Query 027342
Match_columns 224
No_of_seqs 17 out of 19
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 13:57:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027342.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027342hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y9qa2 b.82.1.15 (A:83-181) P 69.1 11 0.00077 25.2 7.3 69 33-111 23-98 (99)
2 d1mgqa_ b.38.1.1 (A:) Archaeal 35.1 2.9 0.00021 27.7 -0.6 29 37-65 4-36 (74)
3 d1txka1 b.1.18.2 (A:397-511) G 34.5 7.4 0.00054 28.1 1.6 12 32-43 104-115 (115)
4 d2o2aa1 d.33.1.2 (A:1-124) Hyp 29.6 28 0.002 26.2 4.2 51 67-124 43-95 (124)
5 d1zkha1 d.15.1.1 (A:1-86) Spli 28.7 15 0.0011 24.6 2.3 30 37-66 6-38 (86)
6 d2retb1 d.24.1.5 (B:32-197) Ty 28.5 13 0.00092 27.3 2.0 26 35-62 127-153 (166)
7 d3ci0j1 d.24.1.5 (J:39-192) Ps 24.0 17 0.0013 26.5 2.0 24 35-60 118-142 (154)
8 d2hnga1 d.33.1.2 (A:5-128) Hyp 21.4 27 0.0019 26.3 2.6 49 68-125 46-96 (124)
9 d2j44a2 b.3.1.3 (A:7-109) Pull 14.7 24 0.0017 24.7 0.8 17 22-38 81-97 (103)
10 d2gj6d1 b.1.1.1 (D:15-114) T-c 14.4 47 0.0034 21.4 2.3 52 33-90 18-74 (94)
No 1
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=69.13 E-value=11 Score=25.21 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=49.8
Q ss_pred eeEEEecCCCC-C---CCCCC-ceeEEeecCCcceeeeecCCCCeeeeeeccCCCCCeeEEeeCCC--CCcccceeeeEE
Q 027342 33 ELWLIQWPYKQ-M---PDFDG-KELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPS--EPKIVGKISRRV 105 (224)
Q Consensus 33 ELWLIQ~P~~~-~---~Df~G-~~lslkl~~DG~Lg~Fe~SsGK~YdlVS~~aq~pdatvfvpS~~--e~~ivgKIsRRV 105 (224)
|+|+|.++-+. . +-.++ .|+-+=+++.+.|.- +|+.|.|- +.-.+++|+.. .....|+-...+
T Consensus 23 e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~----~~~~~~l~------~GD~~~~~~~~~H~~~n~~~~~~~~ 92 (99)
T d1y9qa2 23 EIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF----DEQWHELQ------QGEHIRFFSDQPHGYAAVTEKAVFQ 92 (99)
T ss_dssp EEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE----TTEEEEEC------TTCEEEEECSSSEEEEESSSCEEEE
T ss_pred EEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEe----cceEEEec------CCCEEEECCCCeEEEEeCCccCEEE
Confidence 89999999875 2 22334 688888999987754 67888873 34455666644 336677778899
Q ss_pred EeeecC
Q 027342 106 SLVHYP 111 (224)
Q Consensus 106 sLVryp 111 (224)
+++.||
T Consensus 93 ~vi~~P 98 (99)
T d1y9qa2 93 NIVAYP 98 (99)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999998
No 2
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.09 E-value=2.9 Score=27.67 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=22.9
Q ss_pred EecCCCCCCCCCCceeEEeecCC----cceeee
Q 027342 37 IQWPYKQMPDFDGKELSLELRGN----GRLGSF 65 (224)
Q Consensus 37 IQ~P~~~~~Df~G~~lslkl~~D----G~Lg~F 65 (224)
||.|++-+..+-|+++.|++.++ |.|-.|
T Consensus 4 ~~~Pl~~L~~~~~k~V~V~lk~g~~~~G~L~~~ 36 (74)
T d1mgqa_ 4 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSF 36 (74)
T ss_dssp TTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEE
T ss_pred ccCcHHHHHHhCCCeEEEEECCCCEEEEEEEEE
Confidence 58899888888899999999865 444444
No 3
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.53 E-value=7.4 Score=28.12 Aligned_cols=12 Identities=33% Similarity=0.698 Sum_probs=10.2
Q ss_pred ceeEEEecCCCC
Q 027342 32 TELWLIQWPYKQ 43 (224)
Q Consensus 32 tELWLIQ~P~~~ 43 (224)
+|-||-|||.|.
