Query 027341
Match_columns 224
No_of_seqs 257 out of 1764
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:55:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.4 2.6E-14 9E-19 98.1 2.4 49 123-171 8-63 (71)
2 4ayc_A E3 ubiquitin-protein li 99.4 1.4E-13 4.9E-18 107.0 6.5 48 124-171 52-99 (138)
3 2djb_A Polycomb group ring fin 99.4 1.5E-13 5.3E-18 94.9 4.2 50 122-171 12-62 (72)
4 1iym_A EL5; ring-H2 finger, ub 99.4 1.4E-13 4.9E-18 89.9 3.6 48 123-170 3-54 (55)
5 2d8t_A Dactylidin, ring finger 99.4 1.1E-13 3.8E-18 95.4 3.2 48 123-170 13-60 (71)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.6E-13 5.3E-18 93.9 3.8 51 123-173 12-65 (69)
7 2egp_A Tripartite motif-contai 99.4 1.4E-13 4.8E-18 96.4 3.6 50 121-170 8-64 (79)
8 2ea6_A Ring finger protein 4; 99.4 1.1E-13 3.9E-18 94.2 2.1 49 122-170 12-67 (69)
9 1t1h_A Gspef-atpub14, armadill 99.4 1.9E-13 6.5E-18 95.7 3.3 49 122-170 5-54 (78)
10 2ecy_A TNF receptor-associated 99.4 3.5E-13 1.2E-17 91.5 4.4 49 122-170 12-61 (66)
11 2csy_A Zinc finger protein 183 99.4 2.4E-13 8.3E-18 96.0 3.8 48 123-170 13-60 (81)
12 2ecw_A Tripartite motif-contai 99.4 4.5E-13 1.5E-17 94.6 5.0 49 122-170 16-70 (85)
13 2ecn_A Ring finger protein 141 99.4 2.1E-13 7.1E-18 93.5 2.9 49 122-171 12-60 (70)
14 2ecv_A Tripartite motif-contai 99.4 5.5E-13 1.9E-17 94.2 4.9 49 122-170 16-70 (85)
15 2xeu_A Ring finger protein 4; 99.4 9.6E-14 3.3E-18 93.2 0.8 47 124-170 2-55 (64)
16 1chc_A Equine herpes virus-1 r 99.4 3.7E-13 1.3E-17 91.7 3.8 49 124-172 4-53 (68)
17 2yur_A Retinoblastoma-binding 99.4 2.3E-13 8E-18 94.6 2.8 50 121-170 11-63 (74)
18 2ecm_A Ring finger and CHY zin 99.4 2.7E-13 9.3E-18 88.5 2.9 47 124-170 4-54 (55)
19 2ysl_A Tripartite motif-contai 99.3 6.6E-13 2.3E-17 91.6 4.7 49 122-170 17-68 (73)
20 2ect_A Ring finger protein 126 99.3 5.7E-13 2E-17 93.2 4.0 50 122-171 12-64 (78)
21 2ep4_A Ring finger protein 24; 99.3 5.1E-13 1.7E-17 92.6 3.7 50 122-171 12-64 (74)
22 2l0b_A E3 ubiquitin-protein li 99.3 3.6E-13 1.2E-17 97.5 2.9 48 123-170 38-88 (91)
23 1x4j_A Ring finger protein 38; 99.3 2.7E-13 9.2E-18 94.4 2.1 48 123-170 21-71 (75)
24 2ct2_A Tripartite motif protei 99.3 1.1E-12 3.9E-17 93.4 4.9 50 121-170 11-67 (88)
25 2ecl_A Ring-box protein 2; RNF 99.3 7.1E-13 2.4E-17 94.0 3.7 47 124-170 14-75 (81)
26 3lrq_A E3 ubiquitin-protein li 99.3 4.3E-13 1.5E-17 98.7 1.8 47 124-170 21-69 (100)
27 1v87_A Deltex protein 2; ring- 99.3 1.4E-12 4.7E-17 97.7 4.5 48 124-171 24-94 (114)
28 3ztg_A E3 ubiquitin-protein li 99.3 1E-12 3.5E-17 94.8 3.5 50 121-170 9-61 (92)
29 2ysj_A Tripartite motif-contai 99.3 2.5E-12 8.6E-17 86.3 4.1 44 122-165 17-63 (63)
30 2ckl_A Polycomb group ring fin 99.3 1.3E-12 4.5E-17 97.2 2.5 49 123-171 13-62 (108)
31 2ecj_A Tripartite motif-contai 99.3 4.7E-12 1.6E-16 83.3 4.7 44 122-165 12-58 (58)
32 2y43_A E3 ubiquitin-protein li 99.2 2.8E-12 9.4E-17 93.9 3.4 47 124-170 21-68 (99)
33 3fl2_A E3 ubiquitin-protein li 99.2 2.5E-12 8.5E-17 98.0 3.2 47 124-170 51-98 (124)
34 2kr4_A Ubiquitin conjugation f 99.2 2.8E-12 9.5E-17 91.8 3.2 50 121-170 10-59 (85)
35 3dpl_R Ring-box protein 1; ubi 99.2 4.1E-12 1.4E-16 94.8 3.7 47 124-170 36-100 (106)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 2.4E-12 8.3E-17 98.1 2.1 51 123-173 5-62 (133)
37 1jm7_A BRCA1, breast cancer ty 99.2 1.8E-11 6.1E-16 91.1 6.8 46 125-170 21-69 (112)
38 2kre_A Ubiquitin conjugation f 99.2 5.9E-12 2E-16 92.9 3.6 50 121-170 25-74 (100)
39 1g25_A CDK-activating kinase a 99.2 4.2E-12 1.4E-16 85.8 2.4 46 125-170 3-54 (65)
40 1e4u_A Transcriptional repress 99.2 2.7E-11 9.2E-16 85.4 6.1 50 122-171 8-62 (78)
41 1wgm_A Ubiquitin conjugation f 99.2 1E-11 3.4E-16 91.3 4.0 49 122-170 19-68 (98)
42 3hct_A TNF receptor-associated 99.2 5.5E-12 1.9E-16 95.3 2.3 50 121-170 14-64 (118)
43 3l11_A E3 ubiquitin-protein li 99.2 2.3E-12 7.8E-17 96.8 0.0 48 124-171 14-62 (115)
44 1z6u_A NP95-like ring finger p 99.2 1.1E-11 3.6E-16 97.9 3.2 47 124-170 77-124 (150)
45 2vje_A E3 ubiquitin-protein li 99.2 7.4E-12 2.5E-16 84.9 1.8 49 124-172 7-58 (64)
46 2ckl_B Ubiquitin ligase protei 99.1 7.6E-12 2.6E-16 99.8 1.4 47 124-170 53-101 (165)
47 2vje_B MDM4 protein; proto-onc 99.1 1.2E-11 4.2E-16 83.5 1.8 49 124-172 6-57 (63)
48 3knv_A TNF receptor-associated 99.1 1.4E-11 4.8E-16 96.2 2.3 50 121-170 27-77 (141)
49 1rmd_A RAG1; V(D)J recombinati 99.1 2.2E-11 7.5E-16 91.5 2.8 47 124-170 22-69 (116)
50 1bor_A Transcription factor PM 99.1 2.3E-11 7.9E-16 80.1 2.4 45 123-170 4-48 (56)
51 4ap4_A E3 ubiquitin ligase RNF 99.1 1.6E-11 5.4E-16 93.5 0.6 49 123-171 70-125 (133)
52 1jm7_B BARD1, BRCA1-associated 99.1 2.9E-11 1E-15 91.1 2.1 45 124-170 21-66 (117)
53 2c2l_A CHIP, carboxy terminus 99.1 8E-11 2.8E-15 100.2 5.0 50 121-170 204-254 (281)
54 4a0k_B E3 ubiquitin-protein li 99.1 1.5E-11 5E-16 93.2 0.2 47 124-170 47-111 (117)
55 2y1n_A E3 ubiquitin-protein li 99.1 4.4E-11 1.5E-15 107.4 3.0 48 124-171 331-379 (389)
56 4ic3_A E3 ubiquitin-protein li 99.1 2.1E-11 7.1E-16 84.8 0.6 44 125-172 24-68 (74)
57 2f42_A STIP1 homology and U-bo 99.0 3.5E-10 1.2E-14 91.6 5.0 51 120-170 101-152 (179)
58 2yu4_A E3 SUMO-protein ligase 99.0 1.3E-10 4.5E-15 84.4 1.9 48 123-170 5-62 (94)
59 3hcs_A TNF receptor-associated 99.0 1.6E-10 5.5E-15 92.4 2.3 50 121-170 14-64 (170)
60 2d8s_A Cellular modulator of i 98.9 3E-10 1E-14 80.3 2.8 48 123-170 13-69 (80)
61 2ecg_A Baculoviral IAP repeat- 98.9 4E-10 1.4E-14 78.4 3.4 43 125-171 25-68 (75)
62 2ea5_A Cell growth regulator w 98.9 4.1E-10 1.4E-14 77.2 3.1 47 122-172 12-59 (68)
63 2ct0_A Non-SMC element 1 homol 98.9 1.2E-09 4E-14 76.2 5.4 49 123-171 13-64 (74)
64 2yho_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 80.1 0.4 44 125-172 18-62 (79)
65 3t6p_A Baculoviral IAP repeat- 98.7 3E-09 1E-13 94.4 0.8 45 124-172 294-339 (345)
66 3htk_C E3 SUMO-protein ligase 98.7 6.2E-09 2.1E-13 88.6 2.5 48 123-170 179-231 (267)
67 2bay_A PRE-mRNA splicing facto 98.6 8.4E-09 2.9E-13 69.1 1.2 45 126-170 4-49 (61)
68 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.7E-08 5.7E-13 88.9 1.4 48 123-170 306-372 (381)
69 1wim_A KIAA0161 protein; ring 98.5 2.6E-08 8.8E-13 72.0 2.1 45 124-168 4-61 (94)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1E-07 3.5E-12 63.6 3.4 48 123-170 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.3 1.9E-07 6.3E-12 68.0 2.6 47 127-173 3-51 (101)
72 3nw0_A Non-structural maintena 97.7 3E-05 1E-09 65.3 4.3 48 124-171 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0038 1.3E-07 44.8 2.5 32 125-156 3-37 (101)
74 2ko5_A Ring finger protein Z; 93.6 0.033 1.1E-06 39.8 2.1 46 124-170 27-72 (99)
75 3m62_A Ubiquitin conjugation f 93.4 0.072 2.5E-06 52.7 4.9 50 121-170 887-937 (968)
76 2lri_C Autoimmune regulator; Z 88.0 0.32 1.1E-05 32.3 2.6 46 124-169 11-60 (66)
77 1weo_A Cellulose synthase, cat 86.3 2.4 8.3E-05 29.8 6.4 50 124-173 15-72 (93)
78 3u5n_A E3 ubiquitin-protein li 82.9 0.65 2.2E-05 37.5 2.6 46 124-169 6-55 (207)
79 3o36_A Transcription intermedi 82.2 1.5 5E-05 34.6 4.4 46 124-169 3-52 (184)
80 2cs3_A Protein C14ORF4, MY039 80.0 1.2 4E-05 30.9 2.6 36 123-158 13-52 (93)
81 2l5u_A Chromodomain-helicase-D 79.4 1.1 3.9E-05 29.0 2.3 46 122-167 8-57 (61)
82 2yql_A PHD finger protein 21A; 78.4 0.4 1.4E-05 30.6 -0.1 45 123-167 7-55 (56)
83 1wil_A KIAA1045 protein; ring 77.4 3.3 0.00011 28.9 4.3 33 122-155 12-47 (89)
84 1mm2_A MI2-beta; PHD, zinc fin 76.2 0.87 3E-05 29.5 1.1 46 123-168 7-56 (61)
85 1joc_A EEA1, early endosomal a 74.8 9.7 0.00033 28.1 6.7 30 125-154 69-102 (125)
86 1z60_A TFIIH basal transcripti 72.4 2.7 9.1E-05 27.3 2.6 40 126-165 16-58 (59)
87 1wd2_A Ariadne-1 protein homol 68.5 1 3.5E-05 29.3 -0.1 34 125-158 6-47 (60)
88 2ro1_A Transcription intermedi 67.8 6 0.00021 31.4 4.4 44 125-168 2-49 (189)
89 2jmo_A Parkin; IBR, E3 ligase, 67.1 0.62 2.1E-05 32.0 -1.4 20 142-163 55-74 (80)
90 2zet_C Melanophilin; complex, 66.7 3.6 0.00012 31.8 2.8 57 124-181 67-130 (153)
91 1zbd_B Rabphilin-3A; G protein 66.7 5.8 0.0002 29.9 3.9 62 123-184 53-123 (134)
92 1xwh_A Autoimmune regulator; P 63.5 1.5 5E-05 28.8 -0.0 44 124-167 7-54 (66)
93 3ql9_A Transcriptional regulat 63.3 12 0.00041 28.0 5.0 45 123-167 55-110 (129)
94 2lbm_A Transcriptional regulat 63.0 7 0.00024 29.8 3.7 45 123-167 61-116 (142)
95 2puy_A PHD finger protein 21A; 61.0 1.6 5.5E-05 28.0 -0.2 46 124-169 4-53 (60)
96 2ysm_A Myeloid/lymphoid or mix 60.3 2.8 9.7E-05 30.1 1.1 44 123-166 5-55 (111)
97 1fp0_A KAP-1 corepressor; PHD 60.0 3.9 0.00013 28.6 1.7 47 122-168 22-72 (88)
98 2d8v_A Zinc finger FYVE domain 58.1 4 0.00014 27.0 1.4 33 123-156 6-39 (67)
99 2gmg_A Hypothetical protein PF 56.3 3.2 0.00011 30.1 0.7 27 138-169 68-94 (105)
100 1f62_A Transcription factor WS 55.0 5.9 0.0002 24.2 1.8 41 127-167 2-49 (51)
101 2k16_A Transcription initiatio 54.0 3.3 0.00011 27.6 0.5 47 124-170 17-70 (75)
102 3fyb_A Protein of unknown func 53.7 4.6 0.00016 28.9 1.2 12 146-157 41-52 (104)
103 2o35_A Hypothetical protein DU 53.7 4.6 0.00016 28.9 1.2 12 146-157 42-53 (105)
104 1z2q_A LM5-1; membrane protein 53.4 7.3 0.00025 26.6 2.2 31 124-154 20-54 (84)
105 2fiy_A Protein FDHE homolog; F 52.9 1.3 4.5E-05 38.2 -2.1 46 123-168 180-231 (309)
106 2yw8_A RUN and FYVE domain-con 52.4 7 0.00024 26.6 2.0 31 124-154 18-52 (82)
107 1y02_A CARP2, FYVE-ring finger 52.1 1.8 6.2E-05 32.1 -1.2 45 124-168 18-66 (120)
108 1x4u_A Zinc finger, FYVE domai 52.0 7.8 0.00027 26.4 2.2 30 124-153 13-46 (84)
109 2pv0_B DNA (cytosine-5)-methyl 51.7 18 0.0006 32.1 4.9 44 124-167 92-147 (386)
110 3t7l_A Zinc finger FYVE domain 51.6 7.3 0.00025 27.1 2.0 31 125-155 20-54 (90)
111 1we9_A PHD finger family prote 50.4 3.5 0.00012 26.5 0.1 46 123-168 4-58 (64)
112 2e6r_A Jumonji/ARID domain-con 50.2 2.5 8.6E-05 29.7 -0.7 49 120-168 11-66 (92)
113 1wfk_A Zinc finger, FYVE domai 49.6 8.5 0.00029 26.7 2.1 31 124-154 8-42 (88)
114 3zyq_A Hepatocyte growth facto 46.4 7 0.00024 31.8 1.4 30 125-154 164-197 (226)
115 1vfy_A Phosphatidylinositol-3- 46.4 10 0.00035 25.1 2.0 28 126-153 12-43 (73)
116 1dvp_A HRS, hepatocyte growth 45.3 7.8 0.00027 31.3 1.5 30 125-154 161-194 (220)
117 1m3v_A FLIN4, fusion of the LI 42.4 14 0.00048 26.7 2.4 45 126-170 33-80 (122)
118 3a1b_A DNA (cytosine-5)-methyl 42.3 15 0.0005 28.6 2.5 35 124-158 78-114 (159)
119 2ct7_A Ring finger protein 31; 40.7 2.5 8.4E-05 29.2 -2.0 17 139-155 45-61 (86)
120 1x62_A C-terminal LIM domain p 40.4 17 0.00058 23.9 2.4 39 124-170 14-52 (79)
121 1x64_A Alpha-actinin-2 associa 34.2 29 0.00098 23.3 2.8 39 124-170 24-62 (89)
122 1wig_A KIAA1808 protein; LIM d 34.1 28 0.00094 22.5 2.6 37 126-170 6-42 (73)
123 3mpx_A FYVE, rhogef and PH dom 32.9 9.2 0.00031 33.6 0.0 33 124-156 374-410 (434)
