Query 027341
Match_columns 224
No_of_seqs 257 out of 1764
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.7 4.4E-18 9.5E-23 151.3 3.0 216 3-219 9-270 (344)
2 KOG0317 Predicted E3 ubiquitin 99.4 2.1E-13 4.6E-18 117.1 3.2 48 123-170 237-284 (293)
3 PHA02929 N1R/p28-like protein; 99.3 1E-12 2.2E-17 111.9 3.4 56 123-178 172-235 (238)
4 PF13639 zf-RING_2: Ring finge 99.3 1E-12 2.2E-17 83.5 0.6 41 126-166 1-44 (44)
5 PLN03208 E3 ubiquitin-protein 99.3 3.1E-12 6.7E-17 105.1 3.3 53 119-171 12-80 (193)
6 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.4E-12 5.2E-17 84.0 1.8 48 125-172 2-50 (50)
7 PHA02926 zinc finger-like prot 99.2 1E-11 2.2E-16 103.4 3.1 56 123-178 168-238 (242)
8 KOG0823 Predicted E3 ubiquitin 99.2 9.5E-12 2.1E-16 104.1 2.2 52 123-174 45-99 (230)
9 PF15227 zf-C3HC4_4: zinc fing 99.1 2.6E-11 5.7E-16 76.4 2.3 38 128-165 1-42 (42)
10 COG5243 HRD1 HRD ubiquitin lig 99.1 1.5E-10 3.3E-15 102.6 7.5 53 123-175 285-350 (491)
11 PF13923 zf-C3HC4_2: Zinc fing 99.1 3E-11 6.5E-16 74.8 1.8 38 128-165 1-39 (39)
12 PF12678 zf-rbx1: RING-H2 zinc 99.1 6.4E-11 1.4E-15 83.4 2.3 42 125-166 19-73 (73)
13 smart00504 Ubox Modified RING 99.0 4.2E-10 9.2E-15 76.3 3.3 45 126-170 2-46 (63)
14 KOG0320 Predicted E3 ubiquitin 99.0 2.2E-10 4.8E-15 92.3 2.2 48 123-170 129-178 (187)
15 TIGR00599 rad18 DNA repair pro 99.0 2.8E-10 6E-15 103.4 2.8 51 121-171 22-72 (397)
16 KOG4628 Predicted E3 ubiquitin 98.9 7.5E-10 1.6E-14 98.6 3.9 46 126-171 230-279 (348)
17 cd00162 RING RING-finger (Real 98.9 8.6E-10 1.9E-14 68.8 2.5 43 127-169 1-45 (45)
18 PF00097 zf-C3HC4: Zinc finger 98.9 7E-10 1.5E-14 69.1 2.0 38 128-165 1-41 (41)
19 KOG0287 Postreplication repair 98.9 7.9E-10 1.7E-14 97.0 2.1 83 124-212 22-104 (442)
20 COG5432 RAD18 RING-finger-cont 98.8 1.3E-09 2.8E-14 94.0 1.8 48 125-172 25-72 (391)
21 COG5540 RING-finger-containing 98.8 1.7E-09 3.6E-14 93.7 2.3 46 125-170 323-372 (374)
22 smart00184 RING Ring finger. E 98.8 4.5E-09 9.8E-14 63.3 2.5 38 128-165 1-39 (39)
23 PF12861 zf-Apc11: Anaphase-pr 98.8 5.1E-09 1.1E-13 75.2 2.8 48 123-170 19-82 (85)
24 PF14634 zf-RING_5: zinc-RING 98.8 5.2E-09 1.1E-13 66.4 2.5 41 127-167 1-44 (44)
25 COG5574 PEX10 RING-finger-cont 98.7 5.5E-09 1.2E-13 89.1 2.5 48 123-170 213-262 (271)
26 KOG2164 Predicted E3 ubiquitin 98.7 6.8E-09 1.5E-13 95.6 2.7 46 125-170 186-236 (513)
27 KOG4172 Predicted E3 ubiquitin 98.6 6.4E-09 1.4E-13 68.0 0.5 50 124-173 6-57 (62)
28 KOG0802 E3 ubiquitin ligase [P 98.6 2E-08 4.3E-13 95.5 2.2 46 124-169 290-340 (543)
29 PF04564 U-box: U-box domain; 98.5 3.3E-08 7.1E-13 69.5 2.0 47 124-170 3-50 (73)
30 PF13445 zf-RING_UBOX: RING-ty 98.5 2.8E-08 6.2E-13 62.7 1.0 30 128-158 1-34 (43)
31 KOG4265 Predicted E3 ubiquitin 98.3 2.1E-07 4.5E-12 82.6 2.4 49 123-171 288-337 (349)
32 KOG2177 Predicted E3 ubiquitin 98.3 1.7E-07 3.7E-12 80.0 1.7 45 123-167 11-55 (386)
33 TIGR00570 cdk7 CDK-activating 98.3 6.8E-07 1.5E-11 78.7 4.3 47 125-171 3-55 (309)
34 KOG1002 Nucleotide excision re 98.3 2.8E-07 6.1E-12 85.3 1.8 101 56-170 481-586 (791)
35 PF14835 zf-RING_6: zf-RING of 98.2 2E-07 4.3E-12 63.3 -0.1 45 124-170 6-51 (65)
36 COG5194 APC11 Component of SCF 98.2 5.3E-07 1.2E-11 63.5 1.9 46 126-171 21-82 (88)
37 KOG0828 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 81.9 1.9 49 122-170 568-634 (636)
38 KOG1734 Predicted RING-contain 98.2 2.5E-06 5.5E-11 73.2 4.9 48 123-170 222-281 (328)
39 KOG1785 Tyrosine kinase negati 98.1 1.1E-06 2.4E-11 78.9 1.6 48 125-172 369-418 (563)
40 KOG4159 Predicted E3 ubiquitin 98.1 2E-06 4.4E-11 78.5 2.5 50 122-171 81-130 (398)
41 KOG0978 E3 ubiquitin ligase in 98.0 1.4E-06 3E-11 83.9 1.1 45 126-170 644-689 (698)
42 KOG0824 Predicted E3 ubiquitin 98.0 3.3E-06 7.3E-11 73.4 2.1 47 124-170 6-53 (324)
43 KOG1493 Anaphase-promoting com 97.9 2.3E-06 5E-11 59.8 0.3 46 125-170 20-81 (84)
44 COG5219 Uncharacterized conser 97.9 4.8E-06 1E-10 81.7 1.9 51 121-171 1465-1524(1525)
45 KOG2930 SCF ubiquitin ligase, 97.9 2.9E-06 6.3E-11 62.7 -0.1 46 125-170 46-108 (114)
46 KOG2879 Predicted E3 ubiquitin 97.8 8.3E-05 1.8E-09 64.1 8.0 54 117-170 231-287 (298)
47 KOG4692 Predicted E3 ubiquitin 97.8 2.7E-05 5.9E-10 69.2 5.0 51 123-173 420-470 (489)
48 PF11793 FANCL_C: FANCL C-term 97.8 4.6E-06 1E-10 58.2 -0.6 46 125-170 2-66 (70)
49 KOG0311 Predicted E3 ubiquitin 97.7 6.1E-06 1.3E-10 73.2 -0.9 47 124-170 42-90 (381)
50 COG5152 Uncharacterized conser 97.7 1.5E-05 3.2E-10 65.7 1.1 44 126-169 197-240 (259)
51 KOG0297 TNF receptor-associate 97.6 2.3E-05 5.1E-10 71.8 2.2 49 122-170 18-67 (391)
52 smart00744 RINGv The RING-vari 97.6 4E-05 8.7E-10 49.7 1.9 40 127-166 1-49 (49)
53 KOG0804 Cytoplasmic Zn-finger 97.6 2.8E-05 6.1E-10 71.0 1.5 47 122-170 172-222 (493)
54 KOG4275 Predicted E3 ubiquitin 97.5 1.8E-05 3.9E-10 68.7 -0.6 44 125-172 300-344 (350)
55 KOG1813 Predicted E3 ubiquitin 97.4 6.2E-05 1.3E-09 65.5 1.3 46 126-171 242-287 (313)
56 KOG2660 Locus-specific chromos 97.3 4.9E-05 1.1E-09 67.0 -0.2 48 124-171 14-62 (331)
57 KOG0825 PHD Zn-finger protein 97.3 5E-05 1.1E-09 73.5 -0.5 54 126-179 124-180 (1134)
58 PHA03096 p28-like protein; Pro 97.3 8.6E-05 1.9E-09 65.2 0.9 56 126-181 179-258 (284)
59 KOG1001 Helicase-like transcri 97.2 0.00035 7.6E-09 68.1 4.0 45 126-171 455-501 (674)
60 PF11789 zf-Nse: Zinc-finger o 97.1 0.00023 5E-09 47.6 1.3 41 124-164 10-53 (57)
61 KOG0827 Predicted E3 ubiquitin 97.0 0.00032 6.9E-09 63.2 2.2 41 126-166 5-52 (465)
62 KOG1645 RING-finger-containing 97.0 0.00028 6.1E-09 63.9 1.7 45 125-169 4-55 (463)
63 KOG1571 Predicted E3 ubiquitin 96.8 0.00087 1.9E-08 59.9 2.8 47 124-173 304-350 (355)
64 PF14447 Prok-RING_4: Prokaryo 96.7 0.001 2.2E-08 43.9 1.9 46 124-171 6-51 (55)
65 KOG4739 Uncharacterized protei 96.6 0.0008 1.7E-08 57.2 1.4 46 127-174 5-52 (233)
66 COG5236 Uncharacterized conser 96.6 0.0014 3E-08 58.5 2.7 52 121-172 57-110 (493)
67 PF10367 Vps39_2: Vacuolar sor 96.6 0.0033 7.1E-08 46.5 4.3 35 119-153 72-108 (109)
68 KOG4185 Predicted E3 ubiquitin 95.9 0.0052 1.1E-07 54.0 2.6 44 126-169 4-54 (296)
69 KOG2114 Vacuolar assembly/sort 95.8 0.0082 1.8E-07 59.0 3.5 66 102-170 813-883 (933)
70 KOG1428 Inhibitor of type V ad 95.7 0.0053 1.1E-07 63.4 1.7 67 124-199 3485-3564(3738)
71 KOG1941 Acetylcholine receptor 95.5 0.0029 6.3E-08 57.3 -0.5 48 123-170 363-416 (518)
72 KOG3002 Zn finger protein [Gen 95.5 0.0069 1.5E-07 53.6 1.7 43 124-170 47-91 (299)
73 PF14570 zf-RING_4: RING/Ubox 95.5 0.013 2.8E-07 37.7 2.5 42 128-169 1-47 (48)
74 KOG1814 Predicted E3 ubiquitin 95.5 0.0043 9.2E-08 56.5 0.2 45 124-168 183-238 (445)
75 PF04641 Rtf2: Rtf2 RING-finge 95.3 0.019 4.1E-07 49.8 3.7 47 123-170 111-161 (260)
76 PF07800 DUF1644: Protein of u 95.2 0.014 2.9E-07 46.8 2.4 33 125-157 2-47 (162)
77 KOG4445 Uncharacterized conser 95.0 0.0087 1.9E-07 52.5 0.9 47 124-170 114-186 (368)
78 COG5222 Uncharacterized conser 95.0 0.012 2.6E-07 51.7 1.6 42 126-167 275-318 (427)
79 KOG2932 E3 ubiquitin ligase in 94.8 0.011 2.3E-07 52.2 0.9 47 125-173 90-137 (389)
80 KOG3268 Predicted E3 ubiquitin 94.8 0.019 4.2E-07 46.8 2.2 49 126-174 166-232 (234)
81 KOG3039 Uncharacterized conser 94.5 0.027 5.9E-07 48.2 2.5 47 124-170 220-270 (303)
82 KOG4367 Predicted Zn-finger pr 94.5 0.019 4.2E-07 52.8 1.6 36 123-158 2-37 (699)
83 PHA02825 LAP/PHD finger-like p 94.4 0.055 1.2E-06 43.4 3.8 47 123-170 6-59 (162)
84 KOG0826 Predicted E3 ubiquitin 94.0 0.029 6.4E-07 49.8 1.7 46 124-169 299-345 (357)
85 KOG3800 Predicted E3 ubiquitin 94.0 0.04 8.6E-07 48.2 2.5 44 127-170 2-51 (300)
86 PHA02862 5L protein; Provision 93.9 0.052 1.1E-06 42.9 2.9 44 126-170 3-53 (156)
87 KOG1952 Transcription factor N 93.7 0.032 7E-07 55.0 1.6 52 123-174 189-251 (950)
88 PF05290 Baculo_IE-1: Baculovi 93.6 0.05 1.1E-06 42.3 2.2 48 124-171 79-133 (140)
89 KOG1100 Predicted E3 ubiquitin 93.5 0.027 5.9E-07 47.3 0.7 39 128-170 161-200 (207)
90 PF10272 Tmpp129: Putative tra 93.5 0.079 1.7E-06 48.0 3.7 28 143-170 311-351 (358)
91 KOG3970 Predicted E3 ubiquitin 92.8 0.076 1.7E-06 45.0 2.3 47 124-170 49-105 (299)
92 KOG2034 Vacuolar sorting prote 92.7 0.15 3.2E-06 50.8 4.6 35 122-156 814-850 (911)
93 KOG0298 DEAD box-containing he 92.4 0.027 5.8E-07 57.8 -1.0 45 124-168 1152-1197(1394)
94 PF08746 zf-RING-like: RING-li 92.3 0.12 2.6E-06 32.4 2.2 38 128-165 1-43 (43)
95 COG5175 MOT2 Transcriptional r 91.9 0.11 2.3E-06 46.6 2.3 46 125-170 14-64 (480)
96 PF05883 Baculo_RING: Baculovi 91.5 0.059 1.3E-06 42.1 0.2 34 125-158 26-68 (134)
97 PF03854 zf-P11: P-11 zinc fin 90.7 0.12 2.5E-06 33.2 0.9 41 128-170 5-46 (50)
98 KOG1940 Zn-finger protein [Gen 90.0 0.19 4.1E-06 44.0 2.0 43 125-167 158-204 (276)
99 KOG2817 Predicted E3 ubiquitin 89.0 0.28 6.1E-06 44.7 2.3 43 125-167 334-382 (394)
100 PF12906 RINGv: RING-variant d 88.9 0.2 4.4E-06 31.9 1.0 38 128-165 1-47 (47)
101 KOG3053 Uncharacterized conser 87.8 0.29 6.4E-06 42.2 1.6 57 123-179 18-91 (293)
102 KOG4362 Transcriptional regula 87.5 0.13 2.9E-06 50.0 -0.7 46 125-170 21-69 (684)
103 KOG0309 Conserved WD40 repeat- 84.7 0.53 1.2E-05 46.4 1.8 27 138-164 1043-1069(1081)
104 KOG3899 Uncharacterized conser 84.7 0.44 9.4E-06 42.0 1.1 28 143-170 325-365 (381)
105 COG5183 SSM4 Protein involved 84.6 0.87 1.9E-05 45.3 3.2 49 123-171 10-67 (1175)
106 PF14569 zf-UDP: Zinc-binding 84.3 1.3 2.7E-05 31.4 3.0 50 125-174 9-66 (80)
107 KOG0825 PHD Zn-finger protein 83.8 0.51 1.1E-05 46.7 1.2 45 126-170 97-154 (1134)
108 KOG1815 Predicted E3 ubiquitin 82.5 0.8 1.7E-05 42.7 2.0 35 124-158 69-104 (444)
109 KOG1812 Predicted E3 ubiquitin 82.3 0.79 1.7E-05 42.1 1.8 34 124-157 145-182 (384)
110 KOG3039 Uncharacterized conser 82.0 1.4 3E-05 38.0 3.0 33 125-157 43-75 (303)
111 COG5220 TFB3 Cdk activating ki 81.2 0.51 1.1E-05 40.5 0.2 46 125-170 10-64 (314)
112 PLN02638 cellulose synthase A 79.2 2.1 4.6E-05 44.0 3.7 57 124-181 16-80 (1079)
113 KOG3161 Predicted E3 ubiquitin 78.8 0.75 1.6E-05 44.6 0.4 36 126-163 12-51 (861)
114 KOG1812 Predicted E3 ubiquitin 76.9 0.98 2.1E-05 41.5 0.6 40 125-165 306-351 (384)
115 KOG3842 Adaptor protein Pellin 76.5 2.3 5E-05 37.9 2.8 47 124-170 340-414 (429)
116 KOG0827 Predicted E3 ubiquitin 76.2 0.26 5.6E-06 44.9 -3.2 46 125-170 196-245 (465)
117 KOG3799 Rab3 effector RIM1 and 74.7 1.7 3.8E-05 34.0 1.4 64 120-183 60-131 (169)
118 PLN02189 cellulose synthase 74.0 2.8 6E-05 43.0 3.0 56 125-181 34-97 (1040)
119 PLN02400 cellulose synthase 71.1 3.2 6.9E-05 42.8 2.7 56 125-181 36-99 (1085)
120 PLN02436 cellulose synthase A 70.6 3.7 8E-05 42.3 3.0 56 125-181 36-99 (1094)
121 PLN02915 cellulose synthase A 69.5 4.1 8.9E-05 41.9 3.0 58 124-182 14-79 (1044)
122 KOG2113 Predicted RNA binding 69.1 3.6 7.8E-05 36.7 2.2 45 124-170 342-387 (394)
