Query 027339
Match_columns 224
No_of_seqs 131 out of 838
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xtc_A F-box-like/WD repeat-co 95.7 0.011 3.8E-07 41.0 3.9 35 18-52 1-35 (90)
2 1uuj_A Platelet-activating fac 95.5 0.014 4.9E-07 40.2 4.0 54 22-81 10-63 (88)
3 1vyh_C Platelet-activating fac 87.8 0.1 3.4E-06 45.0 0.0 54 22-81 8-61 (410)
4 2d68_A FOP, FGFR1OP; alpha hel 85.9 0.92 3.1E-05 30.7 3.9 31 23-53 19-49 (82)
5 2nxp_A Transcription initiatio 82.8 2.6 9E-05 31.8 5.8 80 78-160 34-113 (156)
6 2j4b_A TAF5, transcription ini 70.0 7.9 0.00027 28.5 5.2 62 78-144 15-77 (138)
7 2j49_A Transcription initiatio 60.4 4.6 0.00016 30.3 2.2 62 79-144 18-79 (148)
8 2y4t_A DNAJ homolog subfamily 56.6 83 0.0029 26.0 10.2 59 66-125 264-322 (450)
9 2xz2_A CSTF-50, isoform B; RNA 55.6 14 0.0005 23.6 3.6 33 21-53 15-47 (66)
10 3mkr_A Coatomer subunit epsilo 45.6 1.1E+02 0.0039 24.3 10.1 91 22-125 64-157 (291)
11 2xpi_A Anaphase-promoting comp 43.2 1.6E+02 0.0055 25.3 10.5 63 63-125 154-227 (597)
12 3q15_A PSP28, response regulat 40.0 66 0.0023 26.4 6.6 30 19-48 6-37 (378)
13 2vxg_A LD41624, GE-1, CG6181-P 37.3 1.2E+02 0.0041 22.2 7.2 26 63-88 4-30 (139)
14 2v5f_A Prolyl 4-hydroxylase su 34.2 99 0.0034 20.3 6.2 59 67-125 13-73 (104)
15 3sxm_A Transcriptional regulat 34.2 47 0.0016 23.2 4.2 31 57-87 97-127 (140)
16 3ieg_A DNAJ homolog subfamily 32.8 1.7E+02 0.0059 22.7 12.1 61 21-84 152-213 (359)
17 1whc_A RSGI RUH-027, UBA/UBX 3 32.5 49 0.0017 20.7 3.5 17 72-88 35-51 (64)
18 2cp9_A EF-TS, EF-TSMT, elongat 32.3 24 0.00081 22.4 1.9 20 66-85 27-48 (64)
19 3u4t_A TPR repeat-containing p 31.4 1.6E+02 0.0056 22.0 9.2 101 20-125 1-101 (272)
20 1oyi_A Double-stranded RNA-bin 31.1 18 0.00063 24.2 1.3 47 21-75 14-60 (82)
21 2y4t_A DNAJ homolog subfamily 31.0 2.2E+02 0.0075 23.3 10.5 112 7-126 11-122 (450)
22 2eap_A Lymphocyte cytosolic pr 30.2 37 0.0013 23.0 2.7 24 28-52 26-49 (90)
23 2dna_A Unnamed protein product 29.1 65 0.0022 20.6 3.6 26 63-88 34-61 (67)
24 3u3w_A Transcriptional activat 28.5 2.1E+02 0.0071 22.3 8.5 87 39-126 46-143 (293)
25 3t5x_A PCI domain-containing p 26.4 68 0.0023 24.8 4.1 73 11-93 37-113 (203)
26 2knz_A Ubiquilin-4; cytoplasm, 25.7 84 0.0029 18.7 3.6 16 71-86 36-51 (53)
27 2xpi_A Anaphase-promoting comp 25.5 3.2E+02 0.011 23.4 12.5 95 22-124 407-501 (597)
28 4a18_Q RPL36, 60S ribosomal pr 24.5 66 0.0023 22.4 3.2 32 98-129 51-85 (104)
29 3mkq_A Coatomer beta'-subunit; 23.6 3.1E+02 0.01 24.7 8.6 51 22-86 629-679 (814)
30 1k8k_G P16, ARP2/3 complex 16 23.3 72 0.0025 23.8 3.5 26 63-88 39-64 (151)
31 2ho1_A Type 4 fimbrial biogene 23.0 2.3E+02 0.0079 20.9 13.1 16 69-84 115-130 (252)
32 3dwl_G Actin-related protein 2 22.9 38 0.0013 25.4 1.8 26 63-88 40-65 (152)
33 2vq2_A PILW, putative fimbrial 22.7 2.1E+02 0.0072 20.3 12.4 98 23-126 42-141 (225)
34 2dba_A Smooth muscle cell asso 20.8 1.9E+02 0.0064 19.0 11.8 98 24-126 30-127 (148)
35 3vtx_A MAMA; tetratricopeptide 20.8 2.2E+02 0.0076 19.9 10.3 18 108-125 117-134 (184)
36 2ekk_A UBA domain from E3 ubiq 20.7 71 0.0024 18.4 2.4 15 71-85 32-46 (47)
37 1bpo_A Protein (clathrin); cla 20.6 2E+02 0.0069 25.7 6.3 103 17-126 326-441 (494)
38 3iko_C Nucleoporin NUP84; NPC, 20.4 68 0.0023 28.4 3.3 26 61-86 179-204 (460)
39 1vek_A UBP14, ubiquitin-specif 20.2 1.1E+02 0.0036 20.3 3.5 25 64-88 44-71 (84)
No 1
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.66 E-value=0.011 Score=40.97 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 027339 18 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 52 (224)
Q Consensus 18 ~~~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~ 52 (224)
++++.+++|.||..||...||..||-+|.+|+++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 35788999999999999999999999999998875
No 2
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.50 E-value=0.014 Score=40.19 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027339 22 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 81 (224)
