131
+ IE TSGNTGI LA +AA K YR+ + MP +MS ERR +RA+GAEL+L +GM+GA
Sbjct: 63 L-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 121
Query: 132 VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITG 191
+ +A +L QF NP NP HY TTGPE+W+ +GGRI VS +GT GTITG
Sbjct: 122 -RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 180
Query: 192 AGKFLKEKNPNIKLYGIEPTESPVLSGGKP 221
+F++E++ + + G++P E + G +
Sbjct: 181 VSRFMREQSKPVTIVGLQPEEGSSIPGIRR 210
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 111 bits (278), Expect = 6e-30
Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 9/211 (4%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGES 71
V E TPL + + + I K E +P S K R Y+M++ +
Sbjct: 21 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ----KAH 76
Query: 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGA 131
+I ++GN G+AF +A + +I MP + + + +R FG E++L A
Sbjct: 77 GVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKA 136
Query: 132 VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITG 191
L++ + F++P I + T +D + +G GG G
Sbjct: 137 KA---IELSQQQGFTWVPPFDHP--MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAG 191
Query: 192 AGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
+K+ P IK+ +E +S L
Sbjct: 192 VAVLIKQLMPQIKVIAVEAEDSACLKAALDA 222
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 112 bits (280), Expect = 6e-30
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 11/217 (5%)
Query: 11 DVTELIGNTPLVYLNNIV-NGCVARIAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITP 68
D E TPLV + NG R+ KLE P S SVKDR +IS + +
Sbjct: 88 DFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEK 143
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 128
G S++ + TS N G+ L+ +A YR + +P + +++ R GA++++ A
Sbjct: 144 G-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPST 202
Query: 129 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK---GSGGRIDALVSGIGT 185
+ + + +K + QF N AN + H T E++ G + + +GT
Sbjct: 203 VHLLPRVMKD-SKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGT 261
Query: 186 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
G ++ A +L+ +P+I+ ++P + + G +
Sbjct: 262 SGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRV 298
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 104 bits (260), Expect = 2e-27
Identities = 37/199 (18%), Positives = 84/199 (42%), Gaps = 9/199 (4%)
Query: 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITP 68
++ + + TP++ + + VA + K E + + K R + +S
Sbjct: 12 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEA----Q 67
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 128
++ ++ +SGN +A A I MP + + +G ++++ D K
Sbjct: 68 RKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDD 127
Query: 129 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 188
+ + K +++ ++ +++P + T EL++ G +DAL +G GG
Sbjct: 128 REKMAKE---ISEREGLTIIPPYDHP-HVLAGQGTAAKELFE-EVGPLDALFVCLGGGGL 182
Query: 189 ITGAGKFLKEKNPNIKLYG 207
++G+ + PN ++YG
Sbjct: 183 LSGSALAARHFAPNCEVYG 201
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 92.4 bits (228), Expect = 6e-23
Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 23/227 (10%)
Query: 12 VTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSV---KDRIGYSMISDAEAKGLI 66
G TP+ L + G + AK E + K R +I +A A+G
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL------- 119
T V I N +A +AA + ++ ++ + R ++
Sbjct: 69 TL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGAD 125
Query: 120 ---VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW-----KG 171
V G + + + A E + +P G
Sbjct: 126 VRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAE 185
Query: 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG 218
G + D +V TG T G ++ G++ + P +
Sbjct: 186 LGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTR 232
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 82.7 bits (203), Expect = 2e-19
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 12/208 (5%)
Query: 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITP 68
+ + TPL+ + R+ K E ++ S K R S E
Sbjct: 10 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE------- 62
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 128
L+ +SGN G+A+ A + ++ MP S ++ RA+GAE+V
Sbjct: 63 NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKN 122
Query: 129 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW--KGSGGRIDALVSGIGTG 186
+ V +A + + ++ F++P L G A+++ +G G
Sbjct: 123 REEVARALQ---EETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGG 179
Query: 187 GTITGAGKFLKEKNPNIKLYGIEPTESP 214
G + G +K +P + G+EP +
Sbjct: 180 GLLAGLATAVKALSPTTLVLGVEPEAAD 207
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 83.5 bits (205), Expect = 3e-19
Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 5/193 (2%)
Query: 12 VTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPG 69
V+ GN+ L + + + K + S KD ++S +
Sbjct: 115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 174
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK 129
+ ++G+T L+ A+ I+ +PA+ +++ +
Sbjct: 175 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQLVQPIANGAFVLSIDTDFD 233
Query: 130 GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 189
G ++ EI L N + L + D ++ G G I
Sbjct: 234 GCMKLIREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNI 291
Query: 190 TGAGKFLKEKNPN 202
K K
Sbjct: 292 YAFYKGFKMCQEL 304
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 81.6 bits (200), Expect = 6e-19
Identities = 29/232 (12%), Positives = 60/232 (25%), Gaps = 26/232 (11%)
Query: 12 VTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSV---KDRIGYSMISDAEAKGLI 66
G +P+ LN + G + AK E + K R ++ D
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT 68
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
V I N +A +AA + ++ + + +
Sbjct: 69 HL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125
Query: 127 G-------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH-----YETTGPEL 168
G M+ + A + L + + +
Sbjct: 126 GADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK 220
G + D +V TG T G + + + I+ + + + +
Sbjct: 186 EVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 80.9 bits (198), Expect = 1e-18
Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 9/216 (4%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMM--EPCSSVKDRIGYSMISDAEAKGLITPG 69
V + TP+ YL NI A + K + + K R ++ DA +KG
Sbjct: 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVV- 73
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK 129
+ + N A I+ + L+ +L AK
Sbjct: 74 --ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSF 131
Query: 130 GAVQKAEEI----LAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
++ AEEI + Y++ + Y E+ S + D++V G+