123 PF04216 FdhE: Protein involve 68.6 0.76 1.7E-05 40.4 -2.1 44 124-167 171-219 (290)
124 KOG4718 Non-SMC (structural ma 68.2 2.7 5.8E-05 35.4 1.2 45 125-169 181-226 (235)
125 PF02891 zf-MIZ: MIZ/SP-RING z 67.9 3.5 7.7E-05 26.5 1.5 42 126-168 3-50 (50)
126 KOG3113 Uncharacterized conser 66.2 4 8.7E-05 35.3 1.9 56 125-185 111-170 (293)
127 KOG0269 WD40 repeat-containing 65.9 4.6 0.0001 40.0 2.5 42 126-167 780-825 (839)
128 PF04710 Pellino: Pellino; In 65.2 2.1 4.5E-05 39.3 0.0 46 125-170 328-401 (416)
129 KOG2068 MOT2 transcription fac 65.0 5.7 0.00012 35.6 2.7 46 126-171 250-299 (327)
130 PRK03564 formate dehydrogenase 64.7 2.2 4.8E-05 38.1 0.1 44 124-167 186-234 (309)
131 TIGR01562 FdhE formate dehydro 64.4 2.2 4.8E-05 38.0 0.0 44 125-168 184-233 (305)
132 PF06844 DUF1244: Protein of u 63.5 3.8 8.2E-05 28.1 1.0 12 146-157 11-22 (68)
133 COG5109 Uncharacterized conser 63.3 3.9 8.6E-05 36.5 1.4 42 125-166 336-383 (396)
134 PLN02195 cellulose synthase A 61.1 8.2 0.00018 39.5 3.3 46 125-170 6-59 (977)
135 KOG3579 Predicted E3 ubiquitin 57.9 4.4 9.5E-05 35.7 0.7 34 125-158 268-305 (352)
136 TIGR00622 ssl1 transcription f 57.9 10 0.00022 28.8 2.6 41 126-166 56-110 (112)
137 PF07975 C1_4: TFIIH C1-like d 57.5 7.4 0.00016 25.3 1.6 28 139-166 23-50 (51)
138 KOG0824 Predicted E3 ubiquitin 56.1 4.5 9.8E-05 35.8 0.5 50 124-173 104-154 (324)
139 smart00647 IBR In Between Ring 54.6 3.2 7E-05 27.2 -0.5 19 139-157 42-60 (64)
140 KOG0802 E3 ubiquitin ligase [P 53.7 6.6 0.00014 37.7 1.3 44 124-171 478-521 (543)
141 KOG2066 Vacuolar assembly/sort 52.0 9.8 0.00021 37.9 2.1 42 123-165 782-830 (846)
142 PF02318 FYVE_2: FYVE-type zin 51.2 17 0.00037 27.5 2.9 45 124-169 53-104 (118)
143 KOG1609 Protein involved in mR 50.7 10 0.00022 33.0 1.9 47 125-171 78-135 (323)
144 KOG2231 Predicted E3 ubiquitin 50.2 14 0.0003 36.4 2.8 44 127-170 2-52 (669)
145 KOG0801 Predicted E3 ubiquitin 48.5 6.2 0.00013 32.0 0.1 26 124-149 176-204 (205)
146 PF04710 Pellino: Pellino; In 48.4 5.9 0.00013 36.4 0.0 29 139-170 305-339 (416)
147 PRK04023 DNA polymerase II lar 48.3 12 0.00026 38.4 2.1 45 124-170 625-674 (1121)
148 PF13240 zinc_ribbon_2: zinc-r 48.3 3.7 8.1E-05 22.1 -0.8 14 154-167 8-21 (23)
149 PF07191 zinc-ribbons_6: zinc- 48.2 1.9 4.1E-05 30.0 -2.5 43 126-173 2-44 (70)
150 KOG1829 Uncharacterized conser 48.1 7.3 0.00016 37.7 0.6 26 139-167 533-558 (580)
151 PF09723 Zn-ribbon_8: Zinc rib 48.0 5.3 0.00011 24.6 -0.3 31 141-172 9-40 (42)
152 PF13901 DUF4206: Domain of un 47.2 13 0.00028 31.0 1.9 39 124-167 151-197 (202)
153 PF01363 FYVE: FYVE zinc finge 46.2 7 0.00015 26.3 0.1 32 124-155 8-43 (69)
154 PF10497 zf-4CXXC_R1: Zinc-fin 45.0 17 0.00038 27.1 2.1 24 144-167 37-69 (105)
155 PF10146 zf-C4H2: Zinc finger- 44.3 18 0.00038 31.0 2.3 28 147-174 196-223 (230)
156 KOG4185 Predicted E3 ubiquitin 44.0 3.8 8.3E-05 35.8 -1.9 43 126-168 208-265 (296)
157 PF04423 Rad50_zn_hook: Rad50 43.3 9.4 0.0002 24.7 0.4 11 160-170 21-31 (54)
158 smart00132 LIM Zinc-binding do 42.9 13 0.00029 21.2 1.0 34 128-169 2-37 (39)
159 cd00065 FYVE FYVE domain; Zinc 42.3 19 0.00041 23.1 1.7 31 126-156 3-37 (57)
160 KOG4451 Uncharacterized conser 42.0 18 0.0004 30.9 2.0 27 147-173 251-277 (286)
161 smart00064 FYVE Protein presen 41.7 22 0.00048 23.7 2.1 32 125-156 10-45 (68)
162 PF05605 zf-Di19: Drought indu 41.4 15 0.00032 23.7 1.1 36 125-167 2-39 (54)
163 PF06937 EURL: EURL protein; 41.0 27 0.00058 30.6 2.9 39 126-164 31-75 (285)
164 COG2835 Uncharacterized conser 39.0 6.8 0.00015 26.3 -0.8 15 161-175 10-24 (60)
165 PF14446 Prok-RING_1: Prokaryo 37.6 28 0.0006 22.9 1.9 30 125-154 5-38 (54)
166 PF10571 UPF0547: Uncharacteri 37.3 8.5 0.00019 21.3 -0.5 7 128-134 3-9 (26)
167 COG3492 Uncharacterized protei 36.2 16 0.00034 26.8 0.6 12 146-157 42-53 (104)
168 PF11023 DUF2614: Protein of u 34.6 13 0.00029 28.1 0.1 24 142-171 74-97 (114)
169 PF06906 DUF1272: Protein of u 34.5 31 0.00067 22.9 1.8 42 127-170 7-52 (57)
170 KOG1356 Putative transcription 34.5 12 0.00026 37.6 -0.3 43 125-167 229-279 (889)
171 PF10083 DUF2321: Uncharacteri 33.5 19 0.00042 28.9 0.8 25 144-171 27-51 (158)
172 KOG1814 Predicted E3 ubiquitin 33.0 46 0.001 30.9 3.2 34 123-156 366-405 (445)
173 KOG2807 RNA polymerase II tran 32.3 30 0.00064 31.2 1.8 41 126-166 331-374 (378)
174 COG4647 AcxC Acetone carboxyla 31.0 21 0.00046 27.8 0.6 22 129-150 61-82 (165)
175 PF01485 IBR: IBR domain; Int 30.3 6.5 0.00014 25.6 -2.1 19 139-157 42-60 (64)
176 PF07227 DUF1423: Protein of u 29.0 29 0.00062 32.5 1.2 11 142-152 151-161 (446)
177 smart00290 ZnF_UBP Ubiquitin C 28.7 32 0.0007 21.4 1.1 23 128-150 2-24 (50)
178 PRK14714 DNA polymerase II lar 26.5 30 0.00065 36.6 1.0 46 125-170 667-720 (1337)
179 KOG1815 Predicted E3 ubiquitin 26.4 24 0.00052 32.9 0.3 35 137-171 178-238 (444)
180 COG3813 Uncharacterized protei 26.3 43 0.00093 23.5 1.4 25 144-170 28-52 (84)
181 KOG2113 Predicted RNA binding 25.1 20 0.00043 32.2 -0.5 47 124-170 135-183 (394)
182 PRK11595 DNA utilization prote 24.9 59 0.0013 27.3 2.4 38 127-169 7-44 (227)
183 COG4306 Uncharacterized protei 22.7 40 0.00087 26.2 0.8 22 146-170 29-50 (160)
184 KOG0956 PHD finger protein AF1 22.6 63 0.0014 32.2 2.2 30 139-168 42-71 (900)
185 KOG2789 Putative Zn-finger pro 22.4 48 0.001 30.7 1.4 50 124-173 73-148 (482)
186 PRK07276 DNA polymerase III su 21.9 78 0.0017 27.9 2.6 51 162-218 60-110 (290)
187 COG3058 FdhE Uncharacterized p 21.2 95 0.0021 27.5 2.9 88 123-214 183-277 (308)
188 TIGR02652 conserved hypothetic 21.2 44 0.00095 26.5 0.8 25 158-182 8-32 (163)
189 PF09654 DUF2396: Protein of u 21.1 44 0.00096 26.4 0.8 24 159-182 6-29 (161)
190 PF00412 LIM: LIM domain; Int 20.7 28 0.0006 22.1 -0.4 35 128-170 1-37 (58)
191 PF14311 DUF4379: Domain of un 20.7 60 0.0013 20.8 1.3 23 142-165 33-55 (55)
192 PTZ00303 phosphatidylinositol 20.5 65 0.0014 32.7 1.9 31 126-156 461-500 (1374)
193 KOG2041 WD40 repeat protein [G 20.5 1.1E+02 0.0024 30.8 3.5 27 140-170 1159-1185(1189)
194 PF05502 Dynactin_p62: Dynacti 20.2 45 0.00097 31.7 0.8 11 126-136 27-37 (483)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.4e-18 Score=151.28 Aligned_cols=216 Identities=28% Similarity=0.376 Sum_probs=157.1
Q ss_pred ccccCCCCCCCCceeeeeeccCch-hHHHHHHHhhhhhhhhccccceeEEEEEEE-ecCccccchhhh--HhhHHHHHHh
Q 027341 3 FRASDFPREYDGACLQMRMSYSPA-AHLFLFLVQWTDCHLAGALGLLRILIYKVY-VDGTTTMSTHER--KASIREFYAI 78 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~qm~l~~~~~-a~~~l~l~~w~~~~l~~~lgl~~il~y~v~-~dg~~~~s~~~r--~~si~~fy~~ 78 (224)
|++..+|+++.+..-+||++++.. .++..+++.|++...+. .|..+.+++..+ .++...++...+ ..+++.++++
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~s~~~ 87 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAS-TGLSQSLIWANAVADASATMSVSSRPVLTAIRASSSI 87 (344)
T ss_pred hhhhhcccccccccceeeeeccCchhhccccccccccccccc-cccchhhcccchhhccccccchhcccchhhhhhhhcc
Confidence 677889999999999999999988 88999999999988776 777888888887 778888877766 6788899888
Q ss_pred HhhH---------HHHHhhccCChHHH----------HHHHHHHHHHhhhchh--------hhhhcCccccCCCccceec
Q 027341 79 IYPS---------LLQLQRGVTDTEDK----------KQKAVYMERYRRRDDE--------EQRQYTDADIEREEECGIC 131 (224)
Q Consensus 79 i~ps---------l~qL~~~~~~~~~~----------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~C~IC 131 (224)
.+++ +.+.+.+....... .+...+...++..... ............+.+|+||
T Consensus 88 ~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s~~k~CGIC 167 (344)
T KOG1039|consen 88 SEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKSSEKECGIC 167 (344)
T ss_pred ccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCccccccceeh
Confidence 8777 22222222211111 0111111222221111 1111222233457899999
Q ss_pred cccCcCc--------cccCCCCcccHhhHHHHh--cc-----CCCCcccccccccccCCCcccccCCcccccccccchHH
Q 027341 132 METNSKI--------VLPNCNHAMCLKCYREWR--IR-----SQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTREN 196 (224)
Q Consensus 132 ~~~~~~~--------~~~~C~H~Fc~~Ci~~w~--~~-----~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~ 196 (224)
++...+. ++++|.|.||..||+.|. .+ +++||.||.+...+.+...|+.+...+..++++...+.
T Consensus 168 me~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~li~e~~~~~ 247 (344)
T KOG1039|consen 168 METINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKLIEEYEAEM 247 (344)
T ss_pred hhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecccccccHHHHHHHh
Confidence 9976654 458999999999999999 44 47999999999999999999999998877777777777
Q ss_pred HHHHHHHHhhCCCCCCCcccccc
Q 027341 197 LRRLFLYIDKLPLIIPDNLFDPY 219 (224)
Q Consensus 197 ~~~l~~~i~~lp~~~~~~~~~~~ 219 (224)
-.+...|++..+...|..-...|
T Consensus 248 s~~~c~yf~~~~g~cPf~s~~~y 270 (344)
T KOG1039|consen 248 SAKDCKYFSQGLGSCPFGSKCFY 270 (344)
T ss_pred hccchhhhcCCCCCCCCCCcccc
Confidence 77788999999999997555544
No 2
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.1e-13 Score=117.06 Aligned_cols=48 Identities=31% Similarity=0.912 Sum_probs=44.8
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+....|.+|++...+|..+||||.||+.||..|......||+||..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 455789999999999999999999999999999999999999999886
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.31 E-value=1e-12 Score=111.87 Aligned_cols=56 Identities=34% Similarity=0.921 Sum_probs=47.5
Q ss_pred CCCccceeccccCcC--------ccccCCCCcccHhhHHHHhccCCCCcccccccccccCCCcc
Q 027341 123 EREEECGICMETNSK--------IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLW 178 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~--------~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~ 178 (224)
..+.+|+||++.+.+ +++++|+|.||..||.+|+..+.+||+||.++..+.+...|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 346799999997654 36778999999999999999999999999999887766554
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.26 E-value=1e-12 Score=83.53 Aligned_cols=41 Identities=44% Similarity=1.028 Sum_probs=35.2
Q ss_pred ccceeccccCc---CccccCCCCcccHhhHHHHhccCCCCcccc
Q 027341 126 EECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCR 166 (224)
Q Consensus 126 ~~C~IC~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR 166 (224)
++|+||++.+. ..+.++|||.||.+||.+|+.++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999774 467788999999999999999999999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.25 E-value=3.1e-12 Score=105.11 Aligned_cols=53 Identities=25% Similarity=0.756 Sum_probs=45.0
Q ss_pred ccccCCCccceeccccCcCccccCCCCcccHhhHHHHhcc----------------CCCCccccccccc
Q 027341 119 DADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----------------SQSCPFCRDSLKR 171 (224)
Q Consensus 119 ~~~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----------------~~~CP~CR~~l~~ 171 (224)
..+..++.+|+||++...+++.++|||.||+.||.+|+.. ...||.||.+++.