Q Consensus 22 ~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~ 81 (224)
+.+|++-|++||...||.+++.+|.+|+++... +. . . .....+++.+|...+.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~-~~-~--~--~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN-EE-L--D--KKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC-HH-H--H--HHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC-ch-h--h--hhhhhhhhhhHHHHHHH
Confidence 468999999999999999999999999987753 11 1 1 13445666677666544
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=87.83 E-value=0.1 Score=45.03 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027339 22 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 81 (224)
Q Consensus 22 ~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~ 81 (224)
+++++++|++||..+||.+++.+|.+|.++..... .......+.++.|+..+..
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence 56799999999999999999999999998754221 1233455677777776654
No 4
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=85.88 E-value=0.92 Score=30.70 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 027339 23 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 53 (224)
Q Consensus 23 ~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~ 53 (224)
..++.||.+||...||.=|...|..|+|...
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 5588999999999999999999999999863
No 5
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=82.76 E-value=2.6 Score=31.83 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=51.2
Q ss_pred HHHHHHhcCchhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCCCCCchh
Q 027339 78 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG 157 (224)
Q Consensus 78 Ai~~~~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~~sp~~ 157 (224)
-..|++..-......-..+.|=+.++-|++||.+|...+|-.|..++-.-+.. .+.++++++.++..-....+.+..
T Consensus 34 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~---~~~~~i~~L~~i~~~~~l~~n~~~ 110 (156)
T 2nxp_A 34 LKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC---YYQDDLRVLSSLTKKEHMKGNETM 110 (156)
T ss_dssp HHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG---GGHHHHHHHHTCCSHHHHTTCGGG
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHH---HHHHHHHHHhcCCCHHHHhhcHHH
Confidence 35677653222222226789999999999999999999999999977655543 335667765554433333334444
Q ss_pred hhc
Q 027339 158 DLL 160 (224)
Q Consensus 158 ~l~ 160 (224)
..+
T Consensus 111 ~~f 113 (156)
T 2nxp_A 111 LDF 113 (156)
T ss_dssp GGG
T ss_pred HHH
Confidence 433
No 6
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=70.01 E-value=7.9 Score=28.55 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=42.1
Q ss_pred HHHHHHhcCchhhh-ccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhh
Q 027339 78 AIEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 144 (224)
Q Consensus 78 Ai~~~~~~~~~l~~-~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~ 144 (224)
-.+|++.. +++.+ .-..+.|=+.++-|++||.+|...+|-.|..++-.-+... .++++++.+
T Consensus 15 L~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~----~~~i~~L~~ 77 (138)
T 2j4b_A 15 LKTWIEDS-LDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK----SEEIKQFES 77 (138)
T ss_dssp HHHHHHHS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C----HHHHHHHTT
T ss_pred HHHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH----HHHHHHHhc
Confidence 35677653 22222 2267899999999999999999999999998765555322 445555443
No 7
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=60.36 E-value=4.6 Score=30.28 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=40.3
Q ss_pred HHHHHhcCchhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhh
Q 027339 79 IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 144 (224)
Q Consensus 79 i~~~~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~ 144 (224)
..|++..-......-..+.|=+.++-|++||.+| ..+|-.|..++-.-+. +...++++++.+
T Consensus 18 r~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~---~~~~~~i~~L~~ 79 (148)