Sbjct: 132 ELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGS 191
Query: 186 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP 221
GGT+ G L N +I+ GI + K
Sbjct: 192 GGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKL 227
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 76.4 bits (186), Expect = 4e-17
Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 7/192 (3%)
Query: 15 LIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI 74
L TP+ + + K++ +P S K R +G +
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH-----FV 58
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK 134
++GN G+ A+ A I +P + L+ GA + +
Sbjct: 59 CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAF--EL 116
Query: 135 AEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGK 194
A+ + P + F++P + H +S G G
Sbjct: 117 AKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQG 176
Query: 195 FLKEKNPNIKLY 206
+ ++ +
Sbjct: 177 LQECGWGDVPVI 188
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 73.7 bits (180), Expect = 4e-16
Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 18/218 (8%)
Query: 19 TPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPT 77
TPL Y + A+I K E + + K A+ G ++ E
Sbjct: 51 TPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTR----LIAETG 106
Query: 78 SGNTGIGLAFMAAAKQYRLIITMPA---SMSLERRIILRAFGAELVLTDP-AKGMKGAVQ 133
+G G+ A A ++ I M A ++ GA ++ + ++ +K A+
Sbjct: 107 AGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAIN 166
Query: 134 KAEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDALVSGIG 184
+A T ++ P + G E + G++ ++
Sbjct: 167 EALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACV 226
Query: 185 TGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 222
GG+ + + +KL G+E + SG
Sbjct: 227 GGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSA 264
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 69.4 bits (168), Expect = 1e-14
Identities = 39/219 (17%), Positives = 65/219 (29%), Gaps = 17/219 (7%)
Query: 12 VTELIGNTPLVYLNNIV--NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPG 69
++ L G+TPL+ L R+ AK E + P S KDR +S A G
Sbjct: 22 ISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAV- 80
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK 129
++GNT A AA I+ +PA ++ ++
Sbjct: 81 ----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDD 136
Query: 130 GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 189
+ + + +T E+ G +G G I
Sbjct: 137 ALRLTQKLT----EAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI 192
Query: 190 TGAGKFLKEK------NPNIKLYGIEPTESPVLSGGKPG 222
T K ++ G + + L G+P
Sbjct: 193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPV 231
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 66.4 bits (161), Expect = 1e-13
Identities = 38/214 (17%), Positives = 63/214 (29%), Gaps = 17/214 (7%)
Query: 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTS 78
T L NI G + K E + + K A+ G E +
Sbjct: 56 TALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEII----AETGA 111
Query: 79 GNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGMKGAVQK 134
G G+ A +A + I M A +R GAE++ + +K A +
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNE 171
Query: 135 AEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDALVSGIGT 185
A + + P + G E GR+ V
Sbjct: 172 ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVG 231
Query: 186 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG 219
GG+ + ++ L G+EP + +G
Sbjct: 232 GGSNAIGMFADFINDTSVGLIGVEPGGHGIETGE 265
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 28.0 bits (61), Expect = 0.67
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 53 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 112
GY + + PG + G + A R+I ++ ++
Sbjct: 16 GYGAAVNT---AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD---INKDKFARA 69
Query: 113 RAFG 116
+ FG
Sbjct: 70 KEFG 73
>d1xvha1 a.8.1.2 (A:3-72) Ebh protein {Staphylococcus aureus [TaxId:
1280]}
Length = 70
Score = 26.2 bits (58), Expect = 0.77
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 131 AVQKAEEILAKTPNAYMLQQ 150
AV AE IL K +
Sbjct: 35 AVSAAETILNKQTGPNTAKT 54
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus
callarias) [TaxId: 8053]}
Length = 175
Score = 26.5 bits (57), Expect = 1.9
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120
+ PG + + + +A R+I ++ ++ + FGA
Sbjct: 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD---LNPDKFEKAKVFGATDF 77
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus
subtilis [TaxId: 1423]}
Length = 167
Score = 26.5 bits (57), Expect = 2.0
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 114
E GL SVL+ +G G M + Y ++ + + + L A
Sbjct: 16 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA 69
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 26.5 bits (57), Expect = 2.4
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 171 GSGGRIDALVSGIGTGGTITGAG---------KFLKEKNPNIK 204
+GGR D LV +G G G ++ NP K
Sbjct: 280 CAGGRYDGLVEQLG-GRATPAVGFAMGLERLVLLVQAVNPEFK 321
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 26.0 bits (56), Expect = 4.0
Identities = 8/65 (12%), Positives = 13/65 (20%)
Query: 21 LVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGN 80
L I + V ++ + V P S
Sbjct: 156 LARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAY 215
Query: 81 TGIGL 85
TG +
Sbjct: 216 TGQNV 220
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus
musculus), class II [TaxId: 10090]}
Length = 174
Score = 25.3 bits (54), Expect = 4.7
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 116
+TPG + + G +GL+ + K + ++ E+ +A G
Sbjct: 23 TAKVTPGSTCAV---FGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 73
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus
caballus) [TaxId: 9796]}
Length = 176
Score = 25.0 bits (53), Expect = 6.2
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 116
+T G + + G + AA R+I ++ ++ + G
Sbjct: 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD---INKDKFAKAKEVG 73
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD,
C-terminal domain {Clostridium aminobutyricum [TaxId:
33953]}
Length = 215
Score = 24.8 bits (54), Expect = 9.8
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 17/77 (22%)
Query: 48 VKDRIG---------YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRL-- 96
VKD++ Y A+G T + I+ N + RL
Sbjct: 51 VKDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAE 110
Query: 97 ------IITMPASMSLE 107
++TMP+ +
Sbjct: 111 DIAGGLMVTMPSEADFK 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.377
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 813,221
Number of extensions: 37466
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 31
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.2 bits)