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3344567899999999999999999999999999999742 2589999999873
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.24 E-value=2.4e-12 Score=84.00 Aligned_cols=48 Identities=38% Similarity=0.917 Sum_probs=42.4
Q ss_pred CccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
+..|.||++...+.+..||||. ||..|+.+|......||+||++++.|
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4679999999999999999999 99999999999999999999998753
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=99.18 E-value=1e-11 Score=103.37 Aligned_cols=56 Identities=32% Similarity=0.901 Sum_probs=45.6
Q ss_pred CCCccceeccccCc---------CccccCCCCcccHhhHHHHhccC------CCCcccccccccccCCCcc
Q 027341 123 EREEECGICMETNS---------KIVLPNCNHAMCLKCYREWRIRS------QSCPFCRDSLKRVNSGDLW 178 (224)
Q Consensus 123 ~~~~~C~IC~~~~~---------~~~~~~C~H~Fc~~Ci~~w~~~~------~~CP~CR~~l~~~~~~~~~ 178 (224)
+.+.+|+||+|... .+++.+|+|.||..||..|.... .+||+||..+..+.+...+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 45689999998642 25788999999999999999642 4699999999988876554
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9.5e-12 Score=104.10 Aligned_cols=52 Identities=25% Similarity=0.691 Sum_probs=45.5
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhcc---CCCCcccccccccccC
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLKRVNS 174 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~---~~~CP~CR~~l~~~~~ 174 (224)
...++|.||++...+|+++.|||.||+.||-+|++. ++.||+|+..++....
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 456899999999999999999999999999999964 4789999998874443
No 9
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.13 E-value=2.6e-11 Score=76.35 Aligned_cols=38 Identities=32% Similarity=0.768 Sum_probs=30.2
Q ss_pred ceeccccCcCccccCCCCcccHhhHHHHhccC----CCCccc
Q 027341 128 CGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFC 165 (224)
Q Consensus 128 C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CP~C 165 (224)
|+||++.+.+|+.++|||.||..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999988653 369987
No 10
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-10 Score=102.56 Aligned_cols=53 Identities=30% Similarity=0.715 Sum_probs=44.3
Q ss_pred CCCccceecccc-Cc------------CccccCCCCcccHhhHHHHhccCCCCcccccccccccCC
Q 027341 123 EREEECGICMET-NS------------KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSG 175 (224)
Q Consensus 123 ~~~~~C~IC~~~-~~------------~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~~ 175 (224)
.++..|.||++. +. .|..+||||.+|.+|++.|++++++||+||.++-...+.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~ 350 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSS 350 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccCC
Confidence 466789999987 32 258889999999999999999999999999997654444
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.10 E-value=3e-11 Score=74.79 Aligned_cols=38 Identities=29% Similarity=0.937 Sum_probs=33.9
Q ss_pred ceeccccCcCc-cccCCCCcccHhhHHHHhccCCCCccc
Q 027341 128 CGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFC 165 (224)
Q Consensus 128 C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~~~~~~CP~C 165 (224)
|+||++...++ +.++|||.||..|+.+|++.+.+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999998 689999999999999999888999988
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.06 E-value=6.4e-11 Score=83.45 Aligned_cols=42 Identities=33% Similarity=0.966 Sum_probs=34.8
Q ss_pred CccceeccccCcC-------------ccccCCCCcccHhhHHHHhccCCCCcccc
Q 027341 125 EEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIRSQSCPFCR 166 (224)
Q Consensus 125 ~~~C~IC~~~~~~-------------~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR 166 (224)
+..|+||++.+.+ .+..+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3459999998732 25568999999999999999999999998
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.97 E-value=4.2e-10 Score=76.32 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=42.2
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+||.+.+.+|+.++|||.||..||.+|+..+..||.|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999999999999999999999999988889999998875
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.2e-10 Score=92.34 Aligned_cols=48 Identities=29% Similarity=0.779 Sum_probs=42.0
Q ss_pred CCCccceeccccCcC--ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+....|+|||+.+.+ ++-++|||.||..||..-+.....||.||+.|+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 344789999998876 466899999999999999999999999998775
No 15
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=2.8e-10 Score=103.44 Aligned_cols=51 Identities=27% Similarity=0.673 Sum_probs=45.9
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
..+....|+||.+.+..++.++|||.||..||..|+.....||.||.++..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345678999999999999999999999999999999888899999998763
No 16
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.5e-10 Score=98.57 Aligned_cols=46 Identities=26% Similarity=0.871 Sum_probs=39.7
Q ss_pred ccceeccccCcC---ccccCCCCcccHhhHHHHhccC-CCCccccccccc
Q 027341 126 EECGICMETNSK---IVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLKR 171 (224)
Q Consensus 126 ~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~l~~ 171 (224)
..|+||+|.+.+ .+.+||+|.||..||++|+.+. ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 489999998886 3678999999999999999776 569999997753
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=8.6e-10 Score=68.80 Aligned_cols=43 Identities=37% Similarity=0.991 Sum_probs=36.0
Q ss_pred cceeccccCcCcc-ccCCCCcccHhhHHHHhcc-CCCCccccccc
Q 027341 127 ECGICMETNSKIV-LPNCNHAMCLKCYREWRIR-SQSCPFCRDSL 169 (224)
Q Consensus 127 ~C~IC~~~~~~~~-~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l 169 (224)
+|+||++.+.+++ .++|||.||..|+..|... +..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999885554 4559999999999999987 78899998753
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.89 E-value=7e-10 Score=69.08 Aligned_cols=38 Identities=42% Similarity=1.057 Sum_probs=34.9
Q ss_pred ceeccccCcCcc-ccCCCCcccHhhHHHHhc--cCCCCccc
Q 027341 128 CGICMETNSKIV-LPNCNHAMCLKCYREWRI--RSQSCPFC 165 (224)
Q Consensus 128 C~IC~~~~~~~~-~~~C~H~Fc~~Ci~~w~~--~~~~CP~C 165 (224)
|+||++.+.++. .++|||.||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999988 899999999999999997 56789987
No 19
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.87 E-value=7.9e-10 Score=97.04 Aligned_cols=83 Identities=23% Similarity=0.471 Sum_probs=58.8
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccccccCCCcccccCCcccccccccchHHHHHHHHH
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLY 203 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 203 (224)
.-..|.||.+.|..|+++||+|.||..||+.++..+..||.|+.+++.-. +.-+...++++..-+. -...|+.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~---Lr~n~il~Eiv~S~~~---~R~~Ll~f 95 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD---LRNNRILDEIVKSLNF---ARNHLLQF 95 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhh---hhhhhHHHHHHHHHHH---HHHHHHHH
Confidence 34689999999999999999999999999999999999999999887322 2223333343333332 22346666
Q ss_pred HhhCCCCCC
Q 027341 204 IDKLPLIIP 212 (224)
Q Consensus 204 i~~lp~~~~ 212 (224)
+.--|.-.|
T Consensus 96 l~~~~~p~P 104 (442)
T KOG0287|consen 96 LLESPAPSP 104 (442)
T ss_pred HhcCCCCCc
Confidence 554444444
No 20
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.82 E-value=1.3e-09 Score=93.98 Aligned_cols=48 Identities=27% Similarity=0.512 Sum_probs=44.5
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
-..|-||-+.+..+..++|||.||..||+.++..+.-||+||.+....
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 468999999999999999999999999999999999999999987643
No 21
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.7e-09 Score=93.74 Aligned_cols=46 Identities=33% Similarity=0.849 Sum_probs=40.3
Q ss_pred CccceeccccCcC---ccccCCCCcccHhhHHHHhc-cCCCCcccccccc
Q 027341 125 EEECGICMETNSK---IVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~ 170 (224)
..+|+|||+.+.+ .+.+||.|.||..|+.+|+. .+..||.||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4789999998875 47789999999999999996 6889999998773
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.77 E-value=4.5e-09 Score=63.26 Aligned_cols=38 Identities=37% Similarity=1.038 Sum_probs=34.6
Q ss_pred ceeccccCcCccccCCCCcccHhhHHHHhc-cCCCCccc
Q 027341 128 CGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFC 165 (224)
Q Consensus 128 C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~C 165 (224)
|+||++....++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988899999999999999999997 56789987
No 23
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.75 E-value=5.1e-09 Score=75.18 Aligned_cols=48 Identities=29% Similarity=0.808 Sum_probs=38.7
Q ss_pred CCCccceeccccCcC-------------ccccCCCCcccHhhHHHHhcc---CCCCcccccccc
Q 027341 123 EREEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~-------------~~~~~C~H~Fc~~Ci~~w~~~---~~~CP~CR~~l~ 170 (224)
..++.|+||...+.. .+.-.|+|.||..||.+|+.. +..||+||+++.
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 457789999876652 244579999999999999975 478999999875
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.75 E-value=5.2e-09 Score=66.41 Aligned_cols=41 Identities=39% Similarity=0.981 Sum_probs=35.7
Q ss_pred cceeccccCc---CccccCCCCcccHhhHHHHhccCCCCccccc
Q 027341 127 ECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 167 (224)
Q Consensus 127 ~C~IC~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 167 (224)
.|+||++.+. .+.+++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999872 4788999999999999999877789999984
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.5e-09 Score=89.07 Aligned_cols=48 Identities=27% Similarity=0.742 Sum_probs=42.6
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHH-HhccCCC-Ccccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYRE-WRIRSQS-CPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~-w~~~~~~-CP~CR~~l~ 170 (224)
+.+..|.||++....+..++|||.||..||.. |-.++.. ||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 45789999999999999999999999999988 9876655 999998764
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.8e-09 Score=95.57 Aligned_cols=46 Identities=37% Similarity=0.819 Sum_probs=41.2
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhccC-----CCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-----QSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-----~~CP~CR~~l~ 170 (224)
+..|+||++....++.+.|||.||..||..++..+ ..||+||..|.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 67899999999999999999999999998876543 68999999887
No 27
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.4e-09 Score=67.99 Aligned_cols=50 Identities=36% Similarity=0.744 Sum_probs=42.8
Q ss_pred CCccceeccccCcCccccCCCCc-ccHhhHHH-HhccCCCCccccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHA-MCLKCYRE-WRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~-w~~~~~~CP~CR~~l~~~~ 173 (224)
.+.+|.||+|...+.++..|||. +|..|-.+ |...+..||+||++++.+.
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVI 57 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence 44789999999999999999998 99999865 5557889999999997554
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2e-08 Score=95.51 Aligned_cols=46 Identities=37% Similarity=0.744 Sum_probs=41.7
Q ss_pred CCccceeccccCcC-----ccccCCCCcccHhhHHHHhccCCCCccccccc
Q 027341 124 REEECGICMETNSK-----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~-----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l 169 (224)
.+..|.||.|.... +..++|+|.||..|+..|+++.++||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 46789999998877 78889999999999999999999999999843
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.55 E-value=3.3e-08 Score=69.52 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=39.3
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
+++.|+|+.+.+.+|+.+++||.|++.||..|+.. ..+||+|+.++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 45789999999999999999999999999999988 899999998886
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.52 E-value=2.8e-08 Score=62.74 Aligned_cols=30 Identities=30% Similarity=0.753 Sum_probs=20.9
Q ss_pred ceeccccCcC----ccccCCCCcccHhhHHHHhcc
Q 027341 128 CGICMETNSK----IVLPNCNHAMCLKCYREWRIR 158 (224)
Q Consensus 128 C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~ 158 (224)
|+||.+ +.+ |+.++|||.||.+|+.++..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 666 888899999999999999874
No 31
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.1e-07 Score=82.61 Aligned_cols=49 Identities=31% Similarity=0.859 Sum_probs=44.6
Q ss_pred CCCccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCccccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
+...+|.||+....+.+++||.|. .|..|.+....+.+.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 446899999999999999999998 9999999988888999999999874
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.7e-07 Score=79.97 Aligned_cols=45 Identities=36% Similarity=0.734 Sum_probs=40.5
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 167 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 167 (224)
+++..|+||++.+.+++.++|||.||..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 466899999999999999999999999999988776678999994
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=6.8e-07 Score=78.69 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=35.3
Q ss_pred Cccceecccc--CcCc---cccCCCCcccHhhHHHH-hccCCCCccccccccc
Q 027341 125 EEECGICMET--NSKI---VLPNCNHAMCLKCYREW-RIRSQSCPFCRDSLKR 171 (224)
Q Consensus 125 ~~~C~IC~~~--~~~~---~~~~C~H~Fc~~Ci~~w-~~~~~~CP~CR~~l~~ 171 (224)
+..|++|... .+.- ...+|||.||.+|+... ......||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 3579999984 2221 22279999999999984 4556789999998874
No 34
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.28 E-value=2.8e-07 Score=85.27 Aligned_cols=101 Identities=20% Similarity=0.468 Sum_probs=74.2
Q ss_pred EecCccccchhhhHhhHHHHHHhHhhHHHHHhhccCChHHHHHHHHHHHHHhhhchhhhhhcCccccCCCccceeccccC
Q 027341 56 YVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETN 135 (224)
Q Consensus 56 ~~dg~~~~s~~~r~~si~~fy~~i~psl~qL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~ 135 (224)
|.|++.++..+....++...|+.||.-|.++.+......--... +. .....+...+.+|.+|.+.-
T Consensus 481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S--------~~------~n~~~enk~~~~C~lc~d~a 546 (791)
T KOG1002|consen 481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYS--------AN------ANLPDENKGEVECGLCHDPA 546 (791)
T ss_pred HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeeh--------hh------cCCCccccCceeecccCChh
Confidence 67778888888888899999999999988887544332211111 00 01111223567899999999
Q ss_pred cCccccCCCCcccHhhHHHHhcc-----CCCCcccccccc
Q 027341 136 SKIVLPNCNHAMCLKCYREWRIR-----SQSCPFCRDSLK 170 (224)
Q Consensus 136 ~~~~~~~C~H~Fc~~Ci~~w~~~-----~~~CP~CR~~l~ 170 (224)
.+.+...|.|.||..|+.++... +.+||.|-..++
T Consensus 547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 99999999999999999888743 479999998776
No 35
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.24 E-value=2e-07 Score=63.30 Aligned_cols=45 Identities=29% Similarity=0.701 Sum_probs=25.1
Q ss_pred CCccceeccccCcCcc-ccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIV-LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~-~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+...|++|.+.+.+|+ +..|.|.||..||.+-+. ..||+|+.|-.
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 3468999999999996 579999999999987554 45999988764
No 36
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.23 E-value=5.3e-07 Score=63.52 Aligned_cols=46 Identities=28% Similarity=0.583 Sum_probs=36.9
Q ss_pred ccceeccccCcC----------------ccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 126 EECGICMETNSK----------------IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 126 ~~C~IC~~~~~~----------------~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
+.|+||...+.+ .+.--|.|.||..||.+|+.....||++|+++..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 578888765442 1334599999999999999999999999998753
No 37
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.4e-07 Score=81.90 Aligned_cols=49 Identities=31% Similarity=0.751 Sum_probs=39.6
Q ss_pred cCCCccceeccccCc-----------------CccccCCCCcccHhhHHHHhc-cCCCCcccccccc
Q 027341 122 IEREEECGICMETNS-----------------KIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~-----------------~~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~ 170 (224)
.++...|+|||.... .-..+||.|.||..|+.+|+. .+-.||.||+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 346688999997544 125679999999999999998 4559999999874
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.5e-06 Score=73.16 Aligned_cols=48 Identities=25% Similarity=0.725 Sum_probs=38.3
Q ss_pred CCCccceeccccCc----------CccccCCCCcccHhhHHHHh--ccCCCCcccccccc
Q 027341 123 EREEECGICMETNS----------KIVLPNCNHAMCLKCYREWR--IRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~----------~~~~~~C~H~Fc~~Ci~~w~--~~~~~CP~CR~~l~ 170 (224)
.++..|+||-..+. +...+.|+|.||..||+.|. .+.++||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 35678999975433 34677899999999999997 56799999998763
No 39
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.10 E-value=1.1e-06 Score=78.94 Aligned_cols=48 Identities=35% Similarity=0.924 Sum_probs=42.3
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhcc--CCCCcccccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLKRV 172 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~l~~~ 172 (224)
-..|.||-|...+...-||||..|..|+..|... .++||+||..|+..
