Query 027344
Match_columns 224
No_of_seqs 180 out of 1073
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08538 DUF1749: Protein of u 100.0 3.2E-29 7E-34 225.4 14.3 144 69-212 6-157 (303)
2 KOG4840 Predicted hydrolases o 99.9 3.8E-28 8.1E-33 210.0 9.4 149 63-212 5-153 (299)
3 COG2267 PldB Lysophospholipase 99.8 1.1E-18 2.3E-23 157.0 14.8 118 80-207 16-146 (298)
4 PLN02298 hydrolase, alpha/beta 99.8 9E-18 2E-22 150.0 15.2 115 81-204 40-170 (330)
5 PHA02857 monoglyceride lipase; 99.8 1.2E-17 2.6E-22 144.5 14.9 117 79-205 6-134 (276)
6 PRK00870 haloalkane dehalogena 99.8 2.4E-17 5.2E-22 145.3 15.7 118 71-202 18-149 (302)
7 PRK10749 lysophospholipase L2; 99.8 2.4E-17 5.1E-22 148.4 15.6 113 81-203 38-166 (330)
8 PLN02385 hydrolase; alpha/beta 99.8 2.1E-17 4.5E-22 149.5 15.0 116 80-204 68-198 (349)
9 PLN02824 hydrolase, alpha/beta 99.7 4.6E-17 1E-21 142.6 15.3 116 71-203 7-137 (294)
10 PRK03592 haloalkane dehalogena 99.7 1E-16 2.3E-21 140.4 14.3 106 82-202 15-127 (295)
11 PLN02679 hydrolase, alpha/beta 99.7 1.2E-16 2.6E-21 146.0 14.5 130 59-202 46-190 (360)
12 TIGR03343 biphenyl_bphD 2-hydr 99.7 1.4E-16 3.1E-21 137.2 14.2 119 72-202 5-135 (282)
13 TIGR02240 PHA_depoly_arom poly 99.7 1E-16 2.2E-21 139.4 13.1 107 82-203 10-126 (276)
14 PLN02652 hydrolase; alpha/beta 99.7 1.9E-16 4.1E-21 147.6 15.4 123 74-204 111-246 (395)
15 PF12697 Abhydrolase_6: Alpha/ 99.7 3E-16 6.4E-21 126.6 13.7 96 97-207 1-105 (228)
16 PRK03204 haloalkane dehalogena 99.7 3.9E-16 8.4E-21 137.8 15.2 120 71-203 13-136 (286)
17 PLN02211 methyl indole-3-aceta 99.7 1.5E-16 3.2E-21 140.3 12.1 108 82-202 5-121 (273)
18 TIGR03101 hydr2_PEP hydrolase, 99.7 6.5E-16 1.4E-20 137.4 15.8 104 93-204 24-135 (266)
19 PRK10349 carboxylesterase BioH 99.7 2.7E-16 5.9E-21 134.7 10.6 105 85-202 3-108 (256)
20 TIGR01607 PST-A Plasmodium sub 99.7 5E-16 1.1E-20 140.9 12.8 108 92-203 19-185 (332)
21 PLN02965 Probable pheophorbida 99.7 4.7E-16 1E-20 134.0 12.0 93 96-202 5-106 (255)
22 PRK10985 putative hydrolase; P 99.7 1.4E-15 3.1E-20 136.7 15.1 109 93-207 57-172 (324)
23 TIGR03611 RutD pyrimidine util 99.7 5.5E-16 1.2E-20 129.1 11.3 98 93-205 12-117 (257)
24 PRK08775 homoserine O-acetyltr 99.7 5.3E-16 1.1E-20 140.2 12.0 136 56-203 18-173 (343)
25 TIGR01250 pro_imino_pep_2 prol 99.6 6.5E-15 1.4E-19 124.1 16.1 103 93-204 24-132 (288)
26 PRK11126 2-succinyl-6-hydroxy- 99.6 1.1E-15 2.4E-20 128.9 11.5 94 94-203 2-102 (242)
27 PLN02511 hydrolase 99.6 2.7E-15 5.8E-20 139.0 14.9 105 93-205 99-212 (388)
28 TIGR03056 bchO_mg_che_rel puta 99.6 2.7E-15 5.9E-20 127.7 13.5 107 82-203 14-130 (278)
29 TIGR03695 menH_SHCHC 2-succiny 99.6 3.1E-15 6.7E-20 122.4 12.0 99 94-203 1-105 (251)
30 TIGR02427 protocat_pcaD 3-oxoa 99.6 2E-15 4.3E-20 124.2 10.1 96 93-203 12-114 (251)
31 KOG1455 Lysophospholipase [Lip 99.6 4.1E-15 8.8E-20 133.7 12.8 115 80-203 34-164 (313)
32 PLN02578 hydrolase 99.6 6.9E-15 1.5E-19 133.8 13.9 106 82-202 74-186 (354)
33 PRK10673 acyl-CoA esterase; Pr 99.6 4.2E-15 9.2E-20 126.0 11.5 93 93-200 15-113 (255)
34 TIGR01738 bioH putative pimelo 99.6 3.5E-15 7.5E-20 122.6 10.2 96 94-202 4-99 (245)
35 PRK06489 hypothetical protein; 99.6 9.7E-15 2.1E-19 133.0 13.7 112 82-202 48-188 (360)
36 TIGR01392 homoserO_Ac_trn homo 99.6 5E-15 1.1E-19 134.2 10.5 118 82-204 14-163 (351)
37 TIGR01249 pro_imino_pep_1 prol 99.6 1.7E-14 3.7E-19 128.1 12.4 111 83-204 14-131 (306)
38 KOG4409 Predicted hydrolase/ac 99.6 2.4E-14 5.3E-19 130.9 12.4 103 93-206 89-198 (365)
39 TIGR03100 hydr1_PEP hydrolase, 99.6 8.2E-14 1.8E-18 122.7 15.2 104 93-204 25-135 (274)
40 PLN02894 hydrolase, alpha/beta 99.6 4.1E-14 9E-19 131.7 13.8 99 93-202 104-210 (402)
41 PLN03087 BODYGUARD 1 domain co 99.6 4.2E-14 9.2E-19 135.1 14.1 118 77-203 178-309 (481)
42 PLN03084 alpha/beta hydrolase 99.6 6.4E-14 1.4E-18 130.3 14.3 109 81-204 112-233 (383)
43 KOG4178 Soluble epoxide hydrol 99.6 6.7E-14 1.5E-18 127.0 13.8 117 69-201 19-146 (322)
44 PRK07581 hypothetical protein; 99.6 2E-14 4.4E-19 129.0 10.3 124 72-202 12-158 (339)
45 TIGR01836 PHA_synth_III_C poly 99.5 8.6E-14 1.9E-18 126.3 13.0 105 94-205 62-173 (350)
46 PF12695 Abhydrolase_5: Alpha/ 99.5 3.2E-13 7E-18 105.1 13.2 95 96-204 1-96 (145)
47 PRK13604 luxD acyl transferase 99.5 1.5E-13 3.3E-18 124.6 12.6 105 93-206 36-144 (307)
48 PRK14875 acetoin dehydrogenase 99.5 2.1E-13 4.5E-18 122.3 12.9 107 85-202 120-231 (371)
49 PRK00175 metX homoserine O-ace 99.5 2.5E-13 5.5E-18 125.0 12.0 115 82-203 31-182 (379)
50 PRK05077 frsA fermentation/res 99.5 1.2E-12 2.7E-17 122.6 15.1 103 93-204 193-301 (414)
51 cd00707 Pancreat_lipase_like P 99.5 1E-12 2.2E-17 116.9 13.4 103 93-203 35-147 (275)
52 PRK10566 esterase; Provisional 99.4 9.9E-13 2.2E-17 112.2 12.2 87 93-186 26-128 (249)
53 KOG1838 Alpha/beta hydrolase [ 99.4 2.4E-12 5.2E-17 120.2 15.3 127 71-203 92-236 (409)
54 TIGR03230 lipo_lipase lipoprot 99.4 1.3E-12 2.9E-17 123.6 13.3 104 93-203 40-154 (442)
55 PRK05855 short chain dehydroge 99.4 1.1E-12 2.4E-17 124.0 12.5 108 80-199 9-127 (582)
56 PLN00021 chlorophyllase 99.4 5.4E-12 1.2E-16 114.5 14.3 107 92-205 50-168 (313)
57 PRK11071 esterase YqiA; Provis 99.4 3.7E-12 7.9E-17 107.3 12.2 92 95-205 2-95 (190)
58 PLN02980 2-oxoglutarate decarb 99.4 8.7E-12 1.9E-16 133.6 15.4 120 72-202 1344-1479(1655)
59 PF07819 PGAP1: PGAP1-like pro 99.4 7.4E-12 1.6E-16 108.6 12.1 107 93-202 3-122 (225)
60 TIGR01840 esterase_phb esteras 99.3 1.1E-11 2.3E-16 105.0 10.8 106 92-202 11-129 (212)
61 COG1647 Esterase/lipase [Gener 99.3 4.1E-11 8.9E-16 104.1 13.4 104 84-202 7-117 (243)
62 TIGR03502 lipase_Pla1_cef extr 99.3 2.5E-11 5.5E-16 121.6 13.6 101 94-201 449-599 (792)
63 KOG1454 Predicted hydrolase/ac 99.3 1.1E-11 2.3E-16 113.2 9.0 101 92-202 56-165 (326)
64 TIGR01838 PHA_synth_I poly(R)- 99.3 5.7E-11 1.2E-15 114.9 14.5 126 72-205 163-304 (532)
65 PLN02872 triacylglycerol lipas 99.3 4.3E-12 9.4E-17 118.6 6.2 109 93-203 73-197 (395)
66 TIGR02821 fghA_ester_D S-formy 99.3 1.2E-10 2.5E-15 102.8 15.0 108 93-205 41-175 (275)
67 COG0429 Predicted hydrolase of 99.3 1.3E-10 2.7E-15 106.1 14.8 119 93-213 74-195 (345)
68 COG0596 MhpC Predicted hydrola 99.3 5.1E-11 1.1E-15 95.7 10.2 99 94-204 21-124 (282)
69 PLN02442 S-formylglutathione h 99.2 1.9E-10 4E-15 102.3 13.3 110 93-205 46-180 (283)
70 PF00561 Abhydrolase_1: alpha/ 99.2 4.5E-11 9.7E-16 98.3 8.7 71 125-202 1-78 (230)
71 PF07859 Abhydrolase_3: alpha/ 99.2 8.8E-11 1.9E-15 97.9 10.0 105 97-205 1-112 (211)
72 PRK10162 acetyl esterase; Prov 99.2 1.6E-10 3.5E-15 104.2 12.3 116 86-205 73-197 (318)
73 PRK07868 acyl-CoA synthetase; 99.2 2E-10 4.3E-15 117.9 14.4 109 93-204 66-178 (994)
74 TIGR00976 /NonD putative hydro 99.2 8.5E-11 1.8E-15 113.4 10.4 107 93-206 21-135 (550)
75 KOG2564 Predicted acetyltransf 99.2 3.1E-10 6.7E-15 101.8 12.0 101 93-203 73-182 (343)
76 KOG1552 Predicted alpha/beta h 99.1 4.4E-10 9.6E-15 99.4 10.9 108 86-205 51-165 (258)
77 PF05990 DUF900: Alpha/beta hy 99.1 7.5E-10 1.6E-14 96.6 11.8 121 92-213 16-147 (233)
78 PF00326 Peptidase_S9: Prolyl 99.1 2.2E-10 4.7E-15 96.3 6.7 89 115-207 5-103 (213)
79 PRK06765 homoserine O-acetyltr 99.0 1.3E-09 2.8E-14 101.8 10.6 116 83-201 40-194 (389)
80 PF12740 Chlorophyllase2: Chlo 99.0 4.2E-09 9.1E-14 93.7 12.6 116 82-204 4-132 (259)
81 TIGR01839 PHA_synth_II poly(R) 99.0 3.3E-09 7.1E-14 103.0 12.7 130 72-206 190-331 (560)
82 PF06821 Ser_hydrolase: Serine 99.0 1.3E-09 2.7E-14 91.1 8.6 90 97-204 1-92 (171)
83 PF01674 Lipase_2: Lipase (cla 99.0 1.3E-09 2.7E-14 94.8 8.8 87 94-186 1-96 (219)
84 PRK11460 putative hydrolase; P 99.0 5.3E-09 1.2E-13 90.4 12.5 103 93-201 15-136 (232)
85 PLN02733 phosphatidylcholine-s 99.0 3E-09 6.6E-14 100.9 10.1 90 110-204 107-202 (440)
86 PF12146 Hydrolase_4: Putative 98.9 4.4E-09 9.6E-14 77.4 7.1 57 93-156 15-79 (79)
87 KOG4667 Predicted esterase [Li 98.9 9.2E-09 2E-13 89.6 10.1 107 92-204 31-140 (269)
88 KOG2382 Predicted alpha/beta h 98.9 6.8E-09 1.5E-13 94.4 9.6 97 93-199 51-155 (315)
89 PF06500 DUF1100: Alpha/beta h 98.9 5.3E-09 1.1E-13 98.3 9.0 126 70-204 163-297 (411)
90 COG0657 Aes Esterase/lipase [L 98.9 2.2E-08 4.7E-13 89.4 10.9 111 93-207 78-195 (312)
91 PF01738 DLH: Dienelactone hyd 98.8 2.7E-08 5.9E-13 84.1 10.8 99 93-201 13-130 (218)
92 PF06342 DUF1057: Alpha/beta h 98.8 8.5E-08 1.8E-12 86.2 14.1 98 93-202 34-136 (297)
93 PRK10115 protease 2; Provision 98.8 2E-08 4.3E-13 99.9 11.0 111 93-208 444-564 (686)
94 PF06028 DUF915: Alpha/beta hy 98.8 2.5E-08 5.5E-13 88.5 10.4 107 93-202 10-142 (255)
95 PF07224 Chlorophyllase: Chlor 98.8 1.5E-08 3.3E-13 90.4 8.7 107 92-206 44-160 (307)
96 COG2021 MET2 Homoserine acetyl 98.8 3.4E-08 7.3E-13 91.4 11.2 137 62-201 12-180 (368)
97 COG4782 Uncharacterized protei 98.8 6.6E-08 1.4E-12 89.3 11.9 119 93-213 115-244 (377)
98 PF10230 DUF2305: Uncharacteri 98.8 9.6E-08 2.1E-12 84.7 12.3 102 94-202 2-121 (266)
99 PF00975 Thioesterase: Thioest 98.8 1.1E-07 2.4E-12 80.0 12.0 100 95-201 1-102 (229)
100 PF02450 LCAT: Lecithin:choles 98.8 1.7E-08 3.7E-13 94.1 7.4 87 112-204 66-161 (389)
101 COG1506 DAP2 Dipeptidyl aminop 98.7 6E-08 1.3E-12 95.3 11.0 104 95-204 395-508 (620)
102 PF05728 UPF0227: Uncharacteri 98.7 2.1E-07 4.6E-12 79.0 12.0 93 96-207 1-95 (187)
103 PF00151 Lipase: Lipase; Inte 98.7 8.3E-08 1.8E-12 88.0 9.7 110 93-203 70-187 (331)
104 PF12048 DUF3530: Protein of u 98.7 6.6E-07 1.4E-11 81.3 14.5 127 93-222 86-249 (310)
105 COG0412 Dienelactone hydrolase 98.7 4.1E-07 8.9E-12 79.5 12.4 100 94-200 27-143 (236)
106 PF02230 Abhydrolase_2: Phosph 98.6 3.2E-07 6.9E-12 77.9 9.6 108 91-204 11-141 (216)
107 PF03403 PAF-AH_p_II: Platelet 98.6 2.7E-07 5.8E-12 86.1 9.1 104 93-203 99-262 (379)
108 COG2945 Predicted hydrolase of 98.6 6.4E-07 1.4E-11 76.7 10.5 107 93-203 27-137 (210)
109 KOG2624 Triglyceride lipase-ch 98.6 1.5E-07 3.2E-12 88.6 7.2 114 92-205 71-201 (403)
110 COG1075 LipA Predicted acetylt 98.5 2.6E-07 5.6E-12 84.7 8.4 107 93-206 58-167 (336)
111 KOG4391 Predicted alpha/beta h 98.5 2.9E-07 6.2E-12 80.6 7.4 104 91-204 75-185 (300)
112 PF05057 DUF676: Putative seri 98.5 5.5E-07 1.2E-11 77.4 8.7 22 165-186 78-99 (217)
113 PF02129 Peptidase_S15: X-Pro 98.5 7.3E-07 1.6E-11 78.4 8.8 109 93-204 19-137 (272)
114 PF06057 VirJ: Bacterial virul 98.5 7.5E-07 1.6E-11 76.1 8.4 102 96-202 4-106 (192)
115 PRK10252 entF enterobactin syn 98.5 1.3E-06 2.8E-11 90.9 11.7 98 93-201 1067-1169(1296)
116 COG3545 Predicted esterase of 98.4 9.8E-07 2.1E-11 74.4 8.7 91 95-202 3-93 (181)
117 KOG1515 Arylacetamide deacetyl 98.4 1.9E-06 4E-11 79.5 11.1 110 93-206 89-210 (336)
118 PLN02517 phosphatidylcholine-s 98.4 4.8E-07 1E-11 88.4 7.3 88 113-202 158-262 (642)
119 cd00312 Esterase_lipase Estera 98.4 9.7E-07 2.1E-11 83.4 8.5 108 93-204 94-214 (493)
120 KOG4627 Kynurenine formamidase 98.4 1.3E-06 2.7E-11 76.0 8.2 123 77-207 48-176 (270)
121 COG3571 Predicted hydrolase of 98.4 3.9E-06 8.4E-11 70.6 10.7 100 93-200 13-121 (213)
122 PF10503 Esterase_phd: Esteras 98.4 2.6E-06 5.6E-11 74.2 9.7 104 93-202 15-131 (220)
123 COG4757 Predicted alpha/beta h 98.4 1.3E-06 2.8E-11 77.0 7.6 85 94-185 30-125 (281)
124 PF00756 Esterase: Putative es 98.3 1.7E-06 3.7E-11 74.0 7.6 48 152-202 100-149 (251)
125 KOG3724 Negative regulator of 98.3 2.8E-06 6.1E-11 84.9 9.8 107 93-200 88-217 (973)
126 KOG2369 Lecithin:cholesterol a 98.3 2.3E-06 4.9E-11 81.4 8.6 100 100-201 110-223 (473)
127 TIGR01849 PHB_depoly_PhaZ poly 98.2 2.2E-05 4.9E-10 74.0 13.2 116 83-206 86-211 (406)
128 KOG2281 Dipeptidyl aminopeptid 98.2 4.1E-06 8.8E-11 82.3 7.9 136 66-206 614-765 (867)
129 COG3319 Thioesterase domains o 98.2 2.3E-05 4.9E-10 69.8 11.6 102 95-204 1-104 (257)
130 PF10340 DUF2424: Protein of u 98.1 1.4E-05 3.1E-10 74.6 10.0 111 93-206 121-238 (374)
131 COG2272 PnbA Carboxylesterase 98.1 6.9E-06 1.5E-10 78.6 8.0 109 93-204 93-218 (491)
132 PF05677 DUF818: Chlamydia CHL 98.1 2.7E-05 5.7E-10 72.0 11.2 114 72-186 112-236 (365)
133 COG3208 GrsT Predicted thioest 98.1 1.3E-05 2.8E-10 70.8 8.5 100 93-200 6-109 (244)
134 PF05448 AXE1: Acetyl xylan es 98.1 5.1E-05 1.1E-09 69.4 12.6 109 93-209 82-216 (320)
135 COG0400 Predicted esterase [Ge 98.1 2.1E-05 4.6E-10 67.9 9.5 107 93-206 17-137 (207)
136 PRK05371 x-prolyl-dipeptidyl a 98.1 2.3E-05 4.9E-10 79.3 11.0 88 116-206 271-376 (767)
137 PRK04940 hypothetical protein; 98.1 3.7E-05 8E-10 65.2 10.1 95 96-207 1-96 (180)
138 COG3243 PhaC Poly(3-hydroxyalk 98.1 2.1E-05 4.6E-10 74.2 9.2 135 71-207 81-221 (445)
139 COG4814 Uncharacterized protei 98.0 3.9E-05 8.5E-10 68.4 9.9 104 95-201 46-174 (288)
140 PRK10439 enterobactin/ferric e 98.0 0.00013 2.9E-09 68.8 13.6 105 93-202 208-322 (411)
141 PF12715 Abhydrolase_7: Abhydr 98.0 1.8E-05 4E-10 73.9 7.7 106 93-206 114-263 (390)
142 KOG2984 Predicted hydrolase [G 98.0 7.3E-06 1.6E-10 71.2 4.4 111 82-201 29-147 (277)
143 KOG2100 Dipeptidyl aminopeptid 98.0 2.9E-05 6.3E-10 78.4 8.9 106 94-206 526-647 (755)
144 PF00135 COesterase: Carboxyle 98.0 1.3E-05 2.9E-10 75.4 6.0 105 94-201 125-243 (535)
145 PF05577 Peptidase_S28: Serine 97.9 4.7E-05 1E-09 71.4 9.1 100 94-203 29-148 (434)
146 COG4188 Predicted dienelactone 97.9 3.6E-05 7.9E-10 71.5 8.1 90 93-185 70-179 (365)
147 smart00824 PKS_TE Thioesterase 97.9 0.00015 3.3E-09 58.6 10.9 85 112-201 14-100 (212)
148 PF07082 DUF1350: Protein of u 97.9 0.00011 2.3E-09 65.3 10.0 102 93-200 16-122 (250)
149 PLN02606 palmitoyl-protein thi 97.7 0.00043 9.4E-09 63.1 11.2 100 93-201 25-130 (306)
150 PTZ00472 serine carboxypeptida 97.7 0.00031 6.7E-09 67.2 10.2 62 145-206 148-219 (462)
151 PF09752 DUF2048: Uncharacteri 97.7 0.0008 1.7E-08 62.4 12.4 101 93-202 91-209 (348)
152 PF03096 Ndr: Ndr family; Int 97.7 0.00035 7.7E-09 63.1 9.8 103 93-204 22-135 (283)
153 cd00741 Lipase Lipase. Lipase 97.6 0.00026 5.6E-09 56.9 7.4 58 146-203 9-67 (153)
154 PF03583 LIP: Secretory lipase 97.6 0.00097 2.1E-08 59.9 11.8 96 110-209 12-119 (290)
155 PF01764 Lipase_3: Lipase (cla 97.6 0.00043 9.4E-09 54.1 8.3 68 148-215 47-119 (140)
156 COG4099 Predicted peptidase [G 97.5 0.00055 1.2E-08 62.6 9.1 43 162-207 266-308 (387)
157 cd00519 Lipase_3 Lipase (class 97.5 0.00043 9.4E-09 59.2 7.8 65 146-210 109-175 (229)
158 COG3509 LpqC Poly(3-hydroxybut 97.5 0.00084 1.8E-08 61.0 9.8 101 94-201 61-177 (312)
159 PF01083 Cutinase: Cutinase; 97.5 0.0008 1.7E-08 56.5 9.1 108 96-204 7-123 (179)
160 KOG1553 Predicted alpha/beta h 97.5 0.00068 1.5E-08 63.2 9.1 120 75-207 218-349 (517)
161 KOG2931 Differentiation-relate 97.5 0.0012 2.7E-08 60.0 10.5 103 93-204 45-158 (326)
162 PLN02633 palmitoyl protein thi 97.4 0.002 4.3E-08 59.0 11.1 101 93-201 24-129 (314)
163 PF02089 Palm_thioest: Palmito 97.4 0.0013 2.8E-08 59.4 9.4 99 94-201 5-114 (279)
164 PF02273 Acyl_transf_2: Acyl t 97.3 0.0031 6.7E-08 56.4 10.9 104 94-207 30-138 (294)
165 KOG3847 Phospholipase A2 (plat 97.2 0.0011 2.4E-08 61.0 7.7 38 93-133 117-154 (399)
166 KOG2541 Palmitoyl protein thio 97.2 0.0032 6.9E-08 56.7 9.6 99 95-201 24-126 (296)
167 PF06259 Abhydrolase_8: Alpha/ 97.2 0.011 2.3E-07 50.0 12.3 52 147-201 90-142 (177)
168 KOG3975 Uncharacterized conser 97.1 0.0086 1.9E-07 53.7 11.5 117 92-221 27-160 (301)
169 KOG2237 Predicted serine prote 97.1 0.0006 1.3E-08 67.3 4.5 109 92-206 468-587 (712)
170 PF03959 FSH1: Serine hydrolas 97.0 0.0014 3E-08 56.0 5.9 112 93-204 3-146 (212)
171 KOG3101 Esterase D [General fu 97.0 0.00087 1.9E-08 58.8 4.2 105 93-204 43-177 (283)
172 KOG2565 Predicted hydrolases o 96.9 0.0041 8.8E-08 58.5 8.4 94 95-198 153-259 (469)
173 COG3150 Predicted esterase [Ge 96.9 0.0058 1.3E-07 51.7 8.2 104 97-217 2-106 (191)
174 KOG2112 Lysophospholipase [Lip 96.8 0.0075 1.6E-07 52.2 8.8 105 94-204 3-129 (206)
175 KOG3043 Predicted hydrolase re 96.8 0.0034 7.3E-08 55.2 6.3 82 111-199 54-150 (242)
176 COG1770 PtrB Protease II [Amin 96.8 0.0057 1.2E-07 60.7 8.6 120 83-207 433-566 (682)
177 COG0627 Predicted esterase [Ge 96.8 0.0055 1.2E-07 56.2 7.9 38 166-206 153-190 (316)
178 COG2936 Predicted acyl esteras 96.6 0.0056 1.2E-07 60.1 7.4 84 119-205 75-161 (563)
179 KOG3967 Uncharacterized conser 96.6 0.013 2.7E-07 51.7 8.7 112 93-206 100-231 (297)
180 PLN02454 triacylglycerol lipas 96.6 0.0078 1.7E-07 57.1 7.9 67 147-213 208-281 (414)
181 COG3946 VirJ Type IV secretory 96.5 0.011 2.4E-07 56.0 8.3 86 94-184 260-345 (456)
182 PF08840 BAAT_C: BAAT / Acyl-C 96.5 0.0078 1.7E-07 51.6 6.6 50 149-202 4-55 (213)
183 KOG2183 Prolylcarboxypeptidase 96.5 0.0096 2.1E-07 56.6 7.4 102 95-202 81-202 (492)
184 COG2819 Predicted hydrolase of 96.4 0.0057 1.2E-07 54.8 5.4 62 147-211 116-180 (264)
185 KOG1516 Carboxylesterase and r 96.4 0.0036 7.8E-08 60.1 4.4 108 94-202 112-231 (545)
186 COG3458 Acetyl esterase (deace 96.4 0.0054 1.2E-07 55.5 5.1 102 92-202 81-209 (321)
187 PF11288 DUF3089: Protein of u 96.2 0.011 2.3E-07 51.3 5.9 70 117-187 39-117 (207)
188 PF11144 DUF2920: Protein of u 95.9 0.11 2.5E-06 49.1 11.6 57 148-207 163-223 (403)
189 PLN02571 triacylglycerol lipas 95.9 0.031 6.7E-07 53.1 7.8 62 149-210 208-282 (413)
190 PLN00413 triacylglycerol lipas 95.6 0.063 1.4E-06 51.8 8.7 68 150-217 269-343 (479)
191 PF05277 DUF726: Protein of un 95.6 0.051 1.1E-06 50.5 7.8 52 162-213 217-272 (345)
192 PF11187 DUF2974: Protein of u 95.6 0.058 1.3E-06 47.0 7.8 51 153-204 73-125 (224)
193 KOG3253 Predicted alpha/beta h 95.5 0.029 6.4E-07 55.6 6.2 102 94-200 176-283 (784)
194 PLN02162 triacylglycerol lipas 95.4 0.08 1.7E-06 51.1 8.6 66 148-213 261-333 (475)
195 PLN02408 phospholipase A1 95.0 0.09 1.9E-06 49.3 7.5 62 149-210 182-248 (365)
196 PF11339 DUF3141: Protein of u 94.9 0.33 7.2E-06 47.6 11.2 103 94-205 68-177 (581)
197 PLN02209 serine carboxypeptida 94.7 0.31 6.8E-06 46.6 10.6 62 146-207 145-216 (437)
198 PLN02310 triacylglycerol lipas 94.7 0.12 2.5E-06 49.1 7.5 63 148-210 192-256 (405)
199 KOG2182 Hydrolytic enzymes of 94.5 0.57 1.2E-05 45.6 11.8 100 93-202 85-206 (514)
200 COG2382 Fes Enterochelin ester 94.4 0.13 2.8E-06 47.0 6.8 107 93-206 97-215 (299)
201 PF08237 PE-PPE: PE-PPE domain 94.1 0.46 1E-05 41.5 9.4 77 124-200 2-86 (225)
202 PLN03037 lipase class 3 family 94.1 0.16 3.5E-06 49.6 7.1 63 148-210 301-366 (525)
203 PLN02324 triacylglycerol lipas 94.0 0.23 5E-06 47.3 7.8 37 149-185 197-235 (415)
204 PF00450 Peptidase_S10: Serine 93.9 0.43 9.3E-06 43.7 9.4 63 145-207 113-185 (415)
205 PLN02934 triacylglycerol lipas 93.9 0.089 1.9E-06 51.2 5.0 36 149-184 305-340 (515)
206 PLN02802 triacylglycerol lipas 93.5 0.25 5.4E-06 48.1 7.3 61 150-210 313-378 (509)
207 PLN02847 triacylglycerol lipas 93.4 0.27 5.9E-06 48.8 7.5 37 149-185 235-271 (633)
208 PF04301 DUF452: Protein of un 93.3 0.2 4.4E-06 43.6 5.8 77 93-200 10-87 (213)
209 KOG4388 Hormone-sensitive lipa 92.7 0.37 8E-06 48.0 7.1 100 95-201 397-506 (880)
210 COG1505 Serine proteases of th 92.6 0.087 1.9E-06 52.2 2.7 107 93-205 420-537 (648)
211 PF07519 Tannase: Tannase and 92.6 1.4 3E-05 42.5 10.9 42 163-207 113-154 (474)
212 PLN02719 triacylglycerol lipas 92.5 0.42 9E-06 46.7 7.3 37 149-185 277-318 (518)
213 PLN03016 sinapoylglucose-malat 92.2 1 2.2E-05 43.1 9.4 59 148-206 145-213 (433)
214 PLN02753 triacylglycerol lipas 92.2 0.51 1.1E-05 46.3 7.3 37 149-185 291-332 (531)
215 KOG2029 Uncharacterized conser 91.2 0.59 1.3E-05 46.5 6.7 50 153-202 512-571 (697)
216 PLN02761 lipase class 3 family 91.2 0.73 1.6E-05 45.2 7.3 36 150-185 273-314 (527)
217 PF05705 DUF829: Eukaryotic pr 90.5 2.2 4.7E-05 36.5 9.0 103 97-204 2-113 (240)
218 KOG4569 Predicted lipase [Lipi 90.1 0.5 1.1E-05 43.5 5.0 67 149-215 155-226 (336)
219 PF00326 Peptidase_S9: Prolyl 89.9 1.5 3.3E-05 36.3 7.4 68 93-162 143-210 (213)
220 KOG4540 Putative lipase essent 89.8 0.58 1.3E-05 43.1 5.0 50 148-202 259-308 (425)
221 COG5153 CVT17 Putative lipase 89.8 0.58 1.3E-05 43.1 5.0 50 148-202 259-308 (425)
222 PF05576 Peptidase_S37: PS-10 89.5 1.2 2.7E-05 42.5 7.1 98 92-202 61-169 (448)
223 TIGR03712 acc_sec_asp2 accesso 88.5 4.3 9.3E-05 39.6 10.1 104 90-206 284-393 (511)
224 COG1448 TyrB Aspartate/tyrosin 87.9 3.7 7.9E-05 38.9 9.0 90 93-201 170-263 (396)
225 COG3673 Uncharacterized conser 87.5 6.8 0.00015 36.7 10.3 87 94-185 31-142 (423)
226 COG4947 Uncharacterized protei 86.2 3.4 7.3E-05 35.6 7.1 87 112-204 47-137 (227)
227 KOG1282 Serine carboxypeptidas 85.7 12 0.00025 36.3 11.3 60 147-206 147-216 (454)
228 PF10081 Abhydrolase_9: Alpha/ 85.2 11 0.00023 34.5 10.2 115 94-210 32-154 (289)
229 COG1506 DAP2 Dipeptidyl aminop 85.0 4 8.6E-05 40.5 8.1 67 93-161 550-616 (620)
230 COG0529 CysC Adenylylsulfate k 82.5 7.2 0.00016 33.6 7.5 39 92-131 20-58 (197)
231 COG2939 Carboxypeptidase C (ca 82.1 2.9 6.2E-05 40.8 5.6 61 147-207 175-240 (498)
232 KOG1551 Uncharacterized conser 81.5 7 0.00015 35.8 7.5 123 56-196 84-223 (371)
233 PF02230 Abhydrolase_2: Phosph 79.0 5.7 0.00012 33.4 5.9 59 94-156 155-213 (216)
234 KOG2521 Uncharacterized conser 78.3 12 0.00025 35.1 8.2 103 95-200 40-149 (350)
235 KOG4372 Predicted alpha/beta h 76.2 3.2 6.9E-05 39.5 3.8 84 93-182 79-167 (405)
236 PF09994 DUF2235: Uncharacteri 76.2 32 0.00069 30.6 10.1 38 148-185 74-112 (277)
237 KOG1202 Animal-type fatty acid 75.4 20 0.00044 39.2 9.6 90 93-200 2122-2216(2376)
238 PLN02213 sinapoylglucose-malat 75.0 13 0.00027 33.8 7.3 60 147-206 30-99 (319)
239 PF09949 DUF2183: Uncharacteri 74.7 16 0.00034 28.0 6.7 85 110-197 10-96 (100)
240 KOG2385 Uncharacterized conser 74.6 9.4 0.0002 37.8 6.6 41 162-202 444-486 (633)
241 KOG4389 Acetylcholinesterase/B 74.3 1.6 3.5E-05 42.7 1.4 106 95-204 136-256 (601)
242 COG3340 PepE Peptidase E [Amin 71.9 9 0.0002 33.7 5.3 40 93-132 31-70 (224)
243 COG0541 Ffh Signal recognition 71.3 23 0.0005 34.3 8.3 72 117-199 175-247 (451)
244 PF14606 Lipase_GDSL_3: GDSL-l 70.7 9.5 0.00021 32.3 5.1 63 102-173 40-102 (178)
245 cd01841 NnaC_like NnaC (CMP-Ne 69.3 43 0.00094 26.5 8.6 76 95-172 23-98 (174)
246 PRK11460 putative hydrolase; P 69.1 22 0.00048 30.4 7.2 61 93-160 147-207 (232)
247 PF09419 PGP_phosphatase: Mito 67.7 14 0.00031 31.0 5.5 54 120-176 36-89 (168)
248 cd01971 Nitrogenase_VnfN_like 67.0 55 0.0012 30.9 10.0 119 94-221 86-215 (427)
249 cd03818 GT1_ExpC_like This fam 65.4 39 0.00084 30.7 8.4 31 97-132 2-32 (396)
250 PRK11613 folP dihydropteroate 63.8 48 0.001 30.1 8.5 57 111-175 163-221 (282)
251 PF09370 TIM-br_sig_trns: TIM- 63.7 25 0.00054 31.8 6.6 97 115-218 161-265 (268)
252 TIGR02884 spore_pdaA delta-lac 63.6 9.3 0.0002 32.9 3.8 35 95-131 187-221 (224)
253 cd04740 DHOD_1B_like Dihydroor 63.3 94 0.002 27.5 10.3 98 93-199 89-186 (296)
254 cd01825 SGNH_hydrolase_peri1 S 61.4 45 0.00098 26.5 7.3 54 119-172 51-104 (189)
255 PRK07259 dihydroorotate dehydr 60.0 1.1E+02 0.0025 27.1 10.3 97 94-199 92-189 (301)
256 KOG2551 Phospholipase/carboxyh 60.0 63 0.0014 28.6 8.2 110 93-205 4-149 (230)
257 cd01822 Lysophospholipase_L1_l 59.8 83 0.0018 24.7 8.5 56 113-171 53-108 (177)
258 PF00448 SRP54: SRP54-type pro 59.5 70 0.0015 27.0 8.4 73 116-199 75-148 (196)
259 cd08205 RuBisCO_IV_RLP Ribulos 58.7 1.3E+02 0.0029 28.1 10.8 99 109-211 144-242 (367)
260 PRK06731 flhF flagellar biosyn 58.7 79 0.0017 28.3 9.0 65 123-199 153-219 (270)
261 PF01872 RibD_C: RibD C-termin 58.5 31 0.00067 28.6 6.0 47 149-204 121-168 (200)
262 cd02810 DHOD_DHPD_FMN Dihydroo 58.3 1E+02 0.0022 27.1 9.6 97 94-200 99-197 (289)
263 COG3562 KpsS Capsule polysacch 57.8 54 0.0012 31.0 7.8 73 95-172 14-90 (403)
264 cd01981 Pchlide_reductase_B Pc 57.8 1E+02 0.0022 29.0 9.9 119 94-221 85-221 (430)
265 cd04502 SGNH_hydrolase_like_7 57.5 68 0.0015 25.4 7.7 75 96-172 23-97 (171)
266 PTZ00445 p36-lilke protein; Pr 56.9 44 0.00095 29.4 6.7 91 110-202 28-142 (219)
267 COG2240 PdxK Pyridoxal/pyridox 56.6 87 0.0019 28.5 8.8 94 100-202 11-112 (281)
268 cd01972 Nitrogenase_VnfE_like 56.4 1.1E+02 0.0024 28.9 9.9 119 94-221 89-221 (426)
269 COG4822 CbiK Cobalamin biosynt 56.1 58 0.0013 29.0 7.3 59 96-170 140-199 (265)
270 TIGR01278 DPOR_BchB light-inde 55.0 1E+02 0.0023 29.9 9.7 118 94-220 85-216 (511)
271 TIGR02764 spore_ybaN_pdaB poly 54.8 13 0.00027 30.8 3.0 35 96-130 153-187 (191)
272 PRK06171 sorbitol-6-phosphate 54.2 86 0.0019 26.5 8.2 49 115-163 24-76 (266)
273 PRK05282 (alpha)-aspartyl dipe 54.1 52 0.0011 28.9 6.9 87 94-184 31-131 (233)
274 PRK02910 light-independent pro 53.1 1E+02 0.0022 30.1 9.4 117 94-220 85-216 (519)
275 TIGR00632 vsr DNA mismatch end 52.4 49 0.0011 26.2 5.8 16 115-130 98-113 (117)
276 cd01838 Isoamyl_acetate_hydrol 52.3 83 0.0018 25.0 7.4 75 98-173 35-116 (199)
277 PF00091 Tubulin: Tubulin/FtsZ 51.9 35 0.00076 29.0 5.4 53 148-202 107-166 (216)
278 PF01972 SDH_sah: Serine dehyd 51.3 77 0.0017 29.0 7.5 60 122-181 46-107 (285)
279 PF06441 EHN: Epoxide hydrolas 50.8 43 0.00093 26.1 5.2 25 83-107 77-105 (112)
280 cd01836 FeeA_FeeB_like SGNH_hy 49.9 76 0.0016 25.5 6.9 71 99-172 44-114 (191)
281 PF00148 Oxidored_nitro: Nitro 49.8 1.5E+02 0.0032 27.3 9.5 104 112-221 92-200 (398)
282 COG1087 GalE UDP-glucose 4-epi 49.5 1.8E+02 0.0038 27.2 9.6 91 96-200 2-117 (329)
283 cd03409 Chelatase_Class_II Cla 49.3 49 0.0011 24.0 5.2 28 96-123 2-29 (101)
284 cd01828 sialate_O-acetylestera 49.3 1.3E+02 0.0028 23.7 8.1 72 98-172 24-95 (169)
285 PRK12724 flagellar biosynthesi 49.1 1.3E+02 0.0028 29.1 9.1 77 115-199 290-367 (432)
286 PF03583 LIP: Secretory lipase 48.9 55 0.0012 29.3 6.3 69 93-167 218-287 (290)
287 TIGR02873 spore_ylxY probable 48.7 21 0.00044 31.9 3.5 32 96-130 232-263 (268)
288 COG0400 Predicted esterase [Ge 48.6 80 0.0017 27.2 7.0 59 93-159 145-203 (207)
289 cd04501 SGNH_hydrolase_like_4 48.4 1.3E+02 0.0028 23.9 8.0 70 98-171 34-103 (183)
290 KOG0780 Signal recognition par 48.2 81 0.0017 30.5 7.4 71 118-199 177-248 (483)
291 PF03283 PAE: Pectinacetyleste 48.2 32 0.0007 32.1 4.9 58 148-205 137-199 (361)
292 cd00316 Oxidoreductase_nitroge 47.8 1.8E+02 0.004 26.4 9.8 117 95-221 82-208 (399)
293 PRK05579 bifunctional phosphop 47.4 1.3E+02 0.0029 28.4 8.9 76 94-172 116-196 (399)
294 PF06792 UPF0261: Uncharacteri 47.2 2.6E+02 0.0057 26.8 10.8 98 95-198 2-125 (403)
295 cd01967 Nitrogenase_MoFe_alpha 47.2 1.9E+02 0.0042 26.7 9.9 118 94-220 87-214 (406)
296 COG5016 Pyruvate/oxaloacetate 47.0 78 0.0017 30.6 7.2 79 108-197 153-232 (472)
297 PRK05568 flavodoxin; Provision 46.9 70 0.0015 24.7 6.0 63 111-173 17-91 (142)
298 cd01965 Nitrogenase_MoFe_beta_ 46.8 2.5E+02 0.0055 26.3 11.4 102 111-221 98-229 (428)
299 PF08484 Methyltransf_14: C-me 46.0 54 0.0012 27.0 5.4 35 149-185 55-89 (160)
300 cd01714 ETF_beta The electron 45.3 1.8E+02 0.004 24.5 8.7 73 116-199 68-145 (202)
301 PF02310 B12-binding: B12 bind 45.2 49 0.0011 24.7 4.7 20 113-132 17-36 (121)
302 PRK14042 pyruvate carboxylase 44.9 1E+02 0.0022 30.9 8.0 81 107-198 150-231 (596)
303 PF02606 LpxK: Tetraacyldisacc 44.5 44 0.00096 30.7 5.1 44 93-141 33-77 (326)
304 PF14253 AbiH: Bacteriophage a 44.3 26 0.00057 30.3 3.5 22 163-184 233-254 (270)
305 TIGR00959 ffh signal recogniti 44.2 1.4E+02 0.003 28.6 8.6 72 118-200 176-248 (428)
306 TIGR00682 lpxK tetraacyldisacc 43.9 49 0.0011 30.3 5.3 43 94-141 27-70 (311)
307 PLN02834 3-dehydroquinate synt 43.6 3E+02 0.0065 26.3 12.6 44 112-160 115-158 (433)
308 cd01974 Nitrogenase_MoFe_beta 43.0 2.7E+02 0.0059 26.3 10.4 120 62-185 50-185 (435)
309 cd02067 B12-binding B12 bindin 42.6 62 0.0014 24.4 5.0 16 115-130 18-33 (119)
310 PRK12330 oxaloacetate decarbox 42.0 1.3E+02 0.0029 29.5 8.2 81 108-198 152-234 (499)
311 PRK10566 esterase; Provisional 42.0 1.2E+02 0.0027 25.2 7.2 59 95-160 187-247 (249)
312 KOG2112 Lysophospholipase [Lip 41.9 68 0.0015 27.9 5.5 94 60-157 101-203 (206)
313 PRK06523 short chain dehydroge 41.9 1.6E+02 0.0034 24.8 7.9 54 115-169 24-82 (260)
314 PRK12331 oxaloacetate decarbox 41.3 1.5E+02 0.0033 28.6 8.4 80 108-198 151-231 (448)
315 TIGR00521 coaBC_dfp phosphopan 41.0 1.8E+02 0.0039 27.5 8.7 90 95-186 113-225 (390)
316 PF12242 Eno-Rase_NADH_b: NAD( 40.9 68 0.0015 23.7 4.6 42 145-186 17-61 (78)
317 KOG1200 Mitochondrial/plastidi 40.8 96 0.0021 27.4 6.3 50 114-163 28-89 (256)
318 COG0552 FtsY Signal recognitio 40.8 1.5E+02 0.0033 27.8 7.9 74 119-199 216-292 (340)
319 PF01583 APS_kinase: Adenylyls 40.3 87 0.0019 25.8 5.8 38 94-132 1-38 (156)
320 PRK07313 phosphopantothenoylcy 40.0 69 0.0015 26.9 5.2 62 94-158 113-177 (182)
321 PRK14974 cell division protein 39.9 1.8E+02 0.0039 26.9 8.4 69 120-199 218-287 (336)