124 2cor_A Pinch protein; LIM doma 32.8 38 0.0013 22.2 3.2 38 125-170 15-52 (79)
125 2d8x_A Protein pinch; LIM doma 32.2 23 0.00078 22.5 1.9 38 125-170 5-42 (70)
126 3v43_A Histone acetyltransfera 31.9 49 0.0017 23.5 3.9 30 124-153 4-42 (112)
127 2yt5_A Metal-response element- 31.9 15 0.00051 23.6 0.9 46 123-168 4-61 (66)
128 2dar_A PDZ and LIM domain prot 31.4 25 0.00085 23.7 2.1 39 124-170 24-62 (90)
129 1weu_A Inhibitor of growth fam 30.6 20 0.00069 25.0 1.5 44 124-169 35-86 (91)
130 2l43_A N-teminal domain from h 30.3 25 0.00087 24.2 2.0 47 123-169 23-76 (88)
131 1x6a_A LIMK-2, LIM domain kina 30.1 30 0.001 22.6 2.3 37 126-170 16-52 (81)
132 2lv9_A Histone-lysine N-methyl 29.8 14 0.00049 25.9 0.6 41 126-167 29-75 (98)
133 1wyh_A SLIM 2, skeletal muscle 29.6 40 0.0014 21.3 2.8 37 126-170 6-44 (72)
134 2kgg_A Histone demethylase jar 29.0 27 0.00092 21.3 1.7 40 127-166 4-52 (52)
135 2a20_A Regulating synaptic mem 28.8 5.4 0.00018 25.8 -1.6 33 124-156 8-44 (62)
136 1nyp_A Pinch protein; LIM doma 28.6 25 0.00084 22.0 1.6 37 126-170 6-42 (66)
137 1wen_A Inhibitor of growth fam 28.5 23 0.00078 23.4 1.4 44 124-169 15-66 (71)
138 2vpb_A Hpygo1, pygopus homolog 28.5 26 0.0009 22.7 1.7 29 124-152 7-40 (65)
139 2d8z_A Four and A half LIM dom 28.4 31 0.0011 21.8 2.0 37 126-170 6-42 (70)
140 1x4l_A Skeletal muscle LIM-pro 27.7 42 0.0014 21.3 2.6 38 125-170 5-46 (72)
141 3i2d_A E3 SUMO-protein ligase 27.6 34 0.0012 30.1 2.7 46 125-170 249-299 (371)
142 2xjy_A Rhombotin-2; oncoprotei 27.1 25 0.00086 25.3 1.6 47 124-170 28-77 (131)
143 1wev_A Riken cDNA 1110020M19; 26.9 4.8 0.00017 27.9 -2.3 47 124-170 15-74 (88)
144 4fo9_A E3 SUMO-protein ligase 26.6 37 0.0013 29.8 2.7 46 125-170 215-265 (360)
145 3asl_A E3 ubiquitin-protein li 26.3 12 0.00042 24.7 -0.3 41 127-167 20-68 (70)
146 2cur_A Skeletal muscle LIM-pro 26.3 25 0.00086 22.2 1.3 37 126-170 6-42 (69)
147 2lcq_A Putative toxin VAPC6; P 26.3 20 0.00067 27.4 0.9 29 139-173 134-162 (165)
148 3c5k_A HD6, histone deacetylas 25.7 21 0.00072 25.7 0.9 25 125-149 24-48 (109)
149 3lqh_A Histone-lysine N-methyl 25.6 25 0.00085 27.8 1.3 43 126-168 3-63 (183)
150 3ask_A E3 ubiquitin-protein li 25.3 21 0.00072 29.2 0.9 41 127-167 176-224 (226)
151 2dlo_A Thyroid receptor-intera 24.0 29 0.00099 22.7 1.3 38 125-170 15-52 (81)
152 2kdx_A HYPA, hydrogenase/ureas 23.9 33 0.0011 24.8 1.7 29 139-173 75-104 (119)
153 1rut_X Flinc4, fusion protein 23.9 16 0.00056 28.4 -0.0 45 126-170 33-80 (188)
154 4gne_A Histone-lysine N-methyl 23.8 50 0.0017 23.6 2.6 46 123-170 13-64 (107)
155 1x63_A Skeletal muscle LIM-pro 23.7 44 0.0015 21.8 2.2 37 126-170 16-54 (82)
156 1wew_A DNA-binding family prot 23.5 24 0.00082 23.6 0.8 44 124-168 15-72 (78)
157 2kwj_A Zinc finger protein DPF 23.3 36 0.0012 24.4 1.8 29 126-154 2-40 (114)
158 2e6s_A E3 ubiquitin-protein li 23.2 16 0.00055 24.6 -0.2 40 127-166 28-75 (77)
159 2xqn_T Testin, TESS; metal-bin 22.9 40 0.0014 24.0 2.0 44 125-170 30-74 (126)
160 1v6g_A Actin binding LIM prote 22.7 31 0.0011 22.6 1.2 37 126-170 16-52 (81)
161 1x68_A FHL5 protein; four-and- 22.7 33 0.0011 22.2 1.4 37 126-170 6-46 (76)
162 2rgt_A Fusion of LIM/homeobox 22.0 56 0.0019 24.7 2.8 45 124-170 32-76 (169)
163 2cuq_A Four and A half LIM dom 21.9 44 0.0015 21.6 1.9 37 126-170 16-52 (80)
164 2cu8_A Cysteine-rich protein 2 21.6 45 0.0015 21.4 1.9 38 125-170 9-47 (76)
165 2jtn_A LIM domain-binding prot 21.6 51 0.0017 25.3 2.5 44 125-170 87-130 (182)
166 3mjh_B Early endosome antigen 20.9 25 0.00086 20.0 0.4 11 160-170 6-16 (34)
167 2ri7_A Nucleosome-remodeling f 20.7 35 0.0012 26.0 1.3 44 124-168 7-59 (174)
168 1x4k_A Skeletal muscle LIM-pro 20.5 32 0.0011 21.8 0.9 37 126-170 6-44 (72)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=2.6e-14 Score=98.11 Aligned_cols=49 Identities=33% Similarity=0.818 Sum_probs=44.2
Q ss_pred CCCccceeccccCcCc-------cccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 123 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~-------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
+++.+|+||++.+.++ +.++|||.||..||.+|+..+.+||+||.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4668899999988776 888999999999999999989999999998873
No 2
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=1.4e-13 Score=106.96 Aligned_cols=48 Identities=40% Similarity=0.855 Sum_probs=44.5
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
++..|+||++.+.+++.++|||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 446799999999999999999999999999999999999999998863
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=94.95 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=44.8
Q ss_pred cCCCccceeccccCcCcccc-CCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 122 IEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
.+++..|+||++.+.+++.+ +|||.||..||..|+..+..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 34568899999999998776 999999999999999888999999998874
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.39 E-value=1.4e-13 Score=89.88 Aligned_cols=48 Identities=23% Similarity=0.672 Sum_probs=41.4
Q ss_pred CCCccceeccccCcC---ccccC-CCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSK---IVLPN-CNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~---~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+++.+|+||++.+.+ ++.++ |||.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 356789999998876 55565 9999999999999999999999998764
No 5
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=95.38 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=44.7
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.++..|+||++.+.+++.++|||.||..||..|+.....||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 456789999999999999999999999999999998899999999886
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=93.94 Aligned_cols=51 Identities=27% Similarity=0.697 Sum_probs=43.6
Q ss_pred CCCccceeccccCc---CccccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 123 EREEECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 123 ~~~~~C~IC~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
+.+..|+||++.+. .++.++|||.||..||.+|+..+.+||+||.++....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 45678999998774 4577899999999999999998899999999987543
No 7
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=96.36 Aligned_cols=50 Identities=28% Similarity=0.677 Sum_probs=44.8
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhcc-------CCCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-------SQSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-------~~~CP~CR~~l~ 170 (224)
..+++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34567899999999999999999999999999999976 578999999886
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-13 Score=94.17 Aligned_cols=49 Identities=33% Similarity=0.796 Sum_probs=43.6
Q ss_pred cCCCccceeccccCcCc-------cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 122 IEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~-------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..+...|+||++.+.++ +.++|||.||..||..|+..+.+||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34668899999988765 78899999999999999998999999999875
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=1.9e-13 Score=95.69 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=45.0
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
..++..|+||++.+.+++.++|||.||..||.+|+.. +.+||.||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3567899999999999999999999999999999986 789999999886
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.5e-13 Score=91.52 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=44.0
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhc-cCCCCcccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~ 170 (224)
..++..|+||++.+.+++.++|||.||..||.+|+. ....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 356689999999999999999999999999999994 5679999999886
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=96.00 Aligned_cols=48 Identities=25% Similarity=0.496 Sum_probs=44.5
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+....|+||++.+.+++.++|||.||..||..|+.....||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456789999999999999999999999999999998899999999885
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=4.5e-13 Score=94.65 Aligned_cols=49 Identities=33% Similarity=0.693 Sum_probs=44.4
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhcc------CCCCcccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~l~ 170 (224)
..++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4466899999999999999999999999999999976 679999999886
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.1e-13 Score=93.54 Aligned_cols=49 Identities=37% Similarity=0.976 Sum_probs=44.4
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
..+...|+||++.+.+ +.++|||.||..|+.+|+....+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3456889999999988 888999999999999999999999999999874
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.5e-13 Score=94.19 Aligned_cols=49 Identities=31% Similarity=0.753 Sum_probs=44.6
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhcc------CCCCcccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~l~ 170 (224)
..+...|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4566899999999999999999999999999999876 789999999887
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=9.6e-14 Score=93.17 Aligned_cols=47 Identities=34% Similarity=0.836 Sum_probs=42.3
Q ss_pred CCccceeccccCcCc-------cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~-------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
++.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 357899999988765 78899999999999999998999999999886
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.35 E-value=3.7e-13 Score=91.67 Aligned_cols=49 Identities=33% Similarity=0.842 Sum_probs=43.8
Q ss_pred CCccceeccccCcCc-cccCCCCcccHhhHHHHhccCCCCcccccccccc
Q 027341 124 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
.+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 457899999999885 7889999999999999999889999999988643
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=94.64 Aligned_cols=50 Identities=28% Similarity=0.600 Sum_probs=43.9
Q ss_pred ccCCCccceeccccCcCccccC-CCCcccHhhHHHHhccC--CCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS--QSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~-C~H~Fc~~Ci~~w~~~~--~~CP~CR~~l~ 170 (224)
+..++..|+||++.+.+++.++ |||.||..||..|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456688999999999999999 99999999999999754 69999999754
No 18