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 3579999999999989999999999999999843 68999999998743
No 40
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2e-06 Score=78.46 Aligned_cols=50 Identities=34% Similarity=0.759 Sum_probs=45.7
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
...+++|.||+..+.+++.+||||.||..||.+-+.....||.||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 35779999999999999999999999999999988888999999998864
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.4e-06 Score=83.86 Aligned_cols=45 Identities=24% Similarity=0.732 Sum_probs=40.7
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHh-ccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~-~~~~~CP~CR~~l~ 170 (224)
..|+.|-....+.+.+.|||.||..|+.+-. .+...||.|..+|.
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 5799999999999999999999999998766 46789999999886
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.3e-06 Score=73.44 Aligned_cols=47 Identities=28% Similarity=0.627 Sum_probs=40.5
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
...+|+||+....-|+.++|+|.||.-||..-... ..+|++||.+|.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 34689999999999999999999999999775544 456999999986
No 43
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.3e-06 Score=59.82 Aligned_cols=46 Identities=33% Similarity=0.796 Sum_probs=35.6
Q ss_pred CccceeccccCcC-------------ccccCCCCcccHhhHHHHhcc---CCCCcccccccc
Q 027341 125 EEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~-------------~~~~~C~H~Fc~~Ci~~w~~~---~~~CP~CR~~l~ 170 (224)
++.|+||.-.|.. .+.--|.|.||..||.+|+.. +..||+||+.++
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3489999866552 144469999999999999964 468999999875
No 44
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.89 E-value=4.8e-06 Score=81.66 Aligned_cols=51 Identities=24% Similarity=0.673 Sum_probs=40.8
Q ss_pred ccCCCccceeccccCc-------CccccCCCCcccHhhHHHHhcc--CCCCccccccccc
Q 027341 121 DIEREEECGICMETNS-------KIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLKR 171 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~-------~~~~~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~l~~ 171 (224)
..+.-.+|+||+.... ...+..|.|-||..|+-+|... +++||+||..++.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3456689999997533 3567779999999999999965 5899999988763
No 45
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=2.9e-06 Score=62.68 Aligned_cols=46 Identities=24% Similarity=0.626 Sum_probs=35.8
Q ss_pred CccceeccccCcC-----------------ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNSK-----------------IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~-----------------~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.+.|+||..-+.+ .+--.|.|.||..||.+|++..+.||+|.++..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 4679999743321 233469999999999999999999999987653
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.3e-05 Score=64.11 Aligned_cols=54 Identities=24% Similarity=0.664 Sum_probs=42.6
Q ss_pred cCccccCCCccceeccccCcCcccc-CCCCcccHhhHHHHhc--cCCCCcccccccc
Q 027341 117 YTDADIEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRI--RSQSCPFCRDSLK 170 (224)
Q Consensus 117 ~~~~~~~~~~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~--~~~~CP~CR~~l~ 170 (224)
.+....+.+.+|++|-+....|... +|||.||+.||..-.. -+.+||.|-.+..
T Consensus 231 ~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 231 FSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4444556789999999998888555 5999999999977554 3579999987665
No 47
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=2.7e-05 Score=69.23 Aligned_cols=51 Identities=24% Similarity=0.643 Sum_probs=45.8
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
.++..|+||+......+..||+|.-|+.||.+.+-+.+.|-+|+..+..++
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 466889999999999999999999999999999999999999998876433
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.75 E-value=4.6e-06 Score=58.16 Aligned_cols=46 Identities=37% Similarity=0.954 Sum_probs=23.4
Q ss_pred CccceeccccCc-C-----ccc--cCCCCcccHhhHHHHhcc---C--------CCCcccccccc
Q 027341 125 EEECGICMETNS-K-----IVL--PNCNHAMCLKCYREWRIR---S--------QSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~-~-----~~~--~~C~H~Fc~~Ci~~w~~~---~--------~~CP~CR~~l~ 170 (224)
+.+|+||++... . .+. ..|++.||..|+.+|+.. + ..||.|+.+|+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998644 2 233 379999999999999853 1 26999999886
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=6.1e-06 Score=73.22 Aligned_cols=47 Identities=28% Similarity=0.636 Sum_probs=38.7
Q ss_pred CCccceeccccCcCc-cccCCCCcccHhhHHHHh-ccCCCCcccccccc
Q 027341 124 REEECGICMETNSKI-VLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~-~~~~~CP~CR~~l~ 170 (224)
.+..|+||++.+... ....|+|.||..||..-+ ...+.||.||+.+-
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 457899999988874 556799999999997665 45789999998764
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.67 E-value=1.5e-05 Score=65.69 Aligned_cols=44 Identities=25% Similarity=0.623 Sum_probs=40.1
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 169 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l 169 (224)
+.|.||.+.+..|+.+.|||.||..|...-.+....|-+|-+..
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 68999999999999999999999999988778889999997654
No 51
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.65 E-value=2.3e-05 Score=71.77 Aligned_cols=49 Identities=33% Similarity=0.717 Sum_probs=44.3
Q ss_pred cCCCccceeccccCcCcccc-CCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 122 IEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...+..|++|+....+++.+ .|||.||..|+..|...+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 35668899999999999984 99999999999999999999999998775
No 52
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.57 E-value=4e-05 Score=49.70 Aligned_cols=40 Identities=20% Similarity=0.741 Sum_probs=31.3
Q ss_pred cceeccc--cCcCccccCCC-----CcccHhhHHHHhcc--CCCCcccc
Q 027341 127 ECGICME--TNSKIVLPNCN-----HAMCLKCYREWRIR--SQSCPFCR 166 (224)
Q Consensus 127 ~C~IC~~--~~~~~~~~~C~-----H~Fc~~Ci~~w~~~--~~~CP~CR 166 (224)
.|.||++ ...++...||. |.+|..|+.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 33446677885 88999999999954 45899994
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.56 E-value=2.8e-05 Score=70.97 Aligned_cols=47 Identities=30% Similarity=0.726 Sum_probs=37.0
Q ss_pred cCCCccceeccccCcC----ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 122 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..+-..|+||+|.... .+.+.|.|.||..|+..|.. .+||+||...+
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 3455789999996554 25568999999999999975 58999997554
No 54
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=1.8e-05 Score=68.71 Aligned_cols=44 Identities=36% Similarity=0.912 Sum_probs=37.8
Q ss_pred CccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
...|+|||+...+.+.++|||. -|.+|-.+. +.||+||+.+.++
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHH
Confidence 5789999999999999999997 799997543 4899999987654
No 55
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=6.2e-05 Score=65.51 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=42.1
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
+.|-||...+..++.+.|+|.||..|...-++....|++|.+....
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccccccc
Confidence 5699999999999999999999999998888888999999887753
No 56
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.31 E-value=4.9e-05 Score=67.03 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=42.0
Q ss_pred CCccceeccccCcCc-cccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 124 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
.-..|.+|-..+.++ ..+.|-|.||.+||.+++..+..||.|...+..
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 457899999999987 456899999999999999999999999987764
No 57
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.29 E-value=5e-05 Score=73.46 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=41.6
Q ss_pred ccceeccccCcC---ccccCCCCcccHhhHHHHhccCCCCcccccccccccCCCccc
Q 027341 126 EECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWV 179 (224)
Q Consensus 126 ~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~ 179 (224)
..|++|+..+.+ ....+|+|.||..|+..|....++||+||..+..+.+.+...
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~~ 180 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLESTG 180 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeecccc
Confidence 457777654443 244579999999999999999999999999998777655433
No 58
>PHA03096 p28-like protein; Provisional
Probab=97.27 E-value=8.6e-05 Score=65.15 Aligned_cols=56 Identities=20% Similarity=0.432 Sum_probs=39.8
Q ss_pred ccceeccccCc--------CccccCCCCcccHhhHHHHhccC---C---CCcccccccccc----------cCCCccccc
Q 027341 126 EECGICMETNS--------KIVLPNCNHAMCLKCYREWRIRS---Q---SCPFCRDSLKRV----------NSGDLWVYM 181 (224)
Q Consensus 126 ~~C~IC~~~~~--------~~~~~~C~H~Fc~~Ci~~w~~~~---~---~CP~CR~~l~~~----------~~~~~~~~~ 181 (224)
..|+||++... .+.+..|.|.||..|+..|...+ . .||.|+..+..+ .|...|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~ 258 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDD 258 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHHhhcchhhhccCCchhhhcC
Confidence 67999998544 25778999999999999998542 3 455555545444 666666654
No 59
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.17 E-value=0.00035 Score=68.09 Aligned_cols=45 Identities=31% Similarity=0.865 Sum_probs=38.3
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccC--CCCccccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLKR 171 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~l~~ 171 (224)
..|.+|++ ...++.++|+|.||..|+..-+..+ ..||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 7778889999999999998877543 469999987763
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.09 E-value=0.00023 Score=47.60 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=29.1
Q ss_pred CCccceeccccCcCccc-cCCCCcccHhhHHHHhcc--CCCCcc
Q 027341 124 REEECGICMETNSKIVL-PNCNHAMCLKCYREWRIR--SQSCPF 164 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~-~~C~H~Fc~~Ci~~w~~~--~~~CP~ 164 (224)
....|+|....+.+|+. ..|||.|....|..|+.+ ...||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45789999999999976 589999999999999943 568998
No 61
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00032 Score=63.21 Aligned_cols=41 Identities=29% Similarity=0.844 Sum_probs=31.2
Q ss_pred ccceeccccCcC----ccccCCCCcccHhhHHHHhcc--C-CCCcccc
Q 027341 126 EECGICMETNSK----IVLPNCNHAMCLKCYREWRIR--S-QSCPFCR 166 (224)
Q Consensus 126 ~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~--~-~~CP~CR 166 (224)
-.|.||.+.+.. ...-.|||.||..|+..|... + ..||.||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 479999654442 122249999999999999976 3 4899999
No 62
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00028 Score=63.91 Aligned_cols=45 Identities=27% Similarity=0.772 Sum_probs=36.6
Q ss_pred CccceeccccCcC-----ccccCCCCcccHhhHHHHhcc--CCCCccccccc
Q 027341 125 EEECGICMETNSK-----IVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSL 169 (224)
Q Consensus 125 ~~~C~IC~~~~~~-----~~~~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~l 169 (224)
...|+||++.... .+.+.|||.|..+||++|+.+ ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 3689999997653 477789999999999999964 36899998654
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00087 Score=59.92 Aligned_cols=47 Identities=26% Similarity=0.706 Sum_probs=35.8
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
....|.||.+...+.+..||||.=| |..-. +...+||+||..+..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~~~ 350 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRLVR 350 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHHHHH
Confidence 4468999999999999999999855 65432 23345999999887543
No 64
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.70 E-value=0.001 Score=43.89 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=37.7
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
....|-.|...-...+.++|||..|..|..-+ +-+.||+|-.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 34578889888888899999999999997654 34689999998863
No 65
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.0008 Score=57.18 Aligned_cols=46 Identities=26% Similarity=0.786 Sum_probs=32.7
Q ss_pred cceeccccCc--CccccCCCCcccHhhHHHHhccCCCCcccccccccccC
Q 027341 127 ECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 174 (224)
Q Consensus 127 ~C~IC~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~ 174 (224)
.|..|..... .-.++.|+|+||..|...-. ...||+|++++..+.-
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQL 52 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeeec
Confidence 4777765433 23778999999999975422 2389999999875543
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.61 E-value=0.0014 Score=58.48 Aligned_cols=52 Identities=25% Similarity=0.591 Sum_probs=42.9
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHH--hccCCCCcccccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREW--RIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w--~~~~~~CP~CR~~l~~~ 172 (224)
..+++..|-||.+...-...+||+|..|.-|..+. +...+.||+||.....|
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 34566789999999998889999999999998654 46789999999876543
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.59 E-value=0.0033 Score=46.51 Aligned_cols=35 Identities=20% Similarity=0.564 Sum_probs=27.2
Q ss_pred ccccCCCccceeccccCcC--ccccCCCCcccHhhHH
Q 027341 119 DADIEREEECGICMETNSK--IVLPNCNHAMCLKCYR 153 (224)
Q Consensus 119 ~~~~~~~~~C~IC~~~~~~--~~~~~C~H~Fc~~Ci~ 153 (224)
....+.+..|++|-..+.. -+..||||.||..|+.
T Consensus 72 ~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 72 SVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred eEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3445667889999987665 3567999999999974
No 68
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0052 Score=53.96 Aligned_cols=44 Identities=34% Similarity=0.782 Sum_probs=36.6
Q ss_pred ccceeccccCcC------ccccCCCCcccHhhHHHHhcc-CCCCccccccc
Q 027341 126 EECGICMETNSK------IVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSL 169 (224)
Q Consensus 126 ~~C~IC~~~~~~------~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l 169 (224)
.+|.||-++++. |..+.|||.+|..|+.+.+.. ...||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999887663 677789999999999988865 46899999875
No 69
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.0082 Score=59.04 Aligned_cols=66 Identities=23% Similarity=0.467 Sum_probs=43.8
Q ss_pred HHHHHhhhchhhhhhcCccc----cCCCccceeccccCcCc-cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 102 YMERYRRRDDEEQRQYTDAD----IEREEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~----~~~~~~C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..+.+++..++.+.+..... .-....|..|-....-| |...|||.||..|.. .....||.|+....
T Consensus 813 ~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 813 AIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 44555555544444332222 12336899998877655 567899999999998 56689999987544
No 70
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.65 E-value=0.0053 Score=63.38 Aligned_cols=67 Identities=25% Similarity=0.631 Sum_probs=45.1
Q ss_pred CCccceeccccCc---CccccCCCCcccHhhHHHHhccC----------CCCcccccccccccCCCcccccCCccccccc
Q 027341 124 REEECGICMETNS---KIVLPNCNHAMCLKCYREWRIRS----------QSCPFCRDSLKRVNSGDLWVYMDSRDIIDSA 190 (224)
Q Consensus 124 ~~~~C~IC~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~~----------~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~~ 190 (224)
.++.|-||+..-- ..+.+.|+|.||..|.+..+++. -+||+|..++..+.- .|..|..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L---------kDLldPi 3555 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL---------KDLLDPI 3555 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH---------HHHHHHH
Confidence 3467888886422 35788999999999997766543 489999988874332 2334555
Q ss_pred ccchHHHHH
Q 027341 191 TVTRENLRR 199 (224)
Q Consensus 191 ~~~~~~~~~ 199 (224)
+.-.++++|
T Consensus 3556 Kel~edV~~ 3564 (3738)
T KOG1428|consen 3556 KELYEDVRR 3564 (3738)
T ss_pred HHHHHHHHH
Confidence 555555554
No 71
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.53 E-value=0.0029 Score=57.28 Aligned_cols=48 Identities=33% Similarity=0.699 Sum_probs=36.5
Q ss_pred CCCccceeccccCc----CccccCCCCcccHhhHHHHhccC--CCCcccccccc
Q 027341 123 EREEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~----~~~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~l~ 170 (224)
+-+..|..|-+..- .---+||.|+||..|+..++.++ .+||.||+-..