T Consensus 104 SETWlYq~~~~~ 115 (115)
T d1txka1 104 SETWSYQLPANE 115 (115)
T ss_dssp EEEEEEEECTTS
T ss_pred cceEeeecCCCC
Confidence 399999999873
No 4
>d2o2aa1 d.33.1.2 (A:1-124) Hypothetical protein gbs1413 {Streptococcus agalactiae [TaxId: 1311]}
Probab=29.61 E-value=28 Score=26.17 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=38.1
Q ss_pred cCCCCeeeeeeccCCCCCeeEEeeCCCCCcccceeeeEEEeee--cCChhhhhccCCccc
Q 027342 67 DSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVH--YPEPKEVEELNPDKI 124 (224)
Q Consensus 67 ~SsGK~YdlVS~~aq~pdatvfvpS~~e~~ivgKIsRRVsLVr--ypeP~Elek~~~~~~ 124 (224)
+.-|+.|.++. ..=|++-..++.|-|.|||-|-|.- +.+|.||++-..+.|
T Consensus 43 d~e~~~~~i~~-------~l~f~~v~~~F~iSG~IsQivqi~dr~~g~~sd~~q~e~~~L 95 (124)
T d2o2aa1 43 DEAAKVTSIVA-------VLQFVIVRDEFVISGVISQMAHIQGRLINEPSEFSQDEVENL 95 (124)
T ss_dssp ETTTTEEEEEE-------EEEEEEECSSEEEEEEEEEEEEEETCCCSCGGGSCHHHHHHH
T ss_pred ccccCceEEEE-------EEEEEeccccEEEEeeeeeeeeecccccCCcccCCHHHHHHH
Confidence 44588888872 2336677778999999999999986 689999987544444
No 5
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.71 E-value=15 Score=24.65 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.0
Q ss_pred EecCCCCC-C--CCCCceeEEeecCCcceeeee
Q 027342 37 IQWPYKQM-P--DFDGKELSLELRGNGRLGSFE 66 (224)
Q Consensus 37 IQ~P~~~~-~--Df~G~~lslkl~~DG~Lg~Fe 66 (224)
+|.|-..- + .|+|+.++|+.+.+-.+..++
T Consensus 6 v~~p~~~~~~~~~L~G~~~~l~v~~~~tV~~lK 38 (86)
T d1zkha1 6 VQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIK 38 (86)
T ss_dssp EECCCCSSSSSSSCSSCEEEEEECTTSBHHHHH
T ss_pred EEcCCCCcccccccCCeEEEEEECCCChHHHHH
Confidence 56776664 4 389999999999887777765
No 6
>d2retb1 d.24.1.5 (B:32-197) Type II secretory pathway component EpsJ {Vibrio vulnificus [TaxId: 672]}
Probab=28.46 E-value=13 Score=27.35 Aligned_cols=26 Identities=23% Similarity=0.779 Sum_probs=16.2
Q ss_pred EEEecCCCC-CCCCCCceeEEeecCCcce
Q 027342 35 WLIQWPYKQ-MPDFDGKELSLELRGNGRL 62 (224)
Q Consensus 35 WLIQ~P~~~-~~Df~G~~lslkl~~DG~L 62 (224)
|+-+||..+ +|. +-+|+|++.+-|.|
T Consensus 127 W~~~W~~~~~lP~--aVei~l~~~~~g~i 153 (166)
T d2retb1 127 WINEWSNELTLPA--AISVELTLKDYGKI 153 (166)
T ss_dssp EESCCCCSSBCCS--EEEEEEEETTTEEE
T ss_pred ccccCCCCCCCCc--eEEEEEEeCCCceE
Confidence 777777555 465 66666666655543
No 7
>d3ci0j1 d.24.1.5 (J:39-192) Pseudopilin GspJ {Escherichia coli [TaxId: 562]}
Probab=23.97 E-value=17 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=10.9
Q ss_pred EEEecCCCC-CCCCCCceeEEeecCCc
Q 027342 35 WLIQWPYKQ-MPDFDGKELSLELRGNG 60 (224)
Q Consensus 35 WLIQ~P~~~-~~Df~G~~lslkl~~DG 60 (224)