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.35 E-value=2.7e-13 Score=88.47 Aligned_cols=47 Identities=26% Similarity=0.619 Sum_probs=41.8
Q ss_pred CCccceeccccCcC----ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.+.+|+||++.+.+ ++.++|||.||..|+.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998755 678899999999999999998899999998874
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.6e-13 Score=91.59 Aligned_cols=49 Identities=33% Similarity=0.776 Sum_probs=43.9
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhc---cCCCCcccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CP~CR~~l~ 170 (224)
.+++..|+||++.+.+++.++|||.||..|+..|+. ....||+||.++.
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 456689999999999999999999999999999996 4568999999886
No 20
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=5.7e-13 Score=93.23 Aligned_cols=50 Identities=32% Similarity=0.632 Sum_probs=43.0
Q ss_pred cCCCccceeccccCcCc---cccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 122 IEREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~---~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
...+.+|+||++.+..+ ..++|+|.||..||.+|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 34568999999988754 556899999999999999988999999998863
No 21
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.1e-13 Score=92.58 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=42.6
Q ss_pred cCCCccceeccccCcCccc---cCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 122 IEREEECGICMETNSKIVL---PNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~---~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
...+..|+||++.+..+.. ++|+|.||..||.+|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3456789999999876533 4899999999999999988999999998864
No 22
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.34 E-value=3.6e-13 Score=97.49 Aligned_cols=48 Identities=29% Similarity=0.606 Sum_probs=42.7
Q ss_pred CCCccceeccccCcC---ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+.+..|+||++.+.. ++.++|||.||..||..|+..+.+||+||.++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 456789999998776 677889999999999999999999999999875
No 23
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-13 Score=94.38 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=42.6
Q ss_pred CCCccceeccccCcCc---cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~---~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+++.+|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4567899999988765 77889999999999999998999999999875
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=93.41 Aligned_cols=50 Identities=32% Similarity=0.761 Sum_probs=44.2
Q ss_pred ccCCCccceeccccCcC----ccccCCCCcccHhhHHHHhccC---CCCcccccccc
Q 027341 121 DIEREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRS---QSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~---~~CP~CR~~l~ 170 (224)
...+..+|+||++.+.+ ++.++|||.||..|+..|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34567899999999988 8889999999999999999765 79999999876
No 25
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=7.1e-13 Score=93.96 Aligned_cols=47 Identities=26% Similarity=0.690 Sum_probs=40.1
Q ss_pred CCccceeccccCcC--------------c-cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSK--------------I-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~--------------~-~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
++..|+||++.+.+ + ++++|+|.||..||.+|+..+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45679999998764 3 44569999999999999999999999999875
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=4.3e-13 Score=98.73 Aligned_cols=47 Identities=36% Similarity=0.888 Sum_probs=43.2
Q ss_pred CCccceeccccCcCccc-cCCCCcccHhhHHHHhccC-CCCcccccccc
Q 027341 124 REEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~-~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~l~ 170 (224)
++..|+||++.+.+++. ++|||.||..||.+|+..+ ..||.||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45789999999999998 9999999999999999877 69999999885
No 27
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=1.4e-12 Score=97.73 Aligned_cols=48 Identities=35% Similarity=0.643 Sum_probs=40.5
Q ss_pred CCccceeccccCcCcc------------------ccCCCCcccHhhHHHHh-----ccCCCCccccccccc
Q 027341 124 REEECGICMETNSKIV------------------LPNCNHAMCLKCYREWR-----IRSQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~------------------~~~C~H~Fc~~Ci~~w~-----~~~~~CP~CR~~l~~ 171 (224)
.+.+|+||++.+..+. .++|+|.||..||..|+ ..+.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999886543 78999999999999999 456799999998864
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=94.81 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=43.8
Q ss_pred ccCCCccceeccccCcCccccC-CCCcccHhhHHHHhcc--CCCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIR--SQSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~-C~H~Fc~~Ci~~w~~~--~~~CP~CR~~l~ 170 (224)
...++..|+||++.+.+++.++ |||.||..||..|+.. ...||.||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456789999999999999999 9999999999999864 369999999873
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=86.33 Aligned_cols=44 Identities=34% Similarity=0.793 Sum_probs=39.6
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhc---cCCCCccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFC 165 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CP~C 165 (224)
.+++..|+||++.+.+++.++|||.||..||.+|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456789999999999999999999999999999997 45689998
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.26 E-value=1.3e-12 Score=97.16 Aligned_cols=49 Identities=20% Similarity=0.505 Sum_probs=44.8
Q ss_pred CCCccceeccccCcCcccc-CCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 123 EREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
.++..|+||++.+.+++.+ +|||.||..||..|+..+..||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4567899999999999887 999999999999999988999999998864
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=83.28 Aligned_cols=44 Identities=32% Similarity=0.911 Sum_probs=38.9
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHh---ccCCCCccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWR---IRSQSCPFC 165 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~---~~~~~CP~C 165 (224)
..++..|+||++.+.+++.++|||.||..||.+|+ ....+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34568899999999999999999999999999995 456899998
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=93.88 Aligned_cols=47 Identities=28% Similarity=0.677 Sum_probs=43.2
Q ss_pred CCccceeccccCcCcccc-CCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
++..|+||++.+.+++.+ +|||.||..||..|+..+.+||.||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 457899999999999777 89999999999999998899999999886
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.24 E-value=2.5e-12 Score=97.95 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=42.5
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccC-CCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~l~ 170 (224)
++..|+||++.+.+++.++|||.||..||..|+... ..||.||.++.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 457899999999999999999999999999999754 59999999886
No 34
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.24 E-value=2.8e-12 Score=91.81 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=46.0
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...+++.|+||++.+.+|+.++|||.||..||.+|+....+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34567899999999999999999999999999999988899999999886
No 35
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.23 E-value=4.1e-12 Score=94.76 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=40.9
Q ss_pred CCccceeccccCcCc------------------cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKI------------------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~------------------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.+..|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 457899999987753 44789999999999999999999999999865
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=2.4e-12 Score=98.07 Aligned_cols=51 Identities=31% Similarity=0.777 Sum_probs=45.2
Q ss_pred CCCccceeccccCcCc-------cccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 123 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~-------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
.++.+|+||++.+.++ +.++|||.||..||.+|+..+.+||+||.++....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3567899999998887 88999999999999999999999999999887433
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1.8e-11 Score=91.06 Aligned_cols=46 Identities=28% Similarity=0.730 Sum_probs=41.7
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhccC---CCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS---QSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CP~CR~~l~ 170 (224)
...|+||++.+.+++.++|||.||..||..|+..+ ..||.||.++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 46799999999999999999999999999999765 48999999886
No 38
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.21 E-value=5.9e-12 Score=92.87 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=46.0
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...+++.|+||++.+.+|+.++|||.||..||..|+....+||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34567899999999999999999999999999999988899999999886
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=4.2e-12 Score=85.83 Aligned_cols=46 Identities=22% Similarity=0.634 Sum_probs=39.2
Q ss_pred Cccceeccc-cCcCc----cccCCCCcccHhhHHHHhc-cCCCCcccccccc
Q 027341 125 EEECGICME-TNSKI----VLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~-~~~~~----~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~ 170 (224)
+..|+||++ .+.++ +.++|||.||..|+.+|+. .+..||.||.++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 467999999 77766 4679999999999999965 4578999999886
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=2.7e-11 Score=85.38 Aligned_cols=50 Identities=30% Similarity=0.668 Sum_probs=40.5
Q ss_pred cCCCccceeccccCc--CccccC--CCCcccHhhHHHHhc-cCCCCccccccccc
Q 027341 122 IEREEECGICMETNS--KIVLPN--CNHAMCLKCYREWRI-RSQSCPFCRDSLKR 171 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~--~~~~~~--C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~~ 171 (224)
.+++..|+||++.+. ++...+ |||.||..|+..++. ....||.||.++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456789999999874 445555 999999999998874 46789999999873
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.19 E-value=1e-11 Score=91.30 Aligned_cols=49 Identities=16% Similarity=0.031 Sum_probs=45.6