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 44577999987533 23456899999999999998654 79999995443
No 72
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.50 E-value=0.0069 Score=53.64 Aligned_cols=43 Identities=28% Similarity=0.722 Sum_probs=36.3
Q ss_pred CCccceeccccCcCccccCC--CCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNC--NHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C--~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+-.+|+||.+....|+.. | ||.-|.+|-.+ ..+.||.||.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccccee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 457899999999998775 7 89999999764 4578999999886
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.50 E-value=0.013 Score=37.73 Aligned_cols=42 Identities=26% Similarity=0.685 Sum_probs=20.9
Q ss_pred ceeccccCc--Ccccc--CCCCcccHhhHHHHhc-cCCCCccccccc
Q 027341 128 CGICMETNS--KIVLP--NCNHAMCLKCYREWRI-RSQSCPFCRDSL 169 (224)
Q Consensus 128 C~IC~~~~~--~~~~~--~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l 169 (224)
|++|.+... +.... +||+..|..|....+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 677877653 22222 5899999999999886 478999999864
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.0043 Score=56.51 Aligned_cols=45 Identities=22% Similarity=0.568 Sum_probs=34.3
Q ss_pred CCccceeccccCcC---ccccCCCCcccHhhHHHHhcc--------CCCCcccccc
Q 027341 124 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR--------SQSCPFCRDS 168 (224)
Q Consensus 124 ~~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~--------~~~CP~CR~~ 168 (224)
....|.||++.... .+.+||+|.||.+|...+... .-.||-+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 45789999997664 578899999999999887642 1367776543
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.27 E-value=0.019 Score=49.80 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=39.0
Q ss_pred CCCccceeccccCcC----ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.....|+|....+.. ..+-+|||.|+..++.... .+..||+|-.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 456789999988764 4666999999999999874 4678999999997
No 76
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.24 E-value=0.014 Score=46.80 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=24.1
Q ss_pred CccceeccccCcCccccC------------CCCc-ccHhhHHHHhc
Q 027341 125 EEECGICMETNSKIVLPN------------CNHA-MCLKCYREWRI 157 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~------------C~H~-Fc~~Ci~~w~~ 157 (224)
+..|+||||..-+.|++- |+.. -|..|+++..+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 467999999988877764 4444 36789988753
No 77
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.04 E-value=0.0087 Score=52.51 Aligned_cols=47 Identities=26% Similarity=0.726 Sum_probs=36.4
Q ss_pred CCccceeccccCcC---ccccCCCCcccHhhHHHHhcc-----------------------CCCCcccccccc
Q 027341 124 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR-----------------------SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~-----------------------~~~CP~CR~~l~ 170 (224)
....|.||+--|.+ -..++|-|-||..|+.+++.. ...||+||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 44679999876554 467899999999999887642 137999999886
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.00 E-value=0.012 Score=51.66 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=35.7
Q ss_pred ccceeccccCcCcccc-CCCCcccHhhHHHHh-ccCCCCccccc
Q 027341 126 EECGICMETNSKIVLP-NCNHAMCLKCYREWR-IRSQSCPFCRD 167 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~-~~~~~CP~CR~ 167 (224)
..|+.|......++.+ -|+|.||..||..-+ .....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6899999999988777 579999999997655 56789999975
No 79
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.011 Score=52.16 Aligned_cols=47 Identities=28% Similarity=0.663 Sum_probs=34.3
Q ss_pred CccceeccccCc-CccccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 125 EEECGICMETNS-KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 125 ~~~C~IC~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
...|.-|--.+. -....||.|.||.+|.+. ...+.||.|-..+.++.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRIE 137 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHHH
Confidence 356777754333 367889999999999754 34679999998877543
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.019 Score=46.85 Aligned_cols=49 Identities=27% Similarity=0.613 Sum_probs=35.2
Q ss_pred ccceeccccCcCc-------cccCCCCcccHhhHHHHhcc------C-----CCCcccccccccccC
Q 027341 126 EECGICMETNSKI-------VLPNCNHAMCLKCYREWRIR------S-----QSCPFCRDSLKRVNS 174 (224)
Q Consensus 126 ~~C~IC~~~~~~~-------~~~~C~H~Fc~~Ci~~w~~~------~-----~~CP~CR~~l~~~~~ 174 (224)
..|+||+..--++ -...||..||.-|+..|+.. + ..||.|..++.-.++
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS 232 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS 232 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence 4688887643322 23469999999999999853 1 489999998875443
No 81
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.027 Score=48.21 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=41.7
Q ss_pred CCccceeccccCcC----ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
....|++|.+...+ .++-+|||.+|..|.++.+.....||+|-.+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 45789999998776 477899999999999999999999999999886
No 82
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.45 E-value=0.019 Score=52.81 Aligned_cols=36 Identities=25% Similarity=0.654 Sum_probs=32.1
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhcc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR 158 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~ 158 (224)
|++..|+||...+.+|+.++|+|..|..|....+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 567889999999999999999999999999876644
No 83
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.36 E-value=0.055 Score=43.41 Aligned_cols=47 Identities=23% Similarity=0.596 Sum_probs=34.9
Q ss_pred CCCccceeccccCcCccccCCCC-----cccHhhHHHHhcc--CCCCcccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNH-----AMCLKCYREWRIR--SQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H-----~Fc~~Ci~~w~~~--~~~CP~CR~~l~ 170 (224)
..+..|-||.+..... ..||.- .-|.+|+.+|+.. ..+|+.|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3567899999875433 345543 3599999999964 478999998875
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.029 Score=49.79 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=37.0
Q ss_pred CCccceeccccCcCc-cccCCCCcccHhhHHHHhccCCCCccccccc
Q 027341 124 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l 169 (224)
....|++|+....++ ++.--|-.||+.|+..+..+.+.||+=..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 446899999876655 5555699999999999999999999865554
No 85
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.04 Score=48.19 Aligned_cols=44 Identities=23% Similarity=0.631 Sum_probs=32.6
Q ss_pred cceeccccCc-C----ccccCCCCcccHhhHHHHhc-cCCCCcccccccc
Q 027341 127 ECGICMETNS-K----IVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 170 (224)
Q Consensus 127 ~C~IC~~~~~-~----~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~ 170 (224)
.|++|..... . ...-+|+|..|.+|...... ....||-|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 4888876322 1 23338999999999998875 4678999988775
No 86
>PHA02862 5L protein; Provisional
Probab=93.94 E-value=0.052 Score=42.87 Aligned_cols=44 Identities=20% Similarity=0.595 Sum_probs=33.8
Q ss_pred ccceeccccCcCccccCCCC-----cccHhhHHHHhcc--CCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNH-----AMCLKCYREWRIR--SQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H-----~Fc~~Ci~~w~~~--~~~CP~CR~~l~ 170 (224)
..|-||.+...+.. .||.- .-|..|+.+|+.. ...||+|+.+..
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 57999998765543 45643 4799999999964 478999998765
No 87
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.71 E-value=0.032 Score=55.03 Aligned_cols=52 Identities=33% Similarity=0.699 Sum_probs=38.5
Q ss_pred CCCccceeccccCcC----ccccCCCCcccHhhHHHHhccC-------CCCcccccccccccC
Q 027341 123 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRS-------QSCPFCRDSLKRVNS 174 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~-------~~CP~CR~~l~~~~~ 174 (224)
.+..+|.||.+.+.. .....|-|+||..||..|-... -.||.|+.....+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~ 251 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPK 251 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCc
Confidence 355799999997664 2445699999999999997542 379999966554433
No 88
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.56 E-value=0.05 Score=42.34 Aligned_cols=48 Identities=31% Similarity=0.696 Sum_probs=36.9
Q ss_pred CCccceeccccCcCcccc----CCCCcccHhhHHHHhcc---CCCCccccccccc
Q 027341 124 REEECGICMETNSKIVLP----NCNHAMCLKCYREWRIR---SQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~----~C~H~Fc~~Ci~~w~~~---~~~CP~CR~~l~~ 171 (224)
.-.+|.||.|...+...+ -||-..|..|....++. ...||.|+.+++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 447899999987764333 28999999999764443 5799999998874
No 89
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.027 Score=47.34 Aligned_cols=39 Identities=31% Similarity=0.804 Sum_probs=32.8
Q ss_pred ceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccc
Q 027341 128 CGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 128 C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
|-.|.+......++||.|. +|..|-.. -..||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 9999998888999999997 99999643 356999998664
No 90
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.51 E-value=0.079 Score=48.04 Aligned_cols=28 Identities=32% Similarity=0.917 Sum_probs=22.2
Q ss_pred CCCcccHhhHHHHhccC-------------CCCcccccccc
Q 027341 143 CNHAMCLKCYREWRIRS-------------QSCPFCRDSLK 170 (224)
Q Consensus 143 C~H~Fc~~Ci~~w~~~~-------------~~CP~CR~~l~ 170 (224)
|.-+.|.+|+-+|.... ..||.||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 45567999999997432 48999999987
No 91
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.076 Score=44.96 Aligned_cols=47 Identities=21% Similarity=0.518 Sum_probs=36.7
Q ss_pred CCccceeccccCc--CccccCCCCcccHhhHHHHhcc--------CCCCcccccccc
Q 027341 124 REEECGICMETNS--KIVLPNCNHAMCLKCYREWRIR--------SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~--------~~~CP~CR~~l~ 170 (224)
....|..|-.... +.+.+.|-|.||+.|+.+|-.+ .-.||-|..+|-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4467888887655 4577789999999999999754 258999987764
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=0.15 Score=50.75 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=27.1
Q ss_pred cCCCccceeccccCc-C-ccccCCCCcccHhhHHHHh
Q 027341 122 IEREEECGICMETNS-K-IVLPNCNHAMCLKCYREWR 156 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~-~-~~~~~C~H~Fc~~Ci~~w~ 156 (224)
.+....|.+|...+- . -.+.||||.||+.|+.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 456788999987543 3 3667899999999997764
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.41 E-value=0.027 Score=57.82 Aligned_cols=45 Identities=27% Similarity=0.734 Sum_probs=39.3
Q ss_pred CCccceeccccCc-CccccCCCCcccHhhHHHHhccCCCCcccccc
Q 027341 124 REEECGICMETNS-KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDS 168 (224)
Q Consensus 124 ~~~~C~IC~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~ 168 (224)
.-..|.||.+... ......|||.+|..|...|+..+..||.|...
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 4468999999877 56677799999999999999999999999853
No 94
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.33 E-value=0.12 Score=32.38 Aligned_cols=38 Identities=24% Similarity=0.668 Sum_probs=21.7
Q ss_pred ceeccccCcCccc-c--CCCCcccHhhHHHHhccCC--CCccc
Q 027341 128 CGICMETNSKIVL-P--NCNHAMCLKCYREWRIRSQ--SCPFC 165 (224)
Q Consensus 128 C~IC~~~~~~~~~-~--~C~H~Fc~~Ci~~w~~~~~--~CP~C 165 (224)
|.+|.+....+.. . .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6678887666533 2 4888999999999886543 79987
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.94 E-value=0.11 Score=46.61 Aligned_cols=46 Identities=28% Similarity=0.709 Sum_probs=33.8
Q ss_pred CccceeccccCc--Cc--cccCCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 125 EEECGICMETNS--KI--VLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~--~~--~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
++-|+.|+|.+. +. .--+||-..|.-|+....+. +..||-||....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 345999999644 33 22368888999998776654 578999998765
No 96
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.48 E-value=0.059 Score=42.08 Aligned_cols=34 Identities=26% Similarity=0.652 Sum_probs=25.1
Q ss_pred CccceeccccCcC--c-cccCC------CCcccHhhHHHHhcc
Q 027341 125 EEECGICMETNSK--I-VLPNC------NHAMCLKCYREWRIR 158 (224)
Q Consensus 125 ~~~C~IC~~~~~~--~-~~~~C------~H~Fc~~Ci~~w~~~ 158 (224)
..+|.||++.+.+ + +-.+| .|.||..|+.+|...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 5789999987665 3 22344 488999999999543
No 97
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.69 E-value=0.12 Score=33.15 Aligned_cols=41 Identities=34% Similarity=0.780 Sum_probs=25.1
Q ss_pred ceeccccCcCccccCC-CCcccHhhHHHHhccCCCCcccccccc
Q 027341 128 CGICMETNSKIVLPNC-NHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 128 C~IC~~~~~~~~~~~C-~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
|.-|.-. +..+..| .|-.|..|+...+..+..||+|..++.
T Consensus 5 CKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 5 CKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred Chhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 4445432 3334457 577999999999999999999998874
No 98
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.03 E-value=0.19 Score=43.97 Aligned_cols=43 Identities=30% Similarity=0.660 Sum_probs=35.7
Q ss_pred CccceeccccCc----CccccCCCCcccHhhHHHHhccCCCCccccc
Q 027341 125 EEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 167 (224)
Q Consensus 125 ~~~C~IC~~~~~----~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 167 (224)
+..|+||.+... .+..++|||..|..|.......+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 355999998533 4677899999999999998876699999987
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=0.28 Score=44.72 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=34.3
Q ss_pred Cccceecccc---CcCccccCCCCcccHhhHHHHhccC---CCCccccc
Q 027341 125 EEECGICMET---NSKIVLPNCNHAMCLKCYREWRIRS---QSCPFCRD 167 (224)
Q Consensus 125 ~~~C~IC~~~---~~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CP~CR~ 167 (224)
.+.|||=.+. .+.|..+.|||..+..-+.+...+. ..||.|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4679988764 4458889999999999999987653 58999943
No 100
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=88.88 E-value=0.2 Score=31.90 Aligned_cols=38 Identities=24% Similarity=0.774 Sum_probs=23.5
Q ss_pred ceeccccCcC--ccccCCCC-----cccHhhHHHHhc--cCCCCccc
Q 027341 128 CGICMETNSK--IVLPNCNH-----AMCLKCYREWRI--RSQSCPFC 165 (224)
Q Consensus 128 C~IC~~~~~~--~~~~~C~H-----~Fc~~Ci~~w~~--~~~~CP~C 165 (224)
|-||++...+ +...||+= ..|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688875443 35566642 469999999996 45778887
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.82 E-value=0.29 Score=42.21 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=39.5
Q ss_pred CCCccceeccccCcCc----cccCC-----CCcccHhhHHHHhccC--------CCCcccccccccccCCCccc
Q 027341 123 EREEECGICMETNSKI----VLPNC-----NHAMCLKCYREWRIRS--------QSCPFCRDSLKRVNSGDLWV 179 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~----~~~~C-----~H~Fc~~Ci~~w~~~~--------~~CP~CR~~l~~~~~~~~~~ 179 (224)
+.+.-|-||+...++- -.-|| .|.-|.+|+..|.... .+||.|+....-+.+.-.|.