T 2j49_A 18 KNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK---DFHGSEINRLFS 79 (148)
T ss_dssp HHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH---HHHHHHHHTTTT
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH---HHHHHHHHHHhc
Confidence 5676653211111125689999999999999999 9999999987654442 223445554333
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=56.61 E-value=83 Score=25.96 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=30.1
Q ss_pred HHHHHHcCCHHHHHHHHHhcCchhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhc
Q 027339 66 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125 (224)
Q Consensus 66 I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l 125 (224)
..-+...|++++|+.++++.-. +...++.....++...-.-+.+.|+..+|+.+.++-+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3446677888888887765321 1111111112222222223445677777777777644
No 9
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=55.63 E-value=14 Score=23.59 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 027339 21 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 53 (224)
Q Consensus 21 ~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~ 53 (224)
+|+.|=+||..-|..-||...|..|.+..+..+
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 367889999999999999999999999988664
No 10
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=45.59 E-value=1.1e+02 Score=24.26 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHhCHHH-HHHHHHHHh--CCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchh
Q 027339 22 KEDMNKLVMNFLVTEGYVD-AAEKFRMES--GTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF 98 (224)
Q Consensus 22 ~~~l~~lI~~yL~~~Gy~~-ta~~l~~e~--~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F 98 (224)
......++++|+...|-.+ +...|.+-. +..|. +.... ...-.-....|++++|++++++ |. ...
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-~~~~~--~~la~~~~~~g~~~~Al~~l~~--~~------~~~- 131 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTFL--LMAASIYFYDQNPDAALRTLHQ--GD------SLE- 131 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHHH--HHHHHHHHHTTCHHHHHHHHTT--CC------SHH-
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC-CHHHH--HHHHHHHHHCCCHHHHHHHHhC--CC------CHH-
Confidence 3344567778888877444 444444422 22232 22111 1111335577888888888876 21 111
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhc
Q 027339 99 HLQQQRLIELIRNGKVEEALEFAQEEL 125 (224)
Q Consensus 99 ~L~~q~fiEli~~~~~~~Al~~~r~~l 125 (224)
.+...-.=+.+.|+.++|++..++-+
T Consensus 132 -~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 132 -CMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11111122456678888888777643
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=43.21 E-value=1.6e+02 Score=25.33 Aligned_cols=63 Identities=19% Similarity=0.070 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCchhhh-----------ccccchhchHHHHHHHHHhcCChHHHHHHHHHhc
Q 027339 63 RMAVKKAVQCGNVEDAIEKVNDLNPEILD-----------TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125 (224)
Q Consensus 63 r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~-----------~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l 125 (224)
...+.-....|++++|++.+++..|.-.. .........+...-.-+.+.|+..+|+++.++-+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455567788888888888764443200 0000111222222223556788999998887654
No 12
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=39.96 E-value=66 Score=26.37 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHH--HHhCHHHHHHHHHHH
Q 027339 19 KIRKEDMNKLVMNFL--VTEGYVDAAEKFRME 48 (224)
Q Consensus 19 ~~~~~~l~~lI~~yL--~~~Gy~~ta~~l~~e 48 (224)
.+....+..+|-+|- +..+-.+.|..+.++
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 355667777777765 666767777666665
No 13
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=37.35 E-value=1.2e+02 Score=22.15 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHhcCch
Q 027339 63 RMAVKKAVQCGNVEDAI-EKVNDLNPE 88 (224)
Q Consensus 63 r~~I~~~I~~g~~~~Ai-~~~~~~~~~ 88 (224)
+.+|.+++.+|++++|. .|++...-.