Q ss_pred cCCCccceeccccCcCccccCCC-CcccHhhHHHHhccCCCCcccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCN-HAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~-H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..+++.|+||++.+.+|+.++|| |.||..||.+|+....+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 45678999999999999999999 99999999999988889999999886
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=5.5e-12 Score=95.33 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=44.4
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhccCC-CCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~l~ 170 (224)
..+++..|+||++.+.+++.++|||.||..||..|+..+. +||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 3456689999999999999999999999999999997654 9999999886
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.18 E-value=2.3e-12 Score=96.84 Aligned_cols=48 Identities=40% Similarity=0.881 Sum_probs=43.4
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc-CCCCccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~~ 171 (224)
++..|+||++.+.+++.++|||.||..||..|+.. ...||.||.++..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45789999999999999999999999999999976 6799999998863
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=97.93 Aligned_cols=47 Identities=30% Similarity=0.568 Sum_probs=42.9
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccC-CCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~l~ 170 (224)
++..|+||++.+.+++.++|||.||..||..|+... ..||+||.++.
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 457899999999999999999999999999999765 48999999886
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.16 E-value=7.4e-12 Score=84.86 Aligned_cols=49 Identities=24% Similarity=0.676 Sum_probs=43.6
Q ss_pred CCccceeccccCcCcccc--CCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 124 REEECGICMETNSKIVLP--NCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~--~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
++.+|.||++...+++.+ ||||. ||..|+..|...+..||+||.++..+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 456899999999998876 99999 89999999998889999999998643
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=7.6e-12 Score=99.80 Aligned_cols=47 Identities=28% Similarity=0.655 Sum_probs=42.4
Q ss_pred CCccceeccccCcCcccc-CCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLP-NCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
.+..|+||++.+.+++.+ +|||.||..||..|+.. ...||+||.++.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 446899999999999876 99999999999999986 789999999885
No 47
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.12 E-value=1.2e-11 Score=83.50 Aligned_cols=49 Identities=22% Similarity=0.605 Sum_probs=43.1
Q ss_pred CCccceeccccCcCcccc--CCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 124 REEECGICMETNSKIVLP--NCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~--~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
.+..|.||++...+++.+ ||||. ||..|+..|...+..||+||.++..+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 456899999999888776 99998 99999999998888999999998643
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=96.23 Aligned_cols=50 Identities=20% Similarity=0.438 Sum_probs=44.3
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhccC-CCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~l~ 170 (224)
..+++..|+||++.+.+++.++|||.||..||.+|+... .+||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 345678999999999999999999999999999999765 48999999864
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=2.2e-11 Score=91.52 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=43.2
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
++..|+||++.+.+++.++|||.||..||..|+.. ..+||.||.++.
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 45789999999999999999999999999999976 679999999886
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=2.3e-11 Score=80.08 Aligned_cols=45 Identities=22% Similarity=0.520 Sum_probs=39.9
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+++..|+||++.+.+++.++|||.||..|+..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 356789999999999999999999999999774 568999999886
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=1.6e-11 Score=93.51 Aligned_cols=49 Identities=33% Similarity=0.818 Sum_probs=43.7
Q ss_pred CCCccceeccccCcCc-------cccCCCCcccHhhHHHHhccCCCCccccccccc
Q 027341 123 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~-------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
++...|+||++.+.++ +.++|||.||..||.+|+..+.+||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4567899999988765 788999999999999999999999999998863
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=2.9e-11 Score=91.15 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=41.4
Q ss_pred CCccceeccccCcCcccc-CCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
++..|+||++.+.+++.+ +|||.||..||..|+. ..||.||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 457899999999999998 9999999999999987 78999999875
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=8e-11 Score=100.22 Aligned_cols=50 Identities=20% Similarity=0.088 Sum_probs=44.3
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
+......|+||++.+.+|+.++|||.||..||.+|+.. ..+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34567899999999999999999999999999999975 455999999886
No 54
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.07 E-value=1.5e-11 Score=93.24 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=0.9
Q ss_pred CCccceeccccCcCc------------------cccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKI------------------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~------------------~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.+..|+||++.+.++ +.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999987642 33589999999999999999999999999865
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.06 E-value=4.4e-11 Score=107.40 Aligned_cols=48 Identities=35% Similarity=0.928 Sum_probs=44.0
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhc-cCCCCccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~~ 171 (224)
....|+||++.+.+++.++|||.||..|+..|+. ...+||+||.++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3478999999999999999999999999999998 68899999998874
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=2.1e-11 Score=84.84 Aligned_cols=44 Identities=34% Similarity=0.799 Sum_probs=40.0
Q ss_pred CccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++...
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 4679999999999999999999 999999998 7899999998743
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=3.5e-10 Score=91.62 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=45.0
Q ss_pred cccCCCccceeccccCcCccccCCCCcccHhhHHHHhcc-CCCCcccccccc
Q 027341 120 ADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 170 (224)
Q Consensus 120 ~~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~l~ 170 (224)
......+.|+||.+.+.+|+.++|||.||..||..|+.. ..+||+||.++.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 344567899999999999999999999999999999975 357999999886
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-10 Score=84.44 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=41.6
Q ss_pred CCCccceeccccCcCccccC-CCCcccHhhHHHHhccC------CCCcc--cccc-cc
Q 027341 123 EREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS------QSCPF--CRDS-LK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~-C~H~Fc~~Ci~~w~~~~------~~CP~--CR~~-l~ 170 (224)
..++.|+||++.+.+|+.++ |||.||..||..|+..+ .+||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 45688999999999999996 99999999999999653 58999 9866 54
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.96 E-value=1.6e-10 Score=92.40 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=44.4
Q ss_pred ccCCCccceeccccCcCccccCCCCcccHhhHHHHhccC-CCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~l~ 170 (224)
..+++..|+||++.+.+|+.++|||.||..||.+|+..+ .+||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 345678999999999999999999999999999999754 59999999886
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3e-10 Score=80.35 Aligned_cols=48 Identities=21% Similarity=0.644 Sum_probs=39.9
Q ss_pred CCCccceeccccCc--CccccCCC-----CcccHhhHHHHhccC--CCCcccccccc
Q 027341 123 EREEECGICMETNS--KIVLPNCN-----HAMCLKCYREWRIRS--QSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~--~~~~~~C~-----H~Fc~~Ci~~w~~~~--~~CP~CR~~l~ 170 (224)
+++..|.||++.+. ++..+||+ |.||..||.+|+..+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 45678999998764 45678896 999999999999765 59999999885
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4e-10 Score=78.38 Aligned_cols=43 Identities=35% Similarity=0.843 Sum_probs=38.2
Q ss_pred CccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCccccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 171 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~ 171 (224)
+..|+||++.+.+++.+||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3579999999999999999999 99999964 3789999998864
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.1e-10 Score=77.17 Aligned_cols=47 Identities=30% Similarity=0.747 Sum_probs=40.8
Q ss_pred cCCCccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
.+++..|.||++...+++++||||. ||..|+.. ...||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3456789999999999999999999 99999984 47899999998743
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=76.16 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=40.9
Q ss_pred CCCccceeccccCcCc-cccCCCCcccHhhHHHHhccC--CCCccccccccc
Q 027341 123 EREEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLKR 171 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~l~~ 171 (224)
+...+|+||.+.+... ....|+|.||..||.+|+..+ .+||+||.++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3457899999987753 344899999999999999876 899999988764
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.86 E-value=3e-10 Score=80.06 Aligned_cols=44 Identities=32% Similarity=0.759 Sum_probs=39.3
Q ss_pred CccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
+..|.||++...+++.+||||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3579999999999999999999 999999877 3899999998754
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.67 E-value=3e-09 Score=94.44 Aligned_cols=45 Identities=31% Similarity=0.888 Sum_probs=40.9
Q ss_pred CCccceeccccCcCccccCCCCc-ccHhhHHHHhccCCCCcccccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 172 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~l~~~ 172 (224)
++..|+||++.+.+++.+||||. ||..|+..| ..||+||.++...