322 cd01833 XynB_like SGNH_hydrola 39.9 1.3E+02 0.0029 23.2 6.6 51 120-171 36-86 (157)
323 COG3967 DltE Short-chain dehyd 39.9 1E+02 0.0022 27.4 6.3 69 94-168 5-82 (245)
324 TIGR00128 fabD malonyl CoA-acy 39.6 39 0.00085 29.3 3.9 23 161-183 78-101 (290)
325 KOG1434 Meiotic recombination 39.6 28 0.00061 31.8 2.9 86 110-195 196-309 (335)
326 PRK08945 putative oxoacyl-(acy 39.5 2.2E+02 0.0048 23.6 10.9 32 94-131 12-43 (247)
327 cd01834 SGNH_hydrolase_like_2 39.3 92 0.002 24.6 5.7 29 143-171 83-111 (191)
328 KOG0635 Adenosine 5'-phosphosu 39.0 1.1E+02 0.0024 26.1 6.1 46 93-141 29-74 (207)
329 TIGR03131 malonate_mdcH malona 38.5 53 0.0011 28.9 4.5 23 161-183 72-94 (295)
330 COG1073 Hydrolases of the alph 38.3 58 0.0013 27.1 4.6 37 93-132 48-84 (299)
331 PRK12467 peptide synthase; Pro 38.2 2E+02 0.0043 35.2 10.1 99 94-199 3692-3791(3956)
332 PF00484 Pro_CA: Carbonic anhy 38.0 48 0.001 26.4 3.8 32 148-179 38-69 (153)
333 PRK01906 tetraacyldisaccharide 38.0 59 0.0013 30.2 4.9 43 94-141 55-98 (338)
334 PRK06398 aldose dehydrogenase; 37.9 1.7E+02 0.0036 24.8 7.5 54 115-169 21-77 (258)
335 PF01364 Peptidase_C25: Peptid 37.7 47 0.001 30.6 4.2 62 110-173 10-74 (378)
336 PRK10867 signal recognition pa 37.6 2.2E+02 0.0047 27.4 8.8 71 119-200 178-249 (433)
337 KOG2872 Uroporphyrinogen decar 37.5 1E+02 0.0022 28.7 6.1 70 94-173 252-336 (359)
338 cd00286 Tubulin_FtsZ Tubulin/F 37.4 1.1E+02 0.0023 27.7 6.5 30 147-176 71-100 (328)
339 TIGR03249 KdgD 5-dehydro-4-deo 37.4 2.6E+02 0.0057 24.9 8.9 88 108-203 23-110 (296)
340 PRK10824 glutaredoxin-4; Provi 37.3 2E+02 0.0043 22.5 7.3 80 93-186 14-93 (115)
341 PRK09282 pyruvate carboxylase 37.2 1.8E+02 0.004 29.1 8.4 80 108-198 151-231 (592)
342 PF06180 CbiK: Cobalt chelatas 37.2 83 0.0018 28.2 5.5 61 94-170 141-203 (262)
343 PF00698 Acyl_transf_1: Acyl t 37.1 32 0.00069 30.8 2.9 24 160-183 79-102 (318)
344 PF05673 DUF815: Protein of un 36.9 1.2E+02 0.0026 27.1 6.5 33 98-131 55-87 (249)
345 cd08587 PI-PLCXDc_like Catalyt 36.9 1.8E+02 0.004 25.7 7.8 41 94-134 79-119 (288)
346 PRK09767 hypothetical protein; 36.8 2.1E+02 0.0045 22.5 7.9 56 92-160 53-108 (117)
347 PF10566 Glyco_hydro_97: Glyco 36.4 1.2E+02 0.0027 27.3 6.6 64 110-175 31-97 (273)
348 PF04083 Abhydro_lipase: Parti 36.4 24 0.00053 24.7 1.6 14 93-106 42-55 (63)
349 cd00951 KDGDH 5-dehydro-4-deox 36.3 2.6E+02 0.0056 24.8 8.7 86 109-202 19-104 (289)
350 PF07519 Tannase: Tannase and 36.2 1E+02 0.0022 29.9 6.3 73 93-169 352-435 (474)
351 CHL00076 chlB photochlorophyll 35.8 4.2E+02 0.0091 25.9 10.6 118 94-220 85-221 (513)
352 cd01983 Fer4_NifH The Fer4_Nif 35.7 65 0.0014 22.0 3.9 33 98-131 2-34 (99)
353 smart00827 PKS_AT Acyl transfe 35.5 62 0.0013 28.2 4.5 23 161-183 78-100 (298)
354 PRK08226 short chain dehydroge 35.4 1.7E+02 0.0038 24.5 7.1 18 115-132 21-38 (263)
355 PRK00652 lpxK tetraacyldisacch 35.3 74 0.0016 29.3 5.0 37 95-131 49-86 (325)
356 cd08622 PI-PLCXDc_CG14945_like 35.2 1.3E+02 0.0027 27.0 6.4 45 95-140 68-112 (276)
357 cd00952 CHBPH_aldolase Trans-o 35.1 3E+02 0.0064 24.8 8.9 86 109-202 27-113 (309)
358 TIGR02816 pfaB_fam PfaB family 35.1 48 0.001 32.8 4.0 25 160-184 260-284 (538)
359 TIGR00365 monothiol glutaredox 35.0 1.9E+02 0.0041 21.4 7.7 79 93-185 11-89 (97)
360 PRK03170 dihydrodipicolinate s 34.9 3E+02 0.0065 24.3 8.8 86 109-202 20-106 (292)
361 cd01844 SGNH_hydrolase_like_6 34.8 2E+02 0.0044 22.9 7.2 26 146-171 75-100 (177)
362 KOG3035 Isoamyl acetate-hydrol 34.8 1E+02 0.0022 27.4 5.5 98 72-171 5-122 (245)
363 PRK05571 ribose-5-phosphate is 34.6 1.5E+02 0.0032 24.3 6.2 21 110-132 12-32 (148)
364 cd04888 ACT_PheB-BS C-terminal 34.4 76 0.0016 21.5 4.0 60 112-171 13-76 (76)
365 PRK08220 2,3-dihydroxybenzoate 34.1 1.8E+02 0.0039 24.1 7.0 48 115-163 23-75 (252)
366 PTZ00215 ribose 5-phosphate is 34.0 1.8E+02 0.004 23.9 6.7 21 110-132 14-36 (151)
367 cd01832 SGNH_hydrolase_like_1 34.0 1.8E+02 0.004 23.0 6.7 48 123-172 66-113 (185)
368 TIGR01108 oadA oxaloacetate de 33.9 2E+02 0.0043 28.8 8.1 80 108-198 146-226 (582)
369 PRK11889 flhF flagellar biosyn 33.7 2.8E+02 0.0062 26.9 8.8 66 123-199 319-385 (436)
370 PRK14041 oxaloacetate decarbox 33.7 2.1E+02 0.0046 27.8 8.1 80 108-198 150-230 (467)
371 PF03358 FMN_red: NADPH-depend 33.4 1.6E+02 0.0035 22.8 6.2 37 97-133 3-40 (152)
372 COG1856 Uncharacterized homolo 33.4 2.1E+02 0.0046 25.7 7.3 74 118-199 104-186 (275)
373 TIGR02069 cyanophycinase cyano 33.0 2.5E+02 0.0054 24.7 7.9 40 91-132 25-65 (250)
374 PRK10416 signal recognition pa 33.0 3.7E+02 0.0081 24.5 9.3 72 122-199 194-267 (318)
375 PRK11168 glpC sn-glycerol-3-ph 32.9 2.2E+02 0.0048 26.1 7.9 40 93-132 160-199 (396)
376 PRK03620 5-dehydro-4-deoxygluc 32.9 3.2E+02 0.0069 24.5 8.7 87 108-202 25-111 (303)
377 PF11009 DUF2847: Protein of u 32.8 96 0.0021 24.1 4.6 35 148-186 7-41 (105)
378 PRK07791 short chain dehydroge 32.8 2.2E+02 0.0049 24.7 7.6 19 115-133 21-39 (286)
379 PF14359 DUF4406: Domain of un 32.8 2.1E+02 0.0045 21.3 6.5 68 110-186 15-85 (92)
380 cd00883 beta_CA_cladeA Carboni 32.8 35 0.00076 28.6 2.3 30 150-179 66-95 (182)
381 PRK13230 nitrogenase reductase 32.8 55 0.0012 28.6 3.7 35 96-132 3-37 (279)
382 cd00408 DHDPS-like Dihydrodipi 32.5 3.3E+02 0.0072 23.7 8.6 86 109-202 16-102 (281)
383 cd01968 Nitrogenase_NifE_I Nit 32.4 4.2E+02 0.0091 24.7 10.2 118 94-220 86-212 (410)
384 KOG4306 Glycosylphosphatidylin 32.3 1.8E+02 0.0038 26.9 6.9 55 86-143 87-141 (306)
385 PRK14567 triosephosphate isome 32.2 2.5E+02 0.0054 25.1 7.7 83 126-214 160-246 (253)
386 TIGR01425 SRP54_euk signal rec 31.9 2.4E+02 0.0051 27.2 8.0 70 119-199 177-247 (429)
387 cd03466 Nitrogenase_NifN_2 Nit 31.8 3.8E+02 0.0082 25.3 9.4 109 63-175 50-166 (429)
388 cd03028 GRX_PICOT_like Glutare 31.8 2E+02 0.0043 20.8 7.7 79 93-185 7-85 (90)
389 PF08659 KR: KR domain; Inter 31.4 2.8E+02 0.006 22.5 7.5 90 96-203 2-92 (181)
390 PRK10115 protease 2; Provision 31.4 2.3E+02 0.0049 28.7 8.2 66 93-161 605-675 (686)
391 PF04084 ORC2: Origin recognit 31.2 2E+02 0.0043 26.5 7.1 72 98-178 57-150 (326)
392 PF01656 CbiA: CobQ/CobB/MinD/ 31.1 48 0.001 26.5 2.8 34 98-132 2-35 (195)
393 TIGR01037 pyrD_sub1_fam dihydr 30.9 3.1E+02 0.0068 24.2 8.3 63 94-162 91-156 (300)
394 PF03709 OKR_DC_1_N: Orn/Lys/A 30.6 1.5E+02 0.0032 22.7 5.4 82 111-199 4-96 (115)
395 PRK12581 oxaloacetate decarbox 30.5 2.8E+02 0.006 27.1 8.3 80 108-198 160-240 (468)
396 TIGR00737 nifR3_yhdG putative 30.5 4E+02 0.0087 23.9 9.9 66 93-163 62-131 (319)
397 PRK02842 light-independent pro 30.5 1.7E+02 0.0036 27.7 6.7 79 94-176 97-178 (427)
398 COG2205 KdpD Osmosensitive K+ 30.3 3.4E+02 0.0074 28.6 9.1 92 94-198 249-340 (890)
399 PF06564 YhjQ: YhjQ protein; 30.2 75 0.0016 28.2 4.1 37 97-133 3-39 (243)
400 PRK08993 2-deoxy-D-gluconate 3 30.0 2.2E+02 0.0048 23.9 6.9 48 115-163 25-84 (253)
401 COG0859 RfaF ADP-heptose:LPS h 30.0 1.5E+02 0.0032 26.8 6.1 37 94-130 175-214 (334)
402 cd02068 radical_SAM_B12_BD B12 29.9 1.1E+02 0.0023 23.5 4.5 47 114-171 28-75 (127)
403 PRK13982 bifunctional SbtC-lik 29.7 1.6E+02 0.0036 28.7 6.6 39 94-132 180-218 (475)
404 cd00229 SGNH_hydrolase SGNH_hy 29.6 2.4E+02 0.0051 20.9 7.5 55 119-173 60-115 (187)
405 COG0149 TpiA Triosephosphate i 29.4 4.2E+02 0.0091 23.8 10.1 93 115-213 147-245 (251)
406 PRK04435 hypothetical protein; 29.3 99 0.0021 25.0 4.4 76 93-172 67-146 (147)
407 TIGR03127 RuMP_HxlB 6-phospho 29.1 1.3E+02 0.0028 24.4 5.1 36 148-186 17-52 (179)
408 TIGR02113 coaC_strep phosphopa 29.0 1E+02 0.0023 25.7 4.6 39 94-132 112-150 (177)
409 TIGR02638 lactal_redase lactal 29.0 2.1E+02 0.0046 26.4 7.1 64 96-171 31-94 (379)
410 TIGR00689 rpiB_lacA_lacB sugar 29.0 2.7E+02 0.0058 22.7 6.8 21 110-132 10-30 (144)
411 PF05724 TPMT: Thiopurine S-me 28.9 83 0.0018 27.1 4.1 31 94-132 37-67 (218)
412 PRK06179 short chain dehydroge 28.8 3.5E+02 0.0077 22.7 8.0 49 115-163 19-72 (270)
413 PTZ00062 glutaredoxin; Provisi 28.5 3.2E+02 0.0069 23.5 7.6 80 93-186 112-191 (204)
414 PF13344 Hydrolase_6: Haloacid 28.5 1.4E+02 0.003 22.3 4.7 19 114-132 20-38 (101)
415 PF08643 DUF1776: Fungal famil 28.4 83 0.0018 28.8 4.1 33 94-131 3-35 (299)
416 cd01979 Pchlide_reductase_N Pc 28.4 1.6E+02 0.0034 27.5 6.1 78 94-175 87-166 (396)
417 PRK14566 triosephosphate isome 28.1 2.6E+02 0.0057 25.0 7.2 84 126-215 170-257 (260)
418 PLN02695 GDP-D-mannose-3',5'-e 28.1 3.3E+02 0.0071 24.9 8.1 34 94-133 21-54 (370)
419 cd04951 GT1_WbdM_like This fam 27.9 3.9E+02 0.0084 22.9 9.8 36 96-132 2-37 (360)
420 PRK07890 short chain dehydroge 27.9 3.2E+02 0.007 22.7 7.5 18 115-132 20-37 (258)
421 COG4425 Predicted membrane pro 27.8 1.8E+02 0.0039 28.7 6.4 42 164-206 396-438 (588)
422 PLN02884 6-phosphofructokinase 27.6 2.3E+02 0.0051 27.1 7.1 46 85-132 46-92 (411)
423 cd08194 Fe-ADH6 Iron-containin 27.6 2.5E+02 0.0055 25.9 7.3 64 96-171 25-88 (375)
424 cd01820 PAF_acetylesterase_lik 27.5 1.8E+02 0.0039 24.1 5.8 29 143-171 107-135 (214)
425 TIGR02990 ectoine_eutA ectoine 27.5 2.9E+02 0.0062 24.2 7.2 66 114-186 135-204 (239)
426 PF03193 DUF258: Protein of un 27.4 81 0.0018 26.2 3.6 43 115-174 3-45 (161)
427 PRK09860 putative alcohol dehy 27.4 2.7E+02 0.0058 25.9 7.4 64 96-171 33-96 (383)
428 PRK06114 short chain dehydroge 27.3 2.9E+02 0.0062 23.2 7.1 19 115-133 23-41 (254)
429 TIGR01119 lacB galactose-6-pho 27.3 2.6E+02 0.0057 23.6 6.7 19 110-128 12-30 (171)
430 PRK15454 ethanol dehydrogenase 27.2 2.7E+02 0.0058 26.1 7.4 65 95-171 50-114 (395)
431 PF03575 Peptidase_S51: Peptid 27.2 1.6E+02 0.0035 23.4 5.3 22 112-133 1-22 (154)
432 PF02502 LacAB_rpiB: Ribose/Ga 27.1 3E+02 0.0064 22.3 6.8 21 110-130 11-31 (140)
433 cd08192 Fe-ADH7 Iron-containin 27.1 2.6E+02 0.0057 25.6 7.3 64 96-171 26-89 (370)
434 TIGR01007 eps_fam capsular exo 27.0 1.3E+02 0.0028 24.7 4.8 38 95-132 17-54 (204)
435 cd08179 NADPH_BDH NADPH-depend 27.0 2.1E+02 0.0045 26.4 6.6 52 110-171 38-89 (375)
436 TIGR02867 spore_II_P stage II 26.9 3.1E+02 0.0067 23.5 7.2 18 114-131 37-54 (196)
437 PRK09288 purT phosphoribosylgl 26.9 2.7E+02 0.0057 25.4 7.3 73 94-175 12-86 (395)
438 TIGR00742 yjbN tRNA dihydrouri 26.5 2.6E+02 0.0056 25.5 7.1 63 93-161 54-121 (318)
439 PRK12745 3-ketoacyl-(acyl-carr 26.5 3E+02 0.0066 22.8 7.1 55 115-169 17-85 (256)
440 cd06059 Tubulin The tubulin su 26.4 2.1E+02 0.0046 26.6 6.6 33 145-177 69-101 (382)
441 KOG1610 Corticosteroid 11-beta 26.4 2.1E+02 0.0046 26.6 6.3 68 94-166 28-106 (322)
442 PRK13256 thiopurine S-methyltr 26.3 64 0.0014 28.2 2.9 30 96-133 45-74 (226)
443 cd08189 Fe-ADH5 Iron-containin 26.3 2.7E+02 0.0058 25.7 7.2 64 96-171 28-91 (374)
444 cd03146 GAT1_Peptidase_E Type 26.3 3.2E+02 0.0069 23.1 7.2 84 93-182 30-130 (212)
445 PRK14040 oxaloacetate decarbox 26.2 3.4E+02 0.0073 27.3 8.2 80 108-198 152-232 (593)
446 TIGR03379 glycerol3P_GlpC glyc 26.2 4.7E+02 0.01 24.1 8.8 37 95-131 162-198 (397)
447 PF00004 AAA: ATPase family as 26.1 1.9E+02 0.0042 21.1 5.3 56 98-161 1-56 (132)
448 cd00382 beta_CA Carbonic anhyd 26.1 68 0.0015 24.9 2.8 28 150-177 44-71 (119)
449 TIGR00064 ftsY signal recognit 26.0 4.3E+02 0.0094 23.4 8.3 74 121-200 151-226 (272)
450 PF00456 Transketolase_N: Tran 26.0 2.2E+02 0.0048 26.3 6.5 48 113-174 195-243 (332)
451 PRK08622 galactose-6-phosphate 25.6 3.1E+02 0.0067 23.2 6.8 21 110-132 12-32 (171)
452 KOG1209 1-Acyl dihydroxyaceton 25.6 4.7E+02 0.01 23.6 8.1 89 94-186 6-130 (289)
453 PRK12481 2-deoxy-D-gluconate 3 25.5 2.7E+02 0.0059 23.4 6.7 49 115-163 23-82 (251)
454 TIGR03325 BphB_TodD cis-2,3-di 25.4 3.2E+02 0.0068 23.0 7.1 32 95-132 6-37 (262)
455 TIGR03623 probable DNA repair 25.3 2.4E+02 0.0053 29.2 7.3 82 93-177 160-245 (874)
456 KOG2380 Prephenate dehydrogena 25.3 75 0.0016 30.3 3.3 32 95-132 52-83 (480)
457 PRK10964 ADP-heptose:LPS hepto 25.3 1.3E+02 0.0028 26.7 4.8 36 94-129 178-215 (322)
458 TIGR03162 ribazole_cobC alpha- 25.3 2.8E+02 0.0061 22.0 6.4 41 143-183 116-156 (177)
459 PF04244 DPRP: Deoxyribodipyri 25.2 1.1E+02 0.0024 26.6 4.2 21 112-132 50-70 (224)
460 PLN02735 carbamoyl-phosphate s 25.0 4.4E+02 0.0095 28.5 9.3 64 115-185 599-668 (1102)
461 cd08178 AAD_C C-terminal alcoh 24.9 2.7E+02 0.0058 26.0 7.0 64 96-171 23-86 (398)
462 PRK05625 5-amino-6-(5-phosphor 24.9 1.5E+02 0.0033 24.9 5.0 63 117-202 109-172 (217)
463 PRK06259 succinate dehydrogena 24.8 4.1E+02 0.0089 25.3 8.4 38 93-130 259-296 (486)
464 PLN02417 dihydrodipicolinate s 24.8 4.9E+02 0.011 23.0 8.8 86 109-202 20-106 (280)
465 PF06180 CbiK: Cobalt chelatas 24.7 62 0.0014 29.0 2.6 29 146-174 119-151 (262)
466 COG0331 FabD (acyl-carrier-pro 24.7 86 0.0019 28.7 3.5 22 163-184 83-104 (310)
467 PF04016 DUF364: Domain of unk 24.7 53 0.0012 26.6 2.0 20 115-134 22-41 (147)
468 COG3727 Vsr DNA G:T-mismatch r 24.6 1.2E+02 0.0027 24.8 4.0 14 117-130 101-114 (150)
469 PRK10916 ADP-heptose:LPS hepto 24.5 4.1E+02 0.0089 23.8 8.0 38 93-130 179-219 (348)
470 COG3494 Uncharacterized protei 24.4 1.8E+02 0.004 26.4 5.4 56 115-171 19-76 (279)
471 PRK08265 short chain dehydroge 24.4 2.9E+02 0.0062 23.4 6.6 49 115-163 21-79 (261)
472 PRK02399 hypothetical protein; 24.3 6.1E+02 0.013 24.4 9.2 42 154-198 86-127 (406)
473 TIGR01235 pyruv_carbox pyruvat 24.2 3E+02 0.0064 29.9 7.9 93 95-198 670-766 (1143)
474 PRK13255 thiopurine S-methyltr 24.2 92 0.002 26.7 3.5 17 117-133 52-68 (218)
475 cd02801 DUS_like_FMN Dihydrour 24.1 4.2E+02 0.0091 22.0 9.6 97 93-199 54-158 (231)
476 PRK15219 carbonic anhydrase; P 24.1 60 0.0013 28.8 2.3 28 150-177 128-155 (245)
477 cd02042 ParA ParA and ParB of 24.1 1.2E+02 0.0025 22.0 3.6 21 112-132 16-36 (104)
478 TIGR00227 ribD_Cterm riboflavi 24.1 1.7E+02 0.0037 24.4 5.0 46 150-204 129-175 (216)
479 PRK10279 hypothetical protein; 24.0 1.1E+02 0.0025 27.7 4.2 31 154-185 23-53 (300)
480 PF03205 MobB: Molybdopterin g 24.0 1.6E+02 0.0036 23.3 4.7 33 97-130 2-34 (140)
481 TIGR01120 rpiB ribose 5-phosph 24.0 3.6E+02 0.0079 21.9 6.7 21 110-132 11-31 (143)
482 KOG1283 Serine carboxypeptidas 23.9 1.5E+02 0.0033 28.0 4.9 63 145-207 99-170 (414)
483 cd06548 GH18_chitinase The GH1 23.9 5.3E+02 0.011 23.1 9.7 66 95-162 86-165 (322)
484 PF03808 Glyco_tran_WecB: Glyc 23.9 4E+02 0.0087 21.7 9.6 89 94-204 48-138 (172)
485 PLN02496 probable phosphopanto 23.8 2.4E+02 0.0053 24.5 6.0 39 94-132 132-170 (209)
486 PRK10624 L-1,2-propanediol oxi 23.8 3E+02 0.0064 25.5 7.0 64 96-171 32-95 (382)
487 PF03808 Glyco_tran_WecB: Glyc 23.8 2.7E+02 0.0059 22.7 6.1 50 110-175 34-83 (172)
488 PF02492 cobW: CobW/HypB/UreG, 23.8 1.3E+02 0.0029 24.5 4.2 33 96-130 1-33 (178)
489 cd02940 DHPD_FMN Dihydropyrimi 23.7 5.3E+02 0.011 23.0 10.3 99 94-201 100-202 (299)
490 cd00950 DHDPS Dihydrodipicolin 23.7 5E+02 0.011 22.7 8.7 86 109-202 19-105 (284)
491 PRK03094 hypothetical protein; 23.6 77 0.0017 23.5 2.4 18 114-131 11-28 (80)
492 cd05005 SIS_PHI Hexulose-6-pho 23.6 1.8E+02 0.004 23.5 5.1 36 148-186 20-55 (179)
493 PRK12384 sorbitol-6-phosphate 23.5 4.3E+02 0.0094 22.0 8.0 18 115-132 17-34 (259)
494 PRK13512 coenzyme A disulfide 23.5 2.3E+02 0.005 26.5 6.3 35 148-186 133-167 (438)
495 COG4553 DepA Poly-beta-hydroxy 23.4 6.3E+02 0.014 23.8 10.2 105 93-204 102-210 (415)
496 cd08193 HVD 5-hydroxyvalerate 23.4 3.5E+02 0.0076 24.9 7.4 64 96-171 28-91 (376)
497 PF00300 His_Phos_1: Histidine 23.4 86 0.0019 23.9 2.9 32 143-174 121-153 (158)
498 PRK12744 short chain dehydroge 23.4 3.2E+02 0.0068 22.9 6.7 19 115-133 23-41 (257)
499 TIGR01118 lacA galactose-6-pho 23.3 2.7E+02 0.0058 22.7 5.8 21 110-132 12-32 (141)
500 cd00598 GH18_chitinase-like Th 23.3 4E+02 0.0086 21.6 7.1 66 94-164 65-139 (210)
No 1
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.96 E-value=3.2e-29 Score=225.37 Aligned_cols=144 Identities=42% Similarity=0.727 Sum_probs=109.2
Q ss_pred ccccccEEEEeCCCCceEEEeeCC--CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhh
Q 027344 69 KNQFRGVLFKYGPKPVQVAFKTGD--YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQ 146 (224)
Q Consensus 69 ~~~~~g~l~~y~~~~~~v~y~~g~--~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~ 146 (224)
..+++|++|.|.++...+.|.... .+.+||||+|++++++..+|+..|+++|.+.+|+|+.+.++|+|.|||.+++++
T Consensus 6 ~~~~~G~lh~Y~~~~~afe~~~~~~~~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~~ 85 (303)
T PF08538_consen 6 VPPQQGILHHYTPKLVAFEFTSSSSSAPNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLDR 85 (303)
T ss_dssp ---EEEEEEEECCTTEEEEEEEE-TTSSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HHH
T ss_pred CCCCceEEEEECCCCeEEEecCCCCCCCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhhh
Confidence 346779999999998888887654 567999999999999999999999999998899999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhC----CCCcEEEEEEchhHHHHHHHHHHhcc--cccccceEEEEccccChHHHHHHH
Q 027344 147 DAMEIDQLISYLINKD----NSEGVVLLGHSTGCQDIVHYMRANAA--CSRAVRAAIFQVLTIDFEIFVVLL 212 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~~----~~~~VvLvGHSmGG~val~ya~~~~~--~~~~V~gvIL~aPv~D~e~~~~~~ 212 (224)
|++||+++|+||+... +.++|||+|||+|||.+++|+.+... ...+|+|+||+|||+|||+.....
T Consensus 86 D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~ 157 (303)
T PF08538_consen 86 DVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFL 157 (303)
T ss_dssp HHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSH
T ss_pred HHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcc
Confidence 9999999999999863 56899999999999999999998731 247899999999999999876643
No 2
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.95 E-value=3.8e-28 Score=210.03 Aligned_cols=149 Identities=42% Similarity=0.629 Sum_probs=136.7
Q ss_pred CCccccccccccEEEEeCCCCceEEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC
Q 027344 63 GPVVMGKNQFRGVLFKYGPKPVQVAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS 142 (224)
Q Consensus 63 ~p~~m~~~~~~g~l~~y~~~~~~v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S 142 (224)
+|.-|.+++++|++|.|+++..+++|.++..+..||||+|+++++....|...|+.+|.+.+|.++++.++++|.|||.+
T Consensus 5 hpGI~~~~~~rgvlF~y~~Ks~~va~~~gv~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~ 84 (299)
T KOG4840|consen 5 HPGIMSREELRGVLFVYDSKSSLVAYSNGVESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF 84 (299)
T ss_pred ccccccchheeeeEEEecCccceeeeccCceEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc
Confidence 67799999999999999999999999998878899999999999988999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHHHHHHH
Q 027344 143 SLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLL 212 (224)
Q Consensus 143 sl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~ 212 (224)
++.+|++||+.+++++.......+|||+|||+|||.+++|+.. .+++..|++.||+|||+|+|+....+
T Consensus 85 slk~D~edl~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYlTn-t~~~r~iraaIlqApVSDrEYqf~~~ 153 (299)
T KOG4840|consen 85 SLKDDVEDLKCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYLTN-TTKDRKIRAAILQAPVSDREYQFLEE 153 (299)
T ss_pred cccccHHHHHHHHHHhhccCcccceEEEecCccchHHHHHHHh-ccchHHHHHHHHhCccchhhhhhccc
Confidence 9999999999999999865445689999999999999999944 36789999999999999999655444
No 3
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.80 E-value=1.1e-18 Score=156.98 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=99.2
Q ss_pred CCCCceEEEeeCC----CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC---------hhh
Q 027344 80 GPKPVQVAFKTGD----YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS---------LQQ 146 (224)
Q Consensus 80 ~~~~~~v~y~~g~----~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss---------l~~ 146 (224)
..++..++|.... .+.+||++||++| +..+|. .+++.|.++||.|+++|+| |||.|. +.+
T Consensus 16 ~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~E--h~~ry~-~la~~l~~~G~~V~~~D~R----GhG~S~r~~rg~~~~f~~ 88 (298)
T COG2267 16 GADGTRLRYRTWAAPEPPKGVVVLVHGLGE--HSGRYE-ELADDLAARGFDVYALDLR----GHGRSPRGQRGHVDSFAD 88 (298)
T ss_pred cCCCceEEEEeecCCCCCCcEEEEecCchH--HHHHHH-HHHHHHHhCCCEEEEecCC----CCCCCCCCCcCCchhHHH
Confidence 3345567777632 2379999999998 556675 4999999999999999996 777774 677
Q ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 147 DAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
+++|++++++.+.++.+..+++|+||||||.|++.|+.++ +.+|+++||.+|......
T Consensus 89 ~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~---~~~i~~~vLssP~~~l~~ 146 (298)
T COG2267 89 YVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARY---PPRIDGLVLSSPALGLGG 146 (298)
T ss_pred HHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhC---CccccEEEEECccccCCh
Confidence 8999999999998767788999999999999999999998 799999999999988774
No 4
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.77 E-value=9e-18 Score=149.99 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=89.9
Q ss_pred CCCceEEEee----C--CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhh
Q 027344 81 PKPVQVAFKT----G--DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQ 146 (224)
Q Consensus 81 ~~~~~v~y~~----g--~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~ 146 (224)
.++.+++|.. + ..+++|||+||++++. . .++..+++.|.++||+|+++|+| |||.+. ++.
T Consensus 40 ~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~-~-~~~~~~~~~L~~~Gy~V~~~D~r----GhG~S~~~~~~~~~~~~ 113 (330)
T PLN02298 40 PRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDI-S-WTFQSTAIFLAQMGFACFALDLE----GHGRSEGLRAYVPNVDL 113 (330)
T ss_pred CCCCEEEEEEEecCCCCCCceEEEEEcCCCCCc-c-eehhHHHHHHHhCCCEEEEecCC----CCCCCCCccccCCCHHH
Confidence 3666788864 1 2467899999998643 2 23455788888899999999996 677653 445
Q ss_pred hHHHHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 147 DAMEIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
.++|+.++++++..+ .+..+++|+||||||.+++.++.++ +++|+++||++|..+
T Consensus 114 ~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~---p~~v~~lvl~~~~~~ 170 (330)
T PLN02298 114 VVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLAN---PEGFDGAVLVAPMCK 170 (330)
T ss_pred HHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcC---cccceeEEEeccccc
Confidence 689999999999753 3345799999999999999999887 889999999999754
No 5
>PHA02857 monoglyceride lipase; Provisional
Probab=99.76 E-value=1.2e-17 Score=144.54 Aligned_cols=117 Identities=17% Similarity=0.085 Sum_probs=89.5
Q ss_pred eCCCCceEEEee---C-CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhh
Q 027344 79 YGPKPVQVAFKT---G-DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQ 146 (224)
Q Consensus 79 y~~~~~~v~y~~---g-~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~ 146 (224)
+.+++..++|.. + +.+++|+|+||++++. .++..+++.|.++||+|+++|+| |||.+. +.+
T Consensus 6 ~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~---~~~~~~~~~l~~~g~~via~D~~----G~G~S~~~~~~~~~~~~ 78 (276)
T PHA02857 6 FNLDNDYIYCKYWKPITYPKALVFISHGAGEHS---GRYEELAENISSLGILVFSHDHI----GHGRSNGEKMMIDDFGV 78 (276)
T ss_pred ecCCCCEEEEEeccCCCCCCEEEEEeCCCcccc---chHHHHHHHHHhCCCEEEEccCC----CCCCCCCccCCcCCHHH
Confidence 334444566553 2 3466777779998643 45677899999899999999996 777653 334
Q ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 147 DAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
.++|+.+.++++++..+.++++|+||||||.+++.++.++ +++|+++||++|..+.
T Consensus 79 ~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~---p~~i~~lil~~p~~~~ 134 (276)
T PHA02857 79 YVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKN---PNLFTAMILMSPLVNA 134 (276)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhC---ccccceEEEecccccc
Confidence 5677777777776656667899999999999999999887 8899999999997653
No 6
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.76 E-value=2.4e-17 Score=145.33 Aligned_cols=118 Identities=9% Similarity=0.068 Sum_probs=91.0
Q ss_pred ccccEEEEeCC---CCceEEEeeCC--CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-
Q 027344 71 QFRGVLFKYGP---KPVQVAFKTGD--YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL- 144 (224)
Q Consensus 71 ~~~g~l~~y~~---~~~~v~y~~g~--~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl- 144 (224)
++.++.++.+. ...+++|...+ .+++||||||++++. ..|..+++.|.++||+|+++|+| |||.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~---~~w~~~~~~L~~~gy~vi~~Dl~----G~G~S~~~ 90 (302)
T PRK00870 18 PFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWS---YLYRKMIPILAAAGHRVIAPDLI----GFGRSDKP 90 (302)
T ss_pred CCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCch---hhHHHHHHHHHhCCCEEEEECCC----CCCCCCCC
Confidence 45777787776 22468998754 368999999997543 35567889998789999999995 8887642
Q ss_pred --------hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 145 --------QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 145 --------~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++.++|+.+++++ .+.++++|+||||||.+++.++.++ +++|+++|+++|.
T Consensus 91 ~~~~~~~~~~~a~~l~~~l~~----l~~~~v~lvGhS~Gg~ia~~~a~~~---p~~v~~lvl~~~~ 149 (302)
T PRK00870 91 TRREDYTYARHVEWMRSWFEQ----LDLTDVTLVCQDWGGLIGLRLAAEH---PDRFARLVVANTG 149 (302)
T ss_pred CCcccCCHHHHHHHHHHHHHH----cCCCCEEEEEEChHHHHHHHHHHhC---hhheeEEEEeCCC
Confidence 3345555555544 4567899999999999999999987 8999999999874
No 7
>PRK10749 lysophospholipase L2; Provisional
Probab=99.75 E-value=2.4e-17 Score=148.44 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=90.7
Q ss_pred CCCceEEEeeC---CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-------------Ch
Q 027344 81 PKPVQVAFKTG---DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-------------SL 144 (224)
Q Consensus 81 ~~~~~v~y~~g---~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-------------sl 144 (224)
.++..++|... +.+++|||+||++++. . .+..++..|.++||+|+++|+| |||.+ ++
T Consensus 38 ~~g~~l~~~~~~~~~~~~~vll~HG~~~~~--~-~y~~~~~~l~~~g~~v~~~D~~----G~G~S~~~~~~~~~~~~~~~ 110 (330)
T PRK10749 38 VDDIPIRFVRFRAPHHDRVVVICPGRIESY--V-KYAELAYDLFHLGYDVLIIDHR----GQGRSGRLLDDPHRGHVERF 110 (330)
T ss_pred CCCCEEEEEEccCCCCCcEEEEECCccchH--H-HHHHHHHHHHHCCCeEEEEcCC----CCCCCCCCCCCCCcCccccH
Confidence 34556888763 3567999999998743 2 3456888888899999999996 66654 24
Q ss_pred hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 145 QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
++.++|+.++++++.+..+..+++|+||||||.+++.|+.++ +++|+++||++|..
T Consensus 111 ~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~---p~~v~~lvl~~p~~ 166 (330)
T PRK10749 111 NDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRH---PGVFDAIALCAPMF 166 (330)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhC---CCCcceEEEECchh
Confidence 566888999998876655678999999999999999999987 89999999999974
No 8
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.75 E-value=2.1e-17 Score=149.55 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=90.0
Q ss_pred CCCCceEEEeeC-----CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------Chhh
Q 027344 80 GPKPVQVAFKTG-----DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------SLQQ 146 (224)
Q Consensus 80 ~~~~~~v~y~~g-----~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------sl~~ 146 (224)
..++.+++|... ..+++|||+||++++. ..|+..+++.|.++||+|+++|+| |||.+ ++++
T Consensus 68 ~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~D~~----G~G~S~~~~~~~~~~~~ 141 (349)
T PLN02385 68 NSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTC--TFFFEGIARKIASSGYGVFAMDYP----GFGLSEGLHGYIPSFDD 141 (349)
T ss_pred cCCCCEEEEEEEecCCCCCCeEEEEECCCCCcc--chHHHHHHHHHHhCCCEEEEecCC----CCCCCCCCCCCcCCHHH
Confidence 345566766541 3467899999998743 235677888998889999999996 67655 3455
Q ss_pred hHHHHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 147 DAMEIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
.++|+.++++++..+ .+..+++|+||||||.+++.++.++ +++|+++||++|...
T Consensus 142 ~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~---p~~v~glVLi~p~~~ 198 (349)
T PLN02385 142 LVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQ---PNAWDGAILVAPMCK 198 (349)
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhC---cchhhheeEeccccc
Confidence 678888888877642 3445899999999999999999987 899999999998643
No 9
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.74 E-value=4.6e-17 Score=142.57 Aligned_cols=116 Identities=11% Similarity=0.186 Sum_probs=88.0
Q ss_pred ccccEEEEeCCCCceEEEeeCC-CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-----
Q 027344 71 QFRGVLFKYGPKPVQVAFKTGD-YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL----- 144 (224)
Q Consensus 71 ~~~g~l~~y~~~~~~v~y~~g~-~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl----- 144 (224)
++....+.++.. +++|...+ .+++|||+||++.+. ..|..+++.|.+ .|+|+++|++ |||.|..