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~~ 91 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGPF 91 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccChH
Confidence 4556799999866652 22346 4678999999998542 47999998876555544433
No 102
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.51 E-value=0.13 Score=50.00 Aligned_cols=46 Identities=24% Similarity=0.592 Sum_probs=37.6
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhc---cCCCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CP~CR~~l~ 170 (224)
..+|+||.....+++.+.|.|.||..|+..-+. ....||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 468999999999999999999999999865432 2568999996554
No 103
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.69 E-value=0.53 Score=46.36 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=24.3
Q ss_pred ccccCCCCcccHhhHHHHhccCCCCcc
Q 027341 138 IVLPNCNHAMCLKCYREWRIRSQSCPF 164 (224)
Q Consensus 138 ~~~~~C~H~Fc~~Ci~~w~~~~~~CP~ 164 (224)
-+...|+|..|.+|..+|......||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 366789999999999999999999997
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.68 E-value=0.44 Score=41.97 Aligned_cols=28 Identities=32% Similarity=0.767 Sum_probs=22.5
Q ss_pred CCCcccHhhHHHHhcc-------------CCCCcccccccc
Q 027341 143 CNHAMCLKCYREWRIR-------------SQSCPFCRDSLK 170 (224)
Q Consensus 143 C~H~Fc~~Ci~~w~~~-------------~~~CP~CR~~l~ 170 (224)
|....|.+|+.+|... +.+||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5667899999998732 358999999886
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.60 E-value=0.87 Score=45.25 Aligned_cols=49 Identities=22% Similarity=0.608 Sum_probs=36.7
Q ss_pred CCCccceeccccC--cCccccCCCCc-----ccHhhHHHHhcc--CCCCccccccccc
Q 027341 123 EREEECGICMETN--SKIVLPNCNHA-----MCLKCYREWRIR--SQSCPFCRDSLKR 171 (224)
Q Consensus 123 ~~~~~C~IC~~~~--~~~~~~~C~H~-----Fc~~Ci~~w~~~--~~~CP~CR~~l~~ 171 (224)
+++..|-||...- .+|..-||... .|.+|+.+|+.. ...|-+|..+++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 3457899998643 34666677542 799999999975 4789999998764
No 106
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=84.33 E-value=1.3 Score=31.42 Aligned_cols=50 Identities=26% Similarity=0.671 Sum_probs=21.1
Q ss_pred CccceeccccCc-----C--ccccCCCCcccHhhHHH-HhccCCCCcccccccccccC
Q 027341 125 EEECGICMETNS-----K--IVLPNCNHAMCLKCYRE-WRIRSQSCPFCRDSLKRVNS 174 (224)
Q Consensus 125 ~~~C~IC~~~~~-----~--~~~~~C~H~Fc~~Ci~~-w~~~~~~CP~CR~~l~~~~~ 174 (224)
...|-||-+..- + .....|+--.|+.|++- ....++.||.|+.+.++...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccC
Confidence 457999987543 1 34457888899999964 44567999999988876443
No 107
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.79 E-value=0.51 Score=46.69 Aligned_cols=45 Identities=13% Similarity=0.392 Sum_probs=31.0
Q ss_pred ccceeccccCcC-------ccccCCCCcccHhhHHHHhcc------CCCCcccccccc
Q 027341 126 EECGICMETNSK-------IVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~-------~~~~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~l~ 170 (224)
..|.+|...+.. ..+-.|+|.||..||..|..+ ...|++|...|.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 445555544333 233359999999999999865 357899987654
No 108
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.54 E-value=0.8 Score=42.75 Aligned_cols=35 Identities=29% Similarity=0.769 Sum_probs=30.2
Q ss_pred CCccceeccccCcC-ccccCCCCcccHhhHHHHhcc
Q 027341 124 REEECGICMETNSK-IVLPNCNHAMCLKCYREWRIR 158 (224)
Q Consensus 124 ~~~~C~IC~~~~~~-~~~~~C~H~Fc~~Ci~~w~~~ 158 (224)
...+|.||.+.... ...+.|||.||..|+..++.+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999998874 778899999999999998865
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.25 E-value=0.79 Score=42.10 Aligned_cols=34 Identities=29% Similarity=0.809 Sum_probs=25.2
Q ss_pred CCccceeccccCcC----ccccCCCCcccHhhHHHHhc
Q 027341 124 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRI 157 (224)
Q Consensus 124 ~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~ 157 (224)
...+|.||+..... .....|+|.||..|..+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 45789999943222 23567999999999998875
No 110
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.97 E-value=1.4 Score=37.98 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=29.4
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRI 157 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~ 157 (224)
-.-|+.|+..+.+|+..+=||.||..||.+++.
T Consensus 43 FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 355799999999999999999999999988763
No 111
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.24 E-value=0.51 Score=40.48 Aligned_cols=46 Identities=28% Similarity=0.756 Sum_probs=33.7
Q ss_pred CccceeccccCc---C---ccccCCCCcccHhhHHHHhccC-CCCc--ccccccc
Q 027341 125 EEECGICMETNS---K---IVLPNCNHAMCLKCYREWRIRS-QSCP--FCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~---~---~~~~~C~H~Fc~~Ci~~w~~~~-~~CP--~CR~~l~ 170 (224)
+..|++|..+.- + -+.+.|-|.+|.+|..+.+... ..|| -|.+-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 457999986422 2 2344599999999999988664 6799 6876554
No 112
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=79.16 E-value=2.1 Score=44.00 Aligned_cols=57 Identities=30% Similarity=0.640 Sum_probs=40.3
Q ss_pred CCccceeccccCcC-------ccccCCCCcccHhhHH-HHhccCCCCcccccccccccCCCccccc
Q 027341 124 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYM 181 (224)
Q Consensus 124 ~~~~C~IC~~~~~~-------~~~~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~l~~~~~~~~~~~~ 181 (224)
....|-||-+.... ..+-.|+---|+.|++ +..+.++.||.|+...++.. ...++..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k-gsprv~g 80 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK-GSPAILG 80 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCcCc
Confidence 34589999886431 3555688889999995 34466899999999988655 3344444
No 113
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.79 E-value=0.75 Score=44.58 Aligned_cols=36 Identities=31% Similarity=0.698 Sum_probs=28.1
Q ss_pred ccceeccccCc----CccccCCCCcccHhhHHHHhccCCCCc
Q 027341 126 EECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCP 163 (224)
Q Consensus 126 ~~C~IC~~~~~----~~~~~~C~H~Fc~~Ci~~w~~~~~~CP 163 (224)
..|.||+..+. .++.+.|||..|..|....- +.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 56899976554 47888899999999997643 45788
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.91 E-value=0.98 Score=41.49 Aligned_cols=40 Identities=23% Similarity=0.652 Sum_probs=29.7
Q ss_pred CccceeccccCcC------ccccCCCCcccHhhHHHHhccCCCCccc
Q 027341 125 EEECGICMETNSK------IVLPNCNHAMCLKCYREWRIRSQSCPFC 165 (224)
Q Consensus 125 ~~~C~IC~~~~~~------~~~~~C~H~Fc~~Ci~~w~~~~~~CP~C 165 (224)
-..|+.|...... .... |||.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3578888765432 3555 99999999999998877777554
No 115
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=76.45 E-value=2.3 Score=37.94 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=33.6
Q ss_pred CCccceeccccCc-------------------CccccCCCCcccHhhHHHHhcc---------CCCCcccccccc
Q 027341 124 REEECGICMETNS-------------------KIVLPNCNHAMCLKCYREWRIR---------SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~-------------------~~~~~~C~H~Fc~~Ci~~w~~~---------~~~CP~CR~~l~ 170 (224)
.+.+|++|+..-. .-...||||.--.+=..-|.+. +..||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4678999986432 1155689997666777778653 358999988775
No 116
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.17 E-value=0.26 Score=44.90 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=38.4
Q ss_pred CccceeccccCc----CccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~----~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...|+||.+... +...+-|||..+..|+++|+.....||.|+..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 357999987544 3456679999999999999998899999998775
No 117
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.66 E-value=1.7 Score=33.99 Aligned_cols=64 Identities=23% Similarity=0.589 Sum_probs=39.6
Q ss_pred cccCCCccceeccc-cCcCcccc---CCCCcccHhhHHHHhccC----CCCcccccccccccCCCcccccCC
Q 027341 120 ADIEREEECGICME-TNSKIVLP---NCNHAMCLKCYREWRIRS----QSCPFCRDSLKRVNSGDLWVYMDS 183 (224)
Q Consensus 120 ~~~~~~~~C~IC~~-~~~~~~~~---~C~H~Fc~~Ci~~w~~~~----~~CP~CR~~l~~~~~~~~~~~~~~ 183 (224)
...+.+..|.||.. .|.+.+-- =|.-.||..|--+...++ -.|.+|+....-+.....|.....
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~sg 131 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYNSG 131 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHhcC
Confidence 34456789999986 45554211 133346677765544333 269999987766667777777533
No 118
>PLN02189 cellulose synthase
Probab=74.02 E-value=2.8 Score=43.02 Aligned_cols=56 Identities=29% Similarity=0.636 Sum_probs=39.5
Q ss_pred CccceeccccCcC-------ccccCCCCcccHhhHHH-HhccCCCCcccccccccccCCCccccc
Q 027341 125 EEECGICMETNSK-------IVLPNCNHAMCLKCYRE-WRIRSQSCPFCRDSLKRVNSGDLWVYM 181 (224)
Q Consensus 125 ~~~C~IC~~~~~~-------~~~~~C~H~Fc~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~ 181 (224)
...|.||-+.... ..+-.|+--.|..|++- ..+.+++||.|+...++.. ...++..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k-gs~~v~g 97 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK-GSPRVEG 97 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc-CCCCcCC
Confidence 4579999986441 34556888899999954 3356799999999988655 3344443
No 119
>PLN02400 cellulose synthase
Probab=71.13 E-value=3.2 Score=42.76 Aligned_cols=56 Identities=25% Similarity=0.584 Sum_probs=39.5
Q ss_pred CccceeccccCcC-------ccccCCCCcccHhhHHH-HhccCCCCcccccccccccCCCccccc
Q 027341 125 EEECGICMETNSK-------IVLPNCNHAMCLKCYRE-WRIRSQSCPFCRDSLKRVNSGDLWVYM 181 (224)
Q Consensus 125 ~~~C~IC~~~~~~-------~~~~~C~H~Fc~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~ 181 (224)
...|-||-+..-. ..+-.|+---|+.|++- ..+.++.||.|+...++.. ...++..
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K-gsprV~G 99 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK-GSPRVEG 99 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc-CCCCCCc
Confidence 3589999986431 35556888899999953 3456799999999988654 3344443
No 120
>PLN02436 cellulose synthase A
Probab=70.64 E-value=3.7 Score=42.30 Aligned_cols=56 Identities=29% Similarity=0.630 Sum_probs=39.2
Q ss_pred CccceeccccCcC-------ccccCCCCcccHhhHHHH-hccCCCCcccccccccccCCCccccc
Q 027341 125 EEECGICMETNSK-------IVLPNCNHAMCLKCYREW-RIRSQSCPFCRDSLKRVNSGDLWVYM 181 (224)
Q Consensus 125 ~~~C~IC~~~~~~-------~~~~~C~H~Fc~~Ci~~w-~~~~~~CP~CR~~l~~~~~~~~~~~~ 181 (224)
...|.||-+.... ..+-.|+--.|..|++-= .+.+++||.|+...++.. ...++..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k-gs~~~~~ 99 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK-GSPRVEG 99 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc-CCCCcCC
Confidence 3589999986431 345568888999999543 355789999999988655 3334433
No 121
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=69.45 E-value=4.1 Score=41.86 Aligned_cols=58 Identities=26% Similarity=0.540 Sum_probs=40.5
Q ss_pred CCccceeccccCcC-------ccccCCCCcccHhhHHH-HhccCCCCcccccccccccCCCcccccC
Q 027341 124 REEECGICMETNSK-------IVLPNCNHAMCLKCYRE-WRIRSQSCPFCRDSLKRVNSGDLWVYMD 182 (224)
Q Consensus 124 ~~~~C~IC~~~~~~-------~~~~~C~H~Fc~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~~ 182 (224)
....|.||-+.... ..+-.|+--.|..|++- ..+.++.||.|+....+.. ...++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~-~~~~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK-GCPRVEGD 79 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCccCC
Confidence 34679999886431 34556888899999953 3456799999999988655 34444443
No 122
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=69.09 E-value=3.6 Score=36.73 Aligned_cols=45 Identities=7% Similarity=-0.156 Sum_probs=36.0
Q ss_pred CCccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...+|-.|-+..-.....+|+|. ||..|.. +.-+.+||.|.....
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce
Confidence 44689999887777788899996 9999987 556789999976554
No 123
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=68.65 E-value=0.76 Score=40.36 Aligned_cols=44 Identities=27% Similarity=0.641 Sum_probs=23.0
Q ss_pred CCccceeccccCcCccccC-----CCCcccHhhHHHHhccCCCCccccc
Q 027341 124 REEECGICMETNSKIVLPN-----CNHAMCLKCYREWRIRSQSCPFCRD 167 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~-----C~H~Fc~~Ci~~w~~~~~~CP~CR~ 167 (224)
....|+||-....-.++.. -.|.+|..|-..|......||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3468999987644322221 2567999999999998899999965
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=68.16 E-value=2.7 Score=35.43 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=36.7
Q ss_pred CccceeccccCcC-ccccCCCCcccHhhHHHHhccCCCCccccccc
Q 027341 125 EEECGICMETNSK-IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 169 (224)
Q Consensus 125 ~~~C~IC~~~~~~-~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l 169 (224)
-..|.+|...... ...-+|+-.+|..|+..++++...||.|..-+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 3679999986554 56678888999999999999999999995433
No 125
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.93 E-value=3.5 Score=26.50 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=18.9
Q ss_pred ccceeccccCcCcc-ccCCCCcccHhhHHHHhcc-----CCCCcccccc
Q 027341 126 EECGICMETNSKIV-LPNCNHAMCLKCYREWRIR-----SQSCPFCRDS 168 (224)
Q Consensus 126 ~~C~IC~~~~~~~~-~~~C~H~Fc~~Ci~~w~~~-----~~~CP~CR~~ 168 (224)
..|++....+..|+ -..|.|.-|.+= ..|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 46888888777664 457999866432 233322 2369999764
No 126
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.17 E-value=4 Score=35.33 Aligned_cols=56 Identities=14% Similarity=0.313 Sum_probs=39.8
Q ss_pred CccceeccccCcC----ccccCCCCcccHhhHHHHhccCCCCcccccccccccCCCcccccCCcc
Q 027341 125 EEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRD 185 (224)
Q Consensus 125 ~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~ 185 (224)
.+.|+|---.++. .++-+|||.|-.+-+.+.- +..|++|.+.+. ..|..+.....+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~---~~dvIvlNg~~E 170 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ---EDDVIVLNGTEE 170 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc---ccCeEeeCCCHH
Confidence 4678877554443 5677899999988877643 679999999886 455555555444
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.89 E-value=4.6 Score=39.97 Aligned_cols=42 Identities=17% Similarity=0.478 Sum_probs=32.8
Q ss_pred ccceeccccCcC--ccccCCCCcccHhhHHHHhccCCCCcc--ccc
Q 027341 126 EECGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPF--CRD 167 (224)
Q Consensus 126 ~~C~IC~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~--CR~ 167 (224)
..|.+|-..... .-..-|||.-|.+|+..|......||. |-.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 368888766554 345579999999999999999888887 643
No 128
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=65.19 E-value=2.1 Score=39.30 Aligned_cols=46 Identities=24% Similarity=0.659 Sum_probs=0.0
Q ss_pred CccceeccccCc-------------------CccccCCCCcccHhhHHHHhcc---------CCCCcccccccc
Q 027341 125 EEECGICMETNS-------------------KIVLPNCNHAMCLKCYREWRIR---------SQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~-------------------~~~~~~C~H~Fc~~Ci~~w~~~---------~~~CP~CR~~l~ 170 (224)
..+|++|+..-. .-+.-||||.--.+...-|.+- +..||+|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999986422 1255689998888888889754 258999988886
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.98 E-value=5.7 Score=35.59 Aligned_cols=46 Identities=28% Similarity=0.656 Sum_probs=36.6
Q ss_pred ccceeccccCc--C--ccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 126 EECGICMETNS--K--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 126 ~~C~IC~~~~~--~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
..|+||.+... + ..-.+|+|..|..|+..-...+.+||.||.+..+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 57999998652 2 3444789999999999888889999999976653
No 130
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=64.66 E-value=2.2 Score=38.06 Aligned_cols=44 Identities=20% Similarity=0.539 Sum_probs=32.6
Q ss_pred CCccceeccccCcCccc---cC--CCCcccHhhHHHHhccCCCCccccc
Q 027341 124 REEECGICMETNSKIVL---PN--CNHAMCLKCYREWRIRSQSCPFCRD 167 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~---~~--C~H~Fc~~Ci~~w~~~~~~CP~CR~ 167 (224)
....|++|-....-.+. .. =.|..|..|-..|......||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45789999876532211 12 2456899999999999999999975
No 131
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=64.41 E-value=2.2 Score=38.00 Aligned_cols=44 Identities=20% Similarity=0.518 Sum_probs=32.6
Q ss_pred CccceeccccCcCcccc----CC--CCcccHhhHHHHhccCCCCcccccc
Q 027341 125 EEECGICMETNSKIVLP----NC--NHAMCLKCYREWRIRSQSCPFCRDS 168 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~----~C--~H~Fc~~Ci~~w~~~~~~CP~CR~~ 168 (224)
...|++|-....-.++. .= .|..|..|-..|......||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 35899998865432221 22 3568999999999999999999763
No 132
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=63.49 E-value=3.8 Score=28.07 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=8.7
Q ss_pred cccHhhHHHHhc
Q 027341 146 AMCLKCYREWRI 157 (224)
Q Consensus 146 ~Fc~~Ci~~w~~ 157 (224)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 133
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=63.30 E-value=3.9 Score=36.50 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=32.6
Q ss_pred Cccceecccc---CcCccccCCCCcccHhhHHHHhcc---CCCCcccc
Q 027341 125 EEECGICMET---NSKIVLPNCNHAMCLKCYREWRIR---SQSCPFCR 166 (224)
Q Consensus 125 ~~~C~IC~~~---~~~~~~~~C~H~Fc~~Ci~~w~~~---~~~CP~CR 166 (224)
-+.|++=.+. .+.|+.+.|||..-..-++...++ +..||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3578877664 345889999999999999887765 36899994
No 134
>PLN02195 cellulose synthase A
Probab=61.12 E-value=8.2 Score=39.49 Aligned_cols=46 Identities=17% Similarity=0.469 Sum_probs=34.1
Q ss_pred CccceeccccCc-----C--ccccCCCCcccHhhHHHH-hccCCCCcccccccc
Q 027341 125 EEECGICMETNS-----K--IVLPNCNHAMCLKCYREW-RIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~-----~--~~~~~C~H~Fc~~Ci~~w-~~~~~~CP~CR~~l~ 170 (224)
...|.||-+... + ..+-.|+---|+.|++-= .+.++.||.|+...+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 357999987433 1 355578888999999543 345789999998776
No 135
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=4.4 Score=35.69 Aligned_cols=34 Identities=26% Similarity=0.594 Sum_probs=28.0
Q ss_pred CccceeccccCcCccccCC----CCcccHhhHHHHhcc
Q 027341 125 EEECGICMETNSKIVLPNC----NHAMCLKCYREWRIR 158 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C----~H~Fc~~Ci~~w~~~ 158 (224)
...|.+|.|..++.-...| .|-||.-|-++-++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3679999999998766666 789999999888765
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.90 E-value=10 Score=28.79 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=32.2
Q ss_pred ccceeccccCcCc--------------cccCCCCcccHhhHHHHhccCCCCcccc
Q 027341 126 EECGICMETNSKI--------------VLPNCNHAMCLKCYREWRIRSQSCPFCR 166 (224)
Q Consensus 126 ~~C~IC~~~~~~~--------------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR 166 (224)
..|--|...+.++ ....|++.||.+|=.-+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588888876643 2578999999999877777778899995
No 137
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=57.50 E-value=7.4 Score=25.30 Aligned_cols=28 Identities=25% Similarity=0.696 Sum_probs=15.6
Q ss_pred cccCCCCcccHhhHHHHhccCCCCcccc
Q 027341 139 VLPNCNHAMCLKCYREWRIRSQSCPFCR 166 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR 166 (224)
..+.|++.||..|=.=..+.-..||-|.