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 45789999999999999999999 999999988 6899999998753
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.67 E-value=6.2e-09 Score=88.63 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=41.9
Q ss_pred CCCccceeccccCcCccc-cCCCCcccHhhHHHHhccC--CCCcc--cccccc
Q 027341 123 EREEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRS--QSCPF--CRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~-~~C~H~Fc~~Ci~~w~~~~--~~CP~--CR~~l~ 170 (224)
..+..|+||++.+.+|+. +.|||.||..||..|+..+ .+||. ||..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 355789999999999997 4999999999999998753 57999 999775
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.61 E-value=8.4e-09 Score=69.10 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=42.3
Q ss_pred ccceeccccCcCcccc-CCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+.|+||.+.+.+|+.. +|||.|++.||.+|+..+.+||+++.++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 6799999999999998 99999999999999988888999999886
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.53 E-value=1.7e-08 Score=88.94 Aligned_cols=48 Identities=27% Similarity=0.600 Sum_probs=38.2
Q ss_pred CCCccceeccccCcC-c-------cccCCCCcccHhhHHHHhccC-----------CCCcccccccc
Q 027341 123 EREEECGICMETNSK-I-------VLPNCNHAMCLKCYREWRIRS-----------QSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~-~-------~~~~C~H~Fc~~Ci~~w~~~~-----------~~CP~CR~~l~ 170 (224)
+...+|+||++.+.+ . ..++|+|.||..|+.+|+... .+||+||++++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 355789999987665 2 124799999999999999642 47999999886
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=2.6e-08 Score=71.98 Aligned_cols=45 Identities=20% Similarity=0.610 Sum_probs=36.5
Q ss_pred CCccceeccccCcCccc---cCCCCcccHhhHHHHhcc--------CCCCcc--cccc
Q 027341 124 REEECGICMETNSKIVL---PNCNHAMCLKCYREWRIR--------SQSCPF--CRDS 168 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~---~~C~H~Fc~~Ci~~w~~~--------~~~CP~--CR~~ 168 (224)
+..+|+||++.+..+.. .+|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999999887644 379999999999988753 247999 9987
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=1e-07 Score=63.56 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=38.8
Q ss_pred CCCccceeccccCcCccccCCC--C---cccHhhHHHHhcc--CCCCcccccccc
Q 027341 123 EREEECGICMETNSKIVLPNCN--H---AMCLKCYREWRIR--SQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~--H---~Fc~~Ci~~w~~~--~~~CP~CR~~l~ 170 (224)
++...|.||++...++...||. | .||..|+.+|+.. +.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999876666677865 4 7999999999964 679999998774
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.34 E-value=1.9e-07 Score=68.03 Aligned_cols=47 Identities=23% Similarity=0.531 Sum_probs=38.9
Q ss_pred cceeccccCcC-ccccCCCCcccHhhHHHHhc-cCCCCccccccccccc
Q 027341 127 ECGICMETNSK-IVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLKRVN 173 (224)
Q Consensus 127 ~C~IC~~~~~~-~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~l~~~~ 173 (224)
-|.+|--.+.. +...||+|.||.+|+..|.+ +.++||.|+.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 47788766554 67889999999999999985 5689999999998665
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.67 E-value=3e-05 Score=65.30 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=39.2
Q ss_pred CCccceeccccCcCc-cccCCCCcccHhhHHHHhccC--CCCccccccccc
Q 027341 124 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLKR 171 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~-~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~l~~ 171 (224)
.-..|.||.+..... ...+|+|.||..|+..|+..+ ..||.|+.++..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 357899999987754 456699999999999998654 599999987753
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.90 E-value=0.0038 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.512 Sum_probs=26.5
Q ss_pred Cccceecccc-CcCccc--cCCCCcccHhhHHHHh
Q 027341 125 EEECGICMET-NSKIVL--PNCNHAMCLKCYREWR 156 (224)
Q Consensus 125 ~~~C~IC~~~-~~~~~~--~~C~H~Fc~~Ci~~w~ 156 (224)
+..|.||.+. +.+++. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4679999975 667766 8999999999999843
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.56 E-value=0.033 Score=39.81 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=36.8
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
.-..|..|+-....-+. -..|-.|..|+...+..+..||+|..++-
T Consensus 27 G~~nCKsCWf~~k~LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLVE-CNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSSEEE-CSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccCCeee-ecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 44679999876653332 24788999999999999999999999884
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.36 E-value=0.072 Score=52.68 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=45.4
Q ss_pred ccCCCccceeccccCcCccccCCC-CcccHhhHHHHhccCCCCcccccccc
Q 027341 121 DIEREEECGICMETNSKIVLPNCN-HAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 121 ~~~~~~~C~IC~~~~~~~~~~~C~-H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+..+++.|+|-.+.+.+|+.++-| +.+=+.+|.+|+..+.+||+=|.+++
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 445678999999999999999998 58999999999998999999999887
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.01 E-value=0.32 Score=32.34 Aligned_cols=46 Identities=17% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccC----CCCccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CP~CR~~l 169 (224)
....|.||.+.-.-...-.|...||..|+.+.+... =.||.|+...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 446799998754433444688999999998777543 3799997543
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.34 E-value=2.4 Score=29.82 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=37.3
Q ss_pred CCccceeccccCc-------CccccCCCCcccHhhHHH-HhccCCCCccccccccccc
Q 027341 124 REEECGICMETNS-------KIVLPNCNHAMCLKCYRE-WRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 124 ~~~~C~IC~~~~~-------~~~~~~C~H~Fc~~Ci~~-w~~~~~~CP~CR~~l~~~~ 173 (224)
....|.||-+..- ....-.|+--.|..|++- ..+.++.||.|+....+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~k 72 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccccc
Confidence 3468999988633 134456888899999964 4466899999999987643
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.89 E-value=0.65 Score=37.54 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=32.5
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~l 169 (224)
.+..|.+|.+...-...-.|...||..|+.+-+.. .=.||.|+..-
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999865443344468889999999775543 24799998643
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.18 E-value=1.5 Score=34.62 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=32.4
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~l 169 (224)
.+..|.+|.+...-...-.|.-.||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999866443344468889999998765543 24699998644
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.03 E-value=1.2 Score=30.90 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=28.0
Q ss_pred CCCccceeccccCcCccccCC----CCcccHhhHHHHhcc
Q 027341 123 EREEECGICMETNSKIVLPNC----NHAMCLKCYREWRIR 158 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C----~H~Fc~~Ci~~w~~~ 158 (224)
.....|.+|.+..++.-...| .|.||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345789999999888644445 789999999888754
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.40 E-value=1.1 Score=28.96 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=31.1
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 167 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~ 167 (224)
...+..|.+|.+...-...-.|...||..|+.+-+.. .=.||.|+.