T Consensus 7 ~~~~~~~~~~~~--~i~y~~~G~~~~~vlllHG~~~~~---~~w~~~~~~L~~-~~~vi~~Dlp----G~G~S~~~~~~~ 76 (294)
T PLN02824 7 QVETRTWRWKGY--NIRYQRAGTSGPALVLVHGFGGNA---DHWRKNTPVLAK-SHRVYAIDLL----GYGYSDKPNPRS 76 (294)
T ss_pred CCCCceEEEcCe--EEEEEEcCCCCCeEEEECCCCCCh---hHHHHHHHHHHh-CCeEEEEcCC----CCCCCCCCcccc
Confidence 455666666544 67888744 568999999998754 345667888875 4799999995 8887642
Q ss_pred ---------hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 145 ---------QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 145 ---------~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
++.++|+.++++.+ +.++++|+||||||.+++.|+.++ +++|+++|+++|..
T Consensus 77 ~~~~~~~~~~~~a~~l~~~l~~l----~~~~~~lvGhS~Gg~va~~~a~~~---p~~v~~lili~~~~ 137 (294)
T PLN02824 77 APPNSFYTFETWGEQLNDFCSDV----VGDPAFVICNSVGGVVGLQAAVDA---PELVRGVMLINISL 137 (294)
T ss_pred ccccccCCHHHHHHHHHHHHHHh----cCCCeEEEEeCHHHHHHHHHHHhC---hhheeEEEEECCCc
Confidence 23355555555544 468999999999999999999997 89999999998753
No 10
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.72 E-value=1e-16 Score=140.41 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=85.0
Q ss_pred CCceEEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-------hhhhHHHHHHH
Q 027344 82 KPVQVAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-------LQQDAMEIDQL 154 (224)
Q Consensus 82 ~~~~v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-------l~~~~eDL~~l 154 (224)
++.+++|...+.+++||||||++.+. ..|..+++.|.++ |+|+++|+| |||.|+ +...++|+.++
T Consensus 15 ~g~~i~y~~~G~g~~vvllHG~~~~~---~~w~~~~~~L~~~-~~via~D~~----G~G~S~~~~~~~~~~~~a~dl~~l 86 (295)
T PRK03592 15 LGSRMAYIETGEGDPIVFLHGNPTSS---YLWRNIIPHLAGL-GRCLAPDLI----GMGASDKPDIDYTFADHARYLDAW 86 (295)
T ss_pred CCEEEEEEEeCCCCEEEEECCCCCCH---HHHHHHHHHHhhC-CEEEEEcCC----CCCCCCCCCCCCCHHHHHHHHHHH
Confidence 44568888866778999999998643 4556788888866 599999995 888774 33446666666
Q ss_pred HHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 155 ISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 155 Ie~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++++ +.++++|+||||||.+++.++.++ +++|+++|+++|+
T Consensus 87 l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~---p~~v~~lil~~~~ 127 (295)
T PRK03592 87 FDAL----GLDDVVLVGHDWGSALGFDWAARH---PDRVRGIAFMEAI 127 (295)
T ss_pred HHHh----CCCCeEEEEECHHHHHHHHHHHhC---hhheeEEEEECCC
Confidence 6655 467899999999999999999998 9999999999974
No 11
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.72 E-value=1.2e-16 Score=145.95 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCCCCCccccccccccEEEEeCCCCc-eEEEeeCCCC------ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 59 QDMGGPVVMGKNQFRGVLFKYGPKPV-QVAFKTGDYQ------QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 59 ~~~~~p~~m~~~~~~g~l~~y~~~~~-~v~y~~g~~~------~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
...++-+.+.-++++.+..+|.-.+. +++|...+.+ ++|||+||++.+. ..|..+++.|. ++|+|+++|
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~---~~w~~~~~~L~-~~~~via~D 121 (360)
T PLN02679 46 VSSSGGVEAELEEIYERCKKWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASI---PHWRRNIGVLA-KNYTVYAID 121 (360)
T ss_pred CCCCccccccHHHhhccCceEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCH---HHHHHHHHHHh-cCCEEEEEC
Confidence 34445566666677666555544444 7889875443 8999999998754 34566778887 489999999
Q ss_pred ccCCCCCCCCCCh--------hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 132 MTSSYTGYGTSSL--------QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 132 lrss~~G~G~Ssl--------~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++ |||.++. ++.++|+.++++ +.+.++++|+||||||.+++.++..+ .+++|+++||++|.
T Consensus 122 l~----G~G~S~~~~~~~~~~~~~a~~l~~~l~----~l~~~~~~lvGhS~Gg~ia~~~a~~~--~P~rV~~LVLi~~~ 190 (360)
T PLN02679 122 LL----GFGASDKPPGFSYTMETWAELILDFLE----EVVQKPTVLIGNSVGSLACVIAASES--TRDLVRGLVLLNCA 190 (360)
T ss_pred CC----CCCCCCCCCCccccHHHHHHHHHHHHH----HhcCCCeEEEEECHHHHHHHHHHHhc--ChhhcCEEEEECCc
Confidence 95 8887643 223444444444 34567999999999999999988642 28899999999875
No 12
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.71 E-value=1.4e-16 Score=137.21 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=85.8
Q ss_pred cccEEEEeCC---CCceEEEeeCCCCceEEEECCCCCCCC-ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChh--
Q 027344 72 FRGVLFKYGP---KPVQVAFKTGDYQQQVIFIGGLTDGFF-ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQ-- 145 (224)
Q Consensus 72 ~~g~l~~y~~---~~~~v~y~~g~~~~~IVfVHGlg~~~~-~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~-- 145 (224)
..++...... .+..++|...+.+++|||+||++.+.. +..+++ .+..|.++||+|+++|+| |||.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~ivllHG~~~~~~~~~~~~~-~~~~l~~~~~~vi~~D~~----G~G~S~~~~~ 79 (282)
T TIGR03343 5 STSKFVKINEKGLSNFRIHYNEAGNGEAVIMLHGGGPGAGGWSNYYR-NIGPFVDAGYRVILKDSP----GFNKSDAVVM 79 (282)
T ss_pred CcceEEEcccccccceeEEEEecCCCCeEEEECCCCCchhhHHHHHH-HHHHHHhCCCEEEEECCC----CCCCCCCCcC
Confidence 3444555533 235688887666789999999976432 223443 344565679999999985 88887532
Q ss_pred ------hhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 146 ------QDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 146 ------~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
..++|+.++++.+ +.++++|+||||||.++++++.++ +++|+++|+++|.
T Consensus 80 ~~~~~~~~~~~l~~~l~~l----~~~~~~lvG~S~Gg~ia~~~a~~~---p~~v~~lvl~~~~ 135 (282)
T TIGR03343 80 DEQRGLVNARAVKGLMDAL----DIEKAHLVGNSMGGATALNFALEY---PDRIGKLILMGPG 135 (282)
T ss_pred cccccchhHHHHHHHHHHc----CCCCeeEEEECchHHHHHHHHHhC---hHhhceEEEECCC
Confidence 1245555555544 577999999999999999999987 8999999999875
No 13
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.71 E-value=1e-16 Score=139.40 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=82.1
Q ss_pred CCceEEEee--CC-CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-------hhhHHHH
Q 027344 82 KPVQVAFKT--GD-YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-------QQDAMEI 151 (224)
Q Consensus 82 ~~~~v~y~~--g~-~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-------~~~~eDL 151 (224)
+..+++|.. ++ .+++|||+||++++. ..|..+++.|. ++|+|+++|++ |||.+.. +..++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~plvllHG~~~~~---~~w~~~~~~L~-~~~~vi~~Dl~----G~G~S~~~~~~~~~~~~~~~~ 81 (276)
T TIGR02240 10 DGQSIRTAVRPGKEGLTPLLIFNGIGANL---ELVFPFIEALD-PDLEVIAFDVP----GVGGSSTPRHPYRFPGLAKLA 81 (276)
T ss_pred CCcEEEEEEecCCCCCCcEEEEeCCCcch---HHHHHHHHHhc-cCceEEEECCC----CCCCCCCCCCcCcHHHHHHHH
Confidence 344677754 23 347999999998754 35567888886 47999999995 8888642 3445555
Q ss_pred HHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 152 DQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 152 ~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
.++++++ +.++++|+||||||.+++.++.++ +++|+++||++|..
T Consensus 82 ~~~i~~l----~~~~~~LvG~S~GG~va~~~a~~~---p~~v~~lvl~~~~~ 126 (276)
T TIGR02240 82 ARMLDYL----DYGQVNAIGVSWGGALAQQFAHDY---PERCKKLILAATAA 126 (276)
T ss_pred HHHHHHh----CcCceEEEEECHHHHHHHHHHHHC---HHHhhheEEeccCC
Confidence 5555554 467899999999999999999997 89999999999765
No 14
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.71 E-value=1.9e-16 Score=147.56 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=95.3
Q ss_pred cEEEEeCCCCceEEEee-----CCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-----
Q 027344 74 GVLFKYGPKPVQVAFKT-----GDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS----- 143 (224)
Q Consensus 74 g~l~~y~~~~~~v~y~~-----g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss----- 143 (224)
-++..|++.+..++|.. ++.+++|||+||++++. . .+..+++.|.++||+|+++|+| |||.+.
T Consensus 111 ~~~~~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~--~-~~~~~a~~L~~~Gy~V~~~D~r----GhG~S~~~~~~ 183 (395)
T PLN02652 111 ATSLFYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHS--G-RYLHFAKQLTSCGFGVYAMDWI----GHGGSDGLHGY 183 (395)
T ss_pred EEEEEECCCCCEEEEEEecCCCCCCceEEEEECCchHHH--H-HHHHHHHHHHHCCCEEEEeCCC----CCCCCCCCCCC
Confidence 35677787777777664 23567999999998753 2 3457899999899999999996 666543
Q ss_pred ---hhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 144 ---LQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 144 ---l~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
++..++|+.++++++..+.+..+++|+||||||.+++.++... ..+++|+++|+.+|..+
T Consensus 184 ~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~~p-~~~~~v~glVL~sP~l~ 246 (395)
T PLN02652 184 VPSLDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAASYP-SIEDKLEGIVLTSPALR 246 (395)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHHhcc-CcccccceEEEECcccc
Confidence 3456899999999998776667899999999999999887532 12358999999999864
No 15
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.70 E-value=3e-16 Score=126.62 Aligned_cols=96 Identities=24% Similarity=0.367 Sum_probs=75.3
Q ss_pred EEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh---------hhhHHHHHHHHHHHHhhCCCCcE
Q 027344 97 VIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL---------QQDAMEIDQLISYLINKDNSEGV 167 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl---------~~~~eDL~~lIe~L~~~~~~~~V 167 (224)
|||+||++.+. .++..+++.|. +||+|+++|+| |+|.+.. .+.++|+.++++.+ +.+++
T Consensus 1 vv~~hG~~~~~---~~~~~~~~~l~-~~~~v~~~d~~----G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~ 68 (228)
T PF12697_consen 1 VVFLHGFGGSS---ESWDPLAEALA-RGYRVIAFDLP----GHGRSDPPPDYSPYSIEDYAEDLAELLDAL----GIKKV 68 (228)
T ss_dssp EEEE-STTTTG---GGGHHHHHHHH-TTSEEEEEECT----TSTTSSSHSSGSGGSHHHHHHHHHHHHHHT----TTSSE
T ss_pred eEEECCCCCCH---HHHHHHHHHHh-CCCEEEEEecC----CccccccccccCCcchhhhhhhhhhccccc----ccccc
Confidence 79999998754 55667899995 89999999995 7777643 23455555555544 45789
Q ss_pred EEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
+|+||||||.+++.++.++ +++|+++|+++|+.....
T Consensus 69 ~lvG~S~Gg~~a~~~a~~~---p~~v~~~vl~~~~~~~~~ 105 (228)
T PF12697_consen 69 ILVGHSMGGMIALRLAARY---PDRVKGLVLLSPPPPLPD 105 (228)
T ss_dssp EEEEETHHHHHHHHHHHHS---GGGEEEEEEESESSSHHH
T ss_pred ccccccccccccccccccc---ccccccceeecccccccc
Confidence 9999999999999999997 889999999999987543
No 16
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.70 E-value=3.9e-16 Score=137.79 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=91.9
Q ss_pred ccccEEEEeCCCCceEEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChh----h
Q 027344 71 QFRGVLFKYGPKPVQVAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQ----Q 146 (224)
Q Consensus 71 ~~~g~l~~y~~~~~~v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~----~ 146 (224)
+++.+.+.... .+++|...+.+++|||+||++... ..|..+++.|. ++|+|+++|++ |||.++.. .
T Consensus 13 ~~~~~~~~~~~--~~i~y~~~G~~~~iv~lHG~~~~~---~~~~~~~~~l~-~~~~vi~~D~~----G~G~S~~~~~~~~ 82 (286)
T PRK03204 13 PFESRWFDSSR--GRIHYIDEGTGPPILLCHGNPTWS---FLYRDIIVALR-DRFRCVAPDYL----GFGLSERPSGFGY 82 (286)
T ss_pred cccceEEEcCC--cEEEEEECCCCCEEEEECCCCccH---HHHHHHHHHHh-CCcEEEEECCC----CCCCCCCCCcccc
Confidence 45666666644 478898876778999999997532 34566788887 57999999985 88876532 2
Q ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 147 DAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
..+|+.+.+..+.++.+.++++|+||||||.+++.|+.++ +++|+++|+++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~---p~~v~~lvl~~~~~ 136 (286)
T PRK03204 83 QIDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVER---ADRVRGVVLGNTWF 136 (286)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhC---hhheeEEEEECccc
Confidence 3566666666666666778999999999999999999987 89999999987653
No 17
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.70 E-value=1.5e-16 Score=140.28 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCceEEEeeC-CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------ChhhhHHHHH
Q 027344 82 KPVQVAFKTG-DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------SLQQDAMEID 152 (224)
Q Consensus 82 ~~~~v~y~~g-~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------sl~~~~eDL~ 152 (224)
++..|.|.+. +.+|+|||+||++.+. ..|..+++.|+++||+|+++|++ |||.+ +++++++++.
T Consensus 5 ~~~~~~~~~~~~~~p~vvliHG~~~~~---~~w~~~~~~L~~~g~~vi~~dl~----g~G~s~~~~~~~~~~~~~~~~l~ 77 (273)
T PLN02211 5 NGEEVTDMKPNRQPPHFVLIHGISGGS---WCWYKIRCLMENSGYKVTCIDLK----SAGIDQSDADSVTTFDEYNKPLI 77 (273)
T ss_pred cccccccccccCCCCeEEEECCCCCCc---CcHHHHHHHHHhCCCEEEEeccc----CCCCCCCCcccCCCHHHHHHHHH
Confidence 4455677664 5678999999998643 35677888998889999999996 66643 3444555555
Q ss_pred HHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 153 QLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 153 ~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++++.+. ..++++|+||||||.+++.++.++ +++|+++|++++.
T Consensus 78 ~~i~~l~---~~~~v~lvGhS~GG~v~~~~a~~~---p~~v~~lv~~~~~ 121 (273)
T PLN02211 78 DFLSSLP---ENEKVILVGHSAGGLSVTQAIHRF---PKKICLAVYVAAT 121 (273)
T ss_pred HHHHhcC---CCCCEEEEEECchHHHHHHHHHhC---hhheeEEEEeccc
Confidence 5555432 247899999999999999999886 8899999999874
No 18
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.69 E-value=6.5e-16 Score=137.36 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=85.4
Q ss_pred CCceEEEECCCCCCCC-ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-------ChhhhHHHHHHHHHHHHhhCCC
Q 027344 93 YQQQVIFIGGLTDGFF-ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-------SLQQDAMEIDQLISYLINKDNS 164 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~-~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-------sl~~~~eDL~~lIe~L~~~~~~ 164 (224)
.+++|||+||+++... ..+.+..+++.|.++||.|+++|++ |||.+ .+...++|+.++++++++. +.
T Consensus 24 ~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~----G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~-~~ 98 (266)
T TIGR03101 24 PRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLY----GCGDSAGDFAAARWDVWKEDVAAAYRWLIEQ-GH 98 (266)
T ss_pred CceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCC----CCCCCCCccccCCHHHHHHHHHHHHHHHHhc-CC
Confidence 3578999999986432 2345677899999999999999996 66655 2344579999999999764 56
Q ss_pred CcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 165 EGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
++|+|+||||||.+++.++.++ +++++++||++|+.+
T Consensus 99 ~~v~LvG~SmGG~vAl~~A~~~---p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 99 PPVTLWGLRLGALLALDAANPL---AAKCNRLVLWQPVVS 135 (266)
T ss_pred CCEEEEEECHHHHHHHHHHHhC---ccccceEEEeccccc
Confidence 7999999999999999999887 789999999999866
No 19
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.67 E-value=2.7e-16 Score=134.68 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=78.0
Q ss_pred eEEEeeCCCC-ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCC
Q 027344 85 QVAFKTGDYQ-QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDN 163 (224)
Q Consensus 85 ~v~y~~g~~~-~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~ 163 (224)
.++|.+.+.+ ++||||||++.+. ..|..++++|. +.|+|+++|+| |||.+...+ ..+++++++.+.+ ..
T Consensus 3 ~~~y~~~G~g~~~ivllHG~~~~~---~~w~~~~~~L~-~~~~vi~~Dl~----G~G~S~~~~-~~~~~~~~~~l~~-~~ 72 (256)
T PRK10349 3 NIWWQTKGQGNVHLVLLHGWGLNA---EVWRCIDEELS-SHFTLHLVDLP----GFGRSRGFG-ALSLADMAEAVLQ-QA 72 (256)
T ss_pred ccchhhcCCCCCeEEEECCCCCCh---hHHHHHHHHHh-cCCEEEEecCC----CCCCCCCCC-CCCHHHHHHHHHh-cC
Confidence 4677764445 4699999998653 45677888997 56999999995 888765322 1233344444443 34
Q ss_pred CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 164 SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 164 ~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
.++++|+||||||.++++++.++ +++|+++|+++|.
T Consensus 73 ~~~~~lvGhS~Gg~ia~~~a~~~---p~~v~~lili~~~ 108 (256)
T PRK10349 73 PDKAIWLGWSLGGLVASQIALTH---PERVQALVTVASS 108 (256)
T ss_pred CCCeEEEEECHHHHHHHHHHHhC---hHhhheEEEecCc
Confidence 57899999999999999999987 8999999999764
No 20
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.67 E-value=5e-16 Score=140.85 Aligned_cols=108 Identities=14% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCCceEEEECCCCCCCCCh--------------------h---cHHHHHHHHHhCCcEEEEEcccCCCCCCCCC------
Q 027344 92 DYQQQVIFIGGLTDGFFAT--------------------E---YLEPLAIALDKERWSLVQFLMTSSYTGYGTS------ 142 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~--------------------~---y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S------ 142 (224)
+++.+||++||++++.... + |.+.+++.|.++||+|+++|+| |||.+
T Consensus 19 ~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~r----GHG~S~~~~~~ 94 (332)
T TIGR01607 19 NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQ----GHGESDGLQNL 94 (332)
T ss_pred CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEeccc----ccCCCcccccc
Confidence 4678999999999975211 1 2246899999999999999997 55543
Q ss_pred -----ChhhhHHHHHHHHHHHHh-------------------hCC-CCcEEEEEEchhHHHHHHHHHHhccc-----ccc
Q 027344 143 -----SLQQDAMEIDQLISYLIN-------------------KDN-SEGVVLLGHSTGCQDIVHYMRANAAC-----SRA 192 (224)
Q Consensus 143 -----sl~~~~eDL~~lIe~L~~-------------------~~~-~~~VvLvGHSmGG~val~ya~~~~~~-----~~~ 192 (224)
++++.++|+.++++.+++ +++ ..+++|+||||||.+++.|+.++... ...
T Consensus 95 ~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~~ 174 (332)
T TIGR01607 95 RGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKLN 174 (332)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhccccccccccc
Confidence 345668888888888764 233 56899999999999999999865211 127
Q ss_pred cceEEEEcccc
Q 027344 193 VRAAIFQVLTI 203 (224)
Q Consensus 193 V~gvIL~aPv~ 203 (224)
|+|+|+++|..
T Consensus 175 i~g~i~~s~~~ 185 (332)
T TIGR01607 175 IKGCISLSGMI 185 (332)
T ss_pred cceEEEeccce
Confidence 99999999864
No 21
>PLN02965 Probable pheophorbidase
Probab=99.67 E-value=4.7e-16 Score=134.02 Aligned_cols=93 Identities=25% Similarity=0.302 Sum_probs=74.2
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhhhHHHHHHHHHHHHhhCCC-Cc
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQDAMEIDQLISYLINKDNS-EG 166 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~~~eDL~~lIe~L~~~~~~-~~ 166 (224)
+|||+||++.+. ..|..+++.|.++||+|+++|+| |||.|. +++.++|+.++++.+ +. ++
T Consensus 5 ~vvllHG~~~~~---~~w~~~~~~L~~~~~~via~Dl~----G~G~S~~~~~~~~~~~~~a~dl~~~l~~l----~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHGA---WCWYKLATLLDAAGFKSTCVDLT----GAGISLTDSNTVSSSDQYNRPLFALLSDL----PPDHK 73 (255)
T ss_pred EEEEECCCCCCc---CcHHHHHHHHhhCCceEEEecCC----cCCCCCCCccccCCHHHHHHHHHHHHHhc----CCCCC
Confidence 599999998543 35667888997789999999995 777653 334456666666654 33 58
Q ss_pred EEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 167 VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++|+||||||.+++.++.++ +++|+++|++++.
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~---p~~v~~lvl~~~~ 106 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKF---TDKISMAIYVAAA 106 (255)
T ss_pred EEEEecCcchHHHHHHHHhC---chheeEEEEEccc
Confidence 99999999999999999987 8999999999865
No 22
>PRK10985 putative hydrolase; Provisional
Probab=99.67 E-value=1.4e-15 Score=136.74 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=86.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-------hhhhHHHHHHHHHHHHhhCCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-------LQQDAMEIDQLISYLINKDNSE 165 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-------l~~~~eDL~~lIe~L~~~~~~~ 165 (224)
.+++||++||++++.. ..|...+++.|.++||+|+.+|+| |+|.+. .....+|+.+++++++++.+..
T Consensus 57 ~~p~vll~HG~~g~~~-~~~~~~~~~~l~~~G~~v~~~d~r----G~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~ 131 (324)
T PRK10985 57 HKPRLVLFHGLEGSFN-SPYAHGLLEAAQKRGWLGVVMHFR----GCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHV 131 (324)
T ss_pred CCCEEEEeCCCCCCCc-CHHHHHHHHHHHHCCCEEEEEeCC----CCCCCccCCcceECCCchHHHHHHHHHHHHhCCCC
Confidence 4689999999987543 357778999999999999999997 554321 1235799999999999877778
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
+++++||||||.+++.|+.++. ...+|+++|+++|+.|.+.
T Consensus 132 ~~~~vG~S~GG~i~~~~~~~~~-~~~~~~~~v~i~~p~~~~~ 172 (324)
T PRK10985 132 PTAAVGYSLGGNMLACLLAKEG-DDLPLDAAVIVSAPLMLEA 172 (324)
T ss_pred CEEEEEecchHHHHHHHHHhhC-CCCCccEEEEEcCCCCHHH
Confidence 9999999999999999998861 1224899999998877543
No 23
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.67 E-value=5.5e-16 Score=129.12 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhhhHHHHHHHHHHHHhhCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQDAMEIDQLISYLINKDNS 164 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~~~eDL~~lIe~L~~~~~~ 164 (224)
.+++|||+||++++. .++..+++.|. ++|+|+++|+| |||.+. +++.++|+.++++++ +.
T Consensus 12 ~~~~iv~lhG~~~~~---~~~~~~~~~l~-~~~~vi~~D~~----G~G~S~~~~~~~~~~~~~~~~~~~~i~~~----~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGSG---SYWAPQLDVLT-QRFHVVTYDHR----GTGRSPGELPPGYSIAHMADDVLQLLDAL----NI 79 (257)
T ss_pred CCCEEEEEcCCCcch---hHHHHHHHHHH-hccEEEEEcCC----CCCCCCCCCcccCCHHHHHHHHHHHHHHh----CC
Confidence 468999999998753 45566777776 58999999985 777653 334456666666554 45
Q ss_pred CcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 165 EGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
++++|+||||||.+++.++.++ +++|+++|++++..+.
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~---~~~v~~~i~~~~~~~~ 117 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRY---PERLLSLVLINAWSRP 117 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHC---hHHhHHheeecCCCCC
Confidence 7899999999999999999987 7899999999976543
No 24
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.67 E-value=5.3e-16 Score=140.21 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=94.7
Q ss_pred CCCCCCCCCccccccccccEEEEeCC-CCceEEEeeCC-CCceEEEE-CCCCCCCCChh--------cHHHHHH---HHH
Q 027344 56 SGGQDMGGPVVMGKNQFRGVLFKYGP-KPVQVAFKTGD-YQQQVIFI-GGLTDGFFATE--------YLEPLAI---ALD 121 (224)
Q Consensus 56 ~~~~~~~~p~~m~~~~~~g~l~~y~~-~~~~v~y~~g~-~~~~IVfV-HGlg~~~~~~~--------y~~~La~---~L~ 121 (224)
..|-|.++|.+-.-.++ +..+.+.. .+..++|+..+ .++++||+ ||++++.+... +|..+.+ .|.
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~y~~~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~ 96 (343)
T PRK08775 18 PTPDDDGPPAVRGEVAI-PLSMRHAGLEDLRLRYELIGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALD 96 (343)
T ss_pred cCccccCcccccceeec-ceeecCCCCCCceEEEEEeccCCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccC
Confidence 45677888877445556 77788876 46679999754 34445555 55554321111 5555664 564
Q ss_pred hCCcEEEEEcccCCCCCCCCC-----ChhhhHHHHHHHHHHHHhhCCCCc-EEEEEEchhHHHHHHHHHHhcccccccce
Q 027344 122 KERWSLVQFLMTSSYTGYGTS-----SLQQDAMEIDQLISYLINKDNSEG-VVLLGHSTGCQDIVHYMRANAACSRAVRA 195 (224)
Q Consensus 122 ~~Gy~Vi~~Dlrss~~G~G~S-----sl~~~~eDL~~lIe~L~~~~~~~~-VvLvGHSmGG~val~ya~~~~~~~~~V~g 195 (224)
.++|+|+++|+| |+|.+ ++.+.++|+.++++++ +.++ ++|+||||||.++++|+.++ +++|++
T Consensus 97 ~~~~~Vi~~Dl~----G~g~s~~~~~~~~~~a~dl~~ll~~l----~l~~~~~lvG~SmGG~vA~~~A~~~---P~~V~~ 165 (343)
T PRK08775 97 PARFRLLAFDFI----GADGSLDVPIDTADQADAIALLLDAL----GIARLHAFVGYSYGALVGLQFASRH---PARVRT 165 (343)
T ss_pred ccccEEEEEeCC----CCCCCCCCCCCHHHHHHHHHHHHHHc----CCCcceEEEEECHHHHHHHHHHHHC---hHhhhe
Confidence 468999999996 66643 2344566777666655 4545 57999999999999999998 999999
Q ss_pred EEEEcccc
Q 027344 196 AIFQVLTI 203 (224)
Q Consensus 196 vIL~aPv~ 203 (224)
+||+++..
T Consensus 166 LvLi~s~~ 173 (343)
T PRK08775 166 LVVVSGAH 173 (343)
T ss_pred EEEECccc
Confidence 99998764
No 25
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.65 E-value=6.5e-15 Score=124.07 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChh------hhHHHHHHHHHHHHhhCCCCc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQ------QDAMEIDQLISYLINKDNSEG 166 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~------~~~eDL~~lIe~L~~~~~~~~ 166 (224)
.+++|||+||+.++. ..++..+.+.|.++||+|+++|+| |+|.+... ...+++.+.+..+.++.+.++
T Consensus 24 ~~~~vl~~hG~~g~~--~~~~~~~~~~l~~~g~~vi~~d~~----G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS--HEYLENLRELLKEEGREVIMYDQL----GCGYSDQPDDSDELWTIDYFVDELEEVREKLGLDK 97 (288)
T ss_pred CCCeEEEEcCCCCcc--HHHHHHHHHHHHhcCCEEEEEcCC----CCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCc
Confidence 367899999976543 346666777777679999999996 66665422 123333333334444445678
Q ss_pred EEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 167 VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
++|+||||||.+++.++.++ +++|+++|+.+|+..
T Consensus 98 ~~liG~S~Gg~ia~~~a~~~---p~~v~~lvl~~~~~~ 132 (288)
T TIGR01250 98 FYLLGHSWGGMLAQEYALKY---GQHLKGLIISSMLDS 132 (288)
T ss_pred EEEEEeehHHHHHHHHHHhC---ccccceeeEeccccc
Confidence 99999999999999999987 899999999988654
No 26
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.65 E-value=1.1e-15 Score=128.89 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=72.6
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC------hhhhHHHHHHHHHHHHhhCCCCcE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS------LQQDAMEIDQLISYLINKDNSEGV 167 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss------l~~~~eDL~~lIe~L~~~~~~~~V 167 (224)
+|+|||+||++.+. ..|..+++.|. +|+|+++|+| |||.+. +++.++|+.+++++ .+.+++
T Consensus 2 ~p~vvllHG~~~~~---~~w~~~~~~l~--~~~vi~~D~~----G~G~S~~~~~~~~~~~~~~l~~~l~~----~~~~~~ 68 (242)
T PRK11126 2 LPWLVFLHGLLGSG---QDWQPVGEALP--DYPRLYIDLP----GHGGSAAISVDGFADVSRLLSQTLQS----YNILPY 68 (242)
T ss_pred CCEEEEECCCCCCh---HHHHHHHHHcC--CCCEEEecCC----CCCCCCCccccCHHHHHHHHHHHHHH----cCCCCe
Confidence 47899999998653 34566788873 7999999995 788763 34445556555554 356899
Q ss_pred EEEEEchhHHHHHHHHHHhccccc-ccceEEEEcccc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSR-AVRAAIFQVLTI 203 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~-~V~gvIL~aPv~ 203 (224)
+|+||||||.++++++.++ ++ +|+++|++++..
T Consensus 69 ~lvG~S~Gg~va~~~a~~~---~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 69 WLVGYSLGGRIAMYYACQG---LAGGLCGLIVEGGNP 102 (242)
T ss_pred EEEEECHHHHHHHHHHHhC---CcccccEEEEeCCCC
Confidence 9999999999999999987 44 599999998654
No 27
>PLN02511 hydrolase
Probab=99.65 E-value=2.7e-15 Score=138.97 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=85.8
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-------hhhHHHHHHHHHHHHhhCCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-------QQDAMEIDQLISYLINKDNSE 165 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-------~~~~eDL~~lIe~L~~~~~~~ 165 (224)
.+|+|||+||++++.. ..|+..++..+.++||+|+++|+| |+|.+.. ....+|+.++++++..+++..
T Consensus 99 ~~p~vvllHG~~g~s~-~~y~~~~~~~~~~~g~~vv~~d~r----G~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~~~~ 173 (388)
T PLN02511 99 DAPVLILLPGLTGGSD-DSYVRHMLLRARSKGWRVVVFNSR----GCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSA 173 (388)
T ss_pred CCCEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEecC----CCCCCCCCCcCEEcCCchHHHHHHHHHHHHHCCCC
Confidence 4689999999987543 347667777777899999999996 6776532 356899999999999887777
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccc--cceEEEEccccCh
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRA--VRAAIFQVLTIDF 205 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~--V~gvIL~aPv~D~ 205 (224)
+++++||||||.+++.|+.++ +++ |+++|+++++.|.
T Consensus 174 ~~~lvG~SlGg~i~~~yl~~~---~~~~~v~~~v~is~p~~l 212 (388)
T PLN02511 174 NLYAAGWSLGANILVNYLGEE---GENCPLSGAVSLCNPFDL 212 (388)
T ss_pred CEEEEEechhHHHHHHHHHhc---CCCCCceEEEEECCCcCH
Confidence 999999999999999999997 444 8898888877665
No 28
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.65 E-value=2.7e-15 Score=127.73 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=80.4
Q ss_pred CCceEEEeeCC--CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhhhHHHH
Q 027344 82 KPVQVAFKTGD--YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQDAMEI 151 (224)
Q Consensus 82 ~~~~v~y~~g~--~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~~~eDL 151 (224)
+...++|...+ .+++|||+||++.+. ..+..+++.|. ++|+|+.+|++ |+|.++ ++..++|+
T Consensus 14 ~~~~~~~~~~g~~~~~~vv~~hG~~~~~---~~~~~~~~~l~-~~~~vi~~D~~----G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 14 GPFHWHVQDMGPTAGPLLLLLHGTGAST---HSWRDLMPPLA-RSFRVVAPDLP----GHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred CCEEEEEEecCCCCCCeEEEEcCCCCCH---HHHHHHHHHHh-hCcEEEeecCC----CCCCCCCccccCCCHHHHHHHH
Confidence 44467787644 368999999998643 34566788887 47999999996 777653 23345555
Q ss_pred HHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 152 DQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 152 ~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
.++++ +.+.++++|+||||||.+++.++.++ +++++++|++++..
T Consensus 86 ~~~i~----~~~~~~~~lvG~S~Gg~~a~~~a~~~---p~~v~~~v~~~~~~ 130 (278)
T TIGR03056 86 SALCA----AEGLSPDGVIGHSAGAAIALRLALDG---PVTPRMVVGINAAL 130 (278)
T ss_pred HHHHH----HcCCCCceEEEECccHHHHHHHHHhC---CcccceEEEEcCcc
Confidence 55554 34567899999999999999999987 88999999998753
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.63 E-value=3.1e-15 Score=122.38 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=75.4
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-----hhhHHHHHH-HHHHHHhhCCCCcE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-----QQDAMEIDQ-LISYLINKDNSEGV 167 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-----~~~~eDL~~-lIe~L~~~~~~~~V 167 (224)
+++|||+||++++. ..+..+++.|. +||+|+.+|++ |+|.+.. ..+.+|+.+ +++.+.++.+.+++
T Consensus 1 ~~~vv~~hG~~~~~---~~~~~~~~~L~-~~~~v~~~d~~----g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (251)
T TIGR03695 1 KPVLVFLHGFLGSG---ADWQALIELLG-PHFRCLAIDLP----GHGSSQSPDEIERYDFEEAAQDILATLLDQLGIEPF 72 (251)
T ss_pred CCEEEEEcCCCCch---hhHHHHHHHhc-ccCeEEEEcCC----CCCCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeE
Confidence 47899999998643 35567889998 79999999985 7777642 122333332 24455555567899
Q ss_pred EEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
+|+||||||.+++.++.++ ++.|+++|+++|..
T Consensus 73 ~l~G~S~Gg~ia~~~a~~~---~~~v~~lil~~~~~ 105 (251)
T TIGR03695 73 FLVGYSMGGRIALYYALQY---PERVQGLILESGSP 105 (251)
T ss_pred EEEEeccHHHHHHHHHHhC---chheeeeEEecCCC
Confidence 9999999999999999997 88999999998753
No 30
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.63 E-value=2e-15 Score=124.15 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=73.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-------hhhhHHHHHHHHHHHHhhCCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-------LQQDAMEIDQLISYLINKDNSE 165 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-------l~~~~eDL~~lIe~L~~~~~~~ 165 (224)
.+|+|||+||++.+. ..+..+++.|. +||+|+.+|++ |+|.+. +.+.++|+.++++. .+.+
T Consensus 12 ~~~~li~~hg~~~~~---~~~~~~~~~l~-~~~~v~~~d~~----G~G~s~~~~~~~~~~~~~~~~~~~i~~----~~~~ 79 (251)
T TIGR02427 12 GAPVLVFINSLGTDL---RMWDPVLPALT-PDFRVLRYDKR----GHGLSDAPEGPYSIEDLADDVLALLDH----LGIE 79 (251)
T ss_pred CCCeEEEEcCcccch---hhHHHHHHHhh-cccEEEEecCC----CCCCCCCCCCCCCHHHHHHHHHHHHHH----hCCC
Confidence 468899999998653 34566778886 68999999995 677653 23345555555544 3467
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
+++|+||||||.+++.++.++ +++|+++|+++|..
T Consensus 80 ~v~liG~S~Gg~~a~~~a~~~---p~~v~~li~~~~~~ 114 (251)
T TIGR02427 80 RAVFCGLSLGGLIAQGLAARR---PDRVRALVLSNTAA 114 (251)
T ss_pred ceEEEEeCchHHHHHHHHHHC---HHHhHHHhhccCcc
Confidence 899999999999999999986 88999999998753
No 31
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.62 E-value=4.1e-15 Score=133.73 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=91.3
Q ss_pred CCCCceEEEeeC------CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------Chh
Q 027344 80 GPKPVQVAFKTG------DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------SLQ 145 (224)
Q Consensus 80 ~~~~~~v~y~~g------~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------sl~ 145 (224)
.+.+.++++... ..+..|+|+||+++.. ...+..+++.|++.||.|+++|++ |||.| +++
T Consensus 34 n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~--s~~~~~~a~~l~~~g~~v~a~D~~----GhG~SdGl~~yi~~~d 107 (313)
T KOG1455|consen 34 NPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHS--SWRYQSTAKRLAKSGFAVYAIDYE----GHGRSDGLHAYVPSFD 107 (313)
T ss_pred cCCCCEeEEEecccCCCCCCceEEEEEcCCcccc--hhhHHHHHHHHHhCCCeEEEeecc----CCCcCCCCcccCCcHH
Confidence 445556776641 3456889999999843 234567999999999999999985 67665 356
Q ss_pred hhHHHHHHHHHHHHh--hCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 146 QDAMEIDQLISYLIN--KDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 146 ~~~eDL~~lIe~L~~--~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
..++|+....+.++. ++...+.||+||||||.|++.+..+. +...+|+||+||.+
T Consensus 108 ~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~---p~~w~G~ilvaPmc 164 (313)
T KOG1455|consen 108 LVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKD---PNFWDGAILVAPMC 164 (313)
T ss_pred HHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhC---Ccccccceeeeccc
Confidence 678888888887553 56778999999999999999999986 89999999999963
No 32
>PLN02578 hydrolase
Probab=99.62 E-value=6.9e-15 Score=133.80 Aligned_cols=106 Identities=12% Similarity=0.144 Sum_probs=82.2
Q ss_pred CCceEEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-------hhhHHHHHHH
Q 027344 82 KPVQVAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-------QQDAMEIDQL 154 (224)
Q Consensus 82 ~~~~v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-------~~~~eDL~~l 154 (224)
.+.+++|...+.+++||||||++++. ..+..++..|. ++|+|+++|++ |+|.++. ...++|+.++
T Consensus 74 ~~~~i~Y~~~g~g~~vvliHG~~~~~---~~w~~~~~~l~-~~~~v~~~D~~----G~G~S~~~~~~~~~~~~a~~l~~~ 145 (354)
T PLN02578 74 RGHKIHYVVQGEGLPIVLIHGFGASA---FHWRYNIPELA-KKYKVYALDLL----GFGWSDKALIEYDAMVWRDQVADF 145 (354)
T ss_pred CCEEEEEEEcCCCCeEEEECCCCCCH---HHHHHHHHHHh-cCCEEEEECCC----CCCCCCCcccccCHHHHHHHHHHH
Confidence 34578888766778999999998753 34456677786 57999999995 7777643 2234566666
Q ss_pred HHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 155 ISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 155 Ie~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++.+. .++++|+||||||.+++.++.++ +++|+++||++|.
T Consensus 146 i~~~~----~~~~~lvG~S~Gg~ia~~~A~~~---p~~v~~lvLv~~~ 186 (354)
T PLN02578 146 VKEVV----KEPAVLVGNSLGGFTALSTAVGY---PELVAGVALLNSA 186 (354)
T ss_pred HHHhc----cCCeEEEEECHHHHHHHHHHHhC---hHhcceEEEECCC
Confidence 66553 57899999999999999999997 8999999998764
No 33
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.62 E-value=4.2e-15 Score=126.05 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=74.2
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC------hhhhHHHHHHHHHHHHhhCCCCc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS------LQQDAMEIDQLISYLINKDNSEG 166 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss------l~~~~eDL~~lIe~L~~~~~~~~ 166 (224)
.+++|||+||+.++. ..+..+++.|. ++|+|+.+|+| |+|.+. +.+.++|+.++++++ +.++
T Consensus 15 ~~~~iv~lhG~~~~~---~~~~~~~~~l~-~~~~vi~~D~~----G~G~s~~~~~~~~~~~~~d~~~~l~~l----~~~~ 82 (255)
T PRK10673 15 NNSPIVLVHGLFGSL---DNLGVLARDLV-NDHDIIQVDMR----NHGLSPRDPVMNYPAMAQDLLDTLDAL----QIEK 82 (255)
T ss_pred CCCCEEEECCCCCch---hHHHHHHHHHh-hCCeEEEECCC----CCCCCCCCCCCCHHHHHHHHHHHHHHc----CCCc
Confidence 578999999998654 34566788886 57999999996 677653 345566777777655 4578
Q ss_pred EEEEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 167 VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
++|+||||||.+++.++.++ +++|+++|+++
T Consensus 83 ~~lvGhS~Gg~va~~~a~~~---~~~v~~lvli~ 113 (255)
T PRK10673 83 ATFIGHSMGGKAVMALTALA---PDRIDKLVAID 113 (255)
T ss_pred eEEEEECHHHHHHHHHHHhC---HhhcceEEEEe
Confidence 99999999999999999887 88999999974
No 34
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.61 E-value=3.5e-15 Score=122.56 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=73.1
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
+++|||+||++++. ..+..+++.|. ++|+|+++|+| |+|.+.... ..+++++++.+.+.. .++++|+|||
T Consensus 4 ~~~iv~~HG~~~~~---~~~~~~~~~l~-~~~~vi~~d~~----G~G~s~~~~-~~~~~~~~~~~~~~~-~~~~~lvG~S 73 (245)
T TIGR01738 4 NVHLVLIHGWGMNA---EVFRCLDEELS-AHFTLHLVDLP----GHGRSRGFG-PLSLADAAEAIAAQA-PDPAIWLGWS 73 (245)
T ss_pred CceEEEEcCCCCch---hhHHHHHHhhc-cCeEEEEecCC----cCccCCCCC-CcCHHHHHHHHHHhC-CCCeEEEEEc
Confidence 47899999998653 35567888887 57999999985 888764322 124444555554433 3689999999
Q ss_pred hhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 174 TGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 174 mGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
|||.+++.++.++ +++|+++|++++.