T Consensus 4 ~~~I~~Ll~~g~~eeAf~~aL~ssd~~ 30 (139)
T 2vxg_A 4 GDSIKQLLMAGQINKAFHQALLANDLG 30 (139)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhCcHH
Confidence 66799999999999994 566654433
No 14
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=34.23 E-value=99 Score=20.31 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=35.0
Q ss_pred HHHHHcCCHHHHHHHHHhcCchhhhcc--ccchhchHHHHHHHHHhcCChHHHHHHHHHhc
Q 027339 67 KKAVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125 (224)
Q Consensus 67 ~~~I~~g~~~~Ai~~~~~~~~~l~~~~--~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l 125 (224)
..+...|++..|+.|.+.-........ ..-.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 346688999999999986432221111 01112222222233557789999999888754
No 15
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=34.19 E-value=47 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHhcCc
Q 027339 57 LATITDRMAVKKAVQCGNVEDAIEKVNDLNP 87 (224)
Q Consensus 57 ~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~ 87 (224)
...+.+-..|.++|.+||.+.|.+.+..|-.
T Consensus 97 ~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~ 127 (140)
T 3sxm_A 97 VVSNREHKELIERIISGDKEGAIEKLKEHLK 127 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778889999999999999888877643
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=32.79 E-value=1.7e+02 Score=22.67 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHHhCHHHHH-HHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 027339 21 RKEDMNKLVMNFLVTEGYVDAA-EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 84 (224)
Q Consensus 21 ~~~~l~~lI~~yL~~~Gy~~ta-~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~ 84 (224)
+.......++..+...|-.+.| ..|.+-....+. +.+.. ...-.-....|+++.|+.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~--~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAF--YKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHH--HHHHHHHHHHTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH--HHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444455555555544333 334333343332 22222 1222223445666666655543
No 17
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.53 E-value=49 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.226 Sum_probs=13.9
Q ss_pred cCCHHHHHHHHHhcCch
Q 027339 72 CGNVEDAIEKVNDLNPE 88 (224)
Q Consensus 72 ~g~~~~Ai~~~~~~~~~ 88 (224)
+|+++.|++|+-.+.+.
T Consensus 35 ~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 35 NQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp SCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 57899999999887654
No 18
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=32.29 E-value=24 Score=22.45 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.1
Q ss_pred HHHHH--HcCCHHHHHHHHHhc
Q 027339 66 VKKAV--QCGNVEDAIEKVNDL 85 (224)
Q Consensus 66 I~~~I--~~g~~~~Ai~~~~~~ 85 (224)
.++++ .+||++.|+.|+.+.
T Consensus 27 cKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 27 CKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 44544 468999999999864
No 19
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=31.35 E-value=1.6e+02 Score=21.98 Aligned_cols=101 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhc
Q 027339 20 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFH 99 (224)
Q Consensus 20 ~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~ 99 (224)
.+.+.+...-..|+...-|.++...|.+-....+......+.... -....|+++.|+..+++.-. ...++.....
T Consensus 1 ~n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~---~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~ 75 (272)
T 3u4t_A 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV---CYYELAKYDLAQKDIETYFS--KVNATKAKSA 75 (272)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH---HHHHTTCHHHHHHHHHHHHT--TSCTTTCCHH
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH---HHHHHhhHHHHHHHHHHHHh--ccCchhHHHH
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhc
Q 027339 100 LQQQRLIELIRNGKVEEALEFAQEEL 125 (224)
Q Consensus 100 L~~q~fiEli~~~~~~~Al~~~r~~l 125 (224)
.+...-.-+...|+..+|+.+.++-+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
No 20
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=31.12 E-value=18 Score=24.15 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCH
Q 027339 21 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNV 75 (224)
Q Consensus 21 ~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~ 75 (224)
+-..+.+-|+++|...| -++..++++.|+... .-|+++..+-.+|-+
T Consensus 14 ~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~------aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR------EVNKALYDLQRSAMV 60 (82)
T ss_dssp CSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH------HHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH------HHHHHHHHHHHCCCE
Confidence 45567777889999999 899999999997642 236667777666654
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=30.95 E-value=2.2e+02 Score=23.27 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=57.4
Q ss_pred CHHHHHHHHhcCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 027339 7 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 86 (224)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~ 86 (224)
....|.+.+..-+.+...+..+...|+...-|.++...|.+-....+. +... ......-....|++++|+..+.+.-
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~--~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIA--YYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH--HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHH--HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566666554444455555655565555566666667665544442 2222 2334555778899999999887532
Q ss_pred chhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhcC
Q 027339 87 PEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 126 (224)
Q Consensus 87 ~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~ 126 (224)
+.++.. ...+...-.-+...|+..+|+.+.++-+.
