BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027342
MDDAIVEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNG
RLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELN
PDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSK
HSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGKS

High Scoring Gene Products

Symbol, full name Information P value
AT5G64680 protein from Arabidopsis thaliana 2.8e-18

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027342
        (224 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2174834 - symbol:AT5G64680 "AT5G64680" species...   221  2.8e-18   1


>TAIR|locus:2174834 [details] [associations]
            symbol:AT5G64680 "AT5G64680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005730 "nucleolus" evidence=IDA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] [GO:0000741
            "karyogamy" evidence=RCA] [GO:0001510 "RNA methylation"
            evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
            [GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
            [GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
            [GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
            deneddylation" evidence=RCA] [GO:0051604 "protein maturation"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
            EMBL:AB010076 GO:GO:0016592 EMBL:AK118987 EMBL:BT005670
            IPI:IPI00549047 IPI:IPI00938802 RefSeq:NP_001154796.1
            RefSeq:NP_201273.1 RefSeq:NP_851270.1 UniGene:At.24212
            IntAct:F4KF27 PRIDE:F4KF27 EnsemblPlants:AT5G64680.3 GeneID:836589
            KEGG:ath:AT5G64680 TAIR:At5g64680 eggNOG:NOG278998
            HOGENOM:HOG000006422 InParanoid:Q9FLF2 OMA:PSEESMI
            ProtClustDB:CLSN2686285 Uniprot:F4KF27
        Length = 211

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 79/212 (37%), Positives = 103/212 (48%)

Query:    21 DPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSS--------GKA 72
             + L D  L  S E WLIQ P  Q P+ +   L +E   +G  G F+DS+        G  
Sbjct:    17 EQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAK 76

Query:    73 YDIVSNDFQEPDEMVFLNYPSEPK-IVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTS 131
             YD+ S  F   D    L  PSE   IVGKI+RRV+LV YPEP E+ +    + +Q  V  
Sbjct:    77 YDLAS--FHSQDAGAELIIPSEESMIVGKITRRVALVRYPEPNELLQKMKARTQQKLV-- 132

Query:   132 SGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPN 191
                S+ N    SS +SS   N   +  H S T+SSR KS      E  K  KR+      
Sbjct:   133 --GSVTN----SSKKSS---NLTQSSRHKSGTRSSREKSMFSGFTETPKSPKRK------ 177

Query:   192 HSTDHSLGRHSEVTSL--GSSERSHQEKLKRK 221
              +++ S G+H   TS   GSSERS + K K K
Sbjct:   178 -NSESSSGKHRSSTSTVSGSSERSAKSKKKVK 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       218   0.00091  112 3  11 23  0.48    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.54u 0.16s 25.70t   Elapsed:  00:00:01
  Total cpu time:  25.54u 0.16s 25.70t   Elapsed:  00:00:01
  Start:  Fri May 10 11:08:52 2013   End:  Fri May 10 11:08:53 2013

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