T Consensus 74 ~Gg~~a~~~a~~~---p~~v~~~il~~~~ 99 (245)
T TIGR01738 74 LGGLVALHIAATH---PDRVRALVTVASS 99 (245)
T ss_pred HHHHHHHHHHHHC---HHhhheeeEecCC
Confidence 9999999999987 8899999998764
No 35
>PRK06489 hypothetical protein; Provisional
Probab=99.61 E-value=9.7e-15 Score=132.96 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=79.2
Q ss_pred CCceEEEeeCCC---------CceEEEECCCCCCCCChhcH-HHHHHHH-------HhCCcEEEEEcccCCCCCCCCCCh
Q 027344 82 KPVQVAFKTGDY---------QQQVIFIGGLTDGFFATEYL-EPLAIAL-------DKERWSLVQFLMTSSYTGYGTSSL 144 (224)
Q Consensus 82 ~~~~v~y~~g~~---------~~~IVfVHGlg~~~~~~~y~-~~La~~L-------~~~Gy~Vi~~Dlrss~~G~G~Ssl 144 (224)
++..++|...+. +++|||+||++++... |+ ..+.+.| ..++|+|+++|+| |||.++.
T Consensus 48 ~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~----GhG~S~~ 121 (360)
T PRK06489 48 PELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKS--FLSPTFAGELFGPGQPLDASKYFIILPDGI----GHGKSSK 121 (360)
T ss_pred CCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhh--hccchhHHHhcCCCCcccccCCEEEEeCCC----CCCCCCC
Confidence 356789987543 6899999999875322 22 2344444 2468999999995 8887643
Q ss_pred h----------hhHHHHH-HHHHHHHhhCCCCcEE-EEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 145 Q----------QDAMEID-QLISYLINKDNSEGVV-LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 145 ~----------~~~eDL~-~lIe~L~~~~~~~~Vv-LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
. ..++|+. ++++.+.++.+.++++ |+||||||+++++|+.++ |++|+++|++++.
T Consensus 122 p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~---P~~V~~LVLi~s~ 188 (360)
T PRK06489 122 PSDGLRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKY---PDFMDALMPMASQ 188 (360)
T ss_pred CCcCCCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhC---chhhheeeeeccC
Confidence 2 1234443 2333344455667875 899999999999999998 9999999999864
No 36
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.59 E-value=5e-15 Score=134.22 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=81.6
Q ss_pred CCceEEEeeCC-----CCceEEEECCCCCCCCChh--------cHHHHH---HHHHhCCcEEEEEcccCCCCCCCCCCh-
Q 027344 82 KPVQVAFKTGD-----YQQQVIFIGGLTDGFFATE--------YLEPLA---IALDKERWSLVQFLMTSSYTGYGTSSL- 144 (224)
Q Consensus 82 ~~~~v~y~~g~-----~~~~IVfVHGlg~~~~~~~--------y~~~La---~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl- 144 (224)
.+.+++|...+ .+++|||+||++++.+..+ +|+.++ +.|..++|+|+++|+|+. ++|.+..
T Consensus 14 ~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~--~~g~s~~~ 91 (351)
T TIGR01392 14 SDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGG--CYGSTGPS 91 (351)
T ss_pred CCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCC--CCCCCCCC
Confidence 35568888643 2578999999998653322 455554 366668999999999741 1332210
Q ss_pred --------------hhhHHHHHHHHHHHHhhCCCCc-EEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 145 --------------QQDAMEIDQLISYLINKDNSEG-VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 145 --------------~~~~eDL~~lIe~L~~~~~~~~-VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
...++|+.+.+..+.++.+.++ ++|+||||||++++.|+.++ +++|+++|++++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~---p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 92 SINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDY---PERVRAIVVLATSAR 163 (351)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHC---hHhhheEEEEccCCc
Confidence 1123444444444444456777 99999999999999999997 899999999987643
No 37
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.58 E-value=1.7e-14 Score=128.12 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=79.4
Q ss_pred CceEEEeeCCC--CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChh-----hhHHHHHHHH
Q 027344 83 PVQVAFKTGDY--QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQ-----QDAMEIDQLI 155 (224)
Q Consensus 83 ~~~v~y~~g~~--~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~-----~~~eDL~~lI 155 (224)
+.+++|...+. +++|||+||+.++... ..+.+.+..++|+|+++|+| |||.+... ...+|+.+.+
T Consensus 14 ~~~l~y~~~g~~~~~~lvllHG~~~~~~~----~~~~~~~~~~~~~vi~~D~~----G~G~S~~~~~~~~~~~~~~~~dl 85 (306)
T TIGR01249 14 NHQLYYEQSGNPDGKPVVFLHGGPGSGTD----PGCRRFFDPETYRIVLFDQR----GCGKSTPHACLEENTTWDLVADI 85 (306)
T ss_pred CcEEEEEECcCCCCCEEEEECCCCCCCCC----HHHHhccCccCCEEEEECCC----CCCCCCCCCCcccCCHHHHHHHH
Confidence 44678876442 5789999997654321 12334454578999999996 77766421 1244555555
Q ss_pred HHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 156 SYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 156 e~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+.+.++.+.++++++||||||.+++.|+.++ +++|+++|+++++..
T Consensus 86 ~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~---p~~v~~lvl~~~~~~ 131 (306)
T TIGR01249 86 EKLREKLGIKNWLVFGGSWGSTLALAYAQTH---PEVVTGLVLRGIFLL 131 (306)
T ss_pred HHHHHHcCCCCEEEEEECHHHHHHHHHHHHC---hHhhhhheeeccccC
Confidence 5555555677899999999999999999997 899999999987643
No 38
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.57 E-value=2.4e-14 Score=130.90 Aligned_cols=103 Identities=21% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhh-------HHHHHHHHHHHHhhCCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQD-------AMEIDQLISYLINKDNSE 165 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~-------~eDL~~lIe~L~~~~~~~ 165 (224)
.+.++|||||+|.+.. -|+ .-.+.|.+ .+.|+++|+ +|+|+|+.+.. .+...+-||..+.+.+.+
T Consensus 89 ~~~plVliHGyGAg~g--~f~-~Nf~~La~-~~~vyaiDl----lG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L~ 160 (365)
T KOG4409|consen 89 NKTPLVLIHGYGAGLG--LFF-RNFDDLAK-IRNVYAIDL----LGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGLE 160 (365)
T ss_pred CCCcEEEEeccchhHH--HHH-Hhhhhhhh-cCceEEecc----cCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCCc
Confidence 5789999999997752 222 33455654 899999999 59999875432 334555566667778899
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
+.+|+||||||.++..|+.+| |++|+.+||++|+.=.|
T Consensus 161 KmilvGHSfGGYLaa~YAlKy---PerV~kLiLvsP~Gf~~ 198 (365)
T KOG4409|consen 161 KMILVGHSFGGYLAAKYALKY---PERVEKLILVSPWGFPE 198 (365)
T ss_pred ceeEeeccchHHHHHHHHHhC---hHhhceEEEeccccccc
Confidence 999999999999999999999 99999999999974433
No 39
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.57 E-value=8.2e-14 Score=122.73 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=80.1
Q ss_pred CCceEEEECCCCCC-CCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-----ChhhhHHHHHHHHHHHHhhC-CCC
Q 027344 93 YQQQVIFIGGLTDG-FFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-----SLQQDAMEIDQLISYLINKD-NSE 165 (224)
Q Consensus 93 ~~~~IVfVHGlg~~-~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-----sl~~~~eDL~~lIe~L~~~~-~~~ 165 (224)
.++.||++||..+. ....+.+..++++|.++||.|+++|++ |||.+ .+.+..+|+.+++++++++. +.+
T Consensus 25 ~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~----G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~~ 100 (274)
T TIGR03100 25 HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYR----GMGDSEGENLGFEGIDADIAAAIDAFREAAPHLR 100 (274)
T ss_pred CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 34567777665432 223445667899999999999999996 67764 34456789999999998764 457
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+|+|+||||||.+++.|+.. +++|+++|+++|+..
T Consensus 101 ~i~l~G~S~Gg~~a~~~a~~----~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 101 RIVAWGLCDAASAALLYAPA----DLRVAGLVLLNPWVR 135 (274)
T ss_pred cEEEEEECHHHHHHHHHhhh----CCCccEEEEECCccC
Confidence 89999999999999999765 468999999999854
No 40
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.56 E-value=4.1e-14 Score=131.69 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhh-------hHH-HHHHHHHHHHhhCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQ-------DAM-EIDQLISYLINKDNS 164 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~-------~~e-DL~~lIe~L~~~~~~ 164 (224)
.+++|||+||++++. .++...++.|.+ +|+|+++|+| |+|.+.... +++ ++.+.++.++++.+.
T Consensus 104 ~~p~vvllHG~~~~~---~~~~~~~~~L~~-~~~vi~~D~r----G~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~ 175 (402)
T PLN02894 104 DAPTLVMVHGYGASQ---GFFFRNFDALAS-RFRVIAIDQL----GWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNL 175 (402)
T ss_pred CCCEEEEECCCCcch---hHHHHHHHHHHh-CCEEEEECCC----CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHcCC
Confidence 568999999998643 233446677764 6999999996 777764221 111 122223333334566
Q ss_pred CcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 165 EGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++++|+||||||.+++.|+.++ +++|+++|+++|.
T Consensus 176 ~~~~lvGhS~GG~la~~~a~~~---p~~v~~lvl~~p~ 210 (402)
T PLN02894 176 SNFILLGHSFGGYVAAKYALKH---PEHVQHLILVGPA 210 (402)
T ss_pred CCeEEEEECHHHHHHHHHHHhC---chhhcEEEEECCc
Confidence 7999999999999999999997 8999999999986
No 41
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.56 E-value=4.2e-14 Score=135.11 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=81.0
Q ss_pred EEeCC-CCceEEEeeCC-----CCceEEEECCCCCCCCChhcHHHHHHHHH---hCCcEEEEEcccCCCCCCCCCChh--
Q 027344 77 FKYGP-KPVQVAFKTGD-----YQQQVIFIGGLTDGFFATEYLEPLAIALD---KERWSLVQFLMTSSYTGYGTSSLQ-- 145 (224)
Q Consensus 77 ~~y~~-~~~~v~y~~g~-----~~~~IVfVHGlg~~~~~~~y~~~La~~L~---~~Gy~Vi~~Dlrss~~G~G~Ssl~-- 145 (224)
+.|-. ++.+++|...+ .+++|||+||++.+.. .|...+...|. +++|+|+++|++ |||.+...
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~----G~G~S~~p~~ 251 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLL----GFGRSPKPAD 251 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCC----CCCCCcCCCC
Confidence 34433 45678888743 2579999999987542 22222334443 479999999995 78876422
Q ss_pred --hhHHHHHHHH-HHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 146 --QDAMEIDQLI-SYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 146 --~~~eDL~~lI-e~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
...+++.+.+ +.+.+..+.++++|+||||||.+++.++.++ +++|+++||++|..
T Consensus 252 ~~ytl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~---Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 252 SLYTLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKH---PGAVKSLTLLAPPY 309 (481)
T ss_pred CcCCHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhC---hHhccEEEEECCCc
Confidence 1123333333 2344455678999999999999999999997 89999999999754
No 42
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.56 E-value=6.4e-14 Score=130.27 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=83.2
Q ss_pred CCCceEEEeeCC--CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-----------hhh
Q 027344 81 PKPVQVAFKTGD--YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-----------QQD 147 (224)
Q Consensus 81 ~~~~~v~y~~g~--~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-----------~~~ 147 (224)
.+...++|...+ .+++||||||++.+. ..|..+++.|. ++|+|+++|++ |||.++. ++.
T Consensus 112 ~~~~~~~y~~~G~~~~~~ivllHG~~~~~---~~w~~~~~~L~-~~~~Via~Dlp----G~G~S~~p~~~~~~~ys~~~~ 183 (383)
T PLN03084 112 SDLFRWFCVESGSNNNPPVLLIHGFPSQA---YSYRKVLPVLS-KNYHAIAFDWL----GFGFSDKPQPGYGFNYTLDEY 183 (383)
T ss_pred CCceEEEEEecCCCCCCeEEEECCCCCCH---HHHHHHHHHHh-cCCEEEEECCC----CCCCCCCCcccccccCCHHHH
Confidence 344567787644 368999999998643 34566888887 58999999995 7776542 334
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
++||.++++.+ +.++++|+||||||.+++.|+.++ +++|+++||++|...
T Consensus 184 a~~l~~~i~~l----~~~~~~LvG~s~GG~ia~~~a~~~---P~~v~~lILi~~~~~ 233 (383)
T PLN03084 184 VSSLESLIDEL----KSDKVSLVVQGYFSPPVVKYASAH---PDKIKKLILLNPPLT 233 (383)
T ss_pred HHHHHHHHHHh----CCCCceEEEECHHHHHHHHHHHhC---hHhhcEEEEECCCCc
Confidence 55555555544 467899999999999999999997 899999999998753
No 43
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.55 E-value=6.7e-14 Score=126.99 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=95.7
Q ss_pred ccccccEEEEeCCCCceEEEeeCC--CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh--
Q 027344 69 KNQFRGVLFKYGPKPVQVAFKTGD--YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-- 144 (224)
Q Consensus 69 ~~~~~g~l~~y~~~~~~v~y~~g~--~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-- 144 (224)
...++.+.++|.. ..++|..++ .+|+|+|+||+.+.+.. ++.....|+.+||+|+++|+| |||.++-
T Consensus 19 ~~~~~hk~~~~~g--I~~h~~e~g~~~gP~illlHGfPe~wys---wr~q~~~la~~~~rviA~Dlr----GyG~Sd~P~ 89 (322)
T KOG4178|consen 19 LSAISHKFVTYKG--IRLHYVEGGPGDGPIVLLLHGFPESWYS---WRHQIPGLASRGYRVIAPDLR----GYGFSDAPP 89 (322)
T ss_pred hhhcceeeEEEcc--EEEEEEeecCCCCCEEEEEccCCccchh---hhhhhhhhhhcceEEEecCCC----CCCCCCCCC
Confidence 4457788888877 678888754 68999999999987643 334567888899999999996 8998753
Q ss_pred -------hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 145 -------QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 145 -------~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
...++|+..++++|- .++++|+||.||++++.+++..+ +++|+|+|++.-
T Consensus 90 ~~~~Yt~~~l~~di~~lld~Lg----~~k~~lvgHDwGaivaw~la~~~---Perv~~lv~~nv 146 (322)
T KOG4178|consen 90 HISEYTIDELVGDIVALLDHLG----LKKAFLVGHDWGAIVAWRLALFY---PERVDGLVTLNV 146 (322)
T ss_pred CcceeeHHHHHHHHHHHHHHhc----cceeEEEeccchhHHHHHHHHhC---hhhcceEEEecC
Confidence 345778888888774 78999999999999999999998 999999999863
No 44
>PRK07581 hypothetical protein; Validated
Probab=99.55 E-value=2e-14 Score=129.00 Aligned_cols=124 Identities=22% Similarity=0.202 Sum_probs=83.9
Q ss_pred cccEEEEeCC--CCceEEEeeCC-----CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh
Q 027344 72 FRGVLFKYGP--KPVQVAFKTGD-----YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL 144 (224)
Q Consensus 72 ~~g~l~~y~~--~~~~v~y~~g~-----~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl 144 (224)
++.-.+..+. ++..++|...+ ..++||++||++.+.....++-...+.|..++|+|+++|+| |||.|..
T Consensus 12 ~~~~~~~~g~~~~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~----G~G~S~~ 87 (339)
T PRK07581 12 LGDVELQSGATLPDARLAYKTYGTLNAAKDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMF----GNGLSSS 87 (339)
T ss_pred eCCeEecCCCCcCCceEEEEecCccCCCCCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCC----CCCCCCC
Confidence 4444444444 35678888633 23567777887744222111100013555578999999995 8887653
Q ss_pred hh---------------hHHHHHHHHHHHHhhCCCCc-EEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 145 QQ---------------DAMEIDQLISYLINKDNSEG-VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 145 ~~---------------~~eDL~~lIe~L~~~~~~~~-VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
.. .++|+.++.+.+.+..+.++ ++||||||||+++++++.++ |++|+++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~---P~~V~~Lvli~~~ 158 (339)
T PRK07581 88 PSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRY---PDMVERAAPIAGT 158 (339)
T ss_pred CCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHC---HHHHhhheeeecC
Confidence 21 25777776666666667888 47999999999999999998 9999999999754
No 45
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.54 E-value=8.6e-14 Score=126.28 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=82.3
Q ss_pred CceEEEECCCCCCCCCh--hcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC----ChhhhH-HHHHHHHHHHHhhCCCCc
Q 027344 94 QQQVIFIGGLTDGFFAT--EYLEPLAIALDKERWSLVQFLMTSSYTGYGTS----SLQQDA-MEIDQLISYLINKDNSEG 166 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~--~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S----sl~~~~-eDL~~lIe~L~~~~~~~~ 166 (224)
+++||++||+..+.... .-...++++|.++||+|+.+|++ |+|.+ ++++.+ +|+.+++++++++.+.++
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~----g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~~~~~ 137 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWG----YPDRADRYLTLDDYINGYIDKCVDYICRTSKLDQ 137 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCC----CCCHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999986432100 01246889999999999999996 44432 344554 458999999998888889
Q ss_pred EEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 167 VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
++|+||||||.+++.|+.++ +++|+++|+++|+.|.
T Consensus 138 i~lvGhS~GG~i~~~~~~~~---~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 138 ISLLGICQGGTFSLCYAALY---PDKIKNLVTMVTPVDF 173 (350)
T ss_pred ccEEEECHHHHHHHHHHHhC---chheeeEEEecccccc
Confidence 99999999999999999887 7889999999998774
No 46
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.52 E-value=3.2e-13 Score=105.12 Aligned_cols=95 Identities=22% Similarity=0.361 Sum_probs=75.2
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh-hCCCCcEEEEEEch
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN-KDNSEGVVLLGHST 174 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~-~~~~~~VvLvGHSm 174 (224)
+|||+||++.+. ..+..+++.|.++||.|+.+|++ +++.+ ...+++.++++.+.+ +.+.++|+|+||||
T Consensus 1 ~vv~~HG~~~~~---~~~~~~~~~l~~~G~~v~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~l~G~S~ 70 (145)
T PF12695_consen 1 VVVLLHGWGGSR---RDYQPLAEALAEQGYAVVAFDYP----GHGDS---DGADAVERVLADIRAGYPDPDRIILIGHSM 70 (145)
T ss_dssp EEEEECTTTTTT---HHHHHHHHHHHHTTEEEEEESCT----TSTTS---HHSHHHHHHHHHHHHHHCTCCEEEEEEETH
T ss_pred CEEEECCCCCCH---HHHHHHHHHHHHCCCEEEEEecC----CCCcc---chhHHHHHHHHHHHhhcCCCCcEEEEEEcc
Confidence 589999998742 34567999999999999999985 66664 334467777776533 24678999999999
Q ss_pred hHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 175 GCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 175 GG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
||.+++.++.+ ..+|+++|+++|..+
T Consensus 71 Gg~~a~~~~~~----~~~v~~~v~~~~~~~ 96 (145)
T PF12695_consen 71 GGAIAANLAAR----NPRVKAVVLLSPYPD 96 (145)
T ss_dssp HHHHHHHHHHH----STTESEEEEESESSG
T ss_pred CcHHHHHHhhh----ccceeEEEEecCccc
Confidence 99999999987 379999999999643
No 47
>PRK13604 luxD acyl transferase; Provisional
Probab=99.51 E-value=1.5e-13 Score=124.60 Aligned_cols=105 Identities=10% Similarity=0.158 Sum_probs=80.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCC-CC--C-CCCCChhhhHHHHHHHHHHHHhhCCCCcEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSS-YT--G-YGTSSLQQDAMEIDQLISYLINKDNSEGVV 168 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss-~~--G-~G~Ssl~~~~eDL~~lIe~L~~~~~~~~Vv 168 (224)
..++||+.||+++.. .++..+|++|.++||.|+.+|+|+. +. | ++..+.....+|+.++++|++++ +.++|.
T Consensus 36 ~~~~vIi~HGf~~~~---~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~-~~~~I~ 111 (307)
T PRK13604 36 KNNTILIASGFARRM---DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTR-GINNLG 111 (307)
T ss_pred CCCEEEEeCCCCCCh---HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhc-CCCceE
Confidence 457899999999753 3467899999999999999998632 11 1 11112334579999999999875 567899
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
|+||||||.+++..+.+ .+|+++|+.+|+.+.+
T Consensus 112 LiG~SmGgava~~~A~~-----~~v~~lI~~sp~~~l~ 144 (307)
T PRK13604 112 LIAASLSARIAYEVINE-----IDLSFLITAVGVVNLR 144 (307)
T ss_pred EEEECHHHHHHHHHhcC-----CCCCEEEEcCCcccHH
Confidence 99999999997555543 3599999999999944
No 48
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.51 E-value=2.1e-13 Score=122.34 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=77.7
Q ss_pred eEEEeeC--CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh---hhhHHHHHHHHHHHH
Q 027344 85 QVAFKTG--DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL---QQDAMEIDQLISYLI 159 (224)
Q Consensus 85 ~v~y~~g--~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl---~~~~eDL~~lIe~L~ 159 (224)
.++|... +.+++|||+||++++. ..+..+++.|.+ +|+|+++|++ |||.+.. ..+.+++.+.+..+.
T Consensus 120 ~i~~~~~g~~~~~~vl~~HG~~~~~---~~~~~~~~~l~~-~~~v~~~d~~----g~G~s~~~~~~~~~~~~~~~~~~~~ 191 (371)
T PRK14875 120 TVRYLRLGEGDGTPVVLIHGFGGDL---NNWLFNHAALAA-GRPVIALDLP----GHGASSKAVGAGSLDELAAAVLAFL 191 (371)
T ss_pred EEEEecccCCCCCeEEEECCCCCcc---chHHHHHHHHhc-CCEEEEEcCC----CCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4555543 2468999999998654 234557777874 6999999985 6776521 123444444444444
Q ss_pred hhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 160 NKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 160 ~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++.+.++++|+||||||.+++.++.++ +++|+++|+++|.
T Consensus 192 ~~~~~~~~~lvG~S~Gg~~a~~~a~~~---~~~v~~lv~~~~~ 231 (371)
T PRK14875 192 DALGIERAHLVGHSMGGAVALRLAARA---PQRVASLTLIAPA 231 (371)
T ss_pred HhcCCccEEEEeechHHHHHHHHHHhC---chheeEEEEECcC
Confidence 455667899999999999999999987 8899999999886
No 49
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.48 E-value=2.5e-13 Score=125.01 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=79.7
Q ss_pred CCceEEEeeCC-----CCceEEEECCCCCCCCChh----------cHHHHH---HHHHhCCcEEEEEcccCCCCC-CC--
Q 027344 82 KPVQVAFKTGD-----YQQQVIFIGGLTDGFFATE----------YLEPLA---IALDKERWSLVQFLMTSSYTG-YG-- 140 (224)
Q Consensus 82 ~~~~v~y~~g~-----~~~~IVfVHGlg~~~~~~~----------y~~~La---~~L~~~Gy~Vi~~Dlrss~~G-~G-- 140 (224)
.+..++|...+ .+|+|||+||++.+.+... +|+.++ ..|..++|+|+++|+++.+.| .+
T Consensus 31 ~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~ 110 (379)
T PRK00175 31 PPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPS 110 (379)
T ss_pred CCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCC
Confidence 34568888743 2589999999997653211 455554 244457999999998642110 01
Q ss_pred ---------------CCChhhhHHHHHHHHHHHHhhCCCCc-EEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 141 ---------------TSSLQQDAMEIDQLISYLINKDNSEG-VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 141 ---------------~Ssl~~~~eDL~~lIe~L~~~~~~~~-VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
..++.+.++|+.++++++ +.++ ++|+||||||.+++.|+.++ +++|+++|++++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----~~~~~~~lvG~S~Gg~ia~~~a~~~---p~~v~~lvl~~~~~ 182 (379)
T PRK00175 111 SINPDTGKPYGSDFPVITIRDWVRAQARLLDAL----GITRLAAVVGGSMGGMQALEWAIDY---PDRVRSALVIASSA 182 (379)
T ss_pred CCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh----CCCCceEEEEECHHHHHHHHHHHhC---hHhhhEEEEECCCc
Confidence 112344556666666554 5677 58999999999999999998 99999999998654
No 50
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.46 E-value=1.2e-12 Score=122.57 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=77.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh---hhhH-HHHHHHHHHHHhh--CCCCc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL---QQDA-MEIDQLISYLINK--DNSEG 166 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl---~~~~-eDL~~lIe~L~~~--~~~~~ 166 (224)
..|+||++||+.+. ...++..++++|.++||+|+++|+| |+|.+.. ..+. ....++++++.+. .+.++
T Consensus 193 ~~P~Vli~gG~~~~--~~~~~~~~~~~La~~Gy~vl~~D~p----G~G~s~~~~~~~d~~~~~~avld~l~~~~~vd~~r 266 (414)
T PRK05077 193 PFPTVLVCGGLDSL--QTDYYRLFRDYLAPRGIAMLTIDMP----SVGFSSKWKLTQDSSLLHQAVLNALPNVPWVDHTR 266 (414)
T ss_pred CccEEEEeCCcccc--hhhhHHHHHHHHHhCCCEEEEECCC----CCCCCCCCCccccHHHHHHHHHHHHHhCcccCccc
Confidence 46788877887642 1245566888999999999999996 6666532 1222 2335677888653 25679
Q ss_pred EEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 167 VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
|+++||||||.+++.++..+ +++|+++|+++|+.+
T Consensus 267 i~l~G~S~GG~~Al~~A~~~---p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 267 VAAFGFRFGANVAVRLAYLE---PPRLKAVACLGPVVH 301 (414)
T ss_pred EEEEEEChHHHHHHHHHHhC---CcCceEEEEECCccc
Confidence 99999999999999999876 789999999999865
No 51
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.46 E-value=1e-12 Score=116.86 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHH-hCCcEEEEEcccCCCCCCCCCCh-------hhhHHHHHHHHHHHHhh--C
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALD-KERWSLVQFLMTSSYTGYGTSSL-------QQDAMEIDQLISYLINK--D 162 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~Vi~~Dlrss~~G~G~Ssl-------~~~~eDL~~lIe~L~~~--~ 162 (224)
.++++|+||||+++. ...+...++++|. +.+|+|+++|++ +++...+ ....+++.+++++|.++ .
T Consensus 35 ~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~----~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~ 109 (275)
T cd00707 35 SRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWG----RGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGL 109 (275)
T ss_pred CCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECc----cccccChHHHHHhHHHHHHHHHHHHHHHHHhcCC
Confidence 578999999998754 2245556776554 468999999995 3333222 22356788888888765 3
Q ss_pred CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
+.++|+||||||||+++..++.+. +++|+++|++.|..
T Consensus 110 ~~~~i~lIGhSlGa~vAg~~a~~~---~~~v~~iv~LDPa~ 147 (275)
T cd00707 110 SLENVHLIGHSLGAHVAGFAGKRL---NGKLGRITGLDPAG 147 (275)
T ss_pred ChHHEEEEEecHHHHHHHHHHHHh---cCccceeEEecCCc
Confidence 567899999999999999999887 77999999998864
No 52
>PRK10566 esterase; Provisional
Probab=99.45 E-value=9.9e-13 Score=112.16 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-------Ch-------hhhHHHHHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-------SL-------QQDAMEIDQLISYL 158 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-------sl-------~~~~eDL~~lIe~L 158 (224)
..|+|||+||++++. ..+..+++.|.++||+|+++|+| |+|.+ .+ ....+|+.++++++
T Consensus 26 ~~p~vv~~HG~~~~~---~~~~~~~~~l~~~G~~v~~~d~~----g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (249)
T PRK10566 26 PLPTVFFYHGFTSSK---LVYSYFAVALAQAGFRVIMPDAP----MHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAI 98 (249)
T ss_pred CCCEEEEeCCCCccc---chHHHHHHHHHhCCCEEEEecCC----cccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 458999999997653 23456889999999999999996 44432 11 12467888888888
Q ss_pred Hhh--CCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 159 INK--DNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 159 ~~~--~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+++ .+.++|+|+||||||.+++.++.++
T Consensus 99 ~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~ 128 (249)
T PRK10566 99 REEGWLLDDRLAVGGASMGGMTALGIMARH 128 (249)
T ss_pred HhcCCcCccceeEEeecccHHHHHHHHHhC
Confidence 765 3567899999999999999998875
No 53
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.44 E-value=2.4e-12 Score=120.23 Aligned_cols=127 Identities=16% Similarity=0.247 Sum_probs=101.3
Q ss_pred ccccEEEEeCCCCceEEEe--e---------CCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCC
Q 027344 71 QFRGVLFKYGPKPVQVAFK--T---------GDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGY 139 (224)
Q Consensus 71 ~~~g~l~~y~~~~~~v~y~--~---------g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~ 139 (224)
+.++.++++...+ .+.+. . .+..|+||++||++++.+. .|...++..+.++||+|+.++.| |.
T Consensus 92 ~y~Reii~~~DGG-~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~-~YVr~lv~~a~~~G~r~VVfN~R----G~ 165 (409)
T KOG1838|consen 92 EYTREIIKTSDGG-TVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHE-SYVRHLVHEAQRKGYRVVVFNHR----GL 165 (409)
T ss_pred cceeEEEEeCCCC-EEEEeeccCcccccCCCCCCCcEEEEecCCCCCChh-HHHHHHHHHHHhCCcEEEEECCC----CC
Confidence 5677777776643 22221 1 1346899999999987665 89999999999999999999986 66
Q ss_pred CCCCh-------hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 140 GTSSL-------QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 140 G~Ssl-------~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
|.+.+ ....+||++++++++++++..+++.+|.||||++.+.|+.+...+..-+.+++++.|+.
T Consensus 166 ~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 166 GGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred CCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 65543 24589999999999999999999999999999999999999755555677778888875
No 54
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.44 E-value=1.3e-12 Score=123.64 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=79.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHh--CCcEEEEEcccCCCCCCCCCCh-------hhhHHHHHHHHHHHHhh--
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDK--ERWSLVQFLMTSSYTGYGTSSL-------QQDAMEIDQLISYLINK-- 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~--~Gy~Vi~~Dlrss~~G~G~Ssl-------~~~~eDL~~lIe~L~~~-- 161 (224)
.+|++|+||||+++..+..|...++++|.+ ..|+|+++|++ |+|.+.+ ....+++++++++|.++
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~----g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWL----SRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECC----CcCCCCCccccccHHHHHHHHHHHHHHHHHhhC
Confidence 578999999998643233456567776642 36999999995 5555432 23457788889888654
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
.+.++|+||||||||+++..++... +++|.++|++.|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~---p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLT---KHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhC---CcceeEEEEEcCCC
Confidence 3468999999999999999998876 78999999999864
No 55
>PRK05855 short chain dehydrogenase; Validated
Probab=99.43 E-value=1.1e-12 Score=123.99 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=76.9
Q ss_pred CCCCceEEEeeCC--CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC---------hhhhH
Q 027344 80 GPKPVQVAFKTGD--YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS---------LQQDA 148 (224)
Q Consensus 80 ~~~~~~v~y~~g~--~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss---------l~~~~ 148 (224)
..++..++|...+ .+++|||+||++++. .+|..+++.| .++|+|+++|+| |||.|+ +++.+
T Consensus 9 ~~~g~~l~~~~~g~~~~~~ivllHG~~~~~---~~w~~~~~~L-~~~~~Vi~~D~~----G~G~S~~~~~~~~~~~~~~a 80 (582)
T PRK05855 9 SSDGVRLAVYEWGDPDRPTVVLVHGYPDNH---EVWDGVAPLL-ADRFRVVAYDVR----GAGRSSAPKRTAAYTLARLA 80 (582)
T ss_pred eeCCEEEEEEEcCCCCCCeEEEEcCCCchH---HHHHHHHHHh-hcceEEEEecCC----CCCCCCCCCcccccCHHHHH
Confidence 3445567777633 468999999998653 4566788888 479999999995 777653 44567
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEE
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~ 199 (224)
+|+.++++++. ..++++|+||||||.+++.++.+. ..++++..+++.
T Consensus 81 ~dl~~~i~~l~---~~~~~~lvGhS~Gg~~a~~~a~~~-~~~~~v~~~~~~ 127 (582)
T PRK05855 81 DDFAAVIDAVS---PDRPVHLLAHDWGSIQGWEAVTRP-RAAGRIASFTSV 127 (582)
T ss_pred HHHHHHHHHhC---CCCcEEEEecChHHHHHHHHHhCc-cchhhhhhheec
Confidence 78888887663 134599999999999999988763 224455544443
No 56
>PLN00021 chlorophyllase
Probab=99.40 E-value=5.4e-12 Score=114.55 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=78.8
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh----------
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK---------- 161 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~---------- 161 (224)
+..|+|||+||++... .++..+++.|.++||.|+++|++. ++......+++|..++++++.+.
T Consensus 50 g~~PvVv~lHG~~~~~---~~y~~l~~~Las~G~~VvapD~~g----~~~~~~~~~i~d~~~~~~~l~~~l~~~l~~~~~ 122 (313)
T PLN00021 50 GTYPVLLFLHGYLLYN---SFYSQLLQHIASHGFIVVAPQLYT----LAGPDGTDEIKDAAAVINWLSSGLAAVLPEGVR 122 (313)
T ss_pred CCCCEEEEECCCCCCc---ccHHHHHHHHHhCCCEEEEecCCC----cCCCCchhhHHHHHHHHHHHHhhhhhhcccccc
Confidence 3568999999998643 355678899999999999999752 32222334566677777776642
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcc--cccccceEEEEccccCh
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAA--CSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~--~~~~V~gvIL~aPv~D~ 205 (224)
.+.++++|+||||||.+++.++.++.. .+.+|+++|++.|+...
T Consensus 123 ~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 123 PDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred cChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 234689999999999999999988621 12478999999998654
No 57
>PRK11071 esterase YqiA; Provisional
Probab=99.40 E-value=3.7e-12 Score=107.27 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=65.0
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHh--CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDK--ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~--~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
|+|||+|||+++...+. ...+.+.|.+ .+|+|+++|++ ||+ ++.++++. .+.++.+.++++|+||
T Consensus 2 p~illlHGf~ss~~~~~-~~~~~~~l~~~~~~~~v~~~dl~----g~~----~~~~~~l~----~l~~~~~~~~~~lvG~ 68 (190)
T PRK11071 2 STLLYLHGFNSSPRSAK-ATLLKNWLAQHHPDIEMIVPQLP----PYP----ADAAELLE----SLVLEHGGDPLGLVGS 68 (190)
T ss_pred CeEEEECCCCCCcchHH-HHHHHHHHHHhCCCCeEEeCCCC----CCH----HHHHHHHH----HHHHHcCCCCeEEEEE
Confidence 57999999987643221 1235566654 37999999995 553 23344444 4444455678999999
Q ss_pred chhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 173 STGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 173 SmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
||||.+++.++.++ + + .+|+++|..++
T Consensus 69 S~Gg~~a~~~a~~~---~--~-~~vl~~~~~~~ 95 (190)
T PRK11071 69 SLGGYYATWLSQCF---M--L-PAVVVNPAVRP 95 (190)
T ss_pred CHHHHHHHHHHHHc---C--C-CEEEECCCCCH
Confidence 99999999999987 4 2 46889998884
No 58
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.37 E-value=8.7e-12 Score=133.62 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=82.8
Q ss_pred cccEEEEeCCCCce--EEEeeCC---CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChh-
Q 027344 72 FRGVLFKYGPKPVQ--VAFKTGD---YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQ- 145 (224)
Q Consensus 72 ~~g~l~~y~~~~~~--v~y~~g~---~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~- 145 (224)
++...++.+..+.. ++|...+ .+++|||+||++++. ..|..+++.|. ++|+|+.+|+| |||.+...
T Consensus 1344 l~~~~~~v~~~~~~~~i~~~~~G~~~~~~~vVllHG~~~s~---~~w~~~~~~L~-~~~rVi~~Dl~----G~G~S~~~~ 1415 (1655)
T PLN02980 1344 VRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTG---EDWIPIMKAIS-GSARCISIDLP----GHGGSKIQN 1415 (1655)
T ss_pred CceEEEEEccCceEEEEEEEecCCCCCCCeEEEECCCCCCH---HHHHHHHHHHh-CCCEEEEEcCC----CCCCCCCcc
Confidence 44444555544322 3444322 367999999998754 34567888886 57999999985 77765421
Q ss_pred ----------hhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 146 ----------QDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 146 ----------~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
..++++.+.+..+.++.+.++++|+||||||.++++++.++ +++|+++|++++.
T Consensus 1416 ~~~~~~~~~~~si~~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~---P~~V~~lVlis~~ 1479 (1655)
T PLN02980 1416 HAKETQTEPTLSVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRF---SDKIEGAVIISGS 1479 (1655)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhC---hHhhCEEEEECCC
Confidence 12344444444444444567999999999999999999997 8999999998753
No 59
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.36 E-value=7.4e-12 Score=108.60 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHH--------hCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC--
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALD--------KERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD-- 162 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~--------~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~-- 162 (224)
.+.+||||||.+++.... +.++..+. ...++++++||......+....+.+..+-+.+.++++.+.+
T Consensus 3 ~g~pVlFIhG~~Gs~~q~---rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~~q~~~~~~~i~~i~~~~~~ 79 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQV---RSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQRQAEFLAEAIKYILELYKS 79 (225)
T ss_pred CCCEEEEECcCCCCHhHH---HHHHHHHhhhhhhccCccceeEEEeccCccccccccccHHHHHHHHHHHHHHHHHhhhh
Confidence 467999999998765332 23443331 22588999998654433322345566666777777776544
Q ss_pred ---CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 163 ---NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 163 ---~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+.++|+||||||||.++..++......++.|+++|.++.+
T Consensus 80 ~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 80 NRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred ccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 6789999999999999999887653335689999998743
No 60
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.33 E-value=1.1e-11 Score=104.97 Aligned_cols=106 Identities=16% Similarity=0.048 Sum_probs=75.4
Q ss_pred CCCceEEEECCCCCCCCChhcH--HHHHHHHHhCCcEEEEEcccCCCC---CC---CC---CChhhhHHHHHHHHHHHHh
Q 027344 92 DYQQQVIFIGGLTDGFFATEYL--EPLAIALDKERWSLVQFLMTSSYT---GY---GT---SSLQQDAMEIDQLISYLIN 160 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~--~~La~~L~~~Gy~Vi~~Dlrss~~---G~---G~---Ssl~~~~eDL~~lIe~L~~ 160 (224)
+..|+||++||.+++.. .+. ..+.+.+.+.||.|+.+|+++... .+ .. .....+..|+.++++++.+
T Consensus 11 ~~~P~vv~lHG~~~~~~--~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 88 (212)
T TIGR01840 11 GPRALVLALHGCGQTAS--AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKA 88 (212)
T ss_pred CCCCEEEEeCCCCCCHH--HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHH
Confidence 35789999999886431 221 124555567899999999864321 00 00 0112467889999999987
Q ss_pred hC--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 161 KD--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 161 ~~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++ +.++|+|+||||||.+++.++.++ ++.+.+++.+++.
T Consensus 89 ~~~id~~~i~l~G~S~Gg~~a~~~a~~~---p~~~~~~~~~~g~ 129 (212)
T TIGR01840 89 NYSIDPNRVYVTGLSAGGGMTAVLGCTY---PDVFAGGASNAGL 129 (212)
T ss_pred hcCcChhheEEEEECHHHHHHHHHHHhC---chhheEEEeecCC
Confidence 64 346899999999999999999987 8889998776644
No 61
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.31 E-value=4.1e-11 Score=104.10 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=82.1
Q ss_pred ceEEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-------hhhhHHHHHHHHH
Q 027344 84 VQVAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-------LQQDAMEIDQLIS 156 (224)
Q Consensus 84 ~~v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-------l~~~~eDL~~lIe 156 (224)
..++|+.|+ ..|+|+|||+++. +-++.|+++|+++||.|.++.| +|||... ..+-.+|+.+..+
T Consensus 7 ~pf~f~~G~--~AVLllHGFTGt~---~Dvr~Lgr~L~e~GyTv~aP~y----pGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 7 KPFTFEGGN--RAVLLLHGFTGTP---RDVRMLGRYLNENGYTVYAPRY----PGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred CCeeeccCC--EEEEEEeccCCCc---HHHHHHHHHHHHCCceEecCCC----CCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 345666553 7899999999865 4456789999999999999997 5888742 2344678888888
Q ss_pred HHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 157 YLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 157 ~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+|.+ .+.+.|.++|-||||..++..+.++ .++++|.+++.
