BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027342
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4KF27|MDA2_ARATH Mediator-associated protein 2 OS=Arabidopsis thaliana GN=At5g64680
PE=1 SV=1
Length = 211
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 23 LVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSS--------GKAYD 74
L D L S E WLIQ P Q P+ + L +E +G G F+DS+ G YD
Sbjct: 19 LDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAKYD 78
Query: 75 IVSNDFQEPDEMVFLNYPS-EPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSG 133
+ S F D L PS E IVGKI+RRV+LV YPEP E+ + + +Q V
Sbjct: 79 LAS--FHSQDAGAELIIPSEESMIVGKITRRVALVRYPEPNELLQKMKARTQQKLV---- 132
Query: 134 ASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRA 187
S+ N SS +SS N + H S T+SSR KS E K KR+ +
Sbjct: 133 GSVTN----SSKKSS---NLTQSSRHKSGTRSSREKSMFSGFTETPKSPKRKNS 179
>sp|A3QF50|HTPG_SHELP Chaperone protein HtpG OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=htpG PE=3 SV=1
Length = 639
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 28/111 (25%)
Query: 38 QWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKI 97
+W + +FDGK+L RG+ LG ED++ K + QE L SE +
Sbjct: 477 EWLINHLSEFDGKQLHSVTRGDLELGELEDAAEK-------EAQEK-----LETESEGLV 524
Query: 98 VGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSS 148
K V+E+ DK+ ++ VTS P A +G+ S
Sbjct: 525 ----------------KRVKEVLGDKVAEVKVTSRLTDTPACVVAGAGEMS 559
>sp|A5DSB5|SQS1_LODEL Protein SQS1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=SQS1 PE=3
SV=1
Length = 792
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 136 MPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEG--GEPSKHSKRRRAHEPN 191
+PN A G++ RR E ++YT+S RY+ F+ + P + K + ++PN
Sbjct: 60 IPNGEMAEVGRNMGRRRYGKLAEEAAYTESHRYEDFASKTFRNRPIEFIKAKEVYDPN 117
>sp|A8FX83|HTPG_SHESH Chaperone protein HtpG OS=Shewanella sediminis (strain HAW-EB3)
GN=htpG PE=3 SV=1
Length = 638
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 38 QWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGK 71
+W + DFDGK+L RG+ LG ED+ K
Sbjct: 476 EWLINHLTDFDGKQLHSVTRGDLELGDLEDAGEK 509
>sp|B0TP05|HTPG_SHEHH Chaperone protein HtpG OS=Shewanella halifaxensis (strain HAW-EB4)
GN=htpG PE=3 SV=1
Length = 639
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 9 YKPTEEYEEELRDPLVDLSLIDSTELWLI-----QWPYKQMPDFDGKELSLELRGNGRLG 63
+ + YE P ++L E+ L+ +W + +FDGK+L RG+ LG
Sbjct: 443 FIVADSYEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEFDGKKLHSVTRGDLELG 502
Query: 64 SFEDSSGK 71
ED+S K
Sbjct: 503 ELEDASEK 510
>sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP4 PE=3 SV=1
Length = 869
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 26 LSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGK 71
L L D T L + Y M D K LSL L+G LG+ SGK
Sbjct: 63 LPLSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGK 108
>sp|Q46YS9|HTPG_CUPPJ Chaperone protein HtpG OS=Cupriavidus pinatubonensis (strain JMP134
/ LMG 1197) GN=htpG PE=3 SV=1
Length = 633
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 26 LSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKA 72
L L D + W++ + + +FDGKEL RG+ LGS D + KA
Sbjct: 467 LLLTDRVDEWMLSF----LREFDGKELVSVARGDLDLGSLADEAEKA 509
>sp|Q60841|RELN_MOUSE Reelin OS=Mus musculus GN=Reln PE=1 SV=3
Length = 3461
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 82 EPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHV 129
+P E V L+Y + I K+ S V+Y EP+ + PD RQ +
Sbjct: 791 QPGEGVLLHYSYDNGITWKLLEHYSYVNYHEPRIISVELPDDARQFGI 838
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,806,232
Number of Sequences: 539616
Number of extensions: 4030080
Number of successful extensions: 8639
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 8395
Number of HSP's gapped (non-prelim): 322
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)