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456789999875332333467888999999874432 347998864
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.41 E-value=0.4 Score=30.55 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=29.1
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 167 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~ 167 (224)
..+..|.+|.+.-.-...-.|...||..|+.+-+.. .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999875433334468888999998754332 124777743
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.38 E-value=3.3 Score=28.87 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=23.0
Q ss_pred cCCCccceeccccCcC---ccccCCCCcccHhhHHHH
Q 027341 122 IEREEECGICMETNSK---IVLPNCNHAMCLKCYREW 155 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w 155 (224)
...+..|.||-..-.. +-. -|+-.||..|+++-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccc-cccccccHhhcccc
Confidence 3467889999743222 222 38899999999986
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.17 E-value=0.87 Score=29.51 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=30.6
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCcccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 168 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 168 (224)
..+..|.+|.+.-.-...-.|...||..|+.+-+.. .=.||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345679999874433333468888999999754432 2369999754
No 85
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=74.77 E-value=9.7 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=22.7
Q ss_pred CccceeccccCcCc----cccCCCCcccHhhHHH
Q 027341 125 EEECGICMETNSKI----VLPNCNHAMCLKCYRE 154 (224)
Q Consensus 125 ~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~~ 154 (224)
...|.+|...|.-. -.-.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45799999877642 4457999999999643
No 86
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.35 E-value=2.7 Score=27.26 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=29.8
Q ss_pred ccceeccccCcCc---cccCCCCcccHhhHHHHhccCCCCccc
Q 027341 126 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFC 165 (224)
Q Consensus 126 ~~C~IC~~~~~~~---~~~~C~H~Fc~~Ci~~w~~~~~~CP~C 165 (224)
..|-.|...+.+. ....|++.||.+|=.=..+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4588888877543 367899999999964444555789988
No 87
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.46 E-value=1 Score=29.26 Aligned_cols=34 Identities=32% Similarity=0.745 Sum_probs=22.9
Q ss_pred CccceeccccCcC------ccccC--CCCcccHhhHHHHhcc
Q 027341 125 EEECGICMETNSK------IVLPN--CNHAMCLKCYREWRIR 158 (224)
Q Consensus 125 ~~~C~IC~~~~~~------~~~~~--C~H~Fc~~Ci~~w~~~ 158 (224)
...|+-|...++. ..... |+|.||..|..+|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3568888765553 23333 8888999888888654
No 88
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.81 E-value=6 Score=31.37 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=30.8
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCcccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 168 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 168 (224)
+..|.+|.+...-...-.|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3569999876544444567788999999764432 2479999865
No 89
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=67.12 E-value=0.62 Score=31.96 Aligned_cols=20 Identities=25% Similarity=0.826 Sum_probs=16.8
Q ss_pred CCCCcccHhhHHHHhccCCCCc
Q 027341 142 NCNHAMCLKCYREWRIRSQSCP 163 (224)
Q Consensus 142 ~C~H~Fc~~Ci~~w~~~~~~CP 163 (224)
.|+|.||..|-..|.. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999999876 5664
No 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=66.70 E-value=3.6 Score=31.77 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=36.5
Q ss_pred CCccceeccccCc-----CccccCCCCcccHhhHHHHhcc--CCCCcccccccccccCCCccccc
Q 027341 124 REEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLKRVNSGDLWVYM 181 (224)
Q Consensus 124 ~~~~C~IC~~~~~-----~~~~~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~l~~~~~~~~~~~~ 181 (224)
.+..|.+|...+. ......|.|.+|..|-. |... .-.|-+|+..-.-......|.+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~rel~~kSGeWf~~ 130 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLARVVKIGSLEWYYQ 130 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHHHHHHHHHCHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHHHHHHHhccHHHHH
Confidence 5678999998753 34667899999999972 3322 23577787653323344455553
No 91
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=66.68 E-value=5.8 Score=29.87 Aligned_cols=62 Identities=19% Similarity=0.454 Sum_probs=39.5
Q ss_pred CCCccceeccccCc-----CccccCCCCcccHhhHHHHhcc----CCCCcccccccccccCCCcccccCCc
Q 027341 123 EREEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSLKRVNSGDLWVYMDSR 184 (224)
Q Consensus 123 ~~~~~C~IC~~~~~-----~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~l~~~~~~~~~~~~~~~ 184 (224)
..+..|.+|...+. ......|.|.+|..|-..-... .-.|-+|+..-.-.....-|.+...+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~~~ 123 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFP 123 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSCC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhcCc
Confidence 45678999998773 2366789999999996432111 12588887654433455566665443
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=63.52 E-value=1.5 Score=28.83 Aligned_cols=44 Identities=25% Similarity=0.564 Sum_probs=29.7
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 167 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~ 167 (224)
.+..|.||.+.-.-...-.|.-.||..|+.+-+.. .-.||.|..
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 56789999875433333467888999999754332 236888865
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=63.32 E-value=12 Score=28.02 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=30.8
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhc-----------cCCCCccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRI-----------RSQSCPFCRD 167 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~-----------~~~~CP~CR~ 167 (224)
..+..|.+|-+--.-.-.-.|-..||..|+.+-+. ..=.|+.|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35567999987644333346889999999987421 1247999964
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=63.02 E-value=7 Score=29.80 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=32.5
Q ss_pred CCCccceeccccCcCccccCCCCcccHhhHHHHhc-----------cCCCCccccc
Q 027341 123 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRI-----------RSQSCPFCRD 167 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~-----------~~~~CP~CR~ 167 (224)
..+..|.+|.+--.-...-.|-..||..|+.+-+. ..=.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45678999998655444446888999999986553 1246999963
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=60.97 E-value=1.6 Score=27.99 Aligned_cols=46 Identities=22% Similarity=0.578 Sum_probs=30.4
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~l 169 (224)
.+..|.+|.....-...-.|...||..|+.+-+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999875433334468888999999754332 23588886544
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.28 E-value=2.8 Score=30.13 Aligned_cols=44 Identities=16% Similarity=0.431 Sum_probs=29.7
Q ss_pred CCCccceeccccCcC---ccccCCCCcccHhhHHHHhcc----CCCCcccc
Q 027341 123 EREEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR----SQSCPFCR 166 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR 166 (224)
.++..|.||.+.-.. .....|+..||..|+...... .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 356789999876543 344578999999999776542 23455553
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.00 E-value=3.9 Score=28.64 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=31.7
Q ss_pred cCCCccceeccccCcCccccCCCCcccHhhHHHHhcc----CCCCcccccc
Q 027341 122 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 168 (224)
Q Consensus 122 ~~~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 168 (224)
...+..|.+|.+.-.-...-.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999976433333467778999999765543 2369999753
No 98
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.10 E-value=4 Score=27.01 Aligned_cols=33 Identities=27% Similarity=0.653 Sum_probs=24.9
Q ss_pred CCCccceeccccCcCccccCC-CCcccHhhHHHHh
Q 027341 123 EREEECGICMETNSKIVLPNC-NHAMCLKCYREWR 156 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~~C-~H~Fc~~Ci~~w~ 156 (224)
++..-|.||.+. .......| +-.||..|..+-.
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 344679999998 33556678 7789999987754
No 99
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.35 E-value=3.2 Score=30.07 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=17.8
Q ss_pred ccccCCCCcccHhhHHHHhccCCCCccccccc
Q 027341 138 IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 169 (224)
Q Consensus 138 ~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l 169 (224)
+....||+.|+ .-+.....||.|+..-
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 34457999992 1223457899998754
No 100
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.04 E-value=5.9 Score=24.20 Aligned_cols=41 Identities=29% Similarity=0.702 Sum_probs=25.2
Q ss_pred cceeccccCcC---ccccCCCCcccHhhHHHHhcc----CCCCccccc
Q 027341 127 ECGICMETNSK---IVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 167 (224)
Q Consensus 127 ~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~ 167 (224)
.|.||...... ...-.|...||..|+.+=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 37778754322 222367888999999753332 235888864
No 101
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=54.03 E-value=3.3 Score=27.60 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCccceeccccCcCc---cccCCCCcccHhhHHHHhcc----CCCCcccccccc
Q 027341 124 REEECGICMETNSKI---VLPNCNHAMCLKCYREWRIR----SQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~---~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~l~ 170 (224)
+...|.+|....... ..-.|.-.||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699998754332 22357888999999654332 347999987654
No 102
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.72 E-value=4.6 Score=28.89 Aligned_cols=12 Identities=25% Similarity=1.054 Sum_probs=10.7
Q ss_pred cccHhhHHHHhc
Q 027341 146 AMCLKCYREWRI 157 (224)
Q Consensus 146 ~Fc~~Ci~~w~~ 157 (224)
.||..|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 103
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.66 E-value=4.6 Score=28.93 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=10.6
Q ss_pred cccHhhHHHHhc
Q 027341 146 AMCLKCYREWRI 157 (224)
Q Consensus 146 ~Fc~~Ci~~w~~ 157 (224)
.||..|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 104
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=53.37 E-value=7.3 Score=26.65 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=23.3
Q ss_pred CCccceeccccCcCc----cccCCCCcccHhhHHH
Q 027341 124 REEECGICMETNSKI----VLPNCNHAMCLKCYRE 154 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~~ 154 (224)
+...|.+|...|.-. -...||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 446799999887642 3457999999999754
No 105
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=52.94 E-value=1.3 Score=38.20 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=34.5
Q ss_pred CCCccceeccccCcCcccc----CCC--CcccHhhHHHHhccCCCCcccccc
Q 027341 123 EREEECGICMETNSKIVLP----NCN--HAMCLKCYREWRIRSQSCPFCRDS 168 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~----~C~--H~Fc~~Ci~~w~~~~~~CP~CR~~ 168 (224)
+....|++|-....-.++. .=| |..|..|-..|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567899998765443322 234 568999999999999999999875
No 106
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.38 E-value=7 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=23.1
Q ss_pred CCccceeccccCcCc----cccCCCCcccHhhHHH
Q 027341 124 REEECGICMETNSKI----VLPNCNHAMCLKCYRE 154 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~~ 154 (224)
+...|.+|...|.-. -...||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345799999877642 3457999999999754
No 107
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=52.12 E-value=1.8 Score=32.14 Aligned_cols=45 Identities=18% Similarity=0.499 Sum_probs=28.8
Q ss_pred CCccceeccccCcCc----cccCCCCcccHhhHHHHhccCCCCcccccc
Q 027341 124 REEECGICMETNSKI----VLPNCNHAMCLKCYREWRIRSQSCPFCRDS 168 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~ 168 (224)
....|..|...|... -...||..||..|..........|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 345799998877642 445799999999975544445567777543
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.04 E-value=7.8 Score=26.44 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCccceeccccCcCc----cccCCCCcccHhhHH
Q 027341 124 REEECGICMETNSKI----VLPNCNHAMCLKCYR 153 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~ 153 (224)
+...|.+|...|.-. -...||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 346799999887642 335799999999953
No 109
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=51.71 E-value=18 Score=32.13 Aligned_cols=44 Identities=18% Similarity=0.560 Sum_probs=31.0
Q ss_pred CCccceeccccCcCcccc--CCCCcccHhhHHHHhccC----------CCCccccc
Q 027341 124 REEECGICMETNSKIVLP--NCNHAMCLKCYREWRIRS----------QSCPFCRD 167 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~--~C~H~Fc~~Ci~~w~~~~----------~~CP~CR~ 167 (224)
.+..|.+|-+-..-...- .|...||..||...+... =.|=+|.-
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 456788888755433333 799999999999988542 26777753
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.61 E-value=7.3 Score=27.06 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=23.2
Q ss_pred CccceeccccCcC----ccccCCCCcccHhhHHHH
Q 027341 125 EEECGICMETNSK----IVLPNCNHAMCLKCYREW 155 (224)
Q Consensus 125 ~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w 155 (224)
...|.+|...|.- -....||+.||..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4579999887763 244579999999997543
No 111
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.43 E-value=3.5 Score=26.54 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=29.4
Q ss_pred CCCccceeccccCcC-c---cccCCCCcccHhhHHHHhc-----cCCCCcccccc
Q 027341 123 EREEECGICMETNSK-I---VLPNCNHAMCLKCYREWRI-----RSQSCPFCRDS 168 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~-~---~~~~C~H~Fc~~Ci~~w~~-----~~~~CP~CR~~ 168 (224)
++...|++|.....+ . ..-.|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999876532 1 2225888899999843221 34679999753
No 112
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.20 E-value=2.5 Score=29.68 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=31.4
Q ss_pred cccCCCccceeccccCcC---ccccCCCCcccHhhHHHHhcc----CCCCcccccc
Q 027341 120 ADIEREEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 168 (224)
Q Consensus 120 ~~~~~~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 168 (224)
.+..++..|.||...-.. ...-.|...||..|+.+=+.. .=.||.|+..