|+-+||-++ +|. +-+|+|++.+-|
T Consensus 118 W~~~Wp~~~~lP~--aVei~l~~~~~g 142 (154)
T d3ci0j1 118 WQESWSSVQAIPV--AVRMTLHSPQWG 142 (154)
T ss_dssp EESCCCCSSCCCS--EEEEEEEETTTE
T ss_pred ccccCCCCCCCCc--eEEEEEEECCCc
Confidence 555554433 343 444444444434
No 8
>d2hnga1 d.33.1.2 (A:5-128) Hypothetical protein SP1558 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=21.36 E-value=27 Score=26.27 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=33.8
Q ss_pred CCCCeeeeeeccCCCCCeeEEeeCCCCCcccceeeeEEEee-ec-CChhhhhccCCcccc
Q 027342 68 SSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLV-HY-PEPKEVEELNPDKIR 125 (224)
Q Consensus 68 SsGK~YdlVS~~aq~pdatvfvpS~~e~~ivgKIsRRVsLV-ry-peP~Elek~~~~~~~ 125 (224)
..|+.|.++-. -.+| ..++.|-|.||+=|-|. |+ .+|.||++-..+.|.
T Consensus 46 ~~g~~~~v~l~-------F~vv--~~~F~iSG~IsQivqi~d~~~g~~sdl~q~e~~~Ls 96 (124)
T d2hnga1 46 NQVTSLIVILS-------FMIV--FDKFVISGTISQVNHIDGRIVNEPSELNQEEVETLA 96 (124)
T ss_dssp TTEEEEEEEEE-------EEEE--CSSEEEEEEEEEEEEEETCCCSSGGGSCHHHHHHHH
T ss_pred hcCcEEEEEEE-------EEEe--ccceEEEeeEeeeeeecccccCCcccCCHHHHHHHH
Confidence 36778877622 1123 34688999999999995 45 899999875555443
No 9
>d2j44a2 b.3.1.3 (A:7-109) Pullulanase PulA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=14.66 E-value=24 Score=24.74 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=11.5
Q ss_pred cccCCCCCCCceeEEEe
Q 027342 22 PLVDLSLIDSTELWLIQ 38 (224)
Q Consensus 22 ~l~d~~ltDStELWLIQ 38 (224)
.-.++..++..|+||+|
T Consensus 81 ~~i~l~~~~~~EvWi~q 97 (103)
T d2j44a2 81 KSVEKLVPKMNEAWLDQ 97 (103)
T ss_dssp EEEECSSTTCCEEEECT
T ss_pred cEEEccCCCccEEEEEc
Confidence 33345555667999997
No 10
>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}
Probab=14.45 E-value=47 Score=21.40 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=31.7
Q ss_pred eeEEEecCCCCCCCCCCceeEEeec-----CCcceeeeecCCCCeeeeeeccCCCCCeeEEee
Q 027342 33 ELWLIQWPYKQMPDFDGKELSLELR-----GNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLN 90 (224)
Q Consensus 33 ELWLIQ~P~~~~~Df~G~~lslkl~-----~DG~Lg~Fe~SsGK~YdlVS~~aq~pdatvfvp 90 (224)
=+|..|-|- +-|. +-+... .+|.+..-.+.+++.+.|.--.+|.-|+-+|.=
T Consensus 18 ~~Wyrq~~g-~~p~-----~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyC 74 (94)
T d2gj6d1 18 FFWYRQYSG-KSPE-----LIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLC 74 (94)
T ss_dssp EEEEEECTT-SCCE-----EEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EEEEEECCC-cccc-----cceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCcccee
Confidence 579999884 3332 112222 234443333466788999988888888777764
Done!