T Consensus 78 ~L~~-~gy~eI~v~GlSmGGv~alkla~~~-----p~K~iv~m~a~ 117 (243)
T COG1647 78 DLKE-AGYDEIAVVGLSMGGVFALKLAYHY-----PPKKIVPMCAP 117 (243)
T ss_pred HHHH-cCCCeEEEEeecchhHHHHHHHhhC-----CccceeeecCC
Confidence 8874 3567899999999999999999887 48888876654
No 62
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.30 E-value=2.5e-11 Score=121.58 Aligned_cols=101 Identities=23% Similarity=0.165 Sum_probs=74.6
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC------------------------------C
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS------------------------------S 143 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S------------------------------s 143 (224)
.|+|||+||++++. ..+..+++.|.++||+|+++|++ |||.+ .
T Consensus 449 ~P~VVllHG~~g~~---~~~~~lA~~La~~Gy~VIaiDlp----GHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn 521 (792)
T TIGR03502 449 WPVVIYQHGITGAK---ENALAFAGTLAAAGVATIAIDHP----LHGARSFDANASGVNATNANVLAYMNLASLLVARDN 521 (792)
T ss_pred CcEEEEeCCCCCCH---HHHHHHHHHHHhCCcEEEEeCCC----CCCccccccccccccccccCccceeccccccccccC
Confidence 35899999999753 34557899998899999999996 44443 2
Q ss_pred hhhhHHHHHHHHHHHH------hh------CCCCcEEEEEEchhHHHHHHHHHHhcc---cc-----cccceEEEEcc
Q 027344 144 LQQDAMEIDQLISYLI------NK------DNSEGVVLLGHSTGCQDIVHYMRANAA---CS-----RAVRAAIFQVL 201 (224)
Q Consensus 144 l~~~~eDL~~lIe~L~------~~------~~~~~VvLvGHSmGG~val~ya~~~~~---~~-----~~V~gvIL~aP 201 (224)
+.+.+.|+..+.+.+. ++ ++..+|+++||||||.+++.|+..... .+ .++..+.|..|
T Consensus 522 ~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~an~~~~~~~~~~l~~~~~a~l~~p 599 (792)
T TIGR03502 522 LRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYANTPLGSPTADALYAVNAASLQNP 599 (792)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhcCccccCCccccccccceeeeecC
Confidence 3456788888888887 22 456799999999999999999986411 01 15567777654
No 63
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.28 E-value=1.1e-11 Score=113.18 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=75.5
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhC-CcEEEEEcccCCCCCCCCC-Chhh----hHHHHHHHHHHHHhhCCCC
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKE-RWSLVQFLMTSSYTGYGTS-SLQQ----DAMEIDQLISYLINKDNSE 165 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~-Gy~Vi~~Dlrss~~G~G~S-sl~~----~~eDL~~lIe~L~~~~~~~ 165 (224)
..+++||++|||+++.. .|+++...|.+. |++|+++|+ .|||.+ ..+. ++.+....++.+-.+...+
T Consensus 56 ~~~~pvlllHGF~~~~~---~w~~~~~~L~~~~~~~v~aiDl----~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~ 128 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGASSF---SWRRVVPLLSKAKGLRVLAIDL----PGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVE 128 (326)
T ss_pred CCCCcEEEeccccCCcc---cHhhhccccccccceEEEEEec----CCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCc
Confidence 36899999999998653 344455555544 599999998 478843 3322 3556666666555556667
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccccceEE---EEccc
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRAVRAAI---FQVLT 202 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~V~gvI---L~aPv 202 (224)
+++|+||||||.+++.++..+ ++.|+++| +++|.
T Consensus 129 ~~~lvghS~Gg~va~~~Aa~~---P~~V~~lv~~~~~~~~ 165 (326)
T KOG1454|consen 129 PVSLVGHSLGGIVALKAAAYY---PETVDSLVLLDLLGPP 165 (326)
T ss_pred ceEEEEeCcHHHHHHHHHHhC---cccccceeeecccccc
Confidence 899999999999999999998 99999999 66654
No 64
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.28 E-value=5.7e-11 Score=114.94 Aligned_cols=126 Identities=9% Similarity=0.072 Sum_probs=87.7
Q ss_pred cccEEEEeCCCCceEEEeeCC---CCceEEEECCCCCCCCChhcH----HHHHHHHHhCCcEEEEEcccCCCCCCCCC--
Q 027344 72 FRGVLFKYGPKPVQVAFKTGD---YQQQVIFIGGLTDGFFATEYL----EPLAIALDKERWSLVQFLMTSSYTGYGTS-- 142 (224)
Q Consensus 72 ~~g~l~~y~~~~~~v~y~~g~---~~~~IVfVHGlg~~~~~~~y~----~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-- 142 (224)
-+|+++.=.+.-..++|.... .+++||||||+.... +.+. +.++++|.++||+|+.+|++ |+|.+
T Consensus 163 Tpg~VV~~~~~~eLi~Y~P~t~~~~~~PlLiVp~~i~k~--yilDL~p~~Slv~~L~~qGf~V~~iDwr----gpg~s~~ 236 (532)
T TIGR01838 163 TPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWINKY--YILDLRPQNSLVRWLVEQGHTVFVISWR----NPDASQA 236 (532)
T ss_pred CCCeEEEECCcEEEEEeCCCCCcCCCCcEEEECcccccc--eeeecccchHHHHHHHHCCcEEEEEECC----CCCcccc
Confidence 344444444444445665432 468999999987432 1111 35889999999999999996 44433
Q ss_pred --ChhhhH-HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHH----HHHHhcccccccceEEEEccccCh
Q 027344 143 --SLQQDA-MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVH----YMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 143 --sl~~~~-eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~----ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
++++++ +++.+.++++++..+.++|+|+||||||.++.. |+..+ .+++|+++|+++...|.
T Consensus 237 ~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~--~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 237 DKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARG--DDKRIKSATFFTTLLDF 304 (532)
T ss_pred cCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhC--CCCccceEEEEecCcCC
Confidence 344555 458899999988788899999999999998632 33332 26789999999987663
No 65
>PLN02872 triacylglycerol lipase
Probab=99.28 E-value=4.3e-12 Score=118.56 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=77.2
Q ss_pred CCceEEEECCCCCCCCCh---hcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC------------ChhhhH-HHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFAT---EYLEPLAIALDKERWSLVQFLMTSSYTGYGTS------------SLQQDA-MEIDQLIS 156 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~---~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S------------sl~~~~-eDL~~lIe 156 (224)
.+++|+|+||+..+...+ .....++..|.++||+|+.+|+|+...++|.. ++++.+ +|+.++++
T Consensus 73 ~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id 152 (395)
T PLN02872 73 RGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIH 152 (395)
T ss_pred CCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHH
Confidence 367999999996432211 11234777788899999999998653333321 223334 79999999
Q ss_pred HHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 157 YLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 157 ~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
++++.. .++++++||||||.+++.++.+. ...++|+.+|+++|+.
T Consensus 153 ~i~~~~-~~~v~~VGhS~Gg~~~~~~~~~p-~~~~~v~~~~~l~P~~ 197 (395)
T PLN02872 153 YVYSIT-NSKIFIVGHSQGTIMSLAALTQP-NVVEMVEAAALLCPIS 197 (395)
T ss_pred HHHhcc-CCceEEEEECHHHHHHHHHhhCh-HHHHHHHHHHHhcchh
Confidence 998643 47899999999999998666431 2235799999999984
No 66
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.28 E-value=1.2e-10 Score=102.76 Aligned_cols=108 Identities=14% Similarity=0.040 Sum_probs=68.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-------------h-----------hhhH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-------------L-----------QQDA 148 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-------------l-----------~~~~ 148 (224)
..|+|+|+||++++.........+...+.+.||.|+.+|.. .+|+|.+. + ....
T Consensus 41 ~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~--~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~ 118 (275)
T TIGR02821 41 PVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTS--PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMY 118 (275)
T ss_pred CCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCC--CCcCCCCCCcccccccCCccccccCCcCcccccchHH
Confidence 46899999999865322222222333344579999999973 11222110 0 0112
Q ss_pred HHH-HHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 149 MEI-DQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 149 eDL-~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
+.+ +++++.+.++ .+.++++|+||||||.+++.++.++ ++.++++|+++|+.+.
T Consensus 119 ~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~---p~~~~~~~~~~~~~~~ 175 (275)
T TIGR02821 119 SYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKN---PDRFKSVSAFAPIVAP 175 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhC---cccceEEEEECCccCc
Confidence 222 2222223322 3457899999999999999999997 8999999999998664
No 67
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.27 E-value=1.3e-10 Score=106.12 Aligned_cols=119 Identities=19% Similarity=0.249 Sum_probs=89.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC---ChhhhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS---SLQQDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S---sl~~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
.+|.||++||+.++.+. +|...|++++.++||.|+.+|+|++..---++ ......+|++.++++++++.+..++..
T Consensus 74 ~~P~vVl~HGL~G~s~s-~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~a 152 (345)
T COG0429 74 KKPLVVLFHGLEGSSNS-PYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYA 152 (345)
T ss_pred CCceEEEEeccCCCCcC-HHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCCceEE
Confidence 46799999999988665 59999999999999999999998443211111 124567999999999999888999999
Q ss_pred EEEchhHHHHHHHHHHhcccccccceEEEEccccChHHHHHHHH
Q 027344 170 LGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLI 213 (224)
Q Consensus 170 vGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~ 213 (224)
+|.|+||.....|+.+.. .+-++++.+.++-+.|.+.......
T Consensus 153 vG~SLGgnmLa~ylgeeg-~d~~~~aa~~vs~P~Dl~~~~~~l~ 195 (345)
T COG0429 153 VGFSLGGNMLANYLGEEG-DDLPLDAAVAVSAPFDLEACAYRLD 195 (345)
T ss_pred EEecccHHHHHHHHHhhc-cCcccceeeeeeCHHHHHHHHHHhc
Confidence 999999977778777763 3445566655555556655554433
No 68
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.25 E-value=5.1e-11 Score=95.65 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=68.3
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-----hhhhHHHHHHHHHHHHhhCCCCcEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-----LQQDAMEIDQLISYLINKDNSEGVV 168 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-----l~~~~eDL~~lIe~L~~~~~~~~Vv 168 (224)
+++|+|+||+......+.........+..+ |+|+.+|+| |+|.+. ....++|+..+++ +.+.++++
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~----g~g~s~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 91 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLR----GHGRSDPAGYSLSAYADDLAALLD----ALGLEKVV 91 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEeccc----CCCCCCcccccHHHHHHHHHHHHH----HhCCCceE
Confidence 569999999986543222210111111112 999999985 777764 1222455555555 34456699
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
|+||||||.+++.++.++ +++++++|++++...
T Consensus 92 l~G~S~Gg~~~~~~~~~~---p~~~~~~v~~~~~~~ 124 (282)
T COG0596 92 LVGHSMGGAVALALALRH---PDRVRGLVLIGPAPP 124 (282)
T ss_pred EEEecccHHHHHHHHHhc---chhhheeeEecCCCC
Confidence 999999999999999997 889999999997644
No 69
>PLN02442 S-formylglutathione hydrolase
Probab=99.22 E-value=1.9e-10 Score=102.27 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=75.2
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC-------C----CCCCC-------------C-hhhh
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY-------T----GYGTS-------------S-LQQD 147 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-------~----G~G~S-------------s-l~~~ 147 (224)
..|+|+|+||++++.........+.+.+...|+.|+.+|....+ . +.|.+ . ....
T Consensus 46 ~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (283)
T PLN02442 46 KVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYV 125 (283)
T ss_pred CCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhH
Confidence 56899999998754311112233556677789999999963211 0 11111 0 0113
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
.+|+..+++...+..+.++++|+||||||..++.++.++ ++.++++++.+|+.|+
T Consensus 126 ~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~---p~~~~~~~~~~~~~~~ 180 (283)
T PLN02442 126 VKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKN---PDKYKSVSAFAPIANP 180 (283)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhC---chhEEEEEEECCccCc
Confidence 455665666554445678899999999999999999987 8999999999999764
No 70
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.22 E-value=4.5e-11 Score=98.34 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=60.6
Q ss_pred cEEEEEcccCCCCCCCCCCh-------hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEE
Q 027344 125 WSLVQFLMTSSYTGYGTSSL-------QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAI 197 (224)
Q Consensus 125 y~Vi~~Dlrss~~G~G~Ssl-------~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvI 197 (224)
|+|+.+|+| |+|.++- .-..+|+.+.+++++++.+.++++++||||||.+++.|+.++ +++|+++|
T Consensus 1 f~vi~~d~r----G~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~---p~~v~~lv 73 (230)
T PF00561_consen 1 FDVILFDLR----GFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQY---PERVKKLV 73 (230)
T ss_dssp EEEEEEECT----TSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHS---GGGEEEEE
T ss_pred CEEEEEeCC----CCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHC---chhhcCcE
Confidence 789999996 7777662 123678888888888777888899999999999999999998 89999999
Q ss_pred EEccc
Q 027344 198 FQVLT 202 (224)
Q Consensus 198 L~aPv 202 (224)
+++++
T Consensus 74 l~~~~ 78 (230)
T PF00561_consen 74 LISPP 78 (230)
T ss_dssp EESES
T ss_pred EEeee
Confidence 99996
No 71
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.21 E-value=8.8e-11 Score=97.91 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=75.7
Q ss_pred EEEECCCCCCCCChhcHHHHHHHHHh-CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh-----CCCCcEEEE
Q 027344 97 VIFIGGLTDGFFATEYLEPLAIALDK-ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK-----DNSEGVVLL 170 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~La~~L~~-~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~-----~~~~~VvLv 170 (224)
||++||=+-..........+++.|.+ .|+.|+.+|||-. ....++..++|+.+++++++++ .+.++|+|+
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~----p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~ 76 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLA----PEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLI 76 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---T----TTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccc----ccccccccccccccceeeeccccccccccccceEEe
Confidence 78999943222222333455666654 8999999999743 3446788899999999999876 667899999
Q ss_pred EEchhHHHHHHHHHHhccc-ccccceEEEEccccCh
Q 027344 171 GHSTGCQDIVHYMRANAAC-SRAVRAAIFQVLTIDF 205 (224)
Q Consensus 171 GHSmGG~val~ya~~~~~~-~~~V~gvIL~aPv~D~ 205 (224)
|+|.||++++.++.+.... ...+++++++.|+.|.
T Consensus 77 G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 77 GDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred ecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 9999999999999875221 2469999999999876
No 72
>PRK10162 acetyl esterase; Provisional
Probab=99.21 E-value=1.6e-10 Score=104.23 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=80.2
Q ss_pred EEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHh-CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh---h
Q 027344 86 VAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDK-ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN---K 161 (224)
Q Consensus 86 v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~-~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~---~ 161 (224)
+++...+..++||++||-+-.......+..+++.|.+ .|+.|+.+|||... ...++..++|+.++++++.+ +
T Consensus 73 ~y~P~~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlap----e~~~p~~~~D~~~a~~~l~~~~~~ 148 (318)
T PRK10162 73 LYYPQPDSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSP----EARFPQAIEEIVAVCCYFHQHAED 148 (318)
T ss_pred EECCCCCCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCC----CCCCCCcHHHHHHHHHHHHHhHHH
Confidence 4333333468999999954221122234456677765 59999999997432 22345568888888888864 2
Q ss_pred C--CCCcEEEEEEchhHHHHHHHHHHhcc---cccccceEEEEccccCh
Q 027344 162 D--NSEGVVLLGHSTGCQDIVHYMRANAA---CSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 162 ~--~~~~VvLvGHSmGG~val~ya~~~~~---~~~~V~gvIL~aPv~D~ 205 (224)
+ +.++|+|+|||+||++++..+.+... .+.+++++|++.|+.|.
T Consensus 149 ~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 149 YGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred hCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCC
Confidence 3 45689999999999999998875421 13579999999998764
No 73
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.20 E-value=2e-10 Score=117.90 Aligned_cols=109 Identities=11% Similarity=0.005 Sum_probs=74.5
Q ss_pred CCceEEEECCCCCCCCChhcHH--HHHHHHHhCCcEEEEEcccCCCCC--CCCCChhhhHHHHHHHHHHHHhhCCCCcEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLE--PLAIALDKERWSLVQFLMTSSYTG--YGTSSLQQDAMEIDQLISYLINKDNSEGVV 168 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~--~La~~L~~~Gy~Vi~~Dlrss~~G--~G~Ssl~~~~eDL~~lIe~L~~~~~~~~Vv 168 (224)
.+++|||||||......++... -+.+.|.++||+|+.+|++.+... +...++.++++++.+.++.+++. ..++++
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~-~~~~v~ 144 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFGSPDKVEGGMERNLADHVVALSEAIDTVKDV-TGRDVH 144 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCCCCChhHcCccCCHHHHHHHHHHHHHHHHHh-hCCceE
Confidence 4689999999986543222211 146788889999999998532211 11124445555555555555433 356899
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
|+||||||.+++.|+..+ .+++|+++|++++..|
T Consensus 145 lvG~s~GG~~a~~~aa~~--~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 145 LVGYSQGGMFCYQAAAYR--RSKDIASIVTFGSPVD 178 (994)
T ss_pred EEEEChhHHHHHHHHHhc--CCCccceEEEEecccc
Confidence 999999999999998754 2568999999887755
No 74
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.19 E-value=8.5e-11 Score=113.42 Aligned_cols=107 Identities=15% Similarity=0.007 Sum_probs=82.3
Q ss_pred CCceEEEECCCCCCCCC-hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-----h-hhhHHHHHHHHHHHHhh-CCC
Q 027344 93 YQQQVIFIGGLTDGFFA-TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-----L-QQDAMEIDQLISYLINK-DNS 164 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~-~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-----l-~~~~eDL~~lIe~L~~~-~~~ 164 (224)
..|+||++||++..... ..+....++.|.++||.|+.+|+| |+|.+. . ...++|+.++|+++.++ ...
T Consensus 21 ~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~R----G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~ 96 (550)
T TIGR00976 21 PVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTR----GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD 96 (550)
T ss_pred CCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEecc----ccccCCCceEecCcccchHHHHHHHHHHhCCCCC
Confidence 56899999999864310 112223456777899999999997 555542 2 56789999999999865 233
Q ss_pred CcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 165 EGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
.+|+++||||||.+++.++..+ +++|+++|..++..|..
T Consensus 97 ~~v~~~G~S~GG~~a~~~a~~~---~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 97 GNVGMLGVSYLAVTQLLAAVLQ---PPALRAIAPQEGVWDLY 135 (550)
T ss_pred CcEEEEEeChHHHHHHHHhccC---CCceeEEeecCcccchh
Confidence 5899999999999999999886 78999999999887754
No 75
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.17 E-value=3.1e-10 Score=101.78 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHH-hCCcEEEEEcccCCCCCCCCCCh--------hhhHHHHHHHHHHHHhhCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALD-KERWSLVQFLMTSSYTGYGTSSL--------QQDAMEIDQLISYLINKDN 163 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~Vi~~Dlrss~~G~G~Ssl--------~~~~eDL~~lIe~L~~~~~ 163 (224)
.+|++++.||.+.+-. -|..++.+|. +...+++++|+| |||.+.. +....|+-++++++..+.+
T Consensus 73 ~gpil~l~HG~G~S~L---SfA~~a~el~s~~~~r~~a~DlR----gHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~ 145 (343)
T KOG2564|consen 73 EGPILLLLHGGGSSAL---SFAIFASELKSKIRCRCLALDLR----GHGETKVENEDDLSLETMSKDFGAVIKELFGELP 145 (343)
T ss_pred CccEEEEeecCcccch---hHHHHHHHHHhhcceeEEEeecc----ccCccccCChhhcCHHHHHHHHHHHHHHHhccCC
Confidence 6789999999885432 2345666554 346788999996 8887643 3357899999998875433
Q ss_pred CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 164 SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 164 ~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
.+|+||||||||.|+.+.+... . -..+.|++.+--|.
T Consensus 146 -~~iilVGHSmGGaIav~~a~~k-~-lpsl~Gl~viDVVE 182 (343)
T KOG2564|consen 146 -PQIILVGHSMGGAIAVHTAASK-T-LPSLAGLVVIDVVE 182 (343)
T ss_pred -CceEEEeccccchhhhhhhhhh-h-chhhhceEEEEEec
Confidence 5699999999999999988775 2 23488988876553
No 76
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.13 E-value=4.4e-10 Score=99.38 Aligned_cols=108 Identities=18% Similarity=0.271 Sum_probs=79.6
Q ss_pred EEEeeCC-CCceEEEECCCCCCCCChhcHHHHHHHHH-hCCcEEEEEcccCCCCCCCCC----ChhhhHHHHHHHHHHHH
Q 027344 86 VAFKTGD-YQQQVIFIGGLTDGFFATEYLEPLAIALD-KERWSLVQFLMTSSYTGYGTS----SLQQDAMEIDQLISYLI 159 (224)
Q Consensus 86 v~y~~g~-~~~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~Vi~~Dlrss~~G~G~S----sl~~~~eDL~~lIe~L~ 159 (224)
++++... ..++|+|.||-.... .+...-+ ..|. .-++.|+.+||+ |+|.+ +..+..+|++++.++|+
T Consensus 51 ~y~~~~~~~~~~lly~hGNa~Dl--gq~~~~~-~~l~~~ln~nv~~~DYS----GyG~S~G~psE~n~y~Di~avye~Lr 123 (258)
T KOG1552|consen 51 MYVRPPEAAHPTLLYSHGNAADL--GQMVELF-KELSIFLNCNVVSYDYS----GYGRSSGKPSERNLYADIKAVYEWLR 123 (258)
T ss_pred EEEcCccccceEEEEcCCcccch--HHHHHHH-HHHhhcccceEEEEecc----cccccCCCcccccchhhHHHHHHHHH
Confidence 4444433 468999999974322 1222211 1221 237999999996 66654 34467999999999999
Q ss_pred hhC-CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 160 NKD-NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 160 ~~~-~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
+.. +.++|+|+|||||....+.++.+. + ++++||.+|+.+-
T Consensus 124 ~~~g~~~~Iil~G~SiGt~~tv~Lasr~---~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 124 NRYGSPERIILYGQSIGTVPTVDLASRY---P--LAAVVLHSPFTSG 165 (258)
T ss_pred hhcCCCceEEEEEecCCchhhhhHhhcC---C--cceEEEeccchhh
Confidence 988 478999999999999999999885 3 9999999998653
No 77
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=99.12 E-value=7.5e-10 Score=96.57 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCCceEEEECCCCCCCCC-hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC----ChhhhHHHHHHHHHHHHhhCCCCc
Q 027344 92 DYQQQVIFIGGLTDGFFA-TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS----SLQQDAMEIDQLISYLINKDNSEG 166 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~-~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S----sl~~~~eDL~~lIe~L~~~~~~~~ 166 (224)
..+.++|||||+.-.+.. ..-..++...+.-.+ .++.+.+++.+.-.+.. ......+++.++++.|.+..+.++
T Consensus 16 ~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~ 94 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPG-VVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKR 94 (233)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc-eEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCce
Confidence 457899999999754321 111223334333233 78888887653321211 122346778888888887667899
Q ss_pred EEEEEEchhHHHHHHHHHHhccc------ccccceEEEEccccChHHHHHHHH
Q 027344 167 VVLLGHSTGCQDIVHYMRANAAC------SRAVRAAIFQVLTIDFEIFVVLLI 213 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~~------~~~V~gvIL~aPv~D~e~~~~~~~ 213 (224)
|.|++||||+.++++.+..-... ..+|+.+||.||-.|.+.+.....
T Consensus 95 I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~~ 147 (233)
T PF05990_consen 95 IHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQLP 147 (233)
T ss_pred EEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHHH
Confidence 99999999999999998874211 237899999999999887766544
No 78
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.08 E-value=2.2e-10 Score=96.34 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=68.6
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCCCCCC-------Ch-hhhHHHHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHH
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTGYGTS-------SL-QQDAMEIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMR 184 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-------sl-~~~~eDL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~ 184 (224)
..+..|.++||.|+.+|+|++. |+|.. .. ..+++|+.+++++|+++ .+.++|.|+|||+||.+++..+.
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~-g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSG-GYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSS-SSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCC-ccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 3456677899999999998653 44431 11 34699999999999875 35679999999999999999999
Q ss_pred HhcccccccceEEEEccccChHH
Q 027344 185 ANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 185 ~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
++ +++++++|..+|+.|...
T Consensus 84 ~~---~~~f~a~v~~~g~~d~~~ 103 (213)
T PF00326_consen 84 QH---PDRFKAAVAGAGVSDLFS 103 (213)
T ss_dssp HT---CCGSSEEEEESE-SSTTC
T ss_pred cc---ceeeeeeeccceecchhc
Confidence 76 899999999999988543
No 79
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.04 E-value=1.3e-09 Score=101.77 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=80.0
Q ss_pred CceEEEeeCC-----CCceEEEECCCCCCCCC----------hhcHHHHH---HHHHhCCcEEEEEcccCC-C-------
Q 027344 83 PVQVAFKTGD-----YQQQVIFIGGLTDGFFA----------TEYLEPLA---IALDKERWSLVQFLMTSS-Y------- 136 (224)
Q Consensus 83 ~~~v~y~~g~-----~~~~IVfVHGlg~~~~~----------~~y~~~La---~~L~~~Gy~Vi~~Dlrss-~------- 136 (224)
..+|+|+.-+ ..++||+.|+++++.|. ..||+.+. ++|.-..|.||++|.-+. +
T Consensus 40 ~~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g 119 (389)
T PRK06765 40 DVQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVI 119 (389)
T ss_pred CceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCC
Confidence 5679999833 24788999999875432 23455553 345566899999998432 1
Q ss_pred --------CCCCCC---Chh-hhHHHHHHHHHHHHhhCCCCcEE-EEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 137 --------TGYGTS---SLQ-QDAMEIDQLISYLINKDNSEGVV-LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 137 --------~G~G~S---sl~-~~~eDL~~lIe~L~~~~~~~~Vv-LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
++.|.+ .++ -.++|+.+.+..+.++.+.+++. |+||||||+++++++.++ |++|+++|+++.
T Consensus 120 ~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~---P~~v~~lv~ia~ 194 (389)
T PRK06765 120 TTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHY---PHMVERMIGVIG 194 (389)
T ss_pred CCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHC---hHhhheEEEEec
Confidence 222321 122 23555555555555556788886 999999999999999998 999999999864
No 80
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.02 E-value=4.2e-09 Score=93.66 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCceEEEeeC-CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh
Q 027344 82 KPVQVAFKTG-DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN 160 (224)
Q Consensus 82 ~~~~v~y~~g-~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~ 160 (224)
++..|+|-.. +.=|+|||+||+.- . ..++..+.+.++..||.|+++|+.. .....-..++++++++++|+.+
T Consensus 4 ~~l~v~~P~~~g~yPVv~f~~G~~~--~-~s~Ys~ll~hvAShGyIVV~~d~~~----~~~~~~~~~~~~~~~vi~Wl~~ 76 (259)
T PF12740_consen 4 KPLLVYYPSSAGTYPVVLFLHGFLL--I-NSWYSQLLEHVASHGYIVVAPDLYS----IGGPDDTDEVASAAEVIDWLAK 76 (259)
T ss_pred CCeEEEecCCCCCcCEEEEeCCcCC--C-HHHHHHHHHHHHhCceEEEEecccc----cCCCCcchhHHHHHHHHHHHHh
Confidence 4455666543 24589999999972 2 3346678899999999999999631 2222334568888888888765
Q ss_pred h----------CCCCcEEEEEEchhHHHHHHHHHHhcc--cccccceEEEEccccC
Q 027344 161 K----------DNSEGVVLLGHSTGCQDIVHYMRANAA--CSRAVRAAIFQVLTID 204 (224)
Q Consensus 161 ~----------~~~~~VvLvGHSmGG~val~ya~~~~~--~~~~V~gvIL~aPv~D 204 (224)
. .+..++.|.|||-||-++...+..+.. ...+++++|++.||..
T Consensus 77 ~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 77 GLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred cchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 2 245689999999999999988887521 1458999999999973
No 81
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.02 E-value=3.3e-09 Score=103.02 Aligned_cols=130 Identities=10% Similarity=0.055 Sum_probs=94.3
Q ss_pred cccEEEEeCCCCceEEEeeC---CCCceEEEECCCCCCCCChhcH----HHHHHHHHhCCcEEEEEcccCCCCCCCCCCh
Q 027344 72 FRGVLFKYGPKPVQVAFKTG---DYQQQVIFIGGLTDGFFATEYL----EPLAIALDKERWSLVQFLMTSSYTGYGTSSL 144 (224)
Q Consensus 72 ~~g~l~~y~~~~~~v~y~~g---~~~~~IVfVHGlg~~~~~~~y~----~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl 144 (224)
-+|+++.-.+.-..++|... ..+.+||+|+.+.-. .+.+. +-|+++|.++||.|+.+|++.....+..-++
T Consensus 190 TPg~VV~~n~l~eLiqY~P~te~v~~~PLLIVPp~INK--~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r~~~l 267 (560)
T TIGR01839 190 TEGAVVFRNEVLELIQYKPITEQQHARPLLVVPPQINK--FYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHREWGL 267 (560)
T ss_pred CCCceeEECCceEEEEeCCCCCCcCCCcEEEechhhhh--hheeecCCcchHHHHHHHcCCeEEEEeCCCCChhhcCCCH
Confidence 34444333333344566542 246799999998632 11111 4578899999999999999754333333467
Q ss_pred hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHH----HHHHhcccc-cccceEEEEccccChH
Q 027344 145 QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVH----YMRANAACS-RAVRAAIFQVLTIDFE 206 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~----ya~~~~~~~-~~V~gvIL~aPv~D~e 206 (224)
+++++.|.++|+.+++..+.++|.|+||+|||.+++. |+.++ + ++|+.+++++.+.|..
T Consensus 268 dDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~---~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 268 STYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALG---QLRKVNSLTYLVSLLDST 331 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcC---CCCceeeEEeeecccccC
Confidence 8889899999999998888899999999999999987 55554 5 4899999998887754
No 82
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.02 E-value=1.3e-09 Score=91.08 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=58.3
Q ss_pred EEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC--CCCcEEEEEEch
Q 027344 97 VIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD--NSEGVVLLGHST 174 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~--~~~~VvLvGHSm 174 (224)
|++|||++++.. ..|+..+.+.|... ++|...++ +.-|+++.++.|.+.. -.++++|||||+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~--------------~~P~~~~W~~~l~~~i~~~~~~~ilVaHSL 64 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDW--------------DNPDLDEWVQALDQAIDAIDEPTILVAHSL 64 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC----------------TS--HHHHHHHHHHCCHC-TTTEEEEEETH
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEecccc--------------CCCCHHHHHHHHHHHHhhcCCCeEEEEeCH
Confidence 688999987642 34566677888766 77776654 1113444555554421 235699999999
Q ss_pred hHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 175 GCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 175 GG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
||..+++|+... ...+|+|++|+||+..
T Consensus 65 Gc~~~l~~l~~~--~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 65 GCLTALRWLAEQ--SQKKVAGALLVAPFDP 92 (171)
T ss_dssp HHHHHHHHHHHT--CCSSEEEEEEES--SC
T ss_pred HHHHHHHHHhhc--ccccccEEEEEcCCCc
Confidence 999999999532 3789999999999854
No 83
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.01 E-value=1.3e-09 Score=94.81 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=55.2
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcE---EEEEcccCCCCCCCCCC------hhhhHHHHHHHHHHHHhhCCC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWS---LVQFLMTSSYTGYGTSS------LQQDAMEIDQLISYLINKDNS 164 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~---Vi~~Dlrss~~G~G~Ss------l~~~~eDL~~lIe~L~~~~~~ 164 (224)
+.+||||||.+++.. . -|..+++.|.++||. |++++|.. +-+... ..+.+.+|+++|+.+++..+.
T Consensus 1 ~~PVVlVHG~~~~~~-~-~w~~~~~~l~~~GY~~~~vya~tyg~---~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TGa 75 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAY-S-NWSTLAPYLKAAGYCDSEVYALTYGS---GNGSPSVQNAHMSCESAKQLRAFIDAVLAYTGA 75 (219)
T ss_dssp S--EEEE--TTTTTC-G-GCCHHHHHHHHTT--CCCEEEE--S----CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT-
T ss_pred CCCEEEECCCCcchh-h-CHHHHHHHHHHcCCCcceeEeccCCC---CCCCCcccccccchhhHHHHHHHHHHHHHhhCC
Confidence 358999999986432 2 234588899999999 79998731 111011 123456899999999887788
Q ss_pred CcEEEEEEchhHHHHHHHHHHh
Q 027344 165 EGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~ 186 (224)
+|-|||||||+.++.+|++..
T Consensus 76 -kVDIVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp --EEEEEETCHHHHHHHHHHHC
T ss_pred -EEEEEEcCCcCHHHHHHHHHc
Confidence 999999999999999998753
No 84
>PRK11460 putative hydrolase; Provisional
Probab=99.01 E-value=5.3e-09 Score=90.42 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=65.1
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCC---CCCC--C-----Ch-------hhhHHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYT---GYGT--S-----SL-------QQDAMEIDQLI 155 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~---G~G~--S-----sl-------~~~~eDL~~lI 155 (224)
.++.|||+||++++. ..+..+++.|.+.++.+..++.++..+ +.|. . .. ....+++.+.+
T Consensus 15 ~~~~vIlLHG~G~~~---~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i 91 (232)
T PRK11460 15 AQQLLLLFHGVGDNP---VAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETV 91 (232)
T ss_pred CCcEEEEEeCCCCCh---HHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHH
Confidence 568999999999764 344568888877665444444443211 1111 0 00 11223344445
Q ss_pred HHHHhhC--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 156 SYLINKD--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 156 e~L~~~~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
+++.++. +.++|+|+||||||.+++.++.++ ++.+.++|..++
T Consensus 92 ~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~---~~~~~~vv~~sg 136 (232)
T PRK11460 92 RYWQQQSGVGASATALIGFSQGAIMALEAVKAE---PGLAGRVIAFSG 136 (232)
T ss_pred HHHHHhcCCChhhEEEEEECHHHHHHHHHHHhC---CCcceEEEEecc
Confidence 5554443 346899999999999999998876 677787877765
No 85
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.96 E-value=3e-09 Score=100.90 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=72.0
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-----ChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHH
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-----SLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMR 184 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-----sl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~ 184 (224)
..|+..+++.|.+.||.+ ..|++ |+|.. ..++.+++++++|+.+.++.+.++|+|+||||||.+++.|+.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~----g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~ 181 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLF----GFGYDFRQSNRLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMS 181 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCcc----cCCCCccccccHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHH
Confidence 468889999999999876 56774 44432 245678999999999988888899999999999999999998
Q ss_pred Hhcc-cccccceEEEEccccC
Q 027344 185 ANAA-CSRAVRAAIFQVLTID 204 (224)
Q Consensus 185 ~~~~-~~~~V~gvIL~aPv~D 204 (224)
.+.. ..+.|+.+|++|++.+
T Consensus 182 ~~p~~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 182 LHSDVFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred HCCHhHHhHhccEEEECCCCC
Confidence 7621 2357899999987655
No 86
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.91 E-value=4.4e-09 Score=77.41 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=44.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhhhHHHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQDAMEIDQLIS 156 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~~~eDL~~lIe 156 (224)
.+.+|+++||++|+ ..+ +..++++|.++||.|+++|+| |||+|. +++.++|+.+++|
T Consensus 15 ~k~~v~i~HG~~eh--~~r-y~~~a~~L~~~G~~V~~~D~r----GhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 15 PKAVVVIVHGFGEH--SGR-YAHLAEFLAEQGYAVFAYDHR----GHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CCEEEEEeCCcHHH--HHH-HHHHHHHHHhCCCEEEEECCC----cCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 47899999999984 444 467999999999999999996 777763 4556777776653
No 87
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=98.91 E-value=9.2e-09 Score=89.57 Aligned_cols=107 Identities=23% Similarity=0.293 Sum_probs=81.4
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC---hhhhHHHHHHHHHHHHhhCCCCcEE
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS---LQQDAMEIDQLISYLINKDNSEGVV 168 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss---l~~~~eDL~~lIe~L~~~~~~~~Vv 168 (224)
++..++|++||+-.+ ....++..+|.+|++.||.++.+|+++.+..-|... +...++||..+++++... +.---+
T Consensus 31 gs~e~vvlcHGfrS~-Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~-nr~v~v 108 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSH-KNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNS-NRVVPV 108 (269)
T ss_pred CCceEEEEeeccccc-cchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhccC-ceEEEE
Confidence 356799999999764 556788899999999999999999975433222211 234689999999999852 212247
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
++|||-||.+++.|+.++ . .|.-+|.++.--|
T Consensus 109 i~gHSkGg~Vvl~ya~K~---~-d~~~viNcsGRyd 140 (269)
T KOG4667|consen 109 ILGHSKGGDVVLLYASKY---H-DIRNVINCSGRYD 140 (269)
T ss_pred EEeecCccHHHHHHHHhh---c-CchheEEcccccc
Confidence 899999999999999997 2 2788888876544
No 88
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.90 E-value=6.8e-09 Score=94.40 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhC-CcEEEEEcccCCCCCCCCC------ChhhhHHHHHHHHHHHHhhCCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKE-RWSLVQFLMTSSYTGYGTS------SLQQDAMEIDQLISYLINKDNSE 165 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~-Gy~Vi~~Dlrss~~G~G~S------sl~~~~eDL~~lIe~L~~~~~~~ 165 (224)
..|++|++||+-++. +-|..+++.|.++ +..|+.+|.| .||.+ +....++|+..+++..+......
T Consensus 51 ~~Pp~i~lHGl~GS~---~Nw~sv~k~Ls~~l~~~v~~vd~R----nHG~Sp~~~~h~~~~ma~dv~~Fi~~v~~~~~~~ 123 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSK---ENWRSVAKNLSRKLGRDVYAVDVR----NHGSSPKITVHNYEAMAEDVKLFIDGVGGSTRLD 123 (315)
T ss_pred CCCceEEecccccCC---CCHHHHHHHhcccccCceEEEecc----cCCCCccccccCHHHHHHHHHHHHHHcccccccC
Confidence 578999999987653 4556677777544 6799999997 45554 24567888999998886544467
Q ss_pred cEEEEEEchhH-HHHHHHHHHhcccccccceEEEE
Q 027344 166 GVVLLGHSTGC-QDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 166 ~VvLvGHSmGG-~val~ya~~~~~~~~~V~gvIL~ 199 (224)
+++|+|||||| ++++.+..++ +..+..+|..
T Consensus 124 ~~~l~GHsmGG~~~~m~~t~~~---p~~~~rliv~ 155 (315)
T KOG2382|consen 124 PVVLLGHSMGGVKVAMAETLKK---PDLIERLIVE 155 (315)
T ss_pred CceecccCcchHHHHHHHHHhc---CcccceeEEE
Confidence 89999999999 5555555554 7778877763
No 89
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.90 E-value=5.3e-09 Score=98.29 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=79.3
Q ss_pred cccccEEEEeCCCCceEEEee--C-CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh--
Q 027344 70 NQFRGVLFKYGPKPVQVAFKT--G-DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-- 144 (224)
Q Consensus 70 ~~~~g~l~~y~~~~~~v~y~~--g-~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-- 144 (224)
.+++...+.|..+....++.- + ++.|+||+++|+- + ....++..+.++|..+|+.++++|.+ |-|.+..
T Consensus 163 ~~i~~v~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlD-s-~qeD~~~l~~~~l~~rGiA~LtvDmP----G~G~s~~~~ 236 (411)
T PF06500_consen 163 YPIEEVEIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLD-S-LQEDLYRLFRDYLAPRGIAMLTVDMP----GQGESPKWP 236 (411)
T ss_dssp SEEEEEEEEETTCEEEEEEEESSSSS-EEEEEEE--TT-S--GGGGHHHHHCCCHHCT-EEEEE--T----TSGGGTTT-
T ss_pred CCcEEEEEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcc-h-hHHHHHHHHHHHHHhCCCEEEEEccC----CCcccccCC
Confidence 346666677776555544443 2 2457888889974 3 33566665667788899999999985 5555421
Q ss_pred -hhhH-HHHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 145 -QQDA-MEIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 145 -~~~~-eDL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
..+. .-..+++++|.+. .+..+|.++|-||||+++++.+.-+ +.||+++|.++|+++
T Consensus 237 l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le---~~RlkavV~~Ga~vh 297 (411)
T PF06500_consen 237 LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALE---DPRLKAVVALGAPVH 297 (411)
T ss_dssp S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHT---TTT-SEEEEES---S
T ss_pred CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhc---ccceeeEeeeCchHh
Confidence 2221 2245677887653 3567999999999999999988765 789999999999754
No 90
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.85 E-value=2.2e-08 Score=89.37 Aligned_cols=111 Identities=10% Similarity=-0.011 Sum_probs=81.2
Q ss_pred CCceEEEECCCCCCCCChhcH-HHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh-----CCCCc
Q 027344 93 YQQQVIFIGGLTDGFFATEYL-EPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK-----DNSEG 166 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~-~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~-----~~~~~ 166 (224)
..|+||++||=+--....+.. ..++..+...||.|+.+|||-.. ...++..++|+.+.+++++++ .+.++
T Consensus 78 ~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaP----e~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~ 153 (312)
T COG0657 78 TAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAP----EHPFPAALEDAYAAYRWLRANAAELGIDPSR 153 (312)
T ss_pred CCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCC----CCCCCchHHHHHHHHHHHHhhhHhhCCCccc
Confidence 468999999943211122222 34555666789999999997432 225677899999999999864 34788
Q ss_pred EEEEEEchhHHHHHHHHHHhcc-cccccceEEEEccccChHH
Q 027344 167 VVLLGHSTGCQDIVHYMRANAA-CSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~-~~~~V~gvIL~aPv~D~e~ 207 (224)
|+|+|||.||++++.++..-.. .....++.+++.|+.|...