T Consensus 88 ----~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 88 ----QLKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp ----HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----hcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222211 11222222224567899999999887654
No 22
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.24 E-value=37 Score=23.03 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.0
Q ss_pred HHHHHHHHhCHHHHHHHHHHHhCCC
Q 027339 28 LVMNFLVTEGYVDAAEKFRMESGTE 52 (224)
Q Consensus 28 lI~~yL~~~Gy~~ta~~l~~e~~~~ 52 (224)
-|++||-..||.+ ++.|++...+.
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHcCCch-HHHHHHHhccC
Confidence 5899999999999 89998766554
No 23
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.07 E-value=65 Score=20.58 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=17.8
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHhcCch
Q 027339 63 RMAVKKAV--QCGNVEDAIEKVNDLNPE 88 (224)
Q Consensus 63 r~~I~~~I--~~g~~~~Ai~~~~~~~~~ 88 (224)
+....+++ ..||++.|++|+-.+.+.
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 34434443 368999999999877653
No 24
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=28.54 E-value=2.1e+02 Score=22.26 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCC--------CCCHHhHHH-HHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhchHHHHHHH--
Q 027339 39 VDAAEKFRMESGTEP--------DIDLATITD-RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE-- 107 (224)
Q Consensus 39 ~~ta~~l~~e~~~~~--------~~~~~~~~~-r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~L~~q~fiE-- 107 (224)
.++...+++..|+++ ..+.+.... ...+...+..|+++.|+..+++.-... ...+.....+.....+-
T Consensus 46 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~ 124 (293)
T 3u3w_A 46 MDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHH
Confidence 356666666666653 112333322 345788899999999999987632110 11111111111111111
Q ss_pred HHhcCChHHHHHHHHHhcC
Q 027339 108 LIRNGKVEEALEFAQEELA 126 (224)
Q Consensus 108 li~~~~~~~Al~~~r~~l~ 126 (224)
....++..+|+.+.++-+.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHH
Confidence 2345688999999988765
No 25
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.39 E-value=68 Score=24.83 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHhcCCCChHHHHHHHHHHH----HHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 027339 11 WEKKLNDVKIRKEDMNKLVMNFL----VTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 86 (224)
Q Consensus 11 ~~~~~~~~~~~~~~l~~lI~~yL----~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~ 86 (224)
+..++.+.+.+...-.+.|+-|| +-.|...+...|.+ .+.. ....+.+++..||+..--++++++.
T Consensus 37 L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~-~~~~---------~y~~L~~Avr~Gdl~~f~~~l~~~~ 106 (203)
T 3t5x_A 37 LSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKK-YHLM---------QFAEVTRAVSEGNLLLLHEALAKHE 106 (203)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHH-TTCG---------GGHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhh-Cchh---------HHHHHHHHHHhCCHHHHHHHHHHhH
Confidence 44555555555444556777787 44555444444432 2211 2356888999999999999988876
Q ss_pred chhhhcc
Q 027339 87 PEILDTN 93 (224)
Q Consensus 87 ~~l~~~~ 93 (224)
..+.+.+
T Consensus 107 ~~f~~~~ 113 (203)
T 3t5x_A 107 AFFIRCG 113 (203)
T ss_dssp HHHHHHT
T ss_pred HHHHHCC
Confidence 6555543
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=25.67 E-value=84 Score=18.71 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.8
Q ss_pred HcCCHHHHHHHHHhcC
Q 027339 71 QCGNVEDAIEKVNDLN 86 (224)
Q Consensus 71 ~~g~~~~Ai~~~~~~~ 86 (224)
..||++.|++|+-.+.
T Consensus 36 t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 36 TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HTSCHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHcC
Confidence 5679999999987654
No 27
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=25.51 E-value=3.2e+02 Score=23.37 Aligned_cols=95 Identities=11% Similarity=-0.028 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhchH
Q 027339 22 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 101 (224)
Q Consensus 22 ~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~L~ 101 (224)
......++.-|....-+.++...|.+-....+.. ... ......-+...|++++|++++++.. +.++. ....+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~ 478 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-HLP--YLFLGMQHMQLGNILLANEYLQSSY----ALFQY-DPLLL 478 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-SHH--HHHHHHHHHHHTCHHHHHHHHHHHH----HHCCC-CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHH--HHHHHHHHHHcCCHHHHHHHHHHHH----HhCCC-ChHHH
Confidence 3444555555544444455555555544443321 111 1233444566788888877776532 11111 00112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 027339 102 QQRLIELIRNGKVEEALEFAQEE 124 (224)
Q Consensus 102 ~q~fiEli~~~~~~~Al~~~r~~ 124 (224)
..--.-+.+.|+.++|+++.++-
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 22222234567777777776654
No 28
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=24.50 E-value=66 Score=22.42 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=26.4
Q ss_pred hchHHHHHHHHHhcCC---hHHHHHHHHHhcCCCC
Q 027339 98 FHLQQQRLIELIRNGK---VEEALEFAQEELAPRG 129 (224)
Q Consensus 98 F~L~~q~fiEli~~~~---~~~Al~~~r~~l~p~~ 129 (224)
|-=+..+.+||++.+. -..|+.|+++.+..+.