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 344456789999875432 222357888999998743332 2359999764
No 113
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.61 E-value=8.5 Score=26.65 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCccceeccccCcCc----cccCCCCcccHhhHHH
Q 027341 124 REEECGICMETNSKI----VLPNCNHAMCLKCYRE 154 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~~ 154 (224)
+...|.+|...|.-. -...||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 446799999877642 3457999999999754
No 114
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.44 E-value=7 Score=31.83 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=23.0
Q ss_pred CccceeccccCcC----ccccCCCCcccHhhHHH
Q 027341 125 EEECGICMETNSK----IVLPNCNHAMCLKCYRE 154 (224)
Q Consensus 125 ~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~ 154 (224)
...|.+|...|.- --...||+.||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4689999887763 24457999999999754
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=46.38 E-value=10 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=21.4
Q ss_pred ccceeccccCcCc----cccCCCCcccHhhHH
Q 027341 126 EECGICMETNSKI----VLPNCNHAMCLKCYR 153 (224)
Q Consensus 126 ~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~ 153 (224)
..|.+|...|.-. -...||+.||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 5799999877642 335799999999964
No 116
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.30 E-value=7.8 Score=31.28 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=22.6
Q ss_pred CccceeccccCcCc----cccCCCCcccHhhHHH
Q 027341 125 EEECGICMETNSKI----VLPNCNHAMCLKCYRE 154 (224)
Q Consensus 125 ~~~C~IC~~~~~~~----~~~~C~H~Fc~~Ci~~ 154 (224)
...|.+|...|.-. -...||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46899998877632 4457999999999643
No 117
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.39 E-value=14 Score=26.67 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=33.7
Q ss_pred ccceeccccCc---CccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+.|..|-..+. ......=|..+|..|..+.......|-.|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 67888887775 2344456778999999886655558999999886
No 118
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=42.29 E-value=15 Score=28.57 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCccceeccccCcCccc--cCCCCcccHhhHHHHhcc
Q 027341 124 REEECGICMETNSKIVL--PNCNHAMCLKCYREWRIR 158 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~--~~C~H~Fc~~Ci~~w~~~ 158 (224)
.+..|.||-+-..-... .+|...||..||...+..
T Consensus 78 ~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 45678888875432222 368899999999998865
No 119
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.73 E-value=2.5 Score=29.19 Aligned_cols=17 Identities=35% Similarity=1.349 Sum_probs=14.5
Q ss_pred cccCCCCcccHhhHHHH
Q 027341 139 VLPNCNHAMCLKCYREW 155 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w 155 (224)
..+.|++.||..|-.+|
T Consensus 45 ~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECTTTCCEECSSSCSBC
T ss_pred EeCCCCCccccccCCch
Confidence 44469999999999999
No 120
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.39 E-value=17 Score=23.89 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=29.9
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
....|+-|-+.+...++..-+..||..|. .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 45689999987776555557788888884 7999988875
No 121
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.22 E-value=29 Score=23.31 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
....|.-|-+.+...++..-+..||..| ..|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 4467999998777655555777888888 47889988885
No 122
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.10 E-value=28 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=26.5
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+-|-..+...++..-+..||..| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 46888887766655555677778777 36888887775
No 123
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.86 E-value=9.2 Score=33.64 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCccceeccccCcC----ccccCCCCcccHhhHHHHh
Q 027341 124 REEECGICMETNSK----IVLPNCNHAMCLKCYREWR 156 (224)
Q Consensus 124 ~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~ 156 (224)
....|.+|...|.- -....||+.||..|-....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 34679999887663 2456799999999986543
No 124
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.83 E-value=38 Score=22.18 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=28.7
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...|+-|-..+....+..-+..||..| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 467999988777655555677788777 47999998886
No 125
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.19 E-value=23 Score=22.48 Aligned_cols=38 Identities=24% Similarity=0.559 Sum_probs=26.9
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...|+.|-+.+...++..-+..||..|. .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTS--------BCSSSCCBCS
T ss_pred CCcCccCCCEecceEEEECcccccccCC--------EeCCCCCcCC
Confidence 3568888887665555555667777773 7888888776
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=31.94 E-value=49 Score=23.54 Aligned_cols=30 Identities=23% Similarity=0.575 Sum_probs=20.6
Q ss_pred CCccceeccccCc-----C----ccccCCCCcccHhhHH
Q 027341 124 REEECGICMETNS-----K----IVLPNCNHAMCLKCYR 153 (224)
Q Consensus 124 ~~~~C~IC~~~~~-----~----~~~~~C~H~Fc~~Ci~ 153 (224)
....|.+|..... + .....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4467999986421 1 2334699999999994
No 127
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.92 E-value=15 Score=23.55 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=29.5
Q ss_pred CCCccceeccccCc---C--ccccCCCCcccHhhHHHHhc-------cCCCCcccccc
Q 027341 123 EREEECGICMETNS---K--IVLPNCNHAMCLKCYREWRI-------RSQSCPFCRDS 168 (224)
Q Consensus 123 ~~~~~C~IC~~~~~---~--~~~~~C~H~Fc~~Ci~~w~~-------~~~~CP~CR~~ 168 (224)
..+..|.||..... . ...-.|.-.||..|+.+-+. ..=.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 35678999987532 1 23346788899999875321 23468888653
No 128
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.39 E-value=25 Score=23.69 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
....|+.|-+.+....+..-+..||..| ..|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 3467999988776655555677788877 47999998886
No 129
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.63 E-value=20 Score=25.05 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=25.8
Q ss_pred CCccceeccccCcCcccc---C--CC-CcccHhhHHHHh--ccCCCCccccccc
Q 027341 124 REEECGICMETNSKIVLP---N--CN-HAMCLKCYREWR--IRSQSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~---~--C~-H~Fc~~Ci~~w~--~~~~~CP~CR~~l 169 (224)
+...| ||...... ..+ . |. ..||..|+.--. ...-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 34556 99875432 222 3 54 579999985111 1235799997643
No 130
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=30.28 E-value=25 Score=24.16 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=30.2
Q ss_pred CCCccceeccccC--cC---ccccCCCCcccHhhHHHHh--ccCCCCccccccc
Q 027341 123 EREEECGICMETN--SK---IVLPNCNHAMCLKCYREWR--IRSQSCPFCRDSL 169 (224)
Q Consensus 123 ~~~~~C~IC~~~~--~~---~~~~~C~H~Fc~~Ci~~w~--~~~~~CP~CR~~l 169 (224)
+++..|.||.+.. .. ...-.|.-.||..|+..-. ...=.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4567899998754 11 2333677789999996532 1234688886543
No 131
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.11 E-value=30 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=27.4
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-+.+....+..-+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 46888988777655555677788777 47888988875
No 132
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.75 E-value=14 Score=25.95 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=25.4
Q ss_pred ccceeccccCcCcc---ccCCCCcccHhhHHHHhcc---CCCCccccc
Q 027341 126 EECGICMETNSKIV---LPNCNHAMCLKCYREWRIR---SQSCPFCRD 167 (224)
Q Consensus 126 ~~C~IC~~~~~~~~---~~~C~H~Fc~~Ci~~w~~~---~~~CP~CR~ 167 (224)
..| ||-....... .-.|.-.||..|+..=... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 556 7866544332 2357788999998542221 347999963
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.62 E-value=40 Score=21.31 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=27.0
Q ss_pred ccceeccccCc--CccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-..+. +.++..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 57899988776 345555677788877 47888888775
No 134
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=29.00 E-value=27 Score=21.33 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=22.6
Q ss_pred cceeccccCcCc----ccc-CCCCcccHhhHHH----HhccCCCCcccc
Q 027341 127 ECGICMETNSKI----VLP-NCNHAMCLKCYRE----WRIRSQSCPFCR 166 (224)
Q Consensus 127 ~C~IC~~~~~~~----~~~-~C~H~Fc~~Ci~~----w~~~~~~CP~CR 166 (224)
.|.+|.....+. ..- .|...||..|+.- -....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 366777655422 111 4777899999731 112456788874
No 135
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=28.76 E-value=5.4 Score=25.84 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=20.1
Q ss_pred CCccceeccc-cCcCc---cccCCCCcccHhhHHHHh
Q 027341 124 REEECGICME-TNSKI---VLPNCNHAMCLKCYREWR 156 (224)
Q Consensus 124 ~~~~C~IC~~-~~~~~---~~~~C~H~Fc~~Ci~~w~ 156 (224)
+...|.||.. .|.+. ...-|.-.||..|--.|.