T Consensus 154 i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 154 IAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred eEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 9999999999999999888521 1236789999999988764
No 91
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.85 E-value=2.7e-08 Score=84.12 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCC--CCCh---------------hhhHHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYG--TSSL---------------QQDAMEIDQLI 155 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G--~Ssl---------------~~~~eDL~~lI 155 (224)
+++.||++|++.+ + ..+...+++.|.++||.|+.+|+ +.|.+ .... +...+|+.+.+
T Consensus 13 ~~~~Vvv~~d~~G-~--~~~~~~~ad~lA~~Gy~v~~pD~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~ 86 (218)
T PF01738_consen 13 PRPAVVVIHDIFG-L--NPNIRDLADRLAEEGYVVLAPDL---FGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAV 86 (218)
T ss_dssp SEEEEEEE-BTTB-S---HHHHHHHHHHHHTT-EEEEE-C---CCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCC-C--chHHHHHHHHHHhcCCCEEeccc---ccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5789999999764 2 26777899999999999999998 33433 1111 12357788889
Q ss_pred HHHHhhC--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 156 SYLINKD--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 156 e~L~~~~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
++|+++. +.++|.++|.|+||.+++.++.+ ...++++|..=|
T Consensus 87 ~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~----~~~~~a~v~~yg 130 (218)
T PF01738_consen 87 DYLRAQPEVDPGKIGVVGFCWGGKLALLLAAR----DPRVDAAVSFYG 130 (218)
T ss_dssp HHHHCTTTCEEEEEEEEEETHHHHHHHHHHCC----TTTSSEEEEES-
T ss_pred HHHHhccccCCCcEEEEEEecchHHhhhhhhh----ccccceEEEEcC
Confidence 9998653 45799999999999999988765 357888888766
No 92
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.84 E-value=8.5e-08 Score=86.23 Aligned_cols=98 Identities=16% Similarity=0.312 Sum_probs=72.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC----hhhhHHHHHHHHHHHHhhCC-CCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS----LQQDAMEIDQLISYLINKDN-SEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss----l~~~~eDL~~lIe~L~~~~~-~~~V 167 (224)
...+||=+||-.++-....| +...|.+.|.|||..+| ||+|.+. ....-++-...++.|.++.+ .+++
T Consensus 34 ~~gTVv~~hGsPGSH~DFkY---i~~~l~~~~iR~I~iN~----PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~ 106 (297)
T PF06342_consen 34 PLGTVVAFHGSPGSHNDFKY---IRPPLDEAGIRFIGINY----PGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKL 106 (297)
T ss_pred CceeEEEecCCCCCccchhh---hhhHHHHcCeEEEEeCC----CCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCce
Confidence 34589999998876444444 56778899999999998 5777653 12224555556666655443 2579
Q ss_pred EEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+.+|||.||-.++..+..+ ++.|++|++|+
T Consensus 107 i~~gHSrGcenal~la~~~-----~~~g~~lin~~ 136 (297)
T PF06342_consen 107 IFLGHSRGCENALQLAVTH-----PLHGLVLINPP 136 (297)
T ss_pred EEEEeccchHHHHHHHhcC-----ccceEEEecCC
Confidence 9999999999999999886 57799999986
No 93
>PRK10115 protease 2; Provisional
Probab=98.83 E-value=2e-08 Score=99.92 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=86.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhhhHHHHHHHHHHHHhh--C
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQDAMEIDQLISYLINK--D 162 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~~~eDL~~lIe~L~~~--~ 162 (224)
..|+||++||--+... .+.|......|.++||.|+..++|++ .|||+.= -.++++|+.+++++|.++ .
T Consensus 444 ~~P~ll~~hGg~~~~~-~p~f~~~~~~l~~rG~~v~~~n~RGs-~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~ 521 (686)
T PRK10115 444 HNPLLVYGYGSYGASI-DADFSFSRLSLLDRGFVYAIVHVRGG-GELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYG 521 (686)
T ss_pred CCCEEEEEECCCCCCC-CCCccHHHHHHHHCCcEEEEEEcCCC-CccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCC
Confidence 5689999999544322 23333444567789999999999865 3677521 125799999999999875 3
Q ss_pred CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHHH
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEIF 208 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~ 208 (224)
+.+++.+.|-|.||.++...+.++ |+..+++|+..|+.|....
T Consensus 522 d~~rl~i~G~S~GG~l~~~~~~~~---Pdlf~A~v~~vp~~D~~~~ 564 (686)
T PRK10115 522 SPSLCYGMGGSAGGMLMGVAINQR---PELFHGVIAQVPFVDVVTT 564 (686)
T ss_pred ChHHeEEEEECHHHHHHHHHHhcC---hhheeEEEecCCchhHhhh
Confidence 467899999999999999999886 8999999999999997754
No 94
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.83 E-value=2.5e-08 Score=88.49 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHH-hCCcE--EEEEcccCCC----CC----------------CCC-CChhhhH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALD-KERWS--LVQFLMTSSY----TG----------------YGT-SSLQQDA 148 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~--Vi~~Dlrss~----~G----------------~G~-Ssl~~~~ 148 (224)
...+.|||||++++... +..++++|. ++|+. ++..+-...+ .| ..+ .++...+
T Consensus 10 ~~tPTifihG~~gt~~s---~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa 86 (255)
T PF06028_consen 10 STTPTIFIHGYGGTANS---FNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQA 86 (255)
T ss_dssp S-EEEEEE--TTGGCCC---CHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHH
T ss_pred CCCcEEEECCCCCChhH---HHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHH
Confidence 35688999999976543 346778886 55543 2222211000 01 011 1244567
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccc--cccceEEEEccc
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACS--RAVRAAIFQVLT 202 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~--~~V~gvIL~aPv 202 (224)
+-|..++++|+++++.+++-+|||||||.+++.|+.++.... .+|..+|.+|.+
T Consensus 87 ~wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~p 142 (255)
T PF06028_consen 87 KWLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGP 142 (255)
T ss_dssp HHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--
T ss_pred HHHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccc
Confidence 789999999999999999999999999999999999973222 378999998854
No 95
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.82 E-value=1.5e-08 Score=90.36 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=84.2
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh----------
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK---------- 161 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~---------- 161 (224)
+.=|+|+|+||+. ....|+.++...+...||.|+++++- ...+. +-.+++++.+++++||.+.
T Consensus 44 G~yPVilF~HG~~---l~ns~Ys~lL~HIASHGfIVVAPQl~---~~~~p-~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~ 116 (307)
T PF07224_consen 44 GTYPVILFLHGFN---LYNSFYSQLLAHIASHGFIVVAPQLY---TLFPP-DGQDEIKSAASVINWLPEGLQHVLPENVE 116 (307)
T ss_pred CCccEEEEeechh---hhhHHHHHHHHHHhhcCeEEEechhh---cccCC-CchHHHHHHHHHHHHHHhhhhhhCCCCcc
Confidence 3458999999985 44678888989999999999999983 23332 3356788999999999752
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
-+..+++|+|||.||..+...+..+. ..-++.++|.+-||....
T Consensus 117 ~nl~klal~GHSrGGktAFAlALg~a-~~lkfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 117 ANLSKLALSGHSRGGKTAFALALGYA-TSLKFSALIGIDPVAGTS 160 (307)
T ss_pred cccceEEEeecCCccHHHHHHHhccc-ccCchhheecccccCCCC
Confidence 25679999999999999999988773 456888999999985533
No 96
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.82 E-value=3.4e-08 Score=91.36 Aligned_cols=137 Identities=17% Similarity=0.176 Sum_probs=93.4
Q ss_pred CCCccccccccccEEEEeCC--CCceEEEeeCC-----CCceEEEECCCCCCCCChh--------cHHHHH---HHHHhC
Q 027344 62 GGPVVMGKNQFRGVLFKYGP--KPVQVAFKTGD-----YQQQVIFIGGLTDGFFATE--------YLEPLA---IALDKE 123 (224)
Q Consensus 62 ~~p~~m~~~~~~g~l~~y~~--~~~~v~y~~g~-----~~~~IVfVHGlg~~~~~~~--------y~~~La---~~L~~~ 123 (224)
..++++.-..+++-++.-+. ....|+|++.+ ...+|+++|+++++.|... ||+.+. +.+.-.
T Consensus 12 ~~~~~~~~~~~~~l~le~G~~l~~~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~ 91 (368)
T COG2021 12 MAVGPVGLFAIGPLTLESGGVLSDARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTE 91 (368)
T ss_pred ccCCccceeccCceeecCCCcccCcEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCcc
Confidence 33444444555555555555 45568999732 3568999999998765544 777765 244455
Q ss_pred CcEEEEEccc-CCCCCCCCC-----------Chh-hhHHHHHHHHHHHHhhCCCCcEE-EEEEchhHHHHHHHHHHhccc
Q 027344 124 RWSLVQFLMT-SSYTGYGTS-----------SLQ-QDAMEIDQLISYLINKDNSEGVV-LLGHSTGCQDIVHYMRANAAC 189 (224)
Q Consensus 124 Gy~Vi~~Dlr-ss~~G~G~S-----------sl~-~~~eDL~~lIe~L~~~~~~~~Vv-LvGHSmGG~val~ya~~~~~~ 189 (224)
.|.||+.|-- +++.--|-+ .++ -.++|+-.+-+.|.+.++.+++. +||-||||+.+++++..+
T Consensus 92 r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~y--- 168 (368)
T COG2021 92 RFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRY--- 168 (368)
T ss_pred ceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhC---
Confidence 7999998762 221111111 122 13667666667788888999987 999999999999999998
Q ss_pred ccccceEEEEcc
Q 027344 190 SRAVRAAIFQVL 201 (224)
Q Consensus 190 ~~~V~gvIL~aP 201 (224)
|++|+.+|.++.
T Consensus 169 Pd~V~~~i~ia~ 180 (368)
T COG2021 169 PDRVRRAIPIAT 180 (368)
T ss_pred hHHHhhhheecc
Confidence 999999988764
No 97
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.79 E-value=6.6e-08 Score=89.31 Aligned_cols=119 Identities=20% Similarity=0.306 Sum_probs=83.9
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcE--EEEEcccCCCC--CCCC--CChhhhHHHHHHHHHHHHhhCCCCc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWS--LVQFLMTSSYT--GYGT--SSLQQDAMEIDQLISYLINKDNSEG 166 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~--Vi~~Dlrss~~--G~G~--Ssl~~~~eDL~~lIe~L~~~~~~~~ 166 (224)
.+.++|||||+.-++.. -..++++-....|+. .+.+-+++.+. ||.. .+......+|+.++++|.++.+.++
T Consensus 115 ~k~vlvFvHGfNntf~d--av~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~ 192 (377)
T COG4782 115 AKTVLVFVHGFNNTFED--AVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKR 192 (377)
T ss_pred CCeEEEEEcccCCchhH--HHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCce
Confidence 46799999999765432 223445444444544 44555554433 3332 1223457889999999998878899
Q ss_pred EEEEEEchhHHHHHHHHHHhcc-----cccccceEEEEccccChHHHHHHHH
Q 027344 167 VVLLGHSTGCQDIVHYMRANAA-----CSRAVRAAIFQVLTIDFEIFVVLLI 213 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~-----~~~~V~gvIL~aPv~D~e~~~~~~~ 213 (224)
|.|++||||..++++.+++-.. .+.+|+.+||-+|=.|.+.+..+.+
T Consensus 193 I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF~~Q~~ 244 (377)
T COG4782 193 IYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVFSSQIA 244 (377)
T ss_pred EEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhHHHHHH
Confidence 9999999999999999987421 3568999999999999877766543
No 98
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.77 E-value=9.6e-08 Score=84.75 Aligned_cols=102 Identities=24% Similarity=0.309 Sum_probs=71.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHh---CCcEEEEEcccCCCCCCCCC-------------ChhhhHHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDK---ERWSLVQFLMTSSYTGYGTS-------------SLQQDAMEIDQLISY 157 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~---~Gy~Vi~~Dlrss~~G~G~S-------------sl~~~~eDL~~lIe~ 157 (224)
+..|+||+|-.+- ..|+..+.+.|.+ ..|.|++..+. ||-.. ++++.++--.++++.
T Consensus 2 ~~li~~IPGNPGl---v~fY~~Fl~~L~~~l~~~~~i~~ish~----Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~ 74 (266)
T PF10230_consen 2 RPLIVFIPGNPGL---VEFYEEFLSALYEKLNPQFEILGISHA----GHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKE 74 (266)
T ss_pred cEEEEEECCCCCh---HHHHHHHHHHHHHhCCCCCeeEEecCC----CCcCCcccccccCCCCccCHHHHHHHHHHHHHH
Confidence 5689999997753 4677777777764 48999998774 43221 233334444444444
Q ss_pred HHhhC--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 158 LINKD--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 158 L~~~~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+..+. +..+++|+|||+|+.++++.+.+......+|++++++-|.
T Consensus 75 ~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPT 121 (266)
T PF10230_consen 75 LIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPT 121 (266)
T ss_pred HhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCc
Confidence 44332 5678999999999999999999972224799999999997
No 99
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.77 E-value=1.1e-07 Score=80.03 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=66.1
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-ChhhhHHHHH-HHHHHHHhhCCCCcEEEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-SLQQDAMEID-QLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-sl~~~~eDL~-~lIe~L~~~~~~~~VvLvGH 172 (224)
++|+++|+.+++. ..+..|++.|....+.|+.++++ |++.. .....++++. ..++.+++..+..+++|+||
T Consensus 1 ~~lf~~p~~gG~~---~~y~~la~~l~~~~~~v~~i~~~----~~~~~~~~~~si~~la~~y~~~I~~~~~~gp~~L~G~ 73 (229)
T PF00975_consen 1 RPLFCFPPAGGSA---SSYRPLARALPDDVIGVYGIEYP----GRGDDEPPPDSIEELASRYAEAIRARQPEGPYVLAGW 73 (229)
T ss_dssp -EEEEESSTTCSG---GGGHHHHHHHTTTEEEEEEECST----TSCTTSHEESSHHHHHHHHHHHHHHHTSSSSEEEEEE
T ss_pred CeEEEEcCCccCH---HHHHHHHHhCCCCeEEEEEEecC----CCCCCCCCCCCHHHHHHHHHHHhhhhCCCCCeeehcc
Confidence 3688999987643 34567999997434899999874 44321 1112233322 23444444444459999999
Q ss_pred chhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 173 STGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 173 SmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
|+||.++.+.+++-......|..+|++..
T Consensus 74 S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 74 SFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp THHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred CccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 99999999999885333567999999873
No 100
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.76 E-value=1.7e-08 Score=94.12 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhCCcEE-----EE-EcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHH
Q 027344 112 YLEPLAIALDKERWSL-----VQ-FLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 112 y~~~La~~L~~~Gy~V-----i~-~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
++..|++.|++.||.. .+ +|+|-+.. ..++....|+++||.+.++. .++|+||||||||.++++|+..
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~-----~~~~~~~~lk~~ie~~~~~~-~~kv~li~HSmGgl~~~~fl~~ 139 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA-----ERDEYFTKLKQLIEEAYKKN-GKKVVLIAHSMGGLVARYFLQW 139 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh-----hHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCchHHHHHHHh
Confidence 6889999999988864 22 57753221 44677899999999998766 7899999999999999999998
Q ss_pred hcc---cccccceEEEEccccC
Q 027344 186 NAA---CSRAVRAAIFQVLTID 204 (224)
Q Consensus 186 ~~~---~~~~V~gvIL~aPv~D 204 (224)
... ..+.|+++|.+|++..
T Consensus 140 ~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 140 MPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred ccchhhHHhhhhEEEEeCCCCC
Confidence 621 3568999999997643
No 101
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.75 E-value=6e-08 Score=95.32 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=76.6
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------hhhhHHHHHHHHHHHHhh--CCC
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------LQQDAMEIDQLISYLINK--DNS 164 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------l~~~~eDL~~lIe~L~~~--~~~ 164 (224)
|+||++||-....... .+......|..+||.|+.+++|++ .|||..= -..+.+|+.+.++++.+. .+.
T Consensus 395 P~i~~~hGGP~~~~~~-~~~~~~q~~~~~G~~V~~~n~RGS-~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~ 472 (620)
T COG1506 395 PLIVYIHGGPSAQVGY-SFNPEIQVLASAGYAVLAPNYRGS-TGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDP 472 (620)
T ss_pred CEEEEeCCCCcccccc-ccchhhHHHhcCCeEEEEeCCCCC-CccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcCh
Confidence 7999999965433222 334456678889999999999866 3666531 124689999999976542 345
Q ss_pred CcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 165 EGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
++|.++|||+||..++..+.+. + .++++|.++++.+
T Consensus 473 ~ri~i~G~SyGGymtl~~~~~~---~-~f~a~~~~~~~~~ 508 (620)
T COG1506 473 ERIGITGGSYGGYMTLLAATKT---P-RFKAAVAVAGGVD 508 (620)
T ss_pred HHeEEeccChHHHHHHHHHhcC---c-hhheEEeccCcch
Confidence 6899999999999999988874 4 7888888777544
No 102
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.71 E-value=2.1e-07 Score=78.95 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=60.2
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCc--EEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERW--SLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy--~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
.||++|||..+-..... ..+.+++++.+. .+..+|++ . .....++.+.++|+ +...+.++|||+|
T Consensus 1 ~ilYlHGF~Ssp~S~Ka-~~l~~~~~~~~~~~~~~~p~l~-------~-~p~~a~~~l~~~i~----~~~~~~~~liGSS 67 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKA-QALKQYFAEHGPDIQYPCPDLP-------P-FPEEAIAQLEQLIE----ELKPENVVLIGSS 67 (187)
T ss_pred CeEEecCCCCCCCCHHH-HHHHHHHHHhCCCceEECCCCC-------c-CHHHHHHHHHHHHH----hCCCCCeEEEEEC
Confidence 38999999876544333 346677776653 44554441 1 12233444444444 3344569999999
Q ss_pred hhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 174 TGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 174 mGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
|||..+..++.++ .++. ||++|..++..
T Consensus 68 lGG~~A~~La~~~-----~~~a-vLiNPav~p~~ 95 (187)
T PF05728_consen 68 LGGFYATYLAERY-----GLPA-VLINPAVRPYE 95 (187)
T ss_pred hHHHHHHHHHHHh-----CCCE-EEEcCCCCHHH
Confidence 9999999988876 4444 89999887554
No 103
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.70 E-value=8.3e-08 Score=88.01 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHh---CCcEEEEEcccCC-CCCCCCC--ChhhhHHHHHHHHHHHHhh--CCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDK---ERWSLVQFLMTSS-YTGYGTS--SLQQDAMEIDQLISYLINK--DNS 164 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~---~Gy~Vi~~Dlrss-~~G~G~S--sl~~~~eDL~~lIe~L~~~--~~~ 164 (224)
.+|++|+||||.++.....++..+.++|.+ .++.|+.+|+... ...|... ......+.|..+|+.|.++ .+.
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~~ 149 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNFGVPP 149 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH---G
T ss_pred CCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhcCCCh
Confidence 578999999999875345677777776544 4899999999421 1111110 0112345566666666632 467
Q ss_pred CcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 165 EGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
++|.|||||+|++|+-...+.... ..+|..++.+-|..
T Consensus 150 ~~ihlIGhSLGAHvaG~aG~~~~~-~~ki~rItgLDPAg 187 (331)
T PF00151_consen 150 ENIHLIGHSLGAHVAGFAGKYLKG-GGKIGRITGLDPAG 187 (331)
T ss_dssp GGEEEEEETCHHHHHHHHHHHTTT----SSEEEEES-B-
T ss_pred hHEEEEeeccchhhhhhhhhhccC-cceeeEEEecCccc
Confidence 899999999999999877776521 24888888887753
No 104
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.66 E-value=6.6e-07 Score=81.30 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCC--------------CC--CCC-------------
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTG--------------YG--TSS------------- 143 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G--------------~G--~Ss------------- 143 (224)
.+.+||+|||.+++--+...+..|.+.|.+.||..+.+.++..... -+ ..+
T Consensus 86 ~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (310)
T PF12048_consen 86 PQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQE 165 (310)
T ss_pred CceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccH
Confidence 4679999999998765667788899999999999999887541100 00 000
Q ss_pred ---h----hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHHH-HHHHHhh
Q 027344 144 ---L----QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEIF-VVLLIAS 215 (224)
Q Consensus 144 ---l----~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~-~~~~~~~ 215 (224)
. ....+-|.+++.++.+ .+.++++||||.+|+..++.|+.+. ....++++|+++|-...... ..+.+..
T Consensus 166 ~~~~~~~~~~~~ari~Aa~~~~~~-~~~~~ivlIg~G~gA~~~~~~la~~--~~~~~daLV~I~a~~p~~~~n~~l~~~l 242 (310)
T PF12048_consen 166 AEAREAYEERLFARIEAAIAFAQQ-QGGKNIVLIGHGTGAGWAARYLAEK--PPPMPDALVLINAYWPQPDRNPALAEQL 242 (310)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHh-cCCceEEEEEeChhHHHHHHHHhcC--CCcccCeEEEEeCCCCcchhhhhHHHHh
Confidence 0 1123445566666654 5667799999999999999999996 35679999999987665555 5566665
Q ss_pred hhccccc
Q 027344 216 HNLLLSV 222 (224)
Q Consensus 216 ~n~~~~~ 222 (224)
.++.+-+
T Consensus 243 a~l~iPv 249 (310)
T PF12048_consen 243 AQLKIPV 249 (310)
T ss_pred hccCCCE
Confidence 5554443
No 105
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=4.1e-07 Score=79.51 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=73.6
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCC---CCCCC------------CCChhhhHHHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSS---YTGYG------------TSSLQQDAMEIDQLISYL 158 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss---~~G~G------------~Ssl~~~~eDL~~lIe~L 158 (224)
.|.||++|+..+ . ..+++.++++|+++||.|+++|+=.. ....+ +....+..+|+.+.+++|
T Consensus 27 ~P~VIv~hei~G-l--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L 103 (236)
T COG0412 27 FPGVIVLHEIFG-L--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYL 103 (236)
T ss_pred CCEEEEEecccC-C--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHH
Confidence 389999999864 2 35788999999999999999998210 00111 011135678999999999
Q ss_pred HhhC--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 159 INKD--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 159 ~~~~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
.++- ..++|.++|.||||.+++.++.+. ..|++.|..=
T Consensus 104 ~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~----~~v~a~v~fy 143 (236)
T COG0412 104 ARQPQVDPKRIGVVGFCMGGGLALLAATRA----PEVKAAVAFY 143 (236)
T ss_pred HhCCCCCCceEEEEEEcccHHHHHHhhccc----CCccEEEEec
Confidence 8642 357899999999999999999874 2566666543
No 106
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.59 E-value=3.2e-07 Score=77.93 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCCCceEEEECCCCCCCCChhcHHHHHH-HHHhCCcEEEEEcccCCC----CCC---------CCCC-hhhh-------H
Q 027344 91 GDYQQQVIFIGGLTDGFFATEYLEPLAI-ALDKERWSLVQFLMTSSY----TGY---------GTSS-LQQD-------A 148 (224)
Q Consensus 91 g~~~~~IVfVHGlg~~~~~~~y~~~La~-~L~~~Gy~Vi~~Dlrss~----~G~---------G~Ss-l~~~-------~ 148 (224)
+...++|||+||+|++. ..+..+.+ .+......++.++-+..+ .|+ .... ...+ +
T Consensus 11 ~~~~~lvi~LHG~G~~~---~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 11 GKAKPLVILLHGYGDSE---DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp ST-SEEEEEE--TTS-H---HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCceEEEEECCCCCCc---chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 44678999999998754 33333333 223346777766432110 122 0000 0012 2
Q ss_pred HHHHHHHHHHHh-hCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 149 MEIDQLISYLIN-KDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 149 eDL~~lIe~L~~-~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+-|.++|+...+ ..+.++|+|+|.|.||.++++++.++ ++.+.|+|.+++...
T Consensus 88 ~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~---p~~~~gvv~lsG~~~ 141 (216)
T PF02230_consen 88 ERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRY---PEPLAGVVALSGYLP 141 (216)
T ss_dssp HHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCT---SSTSSEEEEES---T
T ss_pred HHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHc---CcCcCEEEEeecccc
Confidence 334444444332 24567899999999999999999987 889999999987643
No 107
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.56 E-value=2.7e-07 Score=86.05 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=60.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCC------C--CCC----C-------C------CCh--h
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSS------Y--TGY----G-------T------SSL--Q 145 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss------~--~G~----G-------~------Ssl--~ 145 (224)
.-|+|||-||+++.- ..| -.++..|+.+||.|+++|+|-. . .+- . . ... +
T Consensus 99 ~~PvvIFSHGlgg~R--~~y-S~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSR--TSY-SAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp -EEEEEEE--TT--T--TTT-HHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCEEEEeCCCCcch--hhH-HHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 458999999999743 334 4588899999999999999621 0 000 0 0 000 0
Q ss_pred -----------hhHHHHHHHHHHHHh----------------------hCCCCcEEEEEEchhHHHHHHHHHHhcccccc
Q 027344 146 -----------QDAMEIDQLISYLIN----------------------KDNSEGVVLLGHSTGCQDIVHYMRANAACSRA 192 (224)
Q Consensus 146 -----------~~~eDL~~lIe~L~~----------------------~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~ 192 (224)
.-++|+..+++.|.+ +.+..+|.++|||+||..++..+.+ +.+
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~----d~r 251 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQ----DTR 251 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-----TT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhh----ccC
Confidence 014567777776653 1124579999999999999988877 578
Q ss_pred cceEEEEcccc
Q 027344 193 VRAAIFQVLTI 203 (224)
Q Consensus 193 V~gvIL~aPv~ 203 (224)
+++.|++-|+.
T Consensus 252 ~~~~I~LD~W~ 262 (379)
T PF03403_consen 252 FKAGILLDPWM 262 (379)
T ss_dssp --EEEEES---
T ss_pred cceEEEeCCcc
Confidence 99999987753
No 108
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.56 E-value=6.4e-07 Score=76.72 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=76.5
Q ss_pred CCceEEEECC--CCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-hhhHHHHHHHHHHHHhhCCCCcE-E
Q 027344 93 YQQQVIFIGG--LTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-QQDAMEIDQLISYLINKDNSEGV-V 168 (224)
Q Consensus 93 ~~~~IVfVHG--lg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~V-v 168 (224)
..++.|++|= +-++.....-...+++.|.++||.++.+|||+.+..-|..+. -...+|.+++++|++++++..+. .
T Consensus 27 ~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp~s~~~~ 106 (210)
T COG2945 27 AAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHPDSASCW 106 (210)
T ss_pred CCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCCCchhhh
Confidence 4566666654 334445555667799999999999999999864433333222 24689999999999998876665 7
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
|.|.|.|+.|++..+.+. +.+...|-.+|..
T Consensus 107 l~GfSFGa~Ia~~la~r~----~e~~~~is~~p~~ 137 (210)
T COG2945 107 LAGFSFGAYIAMQLAMRR----PEILVFISILPPI 137 (210)
T ss_pred hcccchHHHHHHHHHHhc----ccccceeeccCCC
Confidence 899999999999999874 3444555544443
No 109
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.55 E-value=1.5e-07 Score=88.56 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCCceEEEECCCCCCCC---ChhcHHHHHHHHHhCCcEEEEEcccCCCC-----CCCCC--------Chhh-hHHHHHHH
Q 027344 92 DYQQQVIFIGGLTDGFF---ATEYLEPLAIALDKERWSLVQFLMTSSYT-----GYGTS--------SLQQ-DAMEIDQL 154 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~---~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~-----G~G~S--------sl~~-~~eDL~~l 154 (224)
+.+|+|++.||+-.+.. ....-.-++-.|.++||.|+.-+.|+..- .+..+ ++.+ -..||-+.
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~ 150 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAM 150 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHH
Confidence 57899999999875431 11122457778889999999998875311 11111 1222 36799999
Q ss_pred HHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 155 ISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 155 Ie~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
|+++.+..+.+++..+|||.|+......+.......++|+.++++||+.-.
T Consensus 151 IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~ 201 (403)
T KOG2624|consen 151 IDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFP 201 (403)
T ss_pred HHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhh
Confidence 999998888899999999999999988887753334689999999998633
No 110
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.55 E-value=2.6e-07 Score=84.69 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcE---EEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWS---LVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~---Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
..-+++||||+..+. ..+..+...+.+.||. ++.+++++. .+..+.....+-|...|+.+..+.+.+++.|
T Consensus 58 ~~~pivlVhG~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~ql~~~V~~~l~~~ga~~v~L 131 (336)
T COG1075 58 AKEPIVLVHGLGGGY---GNFLPLDYRLAILGWLTNGVYAFELSGG---DGTYSLAVRGEQLFAYVDEVLAKTGAKKVNL 131 (336)
T ss_pred CCceEEEEccCcCCc---chhhhhhhhhcchHHHhccccccccccc---CCCccccccHHHHHHHHHHHHhhcCCCceEE
Confidence 345999999985432 2334566667777887 888877432 2222334456667777777776777899999
Q ss_pred EEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 170 LGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 170 vGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
+||||||.++..|+... ....+|+.++.++++....
T Consensus 132 igHS~GG~~~ry~~~~~-~~~~~V~~~~tl~tp~~Gt 167 (336)
T COG1075 132 IGHSMGGLDSRYYLGVL-GGANRVASVVTLGTPHHGT 167 (336)
T ss_pred EeecccchhhHHHHhhc-CccceEEEEEEeccCCCCc
Confidence 99999999999777665 2338999999999875433
No 111
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.52 E-value=2.9e-07 Score=80.60 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=80.5
Q ss_pred CCCCceEEEECCCCCCCCChhcHHHHHH-HHHhCCcEEEEEcccCCCCCCCCCC----hhhhHHHHHHHHHHHHhh--CC
Q 027344 91 GDYQQQVIFIGGLTDGFFATEYLEPLAI-ALDKERWSLVQFLMTSSYTGYGTSS----LQQDAMEIDQLISYLINK--DN 163 (224)
Q Consensus 91 g~~~~~IVfVHGlg~~~~~~~y~~~La~-~L~~~Gy~Vi~~Dlrss~~G~G~Ss----l~~~~eDL~~lIe~L~~~--~~ 163 (224)
..++|+++++|+-.++. .+.-++++ ++.+-+..|+.++|| |||++. .....-|-+++++||..+ .+
T Consensus 75 E~S~pTlLyfh~NAGNm---Ghr~~i~~~fy~~l~mnv~ivsYR----GYG~S~GspsE~GL~lDs~avldyl~t~~~~d 147 (300)
T KOG4391|consen 75 ESSRPTLLYFHANAGNM---GHRLPIARVFYVNLKMNVLIVSYR----GYGKSEGSPSEEGLKLDSEAVLDYLMTRPDLD 147 (300)
T ss_pred cCCCceEEEEccCCCcc---cchhhHHHHHHHHcCceEEEEEee----ccccCCCCccccceeccHHHHHHHHhcCccCC
Confidence 34789999999988764 12222333 344568999999986 888763 455678999999999864 45
Q ss_pred CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 164 SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 164 ~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
..++||+|.|.||.++++.+.++ .+++.++|+...+..
T Consensus 148 ktkivlfGrSlGGAvai~lask~---~~ri~~~ivENTF~S 185 (300)
T KOG4391|consen 148 KTKIVLFGRSLGGAVAIHLASKN---SDRISAIIVENTFLS 185 (300)
T ss_pred cceEEEEecccCCeeEEEeeccc---hhheeeeeeechhcc
Confidence 67899999999999999999987 779999999876543
No 112
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.49 E-value=5.5e-07 Score=77.42 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.6
Q ss_pred CcEEEEEEchhHHHHHHHHHHh
Q 027344 165 EGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 165 ~~VvLvGHSmGG~val~ya~~~ 186 (224)
.+|++|||||||.++...+...
T Consensus 78 ~~IsfIgHSLGGli~r~al~~~ 99 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALGLL 99 (217)
T ss_pred ccceEEEecccHHHHHHHHHHh
Confidence 5899999999999998776643
No 113
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.47 E-value=7.3e-07 Score=78.39 Aligned_cols=109 Identities=12% Similarity=0.013 Sum_probs=73.3
Q ss_pred CCceEEEECCCCCCCCChhcHH-------HHHHHHHhCCcEEEEEcccCCCCCCCCC-C-hhhhHHHHHHHHHHHHhhC-
Q 027344 93 YQQQVIFIGGLTDGFFATEYLE-------PLAIALDKERWSLVQFLMTSSYTGYGTS-S-LQQDAMEIDQLISYLINKD- 162 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~-------~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-s-l~~~~eDL~~lIe~L~~~~- 162 (224)
..|+||..|+.+.+........ .+.+.|.++||.|+.+|.|+.+.-.|.. . ..++.+|..++|+++.++-
T Consensus 19 ~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~~~~e~~D~~d~I~W~~~Qpw 98 (272)
T PF02129_consen 19 PFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPMSPNEAQDGYDTIEWIAAQPW 98 (272)
T ss_dssp SEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TTSHHHHHHHHHHHHHHHHCTT
T ss_pred cccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccCChhHHHHHHHHHHHHHhCCC
Confidence 5578888899875321111100 0011277899999999997443333322 1 4568999999999998752
Q ss_pred CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
...+|-++|.|++|...+..+... +..++++|...+..|
T Consensus 99 s~G~VGm~G~SY~G~~q~~~A~~~---~p~LkAi~p~~~~~d 137 (272)
T PF02129_consen 99 SNGKVGMYGISYGGFTQWAAAARR---PPHLKAIVPQSGWSD 137 (272)
T ss_dssp EEEEEEEEEETHHHHHHHHHHTTT----TTEEEEEEESE-SB
T ss_pred CCCeEEeeccCHHHHHHHHHHhcC---CCCceEEEecccCCc
Confidence 234899999999999999888765 899999999988766
No 114
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.46 E-value=7.5e-07 Score=76.05 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=77.4
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchh
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTG 175 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmG 175 (224)
.+||+=|=+ +| ..+-..++++|+++|+.|+.+|-.. --+-.-+-++.+.|++.+|++..++.+.++|+|+|.|+|
T Consensus 4 ~~v~~SGDg-Gw--~~~d~~~a~~l~~~G~~VvGvdsl~--Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFG 78 (192)
T PF06057_consen 4 LAVFFSGDG-GW--RDLDKQIAEALAKQGVPVVGVDSLR--YFWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFG 78 (192)
T ss_pred EEEEEeCCC-Cc--hhhhHHHHHHHHHCCCeEEEechHH--HHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 456665532 22 3466789999999999999998531 123344557789999999999999888999999999999
Q ss_pred HHHHHHHHHHhc-ccccccceEEEEccc
Q 027344 176 CQDIVHYMRANA-ACSRAVRAAIFQVLT 202 (224)
Q Consensus 176 G~val~ya~~~~-~~~~~V~gvIL~aPv 202 (224)
+-++-...++-. ...++|+.++|++|-
T Consensus 79 ADvlP~~~nrLp~~~r~~v~~v~Ll~p~ 106 (192)
T PF06057_consen 79 ADVLPFIYNRLPAALRARVAQVVLLSPS 106 (192)
T ss_pred chhHHHHHhhCCHHHHhheeEEEEeccC
Confidence 977766665531 245799999999984
No 115
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.45 E-value=1.3e-06 Score=90.87 Aligned_cols=98 Identities=14% Similarity=-0.040 Sum_probs=71.0
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-----ChhhhHHHHHHHHHHHHhhCCCCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-----SLQQDAMEIDQLISYLINKDNSEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-----sl~~~~eDL~~lIe~L~~~~~~~~V 167 (224)
.+++|+++||++++. ..|..+++.|. .+++|+.+|++ |++.. ++++.++|+.+.++.+ .+..++
T Consensus 1067 ~~~~l~~lh~~~g~~---~~~~~l~~~l~-~~~~v~~~~~~----g~~~~~~~~~~l~~la~~~~~~i~~~---~~~~p~ 1135 (1296)
T PRK10252 1067 DGPTLFCFHPASGFA---WQFSVLSRYLD-PQWSIYGIQSP----RPDGPMQTATSLDEVCEAHLATLLEQ---QPHGPY 1135 (1296)
T ss_pred CCCCeEEecCCCCch---HHHHHHHHhcC-CCCcEEEEECC----CCCCCCCCCCCHHHHHHHHHHHHHhh---CCCCCE
Confidence 357899999998753 35567888886 57999999985 44432 3444555555555433 234589
Q ss_pred EEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
+|+||||||.++.+++.+....+++|..++++.+
T Consensus 1136 ~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1136 HLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 9999999999999999875334678999999875
No 116
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.45 E-value=9.8e-07 Score=74.42 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=57.4
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEch
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHST 174 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSm 174 (224)
..||+|||+.++. ...|+...-+.|.. .+-+ ++ ..+-...+++= ++++.+++... .++++||+||+
T Consensus 3 ~~~lIVpG~~~Sg-~~HWq~~we~~l~~--a~rv--eq----~~w~~P~~~dW---i~~l~~~v~a~--~~~~vlVAHSL 68 (181)
T COG3545 3 TDVLIVPGYGGSG-PNHWQSRWESALPN--ARRV--EQ----DDWEAPVLDDW---IARLEKEVNAA--EGPVVLVAHSL 68 (181)
T ss_pred ceEEEecCCCCCC-hhHHHHHHHhhCcc--chhc--cc----CCCCCCCHHHH---HHHHHHHHhcc--CCCeEEEEecc
Confidence 4689999998764 23344444444331 2222 22 12222222222 44455555432 34699999999
Q ss_pred hHHHHHHHHHHhcccccccceEEEEccc
Q 027344 175 GCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 175 GG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
||..+++|+.+. ...|+|++|+||+
T Consensus 69 Gc~~v~h~~~~~---~~~V~GalLVApp 93 (181)
T COG3545 69 GCATVAHWAEHI---QRQVAGALLVAPP 93 (181)
T ss_pred cHHHHHHHHHhh---hhccceEEEecCC
Confidence 999999999997 5599999999986
No 117
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=98.44 E-value=1.9e-06 Score=79.46 Aligned_cols=110 Identities=9% Similarity=0.042 Sum_probs=77.4
Q ss_pred CCceEEEECCCCCCC--CChhcHHHHHHHH-HhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh------hCC
Q 027344 93 YQQQVIFIGGLTDGF--FATEYLEPLAIAL-DKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN------KDN 163 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~--~~~~y~~~La~~L-~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~------~~~ 163 (224)
..|+|||+||-|--. ...++++.+..++ .+.+..|+.+|||-.. ...++...+|-.+++.|+.+ ..+
T Consensus 89 ~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAP----Eh~~Pa~y~D~~~Al~w~~~~~~~~~~~D 164 (336)
T KOG1515|consen 89 KLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAP----EHPFPAAYDDGWAALKWVLKNSWLKLGAD 164 (336)
T ss_pred CceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCC----CCCCCccchHHHHHHHHHHHhHHHHhCCC
Confidence 468999999943211 1245556666666 5679999999997542 22344445565555555544 346
Q ss_pred CCcEEEEEEchhHHHHHHHHHHhcc---cccccceEEEEccccChH
Q 027344 164 SEGVVLLGHSTGCQDIVHYMRANAA---CSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 164 ~~~VvLvGHSmGG~val~ya~~~~~---~~~~V~gvIL~aPv~D~e 206 (224)
.++|+|+|=|.||+++.+.+.+... .+.+|+|.||+-|+..-+
T Consensus 165 ~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~ 210 (336)
T KOG1515|consen 165 PSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGT 210 (336)
T ss_pred cccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCC
Confidence 7889999999999999999888642 257999999999985543
No 118
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=98.43 E-value=4.8e-07 Score=88.42 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=64.7
Q ss_pred HHHHHHHHHhCCcEE-----EEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc
Q 027344 113 LEPLAIALDKERWSL-----VQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA 187 (224)
Q Consensus 113 ~~~La~~L~~~Gy~V-----i~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~ 187 (224)
+..|++.|++.||.- ..+|+|-++ ...-..+++...|..+||.+.+..+.+||+|+||||||+++++|+..-.
T Consensus 158 w~kLIe~L~~iGY~~~nL~gAPYDWRls~--~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv~ 235 (642)
T PLN02517 158 WAVLIANLARIGYEEKNMYMAAYDWRLSF--QNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWVE 235 (642)
T ss_pred HHHHHHHHHHcCCCCCceeecccccccCc--cchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhcc
Confidence 488999999999962 223333111 0011236678899999999987777799999999999999999987421
Q ss_pred ------------ccccccceEEEEccc
Q 027344 188 ------------ACSRAVRAAIFQVLT 202 (224)
Q Consensus 188 ------------~~~~~V~gvIL~aPv 202 (224)
...+.|+.+|.+||+
T Consensus 236 ~~~~~gG~gG~~W~dKyI~s~I~Iagp 262 (642)
T PLN02517 236 APAPMGGGGGPGWCAKHIKAVMNIGGP 262 (642)
T ss_pred ccccccCCcchHHHHHHHHHheecccc
Confidence 146789999999875
No 119
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.40 E-value=9.7e-07 Score=83.41 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=71.0
Q ss_pred CCceEEEECCCCC--CCCChhcHHHHHHHHHhC-CcEEEEEcccCCCCCCCCCCh-----hhhHHHHHHHHHHHHhh---
Q 027344 93 YQQQVIFIGGLTD--GFFATEYLEPLAIALDKE-RWSLVQFLMTSSYTGYGTSSL-----QQDAMEIDQLISYLINK--- 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~--~~~~~~y~~~La~~L~~~-Gy~Vi~~Dlrss~~G~G~Ssl-----~~~~eDL~~lIe~L~~~--- 161 (224)
..|+||+|||=+- +.........++. +. ++.|+.++||-...||..... ..-..|..++++++++.