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~ 85 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHR 85 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHH
Confidence 4456678899999998 7899999999987764
No 29
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=23.65 E-value=3.1e+02 Score=24.69 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 027339 22 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 86 (224)
Q Consensus 22 ~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~ 86 (224)
...+ .-++.||...|+.+.|..+.++ ...+...++..|+++.|.+.+....
T Consensus 629 ~~~~-~~~~~~l~~~~~~~~a~~~~~~-------------~~~~f~~~l~~~~~~~A~~~~~~~~ 679 (814)
T 3mkq_A 629 KDSL-TKIARFLEGQEYYEEALNISPD-------------QDQKFELALKVGQLTLARDLLTDES 679 (814)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHCCC-------------HHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hHHH-HHHHHHHHhCCChHHheecCCC-------------cchheehhhhcCCHHHHHHHHHhhC
Confidence 4444 7777899999999888877532 2345667899999999999987654
No 30
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=23.33 E-value=72 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCch
Q 027339 63 RMAVKKAVQCGNVEDAIEKVNDLNPE 88 (224)
Q Consensus 63 r~~I~~~I~~g~~~~Ai~~~~~~~~~ 88 (224)
-.+|+++|..|+..+|++.+-++-|-
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP~ 64 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPPI 64 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 57899999999999999999877764
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.96 E-value=2.3e+02 Score=20.85 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=8.2
Q ss_pred HHHcCCHHHHHHHHHh
Q 027339 69 AVQCGNVEDAIEKVND 84 (224)
Q Consensus 69 ~I~~g~~~~Ai~~~~~ 84 (224)
....|++++|++++++
T Consensus 115 ~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLE 130 (252)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3445555555555544
No 32
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=22.85 E-value=38 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCch
Q 027339 63 RMAVKKAVQCGNVEDAIEKVNDLNPE 88 (224)
Q Consensus 63 r~~I~~~I~~g~~~~Ai~~~~~~~~~ 88 (224)
-.+|++++..|+..+|++.+-++-|-
T Consensus 40 ~~qvr~lL~~g~~~~ALk~aL~~pP~ 65 (152)
T 3dwl_G 40 IPQARSAIQTGNALQGLKTLLSYVPY 65 (152)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 37899999999999999999887654
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=22.67 E-value=2.1e+02 Score=20.33 Aligned_cols=98 Identities=14% Similarity=0.034 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhCHH-HHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHc-CCHHHHHHHHHhcCchhhhccccchhch
Q 027339 23 EDMNKLVMNFLVTEGYV-DAAEKFRMESGTEPDIDLATITDRMAVKKAVQC-GNVEDAIEKVNDLNPEILDTNPQLFFHL 100 (224)
Q Consensus 23 ~~l~~lI~~yL~~~Gy~-~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~-g~~~~Ai~~~~~~~~~l~~~~~~l~F~L 100 (224)
......++..+...|-. ++...|.+-..+.+. +.... .....-.... |+++.|+..+++.-. ....+. ...+
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~--~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~ 115 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEIN--NNYGWFLCGRLNRPAESMAYFDKALA--DPTYPT-PYIA 115 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH--HHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSC-HHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHH--HHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcc-hHHH
Confidence 33334444444455544 444444444433332 22222 2233345667 888888877765332 001111 1112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhcC
Q 027339 101 QQQRLIELIRNGKVEEALEFAQEELA 126 (224)
Q Consensus 101 ~~q~fiEli~~~~~~~Al~~~r~~l~ 126 (224)
+...-.-+...|+..+|+.+.++-+.