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEE
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEee
Confidence 4578999986 35553 233355566766655554
No 136
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.65 E-value=25 Score=22.03 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=26.6
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-+.+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 56888887666555555677777777 47888988775
No 137
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=28.49 E-value=23 Score=23.41 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=26.0
Q ss_pred CCccceeccccCcCcccc---C--CC-CcccHhhHHHHh--ccCCCCccccccc
Q 027341 124 REEECGICMETNSKIVLP---N--CN-HAMCLKCYREWR--IRSQSCPFCRDSL 169 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~---~--C~-H~Fc~~Ci~~w~--~~~~~CP~CR~~l 169 (224)
+...| ||...... ..+ . |. ..||..|+.--. ...-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 44567 89875432 222 3 55 589999996111 1234799997643
No 138
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.46 E-value=26 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=19.5
Q ss_pred CCccceeccccCcCc----ccc-CCCCcccHhhH
Q 027341 124 REEECGICMETNSKI----VLP-NCNHAMCLKCY 152 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~----~~~-~C~H~Fc~~Ci 152 (224)
....|++|.....+. ..- .|.-.||..|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 456799999865432 112 67888999998
No 139
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.36 E-value=31 Score=21.78 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=25.5
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-+.+....+..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 46888887666544444667777777 36888888774
No 140
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.74 E-value=42 Score=21.30 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=26.7
Q ss_pred CccceeccccCcC----ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...|+-|-+.+.. .++..-+..||..|. .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 3568888887663 444446777888773 7888888775
No 141
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=27.64 E-value=34 Score=30.15 Aligned_cols=46 Identities=20% Similarity=0.495 Sum_probs=30.8
Q ss_pred CccceeccccCcCcc-ccCCCCcccHhh--HHHHhc--cCCCCcccccccc
Q 027341 125 EEECGICMETNSKIV-LPNCNHAMCLKC--YREWRI--RSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~-~~~C~H~Fc~~C--i~~w~~--~~~~CP~CR~~l~ 170 (224)
...|++-...+..|+ -..|.|.-|.+- +..... ..-.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 367998888877764 457999855543 333332 2458999998764
No 142
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.10 E-value=25 Score=25.28 Aligned_cols=47 Identities=13% Similarity=0.301 Sum_probs=33.2
Q ss_pred CCccceeccccCcC---ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+-+.|..|-..+.. .....=|..+|..|..+-......|..|..+|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 34778888777642 334446778999999876544448999998885
No 143
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.88 E-value=4.8 Score=27.90 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCccceeccccCc---Cc--cccCCCCcccHhhHHHHhc--------cCCCCcccccccc
Q 027341 124 REEECGICMETNS---KI--VLPNCNHAMCLKCYREWRI--------RSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~---~~--~~~~C~H~Fc~~Ci~~w~~--------~~~~CP~CR~~l~ 170 (224)
.+..|.+|...-. .. ..-.|...||..|+.+-+. ..=.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4567999987532 22 2336788899999976443 2347999976554
No 144
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=26.56 E-value=37 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=30.8
Q ss_pred CccceeccccCcCcc-ccCCCCcccHh--hHHHHhcc--CCCCcccccccc
Q 027341 125 EEECGICMETNSKIV-LPNCNHAMCLK--CYREWRIR--SQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~-~~~C~H~Fc~~--Ci~~w~~~--~~~CP~CR~~l~ 170 (224)
...|++-...+..|+ -..|.|.-|.+ -+.....+ .-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 367998888777764 45799985543 33333322 358999998764
No 145
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.34 E-value=12 Score=24.66 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=24.2
Q ss_pred cceeccccCcCcccc---CCCCcccHhhHHHHhcc-----CCCCccccc
Q 027341 127 ECGICMETNSKIVLP---NCNHAMCLKCYREWRIR-----SQSCPFCRD 167 (224)
Q Consensus 127 ~C~IC~~~~~~~~~~---~C~H~Fc~~Ci~~w~~~-----~~~CP~CR~ 167 (224)
.|.+|........++ .|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566777543332222 57788999999753322 235777753
No 146
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.33 E-value=25 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=25.2
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+-|-+.+....+..-+..||..|. .|..|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCcC--------EECCCCCCCC
Confidence 568888876655444445666777773 6888888775
No 147
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.26 E-value=20 Score=27.35 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=18.5
Q ss_pred cccCCCCcccHhhHHHHhccCCCCccccccccccc
Q 027341 139 VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 173 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~~~~ 173 (224)
....|||.|=.. .....||.|-.++.++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEECC
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcceeCC
Confidence 445688877321 22347999998876543
No 148
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.74 E-value=21 Score=25.72 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.7
Q ss_pred CccceeccccCcCccccCCCCcccH
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCL 149 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~ 149 (224)
...|..|......-+.+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4569999987777788899999984
No 149
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=25.60 E-value=25 Score=27.77 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=27.6
Q ss_pred ccceeccccCcCc-------cccCCCCcccHhhHHH------Hhc-----cCCCCcccccc
Q 027341 126 EECGICMETNSKI-------VLPNCNHAMCLKCYRE------WRI-----RSQSCPFCRDS 168 (224)
Q Consensus 126 ~~C~IC~~~~~~~-------~~~~C~H~Fc~~Ci~~------w~~-----~~~~CP~CR~~ 168 (224)
..|+||.....+. -.-.|...||..|..- -+. ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4599998654322 2235888999999832 111 14689999864
No 150
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=25.28 E-value=21 Score=29.25 Aligned_cols=41 Identities=22% Similarity=0.517 Sum_probs=23.3
Q ss_pred cceeccccCcCc---cccCCCCcccHhhHHHHhcc-----CCCCccccc
Q 027341 127 ECGICMETNSKI---VLPNCNHAMCLKCYREWRIR-----SQSCPFCRD 167 (224)
Q Consensus 127 ~C~IC~~~~~~~---~~~~C~H~Fc~~Ci~~w~~~-----~~~CP~CR~ 167 (224)
.|.+|....... ..-.|...||..|+.+=+.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887643222 23367888999999854432 235888864
No 151
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.00 E-value=29 Score=22.72 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=26.5
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...|+-|-..+.+.++..-+..||..| .+|..|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 356888887666555545666777777 47888988775
No 152
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.94 E-value=33 Score=24.75 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=18.7
Q ss_pred cccCCCCcccHhhHHHHhccCC-CCccccccccccc
Q 027341 139 VLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLKRVN 173 (224)
Q Consensus 139 ~~~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~l~~~~ 173 (224)
...+|||.|-. ..... .||.|..+...+.
T Consensus 75 ~C~~CG~~~e~------~~~~~~~CP~Cgs~~~~i~ 104 (119)
T 2kdx_A 75 ECKDCSHVFKP------NALDYGVCEKCHSKNVIIT 104 (119)
T ss_dssp ECSSSSCEECS------CCSTTCCCSSSSSCCCEEE
T ss_pred EcCCCCCEEeC------CCCCCCcCccccCCCcEEe
Confidence 44578887754 13346 8999988755443
No 153
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.89 E-value=16 Score=28.41 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=26.9
Q ss_pred ccceeccccCcC---ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~---~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+.|..|...+.. .....=|..||..|..+-......|..|..+|.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 567777665442 233345667888887665433235777877764
No 154
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.81 E-value=50 Score=23.65 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=26.9
Q ss_pred CCCccceeccccCcCcccc--CCCCcccHhhHHHHhcc----CCCCcccccccc
Q 027341 123 EREEECGICMETNSKIVLP--NCNHAMCLKCYREWRIR----SQSCPFCRDSLK 170 (224)
Q Consensus 123 ~~~~~C~IC~~~~~~~~~~--~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~l~ 170 (224)
..+..|.+|.+.-.-...- .|-..||..|+. +.. .-.||.|+..+.
T Consensus 13 ~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4567799998532211111 366789999986 332 235777765444
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.74 E-value=44 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.384 Sum_probs=27.0
Q ss_pred ccceeccccCc--CccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-+.+. +.++..-+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccC
Confidence 57999988776 444444677788877 47888988875
No 156
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.48 E-value=24 Score=23.56 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCccceeccccCcCcccc-----CCCCcccHhhHHHHhc---------cCCCCcccccc
Q 027341 124 REEECGICMETNSKIVLP-----NCNHAMCLKCYREWRI---------RSQSCPFCRDS 168 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~-----~C~H~Fc~~Ci~~w~~---------~~~~CP~CR~~ 168 (224)
....| ||-......... .|...||..|+.--.. ..-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44567 898763333221 5888999999842111 24679999764
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.35 E-value=36 Score=24.36 Aligned_cols=29 Identities=14% Similarity=0.510 Sum_probs=19.2
Q ss_pred ccceeccccCc---------C-ccccCCCCcccHhhHHH
Q 027341 126 EECGICMETNS---------K-IVLPNCNHAMCLKCYRE 154 (224)
Q Consensus 126 ~~C~IC~~~~~---------~-~~~~~C~H~Fc~~Ci~~ 154 (224)
..|.+|..... + .....|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 35888876431 1 23346889999999864
No 158
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.18 E-value=16 Score=24.62 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=24.3
Q ss_pred cceeccccCcCc---cccCCCCcccHhhHHHHhcc-----CCCCcccc
Q 027341 127 ECGICMETNSKI---VLPNCNHAMCLKCYREWRIR-----SQSCPFCR 166 (224)
Q Consensus 127 ~C~IC~~~~~~~---~~~~C~H~Fc~~Ci~~w~~~-----~~~CP~CR 166 (224)
.|.||....... ..-.|...||..|+.+=+.. .=.||.|+
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 678888643332 22367788999998753322 22577774
No 159
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.91 E-value=40 Score=24.03 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=31.9
Q ss_pred CccceeccccCcC-ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNSK-IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~-~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
-+.|..|...+.. .....=|..+|..|..+. ....|..|..+|.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 3678888776654 333446778999998663 3578999999887
No 160
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.70 E-value=31 Score=22.57 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=26.6
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-+.+...++..-+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCC
Confidence 47888888766555555667777777 47888988775
No 161
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.70 E-value=33 Score=22.15 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=26.1
Q ss_pred ccceeccccCcC----ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-..+.. .++..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 468888887664 44444666788877 37888888775
No 162
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.04 E-value=56 Score=24.69 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=30.7
Q ss_pred CCccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 124 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 124 ~~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
+-+.|..|...+.......=|..+|..|..+-. ...|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 347788887766553334467789999986643 457888887775
No 163
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.93 E-value=44 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=26.4
Q ss_pred ccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-+.+....+..-+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 46888887666555555677777777 37888988874
No 164
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.59 E-value=45 Score=21.45 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=26.6
Q ss_pred CccceeccccCc-CccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNS-KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
...|+.|-+.+. ...+..-+..||..| ..|..|+.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccC
Confidence 357999988766 333334566777777 47889988876
No 165
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.56 E-value=51 Score=25.26 Aligned_cols=44 Identities=11% Similarity=0.280 Sum_probs=28.3
Q ss_pred CccceeccccCcCccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 125 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 125 ~~~C~IC~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
-+.|..|...+.......=|..+|..|..+- ....|..|..+|.
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred cCccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccC
Confidence 3567777665554322334667888887653 3468889988775
No 166
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.95 E-value=25 Score=19.97 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=7.8
Q ss_pred CCCcccccccc
Q 027341 160 QSCPFCRDSLK 170 (224)
Q Consensus 160 ~~CP~CR~~l~ 170 (224)
..||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 46888877664
No 167
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=20.65 E-value=35 Score=26.04 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=28.0
Q ss_pred CCccceeccccCcC----ccccCCCCcccHhhHHHH--h---ccCCCCcccccc
Q 027341 124 REEECGICMETNSK----IVLPNCNHAMCLKCYREW--R---IRSQSCPFCRDS 168 (224)
Q Consensus 124 ~~~~C~IC~~~~~~----~~~~~C~H~Fc~~Ci~~w--~---~~~~~CP~CR~~ 168 (224)
+...| +|.....+ ...-.|...||..|+.-- . ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 99875431 122358889999998421 1 234689999864
No 168
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.50 E-value=32 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=25.5
Q ss_pred ccceeccccCcC--ccccCCCCcccHhhHHHHhccCCCCcccccccc
Q 027341 126 EECGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 170 (224)
Q Consensus 126 ~~C~IC~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~l~ 170 (224)
..|+.|-+.+.. .++..-+..||..|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCC--------cccccCCccC
Confidence 468888887663 344445667777773 6888888775
Done!