T Consensus 94 ~~pv~v~ihGG~~~~g~~~~~~~~~~~~---~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~ 170 (493)
T cd00312 94 SLPVMVWIHGGGFMFGSGSLYPGDGLAR---EGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAA 170 (493)
T ss_pred CCCEEEEEcCCccccCCCCCCChHHHHh---cCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4689999999321 1111111223332 23 399999999854445543211 12367889999988864
Q ss_pred C--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 162 D--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 162 ~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+ +.++|+|+|||.||..+..++... ..+..++++|++++...
T Consensus 171 fggd~~~v~~~G~SaG~~~~~~~~~~~-~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 171 FGGDPDSVTIFGESAGGASVSLLLLSP-DSKGLFHRAISQSGSAL 214 (493)
T ss_pred hCCCcceEEEEeecHHHHHhhhHhhCc-chhHHHHHHhhhcCCcc
Confidence 2 456899999999999999888764 22457889999876544
No 120
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.39 E-value=1.3e-06 Score=75.99 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=81.8
Q ss_pred EEeCCCCce---EEEeeCCCCceEEEECCC--CCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHH
Q 027344 77 FKYGPKPVQ---VAFKTGDYQQQVIFIGGL--TDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEI 151 (224)
Q Consensus 77 ~~y~~~~~~---v~y~~g~~~~~IVfVHGl--g~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL 151 (224)
.+|++.+.| |.+.+ +.-+.+|||||- .++.. ...+ .++.-+.++||+|..++|.-+..++ .+.+.+.|.
T Consensus 48 l~Yg~~g~q~VDIwg~~-~~~klfIfIHGGYW~~g~r-k~cl-siv~~a~~~gY~vasvgY~l~~q~h---tL~qt~~~~ 121 (270)
T KOG4627|consen 48 LRYGEGGRQLVDIWGST-NQAKLFIFIHGGYWQEGDR-KMCL-SIVGPAVRRGYRVASVGYNLCPQVH---TLEQTMTQF 121 (270)
T ss_pred cccCCCCceEEEEecCC-CCccEEEEEecchhhcCch-hccc-chhhhhhhcCeEEEEeccCcCcccc---cHHHHHHHH
Confidence 347776444 44332 245799999992 12111 1111 1334455689999998763221111 467778888
Q ss_pred HHHHHHHHhhCC-CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 152 DQLISYLINKDN-SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 152 ~~lIe~L~~~~~-~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
-.-++++.+.++ .+++++-|||.|+.++.+.+.+- ...+|.|+||.+.+-|.+.
T Consensus 122 ~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~--r~prI~gl~l~~GvY~l~E 176 (270)
T KOG4627|consen 122 THGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQ--RSPRIWGLILLCGVYDLRE 176 (270)
T ss_pred HHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHh--cCchHHHHHHHhhHhhHHH
Confidence 888888877543 45677889999999999988774 4789999999998866554
No 121
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.39 E-value=3.9e-06 Score=70.58 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=68.2
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC-CCCC-------CCCh-hhhHHHHHHHHHHHHhhCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY-TGYG-------TSSL-QQDAMEIDQLISYLINKDN 163 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-~G~G-------~Ssl-~~~~eDL~~lIe~L~~~~~ 163 (224)
...+||+-||.+.. ....++..++++|..+||.|..|+++.-. +..| ..+. +.....+.+ |++...
T Consensus 13 ~~~tilLaHGAGas-mdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aq----l~~~l~ 87 (213)
T COG3571 13 APVTILLAHGAGAS-MDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQ----LRAGLA 87 (213)
T ss_pred CCEEEEEecCCCCC-CCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHH----HHhccc
Confidence 34578888998865 45667888999999999999999983210 1111 1111 122223333 333333
Q ss_pred CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 164 SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 164 ~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
..++++-||||||-++...+..- ...|+++++++
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade~---~A~i~~L~clg 121 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADEL---QAPIDGLVCLG 121 (213)
T ss_pred CCceeeccccccchHHHHHHHhh---cCCcceEEEec
Confidence 45899999999999998888775 45699999998
No 122
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.37 E-value=2.6e-06 Score=74.19 Aligned_cols=104 Identities=16% Similarity=0.048 Sum_probs=71.1
Q ss_pred CCceEEEECCCCCCCC---ChhcHHHHHHHHHhCCcEEEEEcccCC---CCCCCC--C---ChhhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGFF---ATEYLEPLAIALDKERWSLVQFLMTSS---YTGYGT--S---SLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~---~~~y~~~La~~L~~~Gy~Vi~~Dlrss---~~G~G~--S---sl~~~~eDL~~lIe~L~~~ 161 (224)
..|.||++||.+.+-. ...-+..+++ ++||.|+.++.... ...|-. . .-.++++.|.++|+++.++
T Consensus 15 ~~PLVv~LHG~~~~a~~~~~~s~~~~lAd---~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~ 91 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAEDFAAGSGWNALAD---REGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAAR 91 (220)
T ss_pred CCCEEEEeCCCCCCHHHHHhhcCHHHHhh---cCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhh
Confidence 4589999999986531 0111223554 57999998875311 111110 0 0124677788999999876
Q ss_pred C--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 162 D--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 162 ~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+ +..+|++.|+|.||..+..++..+ ++.+.++...+.+
T Consensus 92 ~~iD~~RVyv~G~S~Gg~ma~~la~~~---pd~faa~a~~sG~ 131 (220)
T PF10503_consen 92 YNIDPSRVYVTGLSNGGMMANVLACAY---PDLFAAVAVVSGV 131 (220)
T ss_pred cccCCCceeeEEECHHHHHHHHHHHhC---CccceEEEeeccc
Confidence 4 567899999999999999999887 9999998776643
No 123
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=76.96 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=63.4
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-----------hhhhHHHHHHHHHHHHhhC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-----------LQQDAMEIDQLISYLINKD 162 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-----------l~~~~eDL~~lIe~L~~~~ 162 (224)
+.-|+.-.+++ ....|+.++|.++.++||.|..+||| |-|.+. .+--..|+.++|+.+++..
T Consensus 30 ~g~~~va~a~G---v~~~fYRrfA~~a~~~Gf~Vlt~dyR----G~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~ 102 (281)
T COG4757 30 SGRLVVAGATG---VGQYFYRRFAAAAAKAGFEVLTFDYR----GIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL 102 (281)
T ss_pred CCcEEecccCC---cchhHhHHHHHHhhccCceEEEEecc----cccCCCccccccCccchhhhhhcchHHHHHHHHhhC
Confidence 33444444443 33467888999999999999999997 444432 2234689999999999878
Q ss_pred CCCcEEEEEEchhHHHHHHHHHH
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~~ 185 (224)
+..+...||||||||+.-.+.+.
T Consensus 103 ~~~P~y~vgHS~GGqa~gL~~~~ 125 (281)
T COG4757 103 PGHPLYFVGHSFGGQALGLLGQH 125 (281)
T ss_pred CCCceEEeeccccceeecccccC
Confidence 88999999999999977655443
No 124
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.33 E-value=1.7e-06 Score=74.01 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCC--cEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 152 DQLISYLINKDNSE--GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 152 ~~lIe~L~~~~~~~--~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++++.++.++++.. +.+|.||||||..++.++.++ |+.+.+++.++|.
T Consensus 100 ~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~---Pd~F~~~~~~S~~ 149 (251)
T PF00756_consen 100 EELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRH---PDLFGAVIAFSGA 149 (251)
T ss_dssp THHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHS---TTTESEEEEESEE
T ss_pred ccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhC---ccccccccccCcc
Confidence 35666666655422 279999999999999999998 9999999999987
No 125
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=2.8e-06 Score=84.92 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=69.8
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHH-------------HHHhCCcEEEEEcccCCCCC-CCCCChhhhHHHHHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAI-------------ALDKERWSLVQFLMTSSYTG-YGTSSLQQDAMEIDQLISYL 158 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~-------------~L~~~Gy~Vi~~Dlrss~~G-~G~Ssl~~~~eDL~~lIe~L 158 (224)
.+-+|+||+|-.++.++.+-+...+. ......|+++++|+.....- ||. .+.+.+|-+.++|+++
T Consensus 88 sGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe~tAm~G~-~l~dQtEYV~dAIk~I 166 (973)
T KOG3724|consen 88 SGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEEFTAMHGH-ILLDQTEYVNDAIKYI 166 (973)
T ss_pred CCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccchhhhhccH-hHHHHHHHHHHHHHHH
Confidence 45689999998877655554443333 12234678888888543332 343 4556666677777776
Q ss_pred Hhh------CC---CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 159 INK------DN---SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 159 ~~~------~~---~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
... +. .+.|+|+||||||.|+...+......+.-|.-+|.++
T Consensus 167 LslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITls 217 (973)
T KOG3724|consen 167 LSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLS 217 (973)
T ss_pred HHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhc
Confidence 542 12 3459999999999999987765433456677777665
No 126
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=98.31 E-value=2.3e-06 Score=81.41 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=73.1
Q ss_pred ECCC--CCCCCC-hhcHHHHHHHHHhCCcE------EEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEE
Q 027344 100 IGGL--TDGFFA-TEYLEPLAIALDKERWS------LVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLL 170 (224)
Q Consensus 100 VHGl--g~~~~~-~~y~~~La~~L~~~Gy~------Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLv 170 (224)
+.|| .+.+.. ..|+..+.+.|..-||. =+.+|+|-++ +-....+++...++..||...+..+.+||+||
T Consensus 110 vpgf~s~~~ld~~y~~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~--~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvli 187 (473)
T KOG2369|consen 110 VPGFESLDYLDPGYWYWHELIENLVGIGYERGKTLFGAPYDWRLSY--HNSEERDQYLSKLKKKIETMYKLNGGKKVVLI 187 (473)
T ss_pred cCCceeeecccchhHHHHHHHHHHHhhCcccCceeeccccchhhcc--CChhHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 6888 333322 34788899999988988 2456776433 11223567789999999999887788999999
Q ss_pred EEchhHHHHHHHHHHhcc-----cccccceEEEEcc
Q 027344 171 GHSTGCQDIVHYMRANAA-----CSRAVRAAIFQVL 201 (224)
Q Consensus 171 GHSmGG~val~ya~~~~~-----~~~~V~gvIL~aP 201 (224)
+|||||+++++|++.+.. +++.|+..|-+++
T Consensus 188 sHSMG~l~~lyFl~w~~~~~~~W~~k~I~sfvnig~ 223 (473)
T KOG2369|consen 188 SHSMGGLYVLYFLKWVEAEGPAWCDKYIKSFVNIGA 223 (473)
T ss_pred ecCCccHHHHHHHhcccccchhHHHHHHHHHHccCc
Confidence 999999999999998622 3456777766654
No 127
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.22 E-value=2.2e-05 Score=74.03 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=84.7
Q ss_pred CceEEEeeCC-----CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC---CCCCCCChhhhHHHHHHH
Q 027344 83 PVQVAFKTGD-----YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY---TGYGTSSLQQDAMEIDQL 154 (224)
Q Consensus 83 ~~~v~y~~g~-----~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~---~G~G~Ssl~~~~eDL~~l 154 (224)
...++|.... .+++||+|.-+.+ +...+.+.+.+.|.+ |+.|+..|+.... ...|.-+++++++-|.++
T Consensus 86 ~~L~~y~~~~~~~~~~~~pvLiV~Pl~g--~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~f~ldDYi~~l~~~ 162 (406)
T TIGR01849 86 CRLIHFKRQGFRAELPGPAVLIVAPMSG--HYATLLRSTVEALLP-DHDVYITDWVNARMVPLSAGKFDLEDYIDYLIEF 162 (406)
T ss_pred eEEEEECCCCcccccCCCcEEEEcCCch--HHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCCCCHHHHHHHHHHH
Confidence 3456665432 1379999999875 445557788999997 9999999996544 234666778888667777
Q ss_pred HHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcc--cccccceEEEEccccChH
Q 027344 155 ISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAA--CSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 155 Ie~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~--~~~~V~gvIL~aPv~D~e 206 (224)
++++ +.+ +.|+|+++||..++.|+..... .+.+|+.++|++.+.|..
T Consensus 163 i~~~----G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 163 IRFL----GPD-IHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHh----CCC-CcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCC
Confidence 7655 344 9999999999998887776522 245799999999888843
No 128
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.1e-06 Score=82.35 Aligned_cols=136 Identities=19% Similarity=0.145 Sum_probs=85.8
Q ss_pred cccccccccEEEEeCCCCceEEEeeCCCCceEEEECCCCC------CCCChhcHHHHHHHHHhCCcEEEEEcccCC-CCC
Q 027344 66 VMGKNQFRGVLFKYGPKPVQVAFKTGDYQQQVIFIGGLTD------GFFATEYLEPLAIALDKERWSLVQFLMTSS-YTG 138 (224)
Q Consensus 66 ~m~~~~~~g~l~~y~~~~~~v~y~~g~~~~~IVfVHGlg~------~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss-~~G 138 (224)
-|...+.++.+..|+.--..=.+..+..-|++++|=|-.+ .+....|++ + ..|+..||.|+.+|-|++ ++|
T Consensus 614 eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR-~-~~LaslGy~Vv~IDnRGS~hRG 691 (867)
T KOG2281|consen 614 EIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLR-F-CRLASLGYVVVFIDNRGSAHRG 691 (867)
T ss_pred hheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhh-h-hhhhhcceEEEEEcCCCccccc
Confidence 4444455555555544111111222334477888855332 234455554 3 457789999999998754 333
Q ss_pred CCC-C----Ch-hhhHHHHHHHHHHHHhhC---CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 139 YGT-S----SL-QQDAMEIDQLISYLINKD---NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 139 ~G~-S----sl-~~~~eDL~~lIe~L~~~~---~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
.-. + .. .-+++|--+-+++|.++. +..+|.+-|+|+||.+.+..+.++ |+..+.+|.=|||.+.+
T Consensus 692 lkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~---P~IfrvAIAGapVT~W~ 765 (867)
T KOG2281|consen 692 LKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQY---PNIFRVAIAGAPVTDWR 765 (867)
T ss_pred hhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcC---cceeeEEeccCcceeee
Confidence 210 0 00 013555555556665553 578999999999999999999998 99999999999998754
No 129
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.18 E-value=2.3e-05 Score=69.84 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=70.2
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-ChhhhHHH-HHHHHHHHHhhCCCCcEEEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-SLQQDAME-IDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-sl~~~~eD-L~~lIe~L~~~~~~~~VvLvGH 172 (224)
++|.++|+.++.. ..+..|+.+|.. -+.|+..+.+ |++.. ......+| ++..++.+++..+.-+++|+||
T Consensus 1 ~pLF~fhp~~G~~---~~~~~L~~~l~~-~~~v~~l~a~----g~~~~~~~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~ 72 (257)
T COG3319 1 PPLFCFHPAGGSV---LAYAPLAAALGP-LLPVYGLQAP----GYGAGEQPFASLDDMAAAYVAAIRRVQPEGPYVLLGW 72 (257)
T ss_pred CCEEEEcCCCCcH---HHHHHHHHHhcc-CceeeccccC----cccccccccCCHHHHHHHHHHHHHHhCCCCCEEEEee
Confidence 4677789977532 456678888875 4899988874 55421 11122333 3344555555556679999999
Q ss_pred chhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 173 STGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 173 SmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
|+||.++.+.+.+-....+.|.-++++-++..
T Consensus 73 S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 73 SLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred ccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 99999999999886445678999988876655
No 130
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.15 E-value=1.4e-05 Score=74.59 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCceEEEECCCCCCCC----ChhcHHHHHHHHHhCCcEEEEEcccCCC-CCCCCCChhhhHHHHHHHHHHHHhhCCCCcE
Q 027344 93 YQQQVIFIGGLTDGFF----ATEYLEPLAIALDKERWSLVQFLMTSSY-TGYGTSSLQQDAMEIDQLISYLINKDNSEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~----~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~V 167 (224)
..|+||++||-|--.. ...++..+-+.|. .-+++.+||.-.- ..+|. .++....++.+..++|.+..+.++|
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~~-~yPtQL~qlv~~Y~~Lv~~~G~~nI 197 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHGH-KYPTQLRQLVATYDYLVESEGNKNI 197 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCCC-cCchHHHHHHHHHHHHHhccCCCeE
Confidence 3589999999542221 1223333445555 4588889985332 11332 4566788888888999866678899
Q ss_pred EEEEEchhHHHHHHHHHHhc--ccccccceEEEEccccChH
Q 027344 168 VLLGHSTGCQDIVHYMRANA--ACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~--~~~~~V~gvIL~aPv~D~e 206 (224)
+|+|-|.||.+++.+++.-. .....-+.+||++|+..+.
T Consensus 198 ~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 198 ILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred EEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 99999999999999877531 1223468999999987654
No 131
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.14 E-value=6.9e-06 Score=78.62 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=72.8
Q ss_pred CCceEEEECCCCC--CCCChhcHHHHHHHHHhCC-cEEEEEcccCCCCCCC-CCChh--------hhHHHHHHHHHHHHh
Q 027344 93 YQQQVIFIGGLTD--GFFATEYLEPLAIALDKER-WSLVQFLMTSSYTGYG-TSSLQ--------QDAMEIDQLISYLIN 160 (224)
Q Consensus 93 ~~~~IVfVHGlg~--~~~~~~y~~~La~~L~~~G-y~Vi~~Dlrss~~G~G-~Ssl~--------~~~eDL~~lIe~L~~ 160 (224)
..|++|+|||=+- +.....+++ - ..|+++| +.|+.++||-..-||= .+.+. --..|+..+++++++
T Consensus 93 ~~PVmV~IHGG~y~~Gs~s~~~yd-g-s~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~ 170 (491)
T COG2272 93 KLPVMVYIHGGGYIMGSGSEPLYD-G-SALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRD 170 (491)
T ss_pred CCcEEEEEeccccccCCCcccccC-h-HHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHHHHHHHHHHHH
Confidence 4699999999331 111222222 2 2456677 9999999985433331 11111 136788899999987
Q ss_pred h---C--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 161 K---D--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 161 ~---~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+ + +.++|.|+|+|.|+..++..+.-. ....-++++|+++|...
T Consensus 171 NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P-~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 171 NIEAFGGDPQNVTLFGESAGAASILTLLAVP-SAKGLFHRAIALSGAAS 218 (491)
T ss_pred HHHHhCCCccceEEeeccchHHHHHHhhcCc-cchHHHHHHHHhCCCCC
Confidence 4 3 456899999999999999988764 34567778888887654
No 132
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.13 E-value=2.7e-05 Score=71.96 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=74.9
Q ss_pred cccEEEEeCCCCce---EEEeeCCCCceEEEECCCCCCCCChhc-----HHHHHHHHHhCCcEEEEEcccCCCCCCCCCC
Q 027344 72 FRGVLFKYGPKPVQ---VAFKTGDYQQQVIFIGGLTDGFFATEY-----LEPLAIALDKERWSLVQFLMTSSYTGYGTSS 143 (224)
Q Consensus 72 ~~g~l~~y~~~~~~---v~y~~g~~~~~IVfVHGlg~~~~~~~y-----~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss 143 (224)
.++....++..... |.+.......-||+.-|-++... .++ ...+.+...+.+..|+.++||+.+---|..+
T Consensus 112 ~kRv~Iq~D~~~IDt~~I~~~~a~~~RWiL~s~GNg~~~E-~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~s 190 (365)
T PF05677_consen 112 VKRVPIQYDGVKIDTMAIHQPEAKPQRWILVSNGNGECYE-NRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPPS 190 (365)
T ss_pred eeeEEEeeCCEEEEEEEeeCCCCCCCcEEEEEcCChHHhh-hhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCCC
Confidence 34555566553222 22212224567888888765321 211 1234445556789999999974433344556
Q ss_pred hhhhHHHHHHHHHHHHhhC---CCCcEEEEEEchhHHHHHHHHHHh
Q 027344 144 LQQDAMEIDQLISYLINKD---NSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 144 l~~~~eDL~~lIe~L~~~~---~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
..+.+.|-.++++||+++. ..++|++.|||+||.+..+.+.++
T Consensus 191 ~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 7888999999999999743 347899999999999999877765
No 133
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=1.3e-05 Score=70.77 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh----CCCCcEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK----DNSEGVV 168 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~----~~~~~Vv 168 (224)
.+..++.+|=.|++. .++....+.|. ..+.++.++++ |+|.---.....||+.+++.+..+ ...++..
T Consensus 6 ~~~~L~cfP~AGGsa---~~fr~W~~~lp-~~iel~avqlP----GR~~r~~ep~~~di~~Lad~la~el~~~~~d~P~a 77 (244)
T COG3208 6 ARLRLFCFPHAGGSA---SLFRSWSRRLP-ADIELLAVQLP----GRGDRFGEPLLTDIESLADELANELLPPLLDAPFA 77 (244)
T ss_pred CCceEEEecCCCCCH---HHHHHHHhhCC-chhheeeecCC----CcccccCCcccccHHHHHHHHHHHhccccCCCCee
Confidence 345566665555443 34455566665 36899999985 554422223344455444444432 2356899
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
|+||||||+++.+.+++.......+.++.+.+
T Consensus 78 lfGHSmGa~lAfEvArrl~~~g~~p~~lfisg 109 (244)
T COG3208 78 LFGHSMGAMLAFEVARRLERAGLPPRALFISG 109 (244)
T ss_pred ecccchhHHHHHHHHHHHHHcCCCcceEEEec
Confidence 99999999999999998632223467776654
No 134
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.10 E-value=5.1e-05 Score=69.36 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCC--------------CC---CCCC------hhhhHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYT--------------GY---GTSS------LQQDAM 149 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~--------------G~---G~Ss------l~~~~e 149 (224)
..|+||.+||.++.. ..+.+.+ .+..+||.|+.+|.|+... || |..+ +...+.
T Consensus 82 ~~Pavv~~hGyg~~~--~~~~~~~--~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~ 157 (320)
T PF05448_consen 82 KLPAVVQFHGYGGRS--GDPFDLL--PWAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYL 157 (320)
T ss_dssp SEEEEEEE--TT--G--GGHHHHH--HHHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHH
T ss_pred CcCEEEEecCCCCCC--CCccccc--ccccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHH
Confidence 457899999998642 2343332 2456899999999974320 11 1111 112367
Q ss_pred HHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc-cChHHHH
Q 027344 150 EIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT-IDFEIFV 209 (224)
Q Consensus 150 DL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv-~D~e~~~ 209 (224)
|.-..+++|... .+.++|.+.|.|.||.+++..+.- .++|++++..-|. +|.+...
T Consensus 158 D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaL----d~rv~~~~~~vP~l~d~~~~~ 216 (320)
T PF05448_consen 158 DAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAAL----DPRVKAAAADVPFLCDFRRAL 216 (320)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH----SST-SEEEEESESSSSHHHHH
T ss_pred HHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHh----CccccEEEecCCCccchhhhh
Confidence 888888888853 456799999999999999998876 5789999999884 6655443
No 135
>COG0400 Predicted esterase [General function prediction only]
Probab=98.10 E-value=2.1e-05 Score=67.87 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCC-C------CCCC--ChhhhH---HHHHHHHHHHHh
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYT-G------YGTS--SLQQDA---MEIDQLISYLIN 160 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~-G------~G~S--sl~~~~---eDL~~lIe~L~~ 160 (224)
..++||++||+|++.+ .++. +.+.+. -++.++.+.=+.... + ++.. +.++.. +.+.+.++.+.+
T Consensus 17 ~~~~iilLHG~Ggde~--~~~~-~~~~~~-P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~ 92 (207)
T COG0400 17 AAPLLILLHGLGGDEL--DLVP-LPELIL-PNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAE 92 (207)
T ss_pred CCcEEEEEecCCCChh--hhhh-hhhhcC-CCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 3568999999996542 3333 333332 356666553211111 1 1111 122223 333344444444
Q ss_pred hCC--CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 161 KDN--SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 161 ~~~--~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
+++ .++++++|+|-|++++++.+.++ +..++++|+.+|....+
T Consensus 93 ~~gi~~~~ii~~GfSqGA~ial~~~l~~---~~~~~~ail~~g~~~~~ 137 (207)
T COG0400 93 EYGIDSSRIILIGFSQGANIALSLGLTL---PGLFAGAILFSGMLPLE 137 (207)
T ss_pred HhCCChhheEEEecChHHHHHHHHHHhC---chhhccchhcCCcCCCC
Confidence 444 48999999999999999999997 88999999998765444
No 136
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.09 E-value=2.3e-05 Score=79.31 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=69.1
Q ss_pred HHHHHHhCCcEEEEEcccCCCCCCCC--CChhhhHHHHHHHHHHHHhhC----------------CCCcEEEEEEchhHH
Q 027344 116 LAIALDKERWSLVQFLMTSSYTGYGT--SSLQQDAMEIDQLISYLINKD----------------NSEGVVLLGHSTGCQ 177 (224)
Q Consensus 116 La~~L~~~Gy~Vi~~Dlrss~~G~G~--Ssl~~~~eDL~~lIe~L~~~~----------------~~~~VvLvGHSmGG~ 177 (224)
+.++|.++||.|+.+|.|+.+.--|. ..-.++.+|..++|++|..+. ...+|.++|.||||.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~ 350 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGT 350 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHH
Confidence 56778889999999999865432232 112567899999999998431 135899999999999
Q ss_pred HHHHHHHHhcccccccceEEEEccccChH
Q 027344 178 DIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 178 val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
+.+..+... ++.++++|..++++|..
T Consensus 351 ~~~~aAa~~---pp~LkAIVp~a~is~~y 376 (767)
T PRK05371 351 LPNAVATTG---VEGLETIIPEAAISSWY 376 (767)
T ss_pred HHHHHHhhC---CCcceEEEeeCCCCcHH
Confidence 999888775 88999999999998753
No 137
>PRK04940 hypothetical protein; Provisional
Probab=98.07 E-value=3.7e-05 Score=65.18 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=54.4
Q ss_pred eEEEECCCCCCCCChhc-HHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEch
Q 027344 96 QVIFIGGLTDGFFATEY-LEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHST 174 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y-~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSm 174 (224)
.||++|||..+-..... ...+. ++ ..+++++ ++ ....-...++-+.++|+.+..+...+++.|||+||
T Consensus 1 ~IlYlHGF~SS~~S~~~Ka~~l~-~~-~p~~~~~--~l-------~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSL 69 (180)
T PRK04940 1 MIIYLHGFDSTSPGNHEKVLQLQ-FI-DPDVRLI--SY-------STLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGL 69 (180)
T ss_pred CEEEeCCCCCCCCccHHHHHhhe-ee-CCCCeEE--EC-------CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeCh
Confidence 38999999865433111 11121 22 2234444 22 11111223444555555433221125799999999
Q ss_pred hHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 175 GCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 175 GG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
||.-+..++.++ .+ .+||+.|..++..
T Consensus 70 GGyyA~~La~~~-----g~-~aVLiNPAv~P~~ 96 (180)
T PRK04940 70 GGYWAERIGFLC-----GI-RQVIFNPNLFPEE 96 (180)
T ss_pred HHHHHHHHHHHH-----CC-CEEEECCCCChHH
Confidence 999999999987 34 5678899888753
No 138
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.05 E-value=2.1e-05 Score=74.23 Aligned_cols=135 Identities=10% Similarity=0.126 Sum_probs=99.5
Q ss_pred ccccEEEEeCCCCceEEEeeCC---CCceEEEECCCCCCC--CChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChh
Q 027344 71 QFRGVLFKYGPKPVQVAFKTGD---YQQQVIFIGGLTDGF--FATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQ 145 (224)
Q Consensus 71 ~~~g~l~~y~~~~~~v~y~~g~---~~~~IVfVHGlg~~~--~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~ 145 (224)
..+|..+.+......+.|+... .+.++++||=+.--+ ..-..-+.++..|.++|..|+.++++..-.+.+.-.++
T Consensus 81 ~tpg~vV~~ndv~~liqy~p~~e~v~~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~e 160 (445)
T COG3243 81 TTPGKVVFRNDVLELIQYKPLTEKVLKRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLE 160 (445)
T ss_pred cCCceEEEeechhhhhccCCCCCccCCCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhhhccHH
Confidence 4667777666665566776543 357889999876432 11112235677888899999999997655556666778
Q ss_pred hhH-HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 146 QDA-MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 146 ~~~-eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
+++ +++.+.|+.+++..+.++|-++||+.||.+...++..+. .++|+.+.+.....|.+.
T Consensus 161 dYi~e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~--~k~I~S~T~lts~~DF~~ 221 (445)
T COG3243 161 DYILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMA--AKRIKSLTLLTSPVDFSH 221 (445)
T ss_pred HHHHHHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhh--hcccccceeeecchhhcc
Confidence 887 889999999998888899999999999999998888762 336999988776666443
No 139
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.02 E-value=3.9e-05 Score=68.35 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=69.3
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCC-c----EEEEEcccCC------CCCC------------CCCChhhhHHHH
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKER-W----SLVQFLMTSS------YTGY------------GTSSLQQDAMEI 151 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~G-y----~Vi~~Dlrss------~~G~------------G~Ssl~~~~eDL 151 (224)
-+.|||||.++.. .-++.+++.|.+.+ + -++.+|--.+ +.-+ ++.+..+...=+
T Consensus 46 iPTIfIhGsgG~a---sS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wl 122 (288)
T COG4814 46 IPTIFIHGSGGTA---SSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWL 122 (288)
T ss_pred cceEEEecCCCCh---hHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHH
Confidence 3679999998754 34556777766544 1 1222222110 0000 122334456678
Q ss_pred HHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcc--cccccceEEEEcc
Q 027344 152 DQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAA--CSRAVRAAIFQVL 201 (224)
Q Consensus 152 ~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~--~~~~V~gvIL~aP 201 (224)
..++.+|.++++..++-+|||||||.-...|+..+.. .-..|+.+|.++.
T Consensus 123 k~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~g 174 (288)
T COG4814 123 KKAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAG 174 (288)
T ss_pred HHHHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecc
Confidence 8999999999999999999999999999999999832 2247888888764
No 140
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.00 E-value=0.00013 Score=68.79 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=62.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcE----EEEEcccCCCCCCC-CCChhhhHHHH-HHHHHHHHhhC----
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWS----LVQFLMTSSYTGYG-TSSLQQDAMEI-DQLISYLINKD---- 162 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~----Vi~~Dlrss~~G~G-~Ssl~~~~eDL-~~lIe~L~~~~---- 162 (224)
..|+|+++||-. +........+.+.|.++|.. ++.+|-.....+.. .....++.+.| ++++-++.+++
T Consensus 208 ~~PvlyllDG~~--w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~ 285 (411)
T PRK10439 208 ERPLAILLDGQF--WAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAPFSD 285 (411)
T ss_pred CCCEEEEEECHH--hhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCCCCC
Confidence 458999999943 21111223345566556633 45565310000000 11122333333 34445554432
Q ss_pred CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+.++.+|.|+||||..+++.+.++ ++.+.+++.++|.
T Consensus 286 d~~~~~IaG~S~GGl~AL~~al~~---Pd~Fg~v~s~Sgs 322 (411)
T PRK10439 286 DADRTVVAGQSFGGLAALYAGLHW---PERFGCVLSQSGS 322 (411)
T ss_pred CccceEEEEEChHHHHHHHHHHhC---cccccEEEEeccc
Confidence 456799999999999999999998 9999999999975
No 141
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.00 E-value=1.8e-05 Score=73.94 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=61.4
Q ss_pred CCceEEEECCCCCCCC---------------ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC------------Chh
Q 027344 93 YQQQVIFIGGLTDGFF---------------ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS------------SLQ 145 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~---------------~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S------------sl~ 145 (224)
+-|.||++||-+++-. ....-..++..|.++||.|+++|.. |||.. +..
T Consensus 114 p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~----g~GER~~~e~~~~~~~~~~~ 189 (390)
T PF12715_consen 114 PFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL----GFGERGDMEGAAQGSNYDCQ 189 (390)
T ss_dssp -EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T----TSGGG-SSCCCTTTTS--HH
T ss_pred CCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc----cccccccccccccccchhHH
Confidence 4578999999765320 0011123678899999999999984 33321 000
Q ss_pred h---------------hHHHHHHHHHHHHh--hCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 146 Q---------------DAMEIDQLISYLIN--KDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 146 ~---------------~~eDL~~lIe~L~~--~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
. .+-|.-.++++|.. +.+.++|.++|+||||..++..+.- .++|++.|..+=+.-.+
T Consensus 190 ~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL----DdRIka~v~~~~l~~~~ 263 (390)
T PF12715_consen 190 ALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL----DDRIKATVANGYLCTTQ 263 (390)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-----TT--EEEEES-B--HH
T ss_pred HHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc----chhhHhHhhhhhhhccc
Confidence 0 12233347888864 3456799999999999998888766 78999999887665443
No 142
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=97.98 E-value=7.3e-06 Score=71.24 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=74.3
Q ss_pred CCceEEEeeCCCC-ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-------hhhHHHHHH
Q 027344 82 KPVQVAFKTGDYQ-QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-------QQDAMEIDQ 153 (224)
Q Consensus 82 ~~~~v~y~~g~~~-~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-------~~~~eDL~~ 153 (224)
+..|+.|-..+.+ .-|+++.|.-++ ..+.|-.+|-..+..-.+.++++|- +|||.|.- +...+|.+.
T Consensus 29 ng~ql~y~~~G~G~~~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDP----pGYG~SrPP~Rkf~~~ff~~Da~~ 103 (277)
T KOG2984|consen 29 NGTQLGYCKYGHGPNYILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDP----PGYGTSRPPERKFEVQFFMKDAEY 103 (277)
T ss_pred cCceeeeeecCCCCceeEeccccccc-ccccCCHHHHhcCCCCceEEEEECC----CCCCCCCCCcccchHHHHHHhHHH
Confidence 4557888775444 467888886543 2234433444333333489999996 59998742 223344444
Q ss_pred HHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 154 LISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 154 lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
.++-.+ ....+++.|+|+|=||..++..+.++ ++.|...|..+.
T Consensus 104 avdLM~-aLk~~~fsvlGWSdGgiTalivAak~---~e~v~rmiiwga 147 (277)
T KOG2984|consen 104 AVDLME-ALKLEPFSVLGWSDGGITALIVAAKG---KEKVNRMIIWGA 147 (277)
T ss_pred HHHHHH-HhCCCCeeEeeecCCCeEEEEeeccC---hhhhhhheeecc
Confidence 444332 23467999999999999999999997 899999988774
No 143
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.9e-05 Score=78.38 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=75.3
Q ss_pred CceEEEECCCCCCC-----CChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC---h-----hhhHHHHHHHHHHHHh
Q 027344 94 QQQVIFIGGLTDGF-----FATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS---L-----QQDAMEIDQLISYLIN 160 (224)
Q Consensus 94 ~~~IVfVHGlg~~~-----~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss---l-----~~~~eDL~~lIe~L~~ 160 (224)
-|.++.+||-.++. ....+-.. .....|+.|+.+|.|++. |+|..- + ..+++|...+++++.+
T Consensus 526 yPllv~~yGGP~sq~v~~~~~~~~~~~---~~s~~g~~v~~vd~RGs~-~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~ 601 (755)
T KOG2100|consen 526 YPLLVVVYGGPGSQSVTSKFSVDWNEV---VVSSRGFAVLQVDGRGSG-GYGWDFRSALPRNLGDVEVKDQIEAVKKVLK 601 (755)
T ss_pred CCEEEEecCCCCcceeeeeEEecHHHH---hhccCCeEEEEEcCCCcC-CcchhHHHHhhhhcCCcchHHHHHHHHHHHh
Confidence 46777788865422 11222221 245789999999998663 555531 1 1368888888888876
Q ss_pred h--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceE-EEEccccChH
Q 027344 161 K--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAA-IFQVLTIDFE 206 (224)
Q Consensus 161 ~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gv-IL~aPv~D~e 206 (224)
. .+.++|.++|+|+||.+++..+.+. ++.+.++ |.++||.|..
T Consensus 602 ~~~iD~~ri~i~GwSyGGy~t~~~l~~~---~~~~fkcgvavaPVtd~~ 647 (755)
T KOG2100|consen 602 LPFIDRSRVAIWGWSYGGYLTLKLLESD---PGDVFKCGVAVAPVTDWL 647 (755)
T ss_pred cccccHHHeEEeccChHHHHHHHHhhhC---cCceEEEEEEecceeeee
Confidence 3 4677999999999999999999886 5566655 9999998854
No 144
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=97.96 E-value=1.3e-05 Score=75.36 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=65.6
Q ss_pred CceEEEECCCCCCC--C-ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCC---CCC---hhhhHHHHHHHHHHHHhh---
Q 027344 94 QQQVIFIGGLTDGF--F-ATEYLEPLAIALDKERWSLVQFLMTSSYTGYG---TSS---LQQDAMEIDQLISYLINK--- 161 (224)
Q Consensus 94 ~~~IVfVHGlg~~~--~-~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G---~Ss---l~~~~eDL~~lIe~L~~~--- 161 (224)
.|++|||||=+-.. . ...|. -...+.+++..||.++||-.--||= ... -..-..|...+++++++.
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~~--~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~ 202 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPYD--GASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAA 202 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGGH--THHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGG
T ss_pred cceEEEeecccccCCCccccccc--ccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhh
Confidence 58999999933211 1 12232 2344556899999999974321221 111 122367899999999874
Q ss_pred CC--CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 162 DN--SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 162 ~~--~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
++ .++|.|+|||.||..+...+... ....-+.++|++++
T Consensus 203 FGGDp~~VTl~G~SAGa~sv~~~l~sp-~~~~LF~raI~~SG 243 (535)
T PF00135_consen 203 FGGDPDNVTLFGQSAGAASVSLLLLSP-SSKGLFHRAILQSG 243 (535)
T ss_dssp GTEEEEEEEEEEETHHHHHHHHHHHGG-GGTTSBSEEEEES-
T ss_pred cccCCcceeeeeecccccccceeeecc-cccccccccccccc
Confidence 33 46799999999999999888875 34578999999986
No 145
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.92 E-value=4.7e-05 Score=71.39 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=65.6
Q ss_pred CceEEEECCCCCCC---CChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--------------hhhhHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGF---FATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--------------LQQDAMEIDQLIS 156 (224)
Q Consensus 94 ~~~IVfVHGlg~~~---~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--------------l~~~~eDL~~lIe 156 (224)
+|++|+++|=+.-. ....++..||++ -|-.++.+.+| -||.|. .++-++|++.+++
T Consensus 29 gpifl~~ggE~~~~~~~~~~~~~~~lA~~---~~a~~v~lEHR----yYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~ 101 (434)
T PF05577_consen 29 GPIFLYIGGEGPIEPFWINNGFMWELAKE---FGALVVALEHR----YYGKSQPFGDLSTENLRYLTSEQALADLAYFIR 101 (434)
T ss_dssp SEEEEEE--SS-HHHHHHH-HHHHHHHHH---HTEEEEEE--T----TSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccchhhhcCChHHHHHHH---cCCcEEEeehh----hhcCCCCccccchhhHHhcCHHHHHHHHHHHHH
Confidence 78889998844311 012233445554 36688888886 677752 3456899999999
Q ss_pred HHHhhC---CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcccc
Q 027344 157 YLINKD---NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTI 203 (224)
Q Consensus 157 ~L~~~~---~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~ 203 (224)
+++++. +..|+|++|-|+||.++..+-.++ |+-|.|.|..+++.
T Consensus 102 ~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~ky---P~~~~ga~ASSapv 148 (434)
T PF05577_consen 102 YVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKY---PHLFDGAWASSAPV 148 (434)
T ss_dssp HHHHHTTTGCC--EEEEEETHHHHHHHHHHHH----TTT-SEEEEET--C
T ss_pred HHHHhhcCCCCCCEEEECCcchhHHHHHHHhhC---CCeeEEEEecccee
Confidence 998654 345899999999999999998888 99999999987653
No 146
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=97.92 E-value=3.6e-05 Score=71.50 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCC------CCCC-----ChhhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTG------YGTS-----SLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G------~G~S-----sl~~~~eDL~~lIe~L~~~ 161 (224)
..|+|++-||.+... .-+..+++.|++.||.|.++|++++..| .|.. .+.+-..||..++.+|.+.
T Consensus 70 ~~PlvvlshG~Gs~~---~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~ 146 (365)
T COG4188 70 LLPLVVLSHGSGSYV---TGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQL 146 (365)
T ss_pred cCCeEEecCCCCCCc---cchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHh
Confidence 357888889998753 3345689999999999999999754221 1111 1124477888888887654
Q ss_pred ---------CCCCcEEEEEEchhHHHHHHHHHH
Q 027344 162 ---------DNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 162 ---------~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
.+..+|.++|||+||.-+++.+..