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222223456777777777776443
No 34
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.82 E-value=1.9e+02 Score=19.03 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhchHHH
Q 027339 24 DMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQ 103 (224)
Q Consensus 24 ~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~L~~q 103 (224)
.+..+...|+...-|.++...|.+-..+.+............-.-....|+++.|+.++.+.. +.++.- ...+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~-~~~~~~ 104 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI----EKDGGD-VKALYR 104 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHTSCC-HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH----hhCccC-HHHHHH
Confidence 344444444444455666667776666655321111112223334678899999999987532 111111 111222
Q ss_pred HHHHHHhcCChHHHHHHHHHhcC
Q 027339 104 RLIELIRNGKVEEALEFAQEELA 126 (224)
Q Consensus 104 ~fiEli~~~~~~~Al~~~r~~l~ 126 (224)
.-.-+...|+..+|+.+.++-+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 22224456889999998887653
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=20.82 E-value=2.2e+02 Score=19.86 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHhcCChHHHHHHHHHhc
Q 027339 108 LIRNGKVEEALEFAQEEL 125 (224)
Q Consensus 108 li~~~~~~~Al~~~r~~l 125 (224)
+...|+.++|+++.++-+
T Consensus 117 ~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCchhHHHHHHHHH
Confidence 344566666666666543
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.68 E-value=71 Score=18.38 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=11.7
Q ss_pred HcCCHHHHHHHHHhc
Q 027339 71 QCGNVEDAIEKVNDL 85 (224)
Q Consensus 71 ~~g~~~~Ai~~~~~~ 85 (224)
..||++.|++|+-.|
T Consensus 32 ~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 32 NTSTMEQATEYLLTH 46 (47)
T ss_dssp HSCSHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHcC
Confidence 457999999998654
No 37
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.57 E-value=2e+02 Score=25.66 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=64.4
Q ss_pred cCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhcccc-
Q 027339 17 DVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQ- 95 (224)
Q Consensus 17 ~~~~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~- 95 (224)
.+.++.+.+.--|.+-| .-.+.|..++...|++...+. -..+.-+++..|++.+|-..+-..-..+++....
T Consensus 326 ~v~v~e~~ivpyi~~~l---~n~~lA~~lA~R~~LpGAd~L----~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti 398 (494)
T 1bpo_A 326 SVCVEEENIIPYITNVL---QNPDLALRMAVRNNLAGAEEL----FARKFNALFAQGNYSEAAKVAANAPKGILRTPDTI 398 (494)
T ss_dssp EEEECTTTHHHHHHHTT---CCHHHHHHHHHHTTCSSCHHH----HHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHH
T ss_pred EEEEccccchhhhhhcc---CCHHHHHHHHHhcCCccHHHH----HHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHH
Confidence 34555555555444444 556799999999999875443 3556889999999999988876543334332100
Q ss_pred -----c-----hhchHHHHHHHHHhcC--ChHHHHHHHHHhcC
Q 027339 96 -----L-----FFHLQQQRLIELIRNG--KVEEALEFAQEELA 126 (224)
Q Consensus 96 -----l-----~F~L~~q~fiEli~~~--~~~~Al~~~r~~l~ 126 (224)
+ .-.-..|.|--++..| +..+.++.+|--+.
T Consensus 399 ~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r~vL~ 441 (494)
T 1bpo_A 399 RRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQ 441 (494)
T ss_dssp HHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHHhHHHHh
Confidence 0 0112445565566666 35778888886553
No 38
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=20.35 E-value=68 Score=28.37 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcC
Q 027339 61 TDRMAVKKAVQCGNVEDAIEKVNDLN 86 (224)
Q Consensus 61 ~~r~~I~~~I~~g~~~~Ai~~~~~~~ 86 (224)
...+.|-.+|+.|++++|++||.+..
T Consensus 179 ~l~~~i~~liR~G~~~eA~~lc~~~g 204 (460)
T 3iko_C 179 IFFKYIYELILAGAIDEALEEAKLSD 204 (460)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 45678889999999999999998753
No 39
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.19 E-value=1.1e+02 Score=20.32 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=17.3
Q ss_pred HHHHHHH-Hc--CCHHHHHHHHHhcCch
Q 027339 64 MAVKKAV-QC--GNVEDAIEKVNDLNPE 88 (224)
Q Consensus 64 ~~I~~~I-~~--g~~~~Ai~~~~~~~~~ 88 (224)
.+.++++ .. ++++.|++|+-.|...
T Consensus 44 ~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 44 LHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4455554 33 5899999999887653
Done!