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhhhccccCCcCCC
Confidence 3457999999999544445567899884
No 138
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.06 E-value=4.5 Score=35.84 Aligned_cols=50 Identities=24% Similarity=0.544 Sum_probs=39.6
Q ss_pred CCccceeccccCcCcc-ccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 124 REEECGICMETNSKIV-LPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~-~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
....|-+|.....-+. ...|+|.||..|-..|......||.|+....-+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVL 154 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCcee
Confidence 4467889988766553 3459999999999999999999999998766443
No 139
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=54.56 E-value=3.2 Score=27.17 Aligned_cols=19 Identities=26% Similarity=1.008 Sum_probs=15.1
Q ss_pred cccCCCCcccHhhHHHHhc
Q 027341 139 VLPNCNHAMCLKCYREWRI 157 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~ 157 (224)
....|+|.||..|..+|..
T Consensus 42 ~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 42 TCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred ECCCCCCeECCCCCCcCCC
Confidence 3447899999999988854
No 140
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.71 E-value=6.6 Score=37.65 Aligned_cols=44 Identities=25% Similarity=0.757 Sum_probs=36.1
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
....|.+|++.. ....++|. +..|+..|...+..||.|++.+..
T Consensus 478 ~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 478 PNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred ccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhc
Confidence 457899999887 66666788 688999999999999999987753
No 141
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.96 E-value=9.8 Score=37.95 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=29.5
Q ss_pred CCCccceeccccCc-------CccccCCCCcccHhhHHHHhccCCCCccc
Q 027341 123 EREEECGICMETNS-------KIVLPNCNHAMCLKCYREWRIRSQSCPFC 165 (224)
Q Consensus 123 ~~~~~C~IC~~~~~-------~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~C 165 (224)
..+..|.-|.+... ..+...|||.||..|+..-..+++ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 34568999998543 346678999999999966554443 5444
No 142
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=51.15 E-value=17 Score=27.50 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=28.7
Q ss_pred CCccceeccccCc-----CccccCCCCcccHhhHHHHhccC--CCCccccccc
Q 027341 124 REEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~-----~~~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~l 169 (224)
.+..|.+|...+. ......|+|.+|..|-.. ..+. -.|.+|...-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHHH
Confidence 5678999987543 246678999999999644 1111 2588887643
No 143
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=50.68 E-value=10 Score=32.97 Aligned_cols=47 Identities=19% Similarity=0.626 Sum_probs=35.0
Q ss_pred CccceeccccCcC----ccccCCC-----CcccHhhHHHHhc--cCCCCccccccccc
Q 027341 125 EEECGICMETNSK----IVLPNCN-----HAMCLKCYREWRI--RSQSCPFCRDSLKR 171 (224)
Q Consensus 125 ~~~C~IC~~~~~~----~~~~~C~-----H~Fc~~Ci~~w~~--~~~~CP~CR~~l~~ 171 (224)
+..|-||.+.... +...||. +..|..|+..|.. ....|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999985542 4566664 2369999999997 56789999886653
No 144
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.21 E-value=14 Score=36.45 Aligned_cols=44 Identities=30% Similarity=0.795 Sum_probs=35.8
Q ss_pred cceeccccCcCccccCCCC-cccHhhHHHHh--cc----CCCCcccccccc
Q 027341 127 ECGICMETNSKIVLPNCNH-AMCLKCYREWR--IR----SQSCPFCRDSLK 170 (224)
Q Consensus 127 ~C~IC~~~~~~~~~~~C~H-~Fc~~Ci~~w~--~~----~~~CP~CR~~l~ 170 (224)
.|+||-....-...-.||| ..|..|..+.. .. +..||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999998888888889999 69999997764 33 467899998654
No 145
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.46 E-value=6.2 Score=31.98 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=19.1
Q ss_pred CCccceeccccCcC---ccccCCCCcccH
Q 027341 124 REEECGICMETNSK---IVLPNCNHAMCL 149 (224)
Q Consensus 124 ~~~~C~IC~~~~~~---~~~~~C~H~Fc~ 149 (224)
..-+|.||+|+... ...+||--++|+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 44689999998774 466788777664
No 146
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.39 E-value=5.9 Score=36.43 Aligned_cols=29 Identities=34% Similarity=0.799 Sum_probs=0.0
Q ss_pred cccCCCCcccHhhHHHHhcc------CCCCcccccccc
Q 027341 139 VLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 170 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~l~ 170 (224)
+-++|||.+.. ..|... ...||+||..=.
T Consensus 305 VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 305 VYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred eeccccceeee---cccccccccccccccCCCccccCC
Confidence 66789998765 356432 468999997543
No 147
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.27 E-value=12 Score=38.44 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=34.0
Q ss_pred CCccceeccccCcCccccCCCC-----cccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNH-----AMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H-----~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
....|+-|-.......++.||. .||..| .+......||.|.....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCC
Confidence 3467999988777778888985 499999 33344567999987765
No 148
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=48.26 E-value=3.7 Score=22.06 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=6.5
Q ss_pred HHhccCCCCccccc
Q 027341 154 EWRIRSQSCPFCRD 167 (224)
Q Consensus 154 ~w~~~~~~CP~CR~ 167 (224)
+......-||.|-.
T Consensus 8 ~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 8 EIEDDAKFCPNCGT 21 (23)
T ss_pred CCCCcCcchhhhCC
Confidence 33334445555544
No 149
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.19 E-value=1.9 Score=29.96 Aligned_cols=43 Identities=21% Similarity=0.541 Sum_probs=23.9
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
..|+.|...+.... +|..|..|-..+ .....||-|..++..+.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~-~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDY-KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EE-EEEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC----CEEECccccccc-eecccCCCcccHHHHHH
Confidence 46899987644322 788888887653 33468999999987554
No 150
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=48.09 E-value=7.3 Score=37.71 Aligned_cols=26 Identities=31% Similarity=0.712 Sum_probs=19.5
Q ss_pred cccCCCCcccHhhHHHHhccCCCCccccc
Q 027341 139 VLPNCNHAMCLKCYREWRIRSQSCPFCRD 167 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 167 (224)
....|++.||..|... .+.-||.|-.
T Consensus 533 rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 533 RCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 4556999999999654 3445999954
No 151
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=48.00 E-value=5.3 Score=24.62 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=17.5
Q ss_pred cCCCCcccHhhHHHHhccCCCCccccc-ccccc
Q 027341 141 PNCNHAMCLKCYREWRIRSQSCPFCRD-SLKRV 172 (224)
Q Consensus 141 ~~C~H~Fc~~Ci~~w~~~~~~CP~CR~-~l~~~ 172 (224)
..|||.|-...-..= .....||.|.. .+.++
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~ 40 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGSTEVRRV 40 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCCCceEEe
Confidence 368877754321000 23468999988 55543
No 152
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=47.23 E-value=13 Score=30.98 Aligned_cols=39 Identities=28% Similarity=0.750 Sum_probs=27.2
Q ss_pred CCccceecccc-----Cc---CccccCCCCcccHhhHHHHhccCCCCccccc
Q 027341 124 REEECGICMET-----NS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 167 (224)
Q Consensus 124 ~~~~C~IC~~~-----~~---~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 167 (224)
..+.|.+|-+. |. ......|+..||..|..+ ..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 34678888753 11 124567999999999752 67999954
No 153
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=46.17 E-value=7 Score=26.33 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=16.6
Q ss_pred CCccceeccccCcCc----cccCCCCcccHhhHHHH
Q 027341 124 REEECGICMETNSKI----VLPNCNHAMCLKCYREW 155 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~~w 155 (224)
+...|.+|...|.-. ....||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 346799999887532 34469999999997543
No 154
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=45.01 E-value=17 Score=27.09 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=17.8
Q ss_pred CCcccHhhHHHHhcc---------CCCCccccc
Q 027341 144 NHAMCLKCYREWRIR---------SQSCPFCRD 167 (224)
Q Consensus 144 ~H~Fc~~Ci~~w~~~---------~~~CP~CR~ 167 (224)
.=.||..|+..+... .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 556999999776543 236999986
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.32 E-value=18 Score=30.97 Aligned_cols=28 Identities=21% Similarity=0.660 Sum_probs=22.5
Q ss_pred ccHhhHHHHhccCCCCcccccccccccC
Q 027341 147 MCLKCYREWRIRSQSCPFCRDSLKRVNS 174 (224)
Q Consensus 147 Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~ 174 (224)
-|.+|......+...||+|+..-..-++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCC
Confidence 4999999888888999999987654443
No 156
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.04 E-value=3.8 Score=35.78 Aligned_cols=43 Identities=28% Similarity=0.653 Sum_probs=32.9
Q ss_pred ccceeccccCc------CccccC--------CCCcccHhhHHHHhccC-CCCcccccc
Q 027341 126 EECGICMETNS------KIVLPN--------CNHAMCLKCYREWRIRS-QSCPFCRDS 168 (224)
Q Consensus 126 ~~C~IC~~~~~------~~~~~~--------C~H~Fc~~Ci~~w~~~~-~~CP~CR~~ 168 (224)
..|.||..... .+.... |||..|..|+..-+.+. ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 56999986544 245555 99999999999887543 689999874
No 157
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=43.26 E-value=9.4 Score=24.67 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=6.0
Q ss_pred CCCcccccccc
Q 027341 160 QSCPFCRDSLK 170 (224)
Q Consensus 160 ~~CP~CR~~l~ 170 (224)
..||+|..+|.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 38999999886
No 158
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=42.89 E-value=13 Score=21.25 Aligned_cols=34 Identities=24% Similarity=0.575 Sum_probs=19.9
Q ss_pred ceeccccCcC--ccccCCCCcccHhhHHHHhccCCCCccccccc
Q 027341 128 CGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 169 (224)
Q Consensus 128 C~IC~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l 169 (224)
|..|.+.+.. .....=+..||..|. .|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccCC--------CCcccCCcC
Confidence 6677665554 233334566666663 677777655
No 159
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.34 E-value=19 Score=23.05 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=21.6
Q ss_pred ccceeccccCcC----ccccCCCCcccHhhHHHHh
Q 027341 126 EECGICMETNSK----IVLPNCNHAMCLKCYREWR 156 (224)
Q Consensus 126 ~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~ 156 (224)
..|.+|-..|.. .....||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 458888765543 3445799999999986543
No 160
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=41.97 E-value=18 Score=30.88 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=20.9
Q ss_pred ccHhhHHHHhccCCCCccccccccccc
Q 027341 147 MCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 147 Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
-|.+|......+...||+|+..-..-+
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCC
Confidence 478888888778899999987665433
No 161
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=41.42 E-value=15 Score=23.70 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=20.9
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhc--cCCCCccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRI--RSQSCPFCRD 167 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CP~CR~ 167 (224)
.+.|+.|-+.+.... + + ..|...-.. +...||+|..
T Consensus 2 ~f~CP~C~~~~~~~~-L-~-----~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-L-V-----EHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHH-H-H-----HHHHhHCcCCCCCccCCCchh
Confidence 467999988544332 2 2 334443332 2467999975
No 163
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=41.00 E-value=27 Score=30.56 Aligned_cols=39 Identities=28% Similarity=0.559 Sum_probs=23.2
Q ss_pred ccceeccccCcCcccc-CCCC----cccHhhHHHHhc-cCCCCcc
Q 027341 126 EECGICMETNSKIVLP-NCNH----AMCLKCYREWRI-RSQSCPF 164 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~-~C~H----~Fc~~Ci~~w~~-~~~~CP~ 164 (224)
..|.||++....++-- .=-| .=|..|.++|.. -++.||.
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 4577777765443211 1122 245899999974 4678983
No 164
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=39.04 E-value=6.8 Score=26.35 Aligned_cols=15 Identities=27% Similarity=0.724 Sum_probs=10.4
Q ss_pred CCcccccccccccCC
Q 027341 161 SCPFCRDSLKRVNSG 175 (224)
Q Consensus 161 ~CP~CR~~l~~~~~~ 175 (224)
.||.||.++..+..+
T Consensus 10 aCP~~kg~L~~~~~~ 24 (60)
T COG2835 10 ACPVCKGPLVYDEEK 24 (60)
T ss_pred eccCcCCcceEeccC
Confidence 699999887644433
No 165
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=37.65 E-value=28 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.624 Sum_probs=23.9
Q ss_pred CccceeccccCc--C--ccccCCCCcccHhhHHH
Q 027341 125 EEECGICMETNS--K--IVLPNCNHAMCLKCYRE 154 (224)
Q Consensus 125 ~~~C~IC~~~~~--~--~~~~~C~H~Fc~~Ci~~ 154 (224)
...|.+|-+.+. + .+.+.||-.+|+.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 357999999884 2 47788999999999754
No 166
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.31 E-value=8.5 Score=21.34 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=3.1
Q ss_pred ceecccc
Q 027341 128 CGICMET 134 (224)
Q Consensus 128 C~IC~~~ 134 (224)
|+-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4444443
No 167
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.25 E-value=16 Score=26.76 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=10.6
Q ss_pred cccHhhHHHHhc
Q 027341 146 AMCLKCYREWRI 157 (224)
Q Consensus 146 ~Fc~~Ci~~w~~ 157 (224)
.||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 168
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=34.59 E-value=13 Score=28.14 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=17.9
Q ss_pred CCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 142 NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 142 ~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
+|+|. .+.+.+...|+.|+++++-
T Consensus 74 ~C~K~------TKmLGr~D~CM~C~~pLTL 97 (114)
T PF11023_consen 74 NCGKQ------TKMLGRVDACMHCKEPLTL 97 (114)
T ss_pred CCCCh------HhhhchhhccCcCCCcCcc
Confidence 67763 2456677899999999983
No 169
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.53 E-value=31 Score=22.89 Aligned_cols=42 Identities=21% Similarity=0.508 Sum_probs=26.8
Q ss_pred cceeccccCcCc--cccCCCC--cccHhhHHHHhccCCCCcccccccc
Q 027341 127 ECGICMETNSKI--VLPNCNH--AMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 127 ~C~IC~~~~~~~--~~~~C~H--~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.|-.|-...... --.-|.+ .||..|.+..+ ...||.|-..+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 455565443321 1122655 59999998876 468999988764
No 170
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=34.46 E-value=12 Score=37.64 Aligned_cols=43 Identities=33% Similarity=0.821 Sum_probs=31.7
Q ss_pred CccceeccccCc--CccccCCCCcccHhhHHHHh--cc----CCCCccccc
Q 027341 125 EEECGICMETNS--KIVLPNCNHAMCLKCYREWR--IR----SQSCPFCRD 167 (224)
Q Consensus 125 ~~~C~IC~~~~~--~~~~~~C~H~Fc~~Ci~~w~--~~----~~~CP~CR~ 167 (224)
...|..|..... --+...|||.+|..|++.|- .. ...|++|+.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 356899987544 36888999999999999994 11 246777764
No 171
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.45 E-value=19 Score=28.86 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=20.2
Q ss_pred CCcccHhhHHHHhccCCCCccccccccc
Q 027341 144 NHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 144 ~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
.+.||.+|-.+-.. +||.|..+|..
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~IrG 51 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPIRG 51 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCCCC
Confidence 46799999877654 69999999874
No 172
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.02 E-value=46 Score=30.92 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=24.9
Q ss_pred CCCccceeccccCc------CccccCCCCcccHhhHHHHh
Q 027341 123 EREEECGICMETNS------KIVLPNCNHAMCLKCYREWR 156 (224)
Q Consensus 123 ~~~~~C~IC~~~~~------~~~~~~C~H~Fc~~Ci~~w~ 156 (224)
.....|+-|.-... +...+.|+|.||+-|-...-
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 34567999986544 35788899999999975543
No 173
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=32.28 E-value=30 Score=31.21 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=26.4
Q ss_pred ccceeccccCcC---ccccCCCCcccHhhHHHHhccCCCCcccc
Q 027341 126 EECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCR 166 (224)
Q Consensus 126 ~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR 166 (224)
..|-.|.+.... -....|.|.||.+|=.-..+.-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 447777443322 24556888898888655445556788886
No 174
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.01 E-value=21 Score=27.83 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=16.2
Q ss_pred eeccccCcCccccCCCCcccHh
Q 027341 129 GICMETNSKIVLPNCNHAMCLK 150 (224)
Q Consensus 129 ~IC~~~~~~~~~~~C~H~Fc~~ 150 (224)
-||.+.......-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 4777766666666799999973
No 175
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=30.33 E-value=6.5 Score=25.61 Aligned_cols=19 Identities=32% Similarity=0.989 Sum_probs=14.9
Q ss_pred cccCCCCcccHhhHHHHhc
Q 027341 139 VLPNCNHAMCLKCYREWRI 157 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~ 157 (224)
....|++.||..|-.+|..
T Consensus 42 ~C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 42 TCPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp CTTSCCSEECSSSTSESCT
T ss_pred ECCCCCCcCccccCcccCC
Confidence 4455999999999888743
No 176
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=29.05 E-value=29 Score=32.55 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=6.5
Q ss_pred CCCCcccHhhH
Q 027341 142 NCNHAMCLKCY 152 (224)
Q Consensus 142 ~C~H~Fc~~Ci 152 (224)
-|||+-|..|-
T Consensus 151 ~CgH~cH~dCA 161 (446)
T PF07227_consen 151 VCGHWCHLDCA 161 (446)
T ss_pred CCCceehhhhh
Confidence 36666666664
No 177
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=28.70 E-value=32 Score=21.36 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=15.5
Q ss_pred ceeccccCcCccccCCCCcccHh
Q 027341 128 CGICMETNSKIVLPNCNHAMCLK 150 (224)
Q Consensus 128 C~IC~~~~~~~~~~~C~H~Fc~~ 150 (224)
|..|.....--+.+.|+|.+|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 66777555455667788888743
No 178
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.45 E-value=30 Score=36.56 Aligned_cols=46 Identities=24% Similarity=0.534 Sum_probs=31.9
Q ss_pred CccceeccccCcCccccCCCCc-----ccHhhHHHHhcc---CCCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHA-----MCLKCYREWRIR---SQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~-----Fc~~Ci~~w~~~---~~~CP~CR~~l~ 170 (224)
...|+-|-.......++.||+. .|..|-.+.-.. ...||.|..++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 3689999886666688889865 488886543211 237999987765
No 179
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.41 E-value=24 Score=32.94 Aligned_cols=35 Identities=26% Similarity=0.652 Sum_probs=25.7
Q ss_pred CccccCCCCcccHhhHHHHhcc--------------------------CCCCccccccccc
Q 027341 137 KIVLPNCNHAMCLKCYREWRIR--------------------------SQSCPFCRDSLKR 171 (224)
Q Consensus 137 ~~~~~~C~H~Fc~~Ci~~w~~~--------------------------~~~CP~CR~~l~~ 171 (224)
..+.-.|||.||..|..+|... .+.||.|..++..
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek 238 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEK 238 (444)
T ss_pred cceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhc
Confidence 3455679999999998777532 2469999888764
No 180
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.26 E-value=43 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=19.9
Q ss_pred CCcccHhhHHHHhccCCCCcccccccc
Q 027341 144 NHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 144 ~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.|.||..|.+.-+. ..||.|-..+.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhh
Confidence 57899999987553 58999987764
No 181
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.14 E-value=20 Score=32.19 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=36.3
Q ss_pred CCccceeccccCcCccccCCCCc-ccHhhHHHH-hccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHA-MCLKCYREW-RIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w-~~~~~~CP~CR~~l~ 170 (224)
....|.+|++.-.....-+|+|. ||..|.-+- .++..+||+|...+.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 34678899987777777789996 999997554 466778999987654
No 182
>PRK11595 DNA utilization protein GntX; Provisional
Probab=24.88 E-value=59 Score=27.31 Aligned_cols=38 Identities=24% Similarity=0.515 Sum_probs=19.5
Q ss_pred cceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccc
Q 027341 127 ECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 169 (224)
Q Consensus 127 ~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l 169 (224)
.|.+|-...... .+..|..|...+......||.|-.++
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCcC
Confidence 477776543211 12356667665533234566665543
No 183
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.71 E-value=40 Score=26.22 Aligned_cols=22 Identities=36% Similarity=0.872 Sum_probs=16.3
Q ss_pred cccHhhHHHHhccCCCCcccccccc
Q 027341 146 AMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 146 ~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.||.+|-..-. ..||.|..++.
T Consensus 29 afcskcgeati---~qcp~csasir 50 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIR 50 (160)
T ss_pred HHHhhhchHHH---hcCCccCCccc
Confidence 58888876544 35999988876
No 184
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=22.55 E-value=63 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=22.2
Q ss_pred cccCCCCcccHhhHHHHhccCCCCcccccc
Q 027341 139 VLPNCNHAMCLKCYREWRIRSQSCPFCRDS 168 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~ 168 (224)
+..|-|.+||++|-..=......|-+|-..
T Consensus 42 vqVPtGpWfCrKCesqeraarvrCeLCP~k 71 (900)
T KOG0956|consen 42 VQVPTGPWFCRKCESQERAARVRCELCPHK 71 (900)
T ss_pred EecCCCchhhhhhhhhhhhccceeecccCc
Confidence 566789999999987655555677777543
No 185
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=22.43 E-value=48 Score=30.74 Aligned_cols=50 Identities=30% Similarity=0.715 Sum_probs=34.0
Q ss_pred CCccceeccccCcC--ccccCCCCcccHhhHHHHhccC------------------------CCCccccccccccc
Q 027341 124 REEECGICMETNSK--IVLPNCNHAMCLKCYREWRIRS------------------------QSCPFCRDSLKRVN 173 (224)
Q Consensus 124 ~~~~C~IC~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~------------------------~~CP~CR~~l~~~~ 173 (224)
...+|+||+-.... -...-|.-..|..|..+..--+ ..||.|..+..++.
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~ve 148 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVE 148 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCccccee
Confidence 44789999875443 2333477889999987654221 27999998776554
No 186
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=21.94 E-value=78 Score=27.94 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=26.7
Q ss_pred CcccccccccccCCCcccccCCcccccccccchHHHHHHHHHHhhCCCCCCCccccc
Q 027341 162 CPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDP 218 (224)
Q Consensus 162 CP~CR~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~i~~lp~~~~~~~~~~ 218 (224)
|+.||.-.....|+-.|+.+.. ..+..+.++.+...+...|..-+-.++.+
T Consensus 60 C~~C~~i~~~~HPD~~~i~p~~------~~I~idqIR~l~~~~~~~p~~~~~kV~II 110 (290)
T PRK07276 60 CRSCRLIEQGEFSDVTVIEPQG------QVIKTDTIRELVKNFSQSGYEGKQQVFII 110 (290)
T ss_pred CHHHHHHhcCCCCCeeeecCCC------CcCCHHHHHHHHHHHhhCcccCCcEEEEe
Confidence 4555544444445444444321 23556777777777776666544444433
No 187
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=95 Score=27.47 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=50.8
Q ss_pred CCCccceeccccCcCcccc----CCC--CcccHhhHHHHhccCCCCcccccccccccCCCcccccC-CcccccccccchH
Q 027341 123 EREEECGICMETNSKIVLP----NCN--HAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMD-SRDIIDSATVTRE 195 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~----~C~--H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~-~~~~~d~~~~~~~ 195 (224)
+....|++|-......+.. .-| -.-|.-|...|..-...|-.|-.. ..-..|-... ....+.+++=.+=
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t----~~l~y~sl~s~E~A~vkAEtC~~C 258 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS----KKLHYWSLESSELAAVKAETCGDC 258 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc----CCccceeccchhhhHhhhhcCCcH
Confidence 4456899998865543222 122 235999999999888899999652 2334454433 2222333332222
Q ss_pred HHHHHHHHHhhCCCCCCCc
Q 027341 196 NLRRLFLYIDKLPLIIPDN 214 (224)
Q Consensus 196 ~~~~l~~~i~~lp~~~~~~ 214 (224)
|-=--..|.+|=|.+.+.+
T Consensus 259 ~sYlKilyqekdp~veavA 277 (308)
T COG3058 259 NSYLKILYQEKDPKVEAVA 277 (308)
T ss_pred HHHHHHHHHhcCCccccch
Confidence 2222345777778887754
No 188
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=21.18 E-value=44 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=17.8
Q ss_pred cCCCCcccccccccccCCCcccccC
Q 027341 158 RSQSCPFCRDSLKRVNSGDLWVYMD 182 (224)
Q Consensus 158 ~~~~CP~CR~~l~~~~~~~~~~~~~ 182 (224)
-.-.||.||+.+..++-.|.++...
T Consensus 8 pei~CPhCRQ~ipALtLTDtYLC~r 32 (163)
T TIGR02652 8 PEIRCPHCRQNIPALTLTDTYLCNR 32 (163)
T ss_pred CcCcCchhhcccchheecceeeccC
Confidence 3457999999887777667666543
No 189
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=21.12 E-value=44 Score=26.40 Aligned_cols=24 Identities=21% Similarity=0.596 Sum_probs=17.3
Q ss_pred CCCCcccccccccccCCCcccccC
Q 027341 159 SQSCPFCRDSLKRVNSGDLWVYMD 182 (224)
Q Consensus 159 ~~~CP~CR~~l~~~~~~~~~~~~~ 182 (224)
.-.||.||+.+..++-.|.++.+.
T Consensus 6 ei~CPhCRq~ipALtLTDtYLC~r 29 (161)
T PF09654_consen 6 EIQCPHCRQTIPALTLTDTYLCPR 29 (161)
T ss_pred cCcCchhhcccchheecceeeccC
Confidence 457999998887777666666543
No 190
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=20.71 E-value=28 Score=22.10 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=19.1
Q ss_pred ceeccccCcCc--cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 128 CGICMETNSKI--VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 128 C~IC~~~~~~~--~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
|+.|-..+... +...-+..||..|. .|-.|+.++.
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 37 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF--------KCSKCGKPLN 37 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS--------BETTTTCBTT
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc--------ccCCCCCccC
Confidence 44555544432 21245666776663 6777777664
No 191
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.68 E-value=60 Score=20.83 Aligned_cols=23 Identities=26% Similarity=0.785 Sum_probs=11.8
Q ss_pred CCCCcccHhhHHHHhccCCCCccc
Q 027341 142 NCNHAMCLKCYREWRIRSQSCPFC 165 (224)
Q Consensus 142 ~C~H~Fc~~Ci~~w~~~~~~CP~C 165 (224)
.|||.|=.. +.........||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 566754221 11112446789887
No 192
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.50 E-value=65 Score=32.69 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=23.5
Q ss_pred ccceeccccCcC-------c--cccCCCCcccHhhHHHHh
Q 027341 126 EECGICMETNSK-------I--VLPNCNHAMCLKCYREWR 156 (224)
Q Consensus 126 ~~C~IC~~~~~~-------~--~~~~C~H~Fc~~Ci~~w~ 156 (224)
..|..|...|.. . -+-.||..||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 569999988752 1 256799999999986543
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.46 E-value=1.1e+02 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=15.5
Q ss_pred ccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 140 LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 140 ~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.+.|.|.-+..=| .+.+.||+|.....
T Consensus 1159 C~~CkH~a~~~EI----s~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1159 CPRCKHRAHQHEI----SKYNCCPLCHSMES 1185 (1189)
T ss_pred ccccccccccccc----cccccCccccChhh
Confidence 3445555444332 23468999987654
No 194
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.23 E-value=45 Score=31.67 Aligned_cols=11 Identities=18% Similarity=0.310 Sum_probs=6.4
Q ss_pred ccceeccccCc
Q 027341 126 EECGICMETNS 136 (224)
Q Consensus 126 ~~C~IC~~~~~ 136 (224)
.-|+-|++...
T Consensus 27 ~yCp~CL~~~p 37 (483)
T PF05502_consen 27 YYCPNCLFEVP 37 (483)
T ss_pred eECccccccCC
Confidence 45666666544
Done!