T Consensus 147 ~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA 179 (365)
T COG4188 147 TASPALAGRLDPQRVGVLGHSFGGYTAMELAGA 179 (365)
T ss_pred hcCcccccccCccceEEEecccccHHHHHhccc
Confidence 356789999999999999887653
No 147
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.92 E-value=0.00015 Score=58.57 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=56.0
Q ss_pred cHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC-hhhhHHHHH-HHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhccc
Q 027344 112 YLEPLAIALDKERWSLVQFLMTSSYTGYGTSS-LQQDAMEID-QLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAAC 189 (224)
Q Consensus 112 y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-l~~~~eDL~-~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~ 189 (224)
.+..++..|. ..+.|+.+|++ |++... .....+++. ..++.+.+..+..+++|+||||||.++...+.+....
T Consensus 14 ~~~~~~~~l~-~~~~v~~~~~~----g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~ 88 (212)
T smart00824 14 EYARLAAALR-GRRDVSALPLP----GFGPGEPLPASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLAHAVAARLEAR 88 (212)
T ss_pred HHHHHHHhcC-CCccEEEecCC----CCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHHHHHHHHHHhC
Confidence 4456787776 47899999974 444321 122233322 2344444444567899999999999999988875333
Q ss_pred ccccceEEEEcc
Q 027344 190 SRAVRAAIFQVL 201 (224)
Q Consensus 190 ~~~V~gvIL~aP 201 (224)
...+.++|++.+
T Consensus 89 ~~~~~~l~~~~~ 100 (212)
T smart00824 89 GIPPAAVVLLDT 100 (212)
T ss_pred CCCCcEEEEEcc
Confidence 567899988764
No 148
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.88 E-value=0.00011 Score=65.27 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChh-hhHHHHHHHHHHHHhhCC----CCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQ-QDAMEIDQLISYLINKDN----SEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~-~~~eDL~~lIe~L~~~~~----~~~V 167 (224)
++.+|-||+|.--+....-.++.|.+.|.++||.|++.-|. .++-.-... +..+..+.+++.|.+..+ .-++
T Consensus 16 P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~---~tfDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~ 92 (250)
T PF07082_consen 16 PKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYV---VTFDHQAIAREVWERFERCLRALQKRGGLDPAYLPV 92 (250)
T ss_pred CCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecC---CCCcHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCe
Confidence 56788899985433334445677889999999999998663 222111111 123344455555554322 2368
Q ss_pred EEEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
+=|||||||-+.+.....+ +..-+|.|+++
T Consensus 93 ~~vGHSlGcklhlLi~s~~---~~~r~gniliS 122 (250)
T PF07082_consen 93 YGVGHSLGCKLHLLIGSLF---DVERAGNILIS 122 (250)
T ss_pred eeeecccchHHHHHHhhhc---cCcccceEEEe
Confidence 8899999999887766554 33346777775
No 149
>PLN02606 palmitoyl-protein thioesterase
Probab=97.70 E-value=0.00043 Score=63.08 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=64.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhC-CcEEEEEcccCCCCCCCC-CCh-hhhHHHHHHHHHHHHh--hCCCCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKE-RWSLVQFLMTSSYTGYGT-SSL-QQDAMEIDQLISYLIN--KDNSEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~-Gy~Vi~~Dlrss~~G~G~-Ssl-~~~~eDL~~lIe~L~~--~~~~~~V 167 (224)
...+||+.||+++..... -+..+.+.+.+. |+-+..+.+ |-+. .++ ...-+.++.+.+.|++ +. .+-+
T Consensus 25 ~~~PvViwHGlgD~~~~~-~~~~~~~~i~~~~~~pg~~v~i-----g~~~~~s~~~~~~~Qv~~vce~l~~~~~L-~~G~ 97 (306)
T PLN02606 25 LSVPFVLFHGFGGECSNG-KVSNLTQFLINHSGYPGTCVEI-----GNGVQDSLFMPLRQQASIACEKIKQMKEL-SEGY 97 (306)
T ss_pred CCCCEEEECCCCcccCCc-hHHHHHHHHHhCCCCCeEEEEE-----CCCcccccccCHHHHHHHHHHHHhcchhh-cCce
Confidence 346889999999765433 456677777533 665555443 1122 222 3334445555555543 22 2469
Q ss_pred EEEEEchhHHHHHHHHHHhcccc-cccceEEEEcc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACS-RAVRAAIFQVL 201 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~-~~V~gvIL~aP 201 (224)
.+||+|-||+++..|+.+.. . .+|+.+|.++.
T Consensus 98 naIGfSQGglflRa~ierc~--~~p~V~nlISlgg 130 (306)
T PLN02606 98 NIVAESQGNLVARGLIEFCD--NAPPVINYVSLGG 130 (306)
T ss_pred EEEEEcchhHHHHHHHHHCC--CCCCcceEEEecC
Confidence 99999999999999999961 2 47999999874
No 150
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.66 E-value=0.00031 Score=67.21 Aligned_cols=62 Identities=6% Similarity=-0.014 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHhhCC---CCcEEEEEEchhHHHHHHHHHHhcc-------cccccceEEEEccccChH
Q 027344 145 QQDAMEIDQLISYLINKDN---SEGVVLLGHSTGCQDIVHYMRANAA-------CSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~~~~---~~~VvLvGHSmGG~val~ya~~~~~-------~~~~V~gvIL~aPv~D~e 206 (224)
++.++|+.++++.+.++++ ..+++|+||||||..+-.++.+-.. ..-.++|+++-.|+.|+.
T Consensus 148 ~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp~ 219 (462)
T PTZ00472 148 SEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDPY 219 (462)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccChh
Confidence 4567888888887765544 4789999999999998887776311 123689999998988865
No 151
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.66 E-value=0.0008 Score=62.37 Aligned_cols=101 Identities=21% Similarity=0.165 Sum_probs=73.9
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------C---hh-------hhHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------S---LQ-------QDAMEIDQL 154 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------s---l~-------~~~eDL~~l 154 (224)
.+|++|.+.|-||+..+.+. .-++.-|.++|+.-+.+..+ -||.- . .. ..+.|.+.+
T Consensus 91 ~rp~~IhLagTGDh~f~rR~-~l~a~pLl~~gi~s~~le~P----yyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~L 165 (348)
T PF09752_consen 91 YRPVCIHLAGTGDHGFWRRR-RLMARPLLKEGIASLILENP----YYGQRKPKDQRRSSLRNVSDLFVMGRATILESRAL 165 (348)
T ss_pred CCceEEEecCCCccchhhhh-hhhhhHHHHcCcceEEEecc----cccccChhHhhcccccchhHHHHHHhHHHHHHHHH
Confidence 57899999999886533332 22488888889999988753 23321 1 11 247888899
Q ss_pred HHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 155 ISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 155 Ie~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
++++.++ +..++.|.|-||||..+.-.+... ++.|.-+-++++.
T Consensus 166 l~Wl~~~-G~~~~g~~G~SmGG~~A~laa~~~---p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 166 LHWLERE-GYGPLGLTGISMGGHMAALAASNW---PRPVALVPCLSWS 209 (348)
T ss_pred HHHHHhc-CCCceEEEEechhHhhHHhhhhcC---CCceeEEEeeccc
Confidence 9999877 778999999999999888766655 7788777777764
No 152
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.65 E-value=0.00035 Score=63.08 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCceEEEECCCCCCCC--ChhcH--HHHHHHHHhCCcEEEEEcccCCCC-------CCCCCChhhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGFF--ATEYL--EPLAIALDKERWSLVQFLMTSSYT-------GYGTSSLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~--~~~y~--~~La~~L~~~Gy~Vi~~Dlrss~~-------G~G~Ssl~~~~eDL~~lIe~L~~~ 161 (224)
.+|+||=.|-+|-+-. +..++ +.+ ..+. +.+.|+.+|.++... +|-..++++.+|+|.++++++
T Consensus 22 ~kp~ilT~HDvGlNh~scF~~ff~~~~m-~~i~-~~f~i~Hi~aPGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f--- 96 (283)
T PF03096_consen 22 NKPAILTYHDVGLNHKSCFQGFFNFEDM-QEIL-QNFCIYHIDAPGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF--- 96 (283)
T ss_dssp TS-EEEEE--TT--HHHHCHHHHCSHHH-HHHH-TTSEEEEEE-TTTSTT-----TT-----HHHHHCTHHHHHHHH---
T ss_pred CCceEEEeccccccchHHHHHHhcchhH-HHHh-hceEEEEEeCCCCCCCcccccccccccCHHHHHHHHHHHHHhC---
Confidence 4788888999885421 11221 222 2333 589999999864322 122224455566666666666
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+.+.|+-+|==.|+.|..+|+.++ +++|.|+||+.|..-
T Consensus 97 -~lk~vIg~GvGAGAnIL~rfAl~~---p~~V~GLiLvn~~~~ 135 (283)
T PF03096_consen 97 -GLKSVIGFGVGAGANILARFALKH---PERVLGLILVNPTCT 135 (283)
T ss_dssp -T---EEEEEETHHHHHHHHHHHHS---GGGEEEEEEES---S
T ss_pred -CccEEEEEeeccchhhhhhccccC---ccceeEEEEEecCCC
Confidence 478899999999999999999998 999999999998765
No 153
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.60 E-value=0.00026 Score=56.88 Aligned_cols=58 Identities=10% Similarity=-0.161 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhccc-ccccceEEEEcccc
Q 027344 146 QDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAAC-SRAVRAAIFQVLTI 203 (224)
Q Consensus 146 ~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~-~~~V~gvIL~aPv~ 203 (224)
...+++...++..+++.+..+|+++||||||.++...+...... ..++..++..+|+.
T Consensus 9 ~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~ 67 (153)
T cd00741 9 SLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPR 67 (153)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCc
Confidence 34566666777666667888999999999999999988776210 13566677777654
No 154
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=97.59 E-value=0.00097 Score=59.95 Aligned_cols=96 Identities=23% Similarity=0.208 Sum_probs=59.7
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh--hhhHHHHHHHHHHHHh---hC---CCCcEEEEEEchhHHHHHH
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL--QQDAMEIDQLISYLIN---KD---NSEGVVLLGHSTGCQDIVH 181 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl--~~~~eDL~~lIe~L~~---~~---~~~~VvLvGHSmGG~val~ 181 (224)
..+-..+...+.++||.|++.||. |.|.... .....++-+.|+..++ .. ...+++|+|||-||+-++.
T Consensus 12 ~~~e~~~l~~~L~~GyaVv~pDY~----Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~ 87 (290)
T PF03583_consen 12 TEYEAPFLAAWLARGYAVVAPDYE----GLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALW 87 (290)
T ss_pred hHhHHHHHHHHHHCCCEEEecCCC----CCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHH
Confidence 344445556666799999999984 5555221 1223333344444432 11 2358999999999998765
Q ss_pred HHHHhc-cccc-c--cceEEEEccccChHHHH
Q 027344 182 YMRANA-ACSR-A--VRAAIFQVLTIDFEIFV 209 (224)
Q Consensus 182 ya~~~~-~~~~-~--V~gvIL~aPv~D~e~~~ 209 (224)
.+.... ..++ + |.|+++.+|+.|.+...
T Consensus 88 AA~l~~~YApeL~~~l~Gaa~gg~~~dl~~~~ 119 (290)
T PF03583_consen 88 AAELAPSYAPELNRDLVGAAAGGPPADLAALL 119 (290)
T ss_pred HHHHhHHhCcccccceeEEeccCCccCHHHHH
Confidence 443211 1232 4 89999999999977644
No 155
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.57 E-value=0.00043 Score=54.07 Aligned_cols=68 Identities=16% Similarity=0.052 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccc----cccceEEEEcccc-ChHHHHHHHHhh
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACS----RAVRAAIFQVLTI-DFEIFVVLLIAS 215 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~----~~V~gvIL~aPv~-D~e~~~~~~~~~ 215 (224)
.+++.+.++.+.++.+..+|++.|||+||.++..++....... ..++.+..-+|.. |.+......+..
T Consensus 47 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~~ 119 (140)
T PF01764_consen 47 YDQILDALKELVEKYPDYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRVGNSAFAKWYDSLF 119 (140)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--BEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccccCHHHHHHHHhhC
Confidence 4456666666666777788999999999999988877652211 4566666666654 455444444333
No 156
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.52 E-value=0.00055 Score=62.62 Aligned_cols=43 Identities=14% Similarity=-0.048 Sum_probs=38.0
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
.+..+|.++|.|+||.-.+.++.++ |+...++|+++.-.|+-+
T Consensus 266 ID~sRIYviGlSrG~~gt~al~~kf---PdfFAaa~~iaG~~d~v~ 308 (387)
T COG4099 266 IDRSRIYVIGLSRGGFGTWALAEKF---PDFFAAAVPIAGGGDRVY 308 (387)
T ss_pred cccceEEEEeecCcchhhHHHHHhC---chhhheeeeecCCCchhh
Confidence 3567899999999999999999998 999999999998888543
No 157
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.49 E-value=0.00043 Score=59.20 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhccc--ccccceEEEEccccChHHHHH
Q 027344 146 QDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAAC--SRAVRAAIFQVLTIDFEIFVV 210 (224)
Q Consensus 146 ~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~--~~~V~gvIL~aPv~D~e~~~~ 210 (224)
...+++...++.++++.+..+|++.||||||.++..++...... ...+..+.+-+|..-...++.
T Consensus 109 ~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~vg~~~~a~ 175 (229)
T cd00519 109 SLYNQVLPELKSALKQYPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRVGNAAFAE 175 (229)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCCCCHHHHH
Confidence 34566666777777677888999999999999998877764111 456777777777654333333
No 158
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.48 E-value=0.00084 Score=61.05 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=70.0
Q ss_pred CceEEEECCCCCCC----CChhcHHHHHHHHHhCCcEEEEEcc-cCCC--CCCCC----CCh---hhhHHHHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGF----FATEYLEPLAIALDKERWSLVQFLM-TSSY--TGYGT----SSL---QQDAMEIDQLISYLI 159 (224)
Q Consensus 94 ~~~IVfVHGlg~~~----~~~~y~~~La~~L~~~Gy~Vi~~Dl-rss~--~G~G~----Ssl---~~~~eDL~~lIe~L~ 159 (224)
.|.||.+||-..+- +... |+.|++ +.||-|+.+|- .... .+.+. .+. -+++.+|+++++.|.
T Consensus 61 apLvv~LHG~~~sgag~~~~sg-~d~lAd---~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~ 136 (312)
T COG3509 61 APLVVVLHGSGGSGAGQLHGTG-WDALAD---REGFLVAYPDGYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLV 136 (312)
T ss_pred CCEEEEEecCCCChHHhhcccc-hhhhhc---ccCcEEECcCccccccCCCcccccCCcccccCCccHHHHHHHHHHHHH
Confidence 46888899977543 2232 355666 57999998853 1111 12222 211 246888999999999
Q ss_pred hhCCCC--cEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 160 NKDNSE--GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 160 ~~~~~~--~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
.+++.+ +|++.|-|-||+.+..++-.+ ++...++-.++.
T Consensus 137 ~~~gidp~RVyvtGlS~GG~Ma~~lac~~---p~~faa~A~VAg 177 (312)
T COG3509 137 NEYGIDPARVYVTGLSNGGRMANRLACEY---PDIFAAIAPVAG 177 (312)
T ss_pred HhcCcCcceEEEEeeCcHHHHHHHHHhcC---cccccceeeeec
Confidence 887655 899999999999999999887 777777765553
No 159
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.48 E-value=0.0008 Score=56.49 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=60.9
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHH----hCCcEEEEEcccCCCCC--CCCCChhhhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALD----KERWSLVQFLMTSSYTG--YGTSSLQQDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~----~~Gy~Vi~~Dlrss~~G--~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
.||+.-|-+|.......-..+.+.|. .....+..++|+....+ |.. +...-++++..+|+...++-+..+++|
T Consensus 7 ~vi~aRGT~E~~g~~~~g~~~~~~l~~~~g~~~~~~~~V~YpA~~~~~~y~~-S~~~G~~~~~~~i~~~~~~CP~~kivl 85 (179)
T PF01083_consen 7 HVIFARGTGEPPGVGRVGPPFADALQAQPGGTSVAVQGVEYPASLGPNSYGD-SVAAGVANLVRLIEEYAARCPNTKIVL 85 (179)
T ss_dssp EEEEE--TTSSTTTCCCHHHHHHHHHHHCTTCEEEEEE--S---SCGGSCHH-HHHHHHHHHHHHHHHHHHHSTTSEEEE
T ss_pred EEEEecCCCCCCCCccccHHHHHHHHhhcCCCeeEEEecCCCCCCCcccccc-cHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 35555665553211122222333333 22345555667543221 111 223346777777777777788889999
Q ss_pred EEEchhHHHHHHHHHH---hcccccccceEEEEccccC
Q 027344 170 LGHSTGCQDIVHYMRA---NAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 170 vGHSmGG~val~ya~~---~~~~~~~V~gvIL~aPv~D 204 (224)
+|+|.|++++...+.. .....++|.++||.+-+..
T Consensus 86 ~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~ 123 (179)
T PF01083_consen 86 AGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRR 123 (179)
T ss_dssp EEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTT
T ss_pred EecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcc
Confidence 9999999999999887 1123579999999985433
No 160
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=97.46 E-value=0.00068 Score=63.15 Aligned_cols=120 Identities=17% Similarity=0.232 Sum_probs=79.8
Q ss_pred EEEEeCCCCceEEEeeC------CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC----h
Q 027344 75 VLFKYGPKPVQVAFKTG------DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS----L 144 (224)
Q Consensus 75 ~l~~y~~~~~~v~y~~g------~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss----l 144 (224)
++..-+.+...--|.++ +.+..||+.-|-.+ +.....+ ..=.+.||.|+.+++ +||+.++ -
T Consensus 218 kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAG-FYEvG~m----~tP~~lgYsvLGwNh----PGFagSTG~P~p 288 (517)
T KOG1553|consen 218 KIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAG-FYEVGVM----NTPAQLGYSVLGWNH----PGFAGSTGLPYP 288 (517)
T ss_pred EEeecCCcchhheeecCCCCCCCCCceEEEEecCCcc-ceEeeee----cChHHhCceeeccCC----CCccccCCCCCc
Confidence 44445554444444442 12456777777543 2111111 111247999999987 5887653 2
Q ss_pred hhhHHHHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 145 QQDAMEIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
.++.+.+++++++..+. +..+.|+|+|+|.||..++..+..+ ..|+++||-|.+.|.-.
T Consensus 289 ~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~Y----PdVkavvLDAtFDDllp 349 (517)
T KOG1553|consen 289 VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNY----PDVKAVVLDATFDDLLP 349 (517)
T ss_pred ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcC----CCceEEEeecchhhhhh
Confidence 45677888999988775 4567899999999999888777665 58999999999887543
No 161
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.45 E-value=0.0012 Score=60.00 Aligned_cols=103 Identities=11% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCceEEEECCCCCCCCC--hhc--HHHHHHHHHhCCcEEEEEcccCCCC-------CCCCCChhhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGFFA--TEY--LEPLAIALDKERWSLVQFLMTSSYT-------GYGTSSLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~--~~y--~~~La~~L~~~Gy~Vi~~Dlrss~~-------G~G~Ssl~~~~eDL~~lIe~L~~~ 161 (224)
.+|+||=.|.++-+-.. ..+ +..++ .+.++ +.|+.+|-++... ||-..++++.+++|..+++++
T Consensus 45 ~kpaiiTyhDlglN~~scFq~ff~~p~m~-ei~~~-fcv~HV~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f--- 119 (326)
T KOG2931|consen 45 NKPAIITYHDLGLNHKSCFQGFFNFPDMA-EILEH-FCVYHVDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF--- 119 (326)
T ss_pred CCceEEEecccccchHhHhHHhhcCHhHH-HHHhh-eEEEecCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc---
Confidence 47888888999854211 111 22333 34444 9999998753221 233344555566666666655
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+.+-|+=+|-=.|++|..+|+..| +++|.|+||+.+..-
T Consensus 120 -~lk~vIg~GvGAGAyIL~rFAl~h---p~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 120 -GLKSVIGMGVGAGAYILARFALNH---PERVLGLVLINCDPC 158 (326)
T ss_pred -CcceEEEecccccHHHHHHHHhcC---hhheeEEEEEecCCC
Confidence 578899999999999999999998 999999999987644
No 162
>PLN02633 palmitoyl protein thioesterase family protein
Probab=97.39 E-value=0.002 Score=58.95 Aligned_cols=101 Identities=13% Similarity=0.012 Sum_probs=63.5
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhC-CcEEEEEcccCCCCCCCCCC-hhhhHHHHHHHHHHHHh--hCCCCcEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKE-RWSLVQFLMTSSYTGYGTSS-LQQDAMEIDQLISYLIN--KDNSEGVV 168 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~-Gy~Vi~~Dlrss~~G~G~Ss-l~~~~eDL~~lIe~L~~--~~~~~~Vv 168 (224)
...+||+-||+|+..... -+..+++.+.+. |.-+..+.... +. ..+ +...-+.++.+.+.|++ ++ .+-+.
T Consensus 24 ~~~P~ViwHG~GD~c~~~-g~~~~~~l~~~~~g~~~~~i~ig~---~~-~~s~~~~~~~Qve~vce~l~~~~~l-~~G~n 97 (314)
T PLN02633 24 VSVPFIMLHGIGTQCSDA-TNANFTQLLTNLSGSPGFCLEIGN---GV-GDSWLMPLTQQAEIACEKVKQMKEL-SQGYN 97 (314)
T ss_pred CCCCeEEecCCCcccCCc-hHHHHHHHHHhCCCCceEEEEECC---Cc-cccceeCHHHHHHHHHHHHhhchhh-hCcEE
Confidence 446788899999876432 445566666442 56666665421 11 111 22333444445554443 22 24699
Q ss_pred EEEEchhHHHHHHHHHHhcccc-cccceEEEEcc
Q 027344 169 LLGHSTGCQDIVHYMRANAACS-RAVRAAIFQVL 201 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~-~~V~gvIL~aP 201 (224)
+||||-||+++..|+++. .. .+|+.+|-++.
T Consensus 98 aIGfSQGGlflRa~ierc--~~~p~V~nlISlgg 129 (314)
T PLN02633 98 IVGRSQGNLVARGLIEFC--DGGPPVYNYISLAG 129 (314)
T ss_pred EEEEccchHHHHHHHHHC--CCCCCcceEEEecC
Confidence 999999999999999996 12 47999999874
No 163
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=97.35 E-value=0.0013 Score=59.41 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=49.1
Q ss_pred CceEEEECCCCCCCCC---hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-----Ch-hhhHHHHHHHHHHHHh--hC
Q 027344 94 QQQVIFIGGLTDGFFA---TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-----SL-QQDAMEIDQLISYLIN--KD 162 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~---~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-----sl-~~~~eDL~~lIe~L~~--~~ 162 (224)
..+||+.||++++... ..-+..+++... .|--|..+++ |-+.. ++ .+.-+.++.+.+.+++ ++
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~-PG~yV~si~i-----g~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L 78 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQH-PGTYVHSIEI-----GNDPSEDVENSFFGNVNDQVEQVCEQLANDPEL 78 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHS-TT--EEE--S-----SSSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGG
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhC-CCceEEEEEE-----CCCcchhhhhhHHHHHHHHHHHHHHHHhhChhh
Confidence 4578999999986432 222333443332 3767777765 22211 11 1112223334444432 11
Q ss_pred CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
.+-+.+||+|-||+++..|+.+. ....|+.+|.++.
T Consensus 79 -~~G~~~IGfSQGgl~lRa~vq~c--~~~~V~nlISlgg 114 (279)
T PF02089_consen 79 -ANGFNAIGFSQGGLFLRAYVQRC--NDPPVHNLISLGG 114 (279)
T ss_dssp -TT-EEEEEETCHHHHHHHHHHH---TSS-EEEEEEES-
T ss_pred -hcceeeeeeccccHHHHHHHHHC--CCCCceeEEEecC
Confidence 14699999999999999999997 2458999999873
No 164
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=97.29 E-value=0.0031 Score=56.37 Aligned_cols=104 Identities=11% Similarity=0.150 Sum_probs=65.2
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCC-----CChhhhHHHHHHHHHHHHhhCCCCcEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGT-----SSLQQDAMEIDQLISYLINKDNSEGVV 168 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~-----Ssl~~~~eDL~~lIe~L~~~~~~~~Vv 168 (224)
.++||+-.||+.. .+.+..||++|..+||.|+.+|-- .+.|--- .++....+||..+++||+ +.+.+++-
T Consensus 30 ~~tiliA~Gf~rr---mdh~agLA~YL~~NGFhViRyDsl-~HvGlSsG~I~eftms~g~~sL~~V~dwl~-~~g~~~~G 104 (294)
T PF02273_consen 30 NNTILIAPGFARR---MDHFAGLAEYLSANGFHVIRYDSL-NHVGLSSGDINEFTMSIGKASLLTVIDWLA-TRGIRRIG 104 (294)
T ss_dssp S-EEEEE-TT-GG---GGGGHHHHHHHHTTT--EEEE----B-------------HHHHHHHHHHHHHHHH-HTT---EE
T ss_pred CCeEEEecchhHH---HHHHHHHHHHHhhCCeEEEecccc-ccccCCCCChhhcchHHhHHHHHHHHHHHH-hcCCCcch
Confidence 4789999999853 345678999999999999999962 3333211 123455789999999999 56888999
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
|+.-|.-+-++.+-+.+ . .+.-+|+.-.|.+...
T Consensus 105 LIAaSLSaRIAy~Va~~----i-~lsfLitaVGVVnlr~ 138 (294)
T PF02273_consen 105 LIAASLSARIAYEVAAD----I-NLSFLITAVGVVNLRD 138 (294)
T ss_dssp EEEETTHHHHHHHHTTT----S---SEEEEES--S-HHH
T ss_pred hhhhhhhHHHHHHHhhc----c-CcceEEEEeeeeeHHH
Confidence 99999999999888764 2 5777888878877554
No 165
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=97.24 E-value=0.0011 Score=60.95 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEccc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlr 133 (224)
.-|+|||-||+++.- .++-.++-.|+..||.|.++.+|
T Consensus 117 k~PvvvFSHGLggsR---t~YSa~c~~LAShG~VVaavEHR 154 (399)
T KOG3847|consen 117 KYPVVVFSHGLGGSR---TLYSAYCTSLASHGFVVAAVEHR 154 (399)
T ss_pred CccEEEEecccccch---hhHHHHhhhHhhCceEEEEeecc
Confidence 348999999998632 34556888899999999999986
No 166
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0032 Score=56.72 Aligned_cols=99 Identities=19% Similarity=0.132 Sum_probs=66.6
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHh-CCcEEEEEcccCCCCCCC--CCChhhhHHHHHHHHHHHHh-hCCCCcEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDK-ERWSLVQFLMTSSYTGYG--TSSLQQDAMEIDQLISYLIN-KDNSEGVVLL 170 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~-~Gy~Vi~~Dlrss~~G~G--~Ssl~~~~eDL~~lIe~L~~-~~~~~~VvLv 170 (224)
-++|++||+++..... -+..+.+.+.+ -|..|++.|. |-| .+.+....+.+..+.|.+++ +.-.+-+.++
T Consensus 24 ~P~ii~HGigd~c~~~-~~~~~~q~l~~~~g~~v~~lei-----g~g~~~s~l~pl~~Qv~~~ce~v~~m~~lsqGyniv 97 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSL-SMANLTQLLEELPGSPVYCLEI-----GDGIKDSSLMPLWEQVDVACEKVKQMPELSQGYNIV 97 (296)
T ss_pred CCEEEEeccCcccccc-hHHHHHHHHHhCCCCeeEEEEe-----cCCcchhhhccHHHHHHHHHHHHhcchhccCceEEE
Confidence 5778889999865431 12233333332 3888888887 444 44555555666666666653 1124579999
Q ss_pred EEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 171 GHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 171 GHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
|.|-||+++...+... . ..+|+.+|-++.
T Consensus 98 g~SQGglv~Raliq~c-d-~ppV~n~ISL~g 126 (296)
T KOG2541|consen 98 GYSQGGLVARALIQFC-D-NPPVKNFISLGG 126 (296)
T ss_pred EEccccHHHHHHHHhC-C-CCCcceeEeccC
Confidence 9999999998888775 2 378999998874
No 167
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.15 E-value=0.011 Score=50.03 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhhC-CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 147 DAMEIDQLISYLINKD-NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~~-~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
-..+|..+++-|+... +..++.++|||||+.++-..+... ...++.+|+++-
T Consensus 90 ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~---~~~vddvv~~GS 142 (177)
T PF06259_consen 90 GAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQG---GLRVDDVVLVGS 142 (177)
T ss_pred HHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhC---CCCcccEEEECC
Confidence 3678888888888765 567899999999999998888774 679999999874
No 168
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0086 Score=53.67 Aligned_cols=117 Identities=12% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhCC---cEEEEEcccCCCCCCCCCC-------------hhhhHHHHHHHH
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKER---WSLVQFLMTSSYTGYGTSS-------------LQQDAMEIDQLI 155 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~G---y~Vi~~Dlrss~~G~G~Ss-------------l~~~~eDL~~lI 155 (224)
..++.|++|.|-.+.. .|+..++++|.++- ..|+.+-. -||-.-. +-...+.++--+
T Consensus 27 ~~~~li~~IpGNPG~~---gFY~~F~~~L~~~l~~r~~~wtIsh----~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKl 99 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLL---GFYTEFARHLHLNLIDRLPVWTISH----AGHALMPASLREDHSHTNEEIFSLQDQVDHKL 99 (301)
T ss_pred CCceEEEEecCCCCch---hHHHHHHHHHHHhcccccceeEEec----cccccCCcccccccccccccccchhhHHHHHH
Confidence 4678888999977643 34556777765432 33666533 2332110 001123344444
Q ss_pred HHHHhhC-CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhcccc
Q 027344 156 SYLINKD-NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLLS 221 (224)
Q Consensus 156 e~L~~~~-~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~~ 221 (224)
+.+++-. ...+++++|||-|+..++..+... ...-+|..++++-|. .+.+-+.++-++++
T Consensus 100 aFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~-k~~~~vqKa~~LFPT-----IerM~eSpnG~~~t 160 (301)
T KOG3975|consen 100 AFIKEYVPKDRKIYIIGHSIGAYMVLQILPSI-KLVFSVQKAVLLFPT-----IERMHESPNGIRLT 160 (301)
T ss_pred HHHHHhCCCCCEEEEEecchhHHHHHHHhhhc-ccccceEEEEEecch-----HHHHhcCCCceEee
Confidence 4444322 256899999999999999988753 235689999999996 34444554444443
No 169
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0006 Score=67.32 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCceEEEECC-CCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------ChhhhHHHHHHHHHHHHhh-
Q 027344 92 DYQQQVIFIGG-LTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------SLQQDAMEIDQLISYLINK- 161 (224)
Q Consensus 92 ~~~~~IVfVHG-lg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------sl~~~~eDL~~lIe~L~~~- 161 (224)
+++|.+|+.+| ++... .++|..--.-|.++||.+...|.|+.+ .+|.. .-.+.++|..+.++||.++
T Consensus 468 g~~P~LLygYGay~isl--~p~f~~srl~lld~G~Vla~a~VRGGG-e~G~~WHk~G~lakKqN~f~Dfia~AeyLve~g 544 (712)
T KOG2237|consen 468 GSKPLLLYGYGAYGISL--DPSFRASRLSLLDRGWVLAYANVRGGG-EYGEQWHKDGRLAKKQNSFDDFIACAEYLVENG 544 (712)
T ss_pred CCCceEEEEecccceee--ccccccceeEEEecceEEEEEeeccCc-ccccchhhccchhhhcccHHHHHHHHHHHHHcC
Confidence 46788888866 33322 233322112244589998888887532 34432 2245689999999999874
Q ss_pred -CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 162 -DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 162 -~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
....++.+.|.|.||.++-..++++ |+-+.++|+..|+.|.-
T Consensus 545 yt~~~kL~i~G~SaGGlLvga~iN~r---PdLF~avia~VpfmDvL 587 (712)
T KOG2237|consen 545 YTQPSKLAIEGGSAGGLLVGACINQR---PDLFGAVIAKVPFMDVL 587 (712)
T ss_pred CCCccceeEecccCccchhHHHhccC---chHhhhhhhcCcceehh
Confidence 2456899999999999999999997 99999999999998853
No 170
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.02 E-value=0.0014 Score=55.95 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=50.9
Q ss_pred CCceEEEECCCCCCC-CChhcHHHHHHHHHhCCcEEEEEcccCCC-CCCCCCCh-----------------------hhh
Q 027344 93 YQQQVIFIGGLTDGF-FATEYLEPLAIALDKERWSLVQFLMTSSY-TGYGTSSL-----------------------QQD 147 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~-~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-~G~G~Ssl-----------------------~~~ 147 (224)
.++-||++||++.+- ....-+..|.+.|.+.++.++.+|=+-.. ++.+.... ...
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 467899999998653 11222345667776548999888753211 11111100 112
Q ss_pred HHHHHHHHHHHHhhC--CCCcEEEEEEchhHHHHHHHHHHhcc-----cccccceEEEEccccC
Q 027344 148 AMEIDQLISYLINKD--NSEGVVLLGHSTGCQDIVHYMRANAA-----CSRAVRAAIFQVLTID 204 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~--~~~~VvLvGHSmGG~val~ya~~~~~-----~~~~V~gvIL~aPv~D 204 (224)
.+++++.++++.+.. .+.=.-|+|+|.|+.++..++..... ....++-+|+++++..
T Consensus 83 ~~~~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p 146 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPP 146 (212)
T ss_dssp G---HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----
T ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCC
Confidence 344555444444311 12246799999999999988865411 2346888999986543
No 171
>KOG3101 consensus Esterase D [General function prediction only]
Probab=96.97 E-value=0.00087 Score=58.78 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCceEEEECCCCCC---CCChhcHHHHHHHHHhCCcEEEEEcccCCCC----------CCCCC-------C---hhh---
Q 027344 93 YQQQVIFIGGLTDG---FFATEYLEPLAIALDKERWSLVQFLMTSSYT----------GYGTS-------S---LQQ--- 146 (224)
Q Consensus 93 ~~~~IVfVHGlg~~---~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~----------G~G~S-------s---l~~--- 146 (224)
..|++.++-|++.. +..-..+.+.| .+.|..|+.+|-. .++ .||.. . +..
T Consensus 43 ~~P~lf~LSGLTCT~~Nfi~Ksg~qq~A---s~hgl~vV~PDTS-PRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yr 118 (283)
T KOG3101|consen 43 RCPVLFYLSGLTCTHENFIEKSGFQQQA---SKHGLAVVAPDTS-PRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYR 118 (283)
T ss_pred cCceEEEecCCcccchhhHhhhhHHHhH---hhcCeEEECCCCC-CCccccCCCcccccccCCceeEEecccchHhhhhh
Confidence 35888999999743 22222223333 3679999999973 110 12221 0 111
Q ss_pred ----hHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 147 ----DAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 147 ----~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
.+++|-+++....-..+..++-++||||||.=++.-..++ +.+.+.+-..||+..
T Consensus 119 MYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn---~~kykSvSAFAPI~N 177 (283)
T KOG3101|consen 119 MYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKN---PSKYKSVSAFAPICN 177 (283)
T ss_pred HHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcC---cccccceeccccccC
Confidence 1233333333211134556799999999999888876665 667777777777644
No 172
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.93 E-value=0.0041 Score=58.46 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=71.0
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhC---------CcEEEEEcccCCCCCCCCCChh----hhHHHHHHHHHHHHhh
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKE---------RWSLVQFLMTSSYTGYGTSSLQ----QDAMEIDQLISYLINK 161 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~---------Gy~Vi~~Dlrss~~G~G~Ssl~----~~~eDL~~lIe~L~~~ 161 (224)
.+|+++|||.++. .++++ ++.-|.+. -|.||++-+ +|||.|+-. --+...+.+++.|.-+
T Consensus 153 ~PlLl~HGwPGsv--~EFyk-fIPlLT~p~~hg~~~d~~FEVI~PSl----PGygwSd~~sk~GFn~~a~ArvmrkLMlR 225 (469)
T KOG2565|consen 153 KPLLLLHGWPGSV--REFYK-FIPLLTDPKRHGNESDYAFEVIAPSL----PGYGWSDAPSKTGFNAAATARVMRKLMLR 225 (469)
T ss_pred cceEEecCCCchH--HHHHh-hhhhhcCccccCCccceeEEEeccCC----CCcccCcCCccCCccHHHHHHHHHHHHHH
Confidence 4789999999865 34443 55555543 377888876 588887432 1255577777777667
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF 198 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL 198 (224)
.+.++.++=|--+|+.|+...+.-+ |++|.|+=+
T Consensus 226 Lg~nkffiqGgDwGSiI~snlasLy---PenV~GlHl 259 (469)
T KOG2565|consen 226 LGYNKFFIQGGDWGSIIGSNLASLY---PENVLGLHL 259 (469)
T ss_pred hCcceeEeecCchHHHHHHHHHhhc---chhhhHhhh
Confidence 8899999999999999999999988 999998754
No 173
>COG3150 Predicted esterase [General function prediction only]
Probab=96.88 E-value=0.0058 Score=51.72 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=57.2
Q ss_pred EEEECCCCCCCCChhcHHHH-HHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchh
Q 027344 97 VIFIGGLTDGFFATEYLEPL-AIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTG 175 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~L-a~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmG 175 (224)
||++|||-.+-.. .-..+ .+++. ...+.+.+-- -+-..+..+.+++++.+|+ +.+.+...|+|-|+|
T Consensus 2 ilYlHGFnSSP~s--hka~l~~q~~~-~~~~~i~y~~-----p~l~h~p~~a~~ele~~i~----~~~~~~p~ivGssLG 69 (191)
T COG3150 2 ILYLHGFNSSPGS--HKAVLLLQFID-EDVRDIEYST-----PHLPHDPQQALKELEKAVQ----ELGDESPLIVGSSLG 69 (191)
T ss_pred eEEEecCCCCccc--HHHHHHHHHHh-ccccceeeec-----CCCCCCHHHHHHHHHHHHH----HcCCCCceEEeecch
Confidence 8999999754321 21222 23333 3333333211 1112233344555555555 445667999999999
Q ss_pred HHHHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhh
Q 027344 176 CQDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHN 217 (224)
Q Consensus 176 G~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n 217 (224)
|.-+.....++ .|+.+|+-=.+-..|.+.....+++|
T Consensus 70 GY~At~l~~~~-----Girav~~NPav~P~e~l~gylg~~en 106 (191)
T COG3150 70 GYYATWLGFLC-----GIRAVVFNPAVRPYELLTGYLGRPEN 106 (191)
T ss_pred HHHHHHHHHHh-----CChhhhcCCCcCchhhhhhhcCCCCC
Confidence 99998888776 56666554333444555445554443
No 174
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.84 E-value=0.0075 Score=52.21 Aligned_cols=105 Identities=17% Similarity=0.085 Sum_probs=63.6
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccC-CC---CCCCCC----------Chhhh-------HHHHH
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTS-SY---TGYGTS----------SLQQD-------AMEID 152 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrs-s~---~G~G~S----------sl~~~-------~eDL~ 152 (224)
+.+|||+||++|+... + .++++-|.-++...+.+.-+. .. .|.+.. +..++ ++-++
T Consensus 3 ~atIi~LHglGDsg~~--~-~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~ 79 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGSG--W-AQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIA 79 (206)
T ss_pred eEEEEEEecCCCCCcc--H-HHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHH
Confidence 4689999999987532 2 234444555566666663321 10 111110 11112 33344
Q ss_pred HHHHHHHhh-CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 153 QLISYLINK-DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 153 ~lIe~L~~~-~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
.++++-.+. .+..+|++-|.||||.++++.+..+ +..+.|++-..+...
T Consensus 80 ~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~---~~~l~G~~~~s~~~p 129 (206)
T KOG2112|consen 80 NLIDNEPANGIPSNRIGIGGFSQGGALALYSALTY---PKALGGIFALSGFLP 129 (206)
T ss_pred HHHHHHHHcCCCccceeEcccCchHHHHHHHHhcc---ccccceeeccccccc
Confidence 444433322 3456899999999999999999887 788888887776654
No 175
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=96.78 E-value=0.0034 Score=55.22 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=60.8
Q ss_pred hcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC---------------ChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchh
Q 027344 111 EYLEPLAIALDKERWSLVQFLMTSSYTGYGTS---------------SLQQDAMEIDQLISYLINKDNSEGVVLLGHSTG 175 (224)
Q Consensus 111 ~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S---------------sl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmG 175 (224)
+-.+..|+.++.+||.|+.+|+= .|-..+ +.+.-..|+..++++|+.+-..++|=++|.-||
T Consensus 54 ~n~r~~Adk~A~~Gy~v~vPD~~---~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g~~kkIGv~GfCwG 130 (242)
T KOG3043|consen 54 PNTREGADKVALNGYTVLVPDFF---RGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHGDSKKIGVVGFCWG 130 (242)
T ss_pred HHHHHHHHHHhcCCcEEEcchhh---cCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcCCcceeeEEEEeec
Confidence 44567889999999999999982 221111 112347899999999997655889999999999
Q ss_pred HHHHHHHHHHhcccccccceEEEE
Q 027344 176 CQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 176 G~val~ya~~~~~~~~~V~gvIL~ 199 (224)
|-++.++..+. + .+.+++..
T Consensus 131 ak~vv~~~~~~---~-~f~a~v~~ 150 (242)
T KOG3043|consen 131 AKVVVTLSAKD---P-EFDAGVSF 150 (242)
T ss_pred ceEEEEeeccc---h-hheeeeEe
Confidence 99999998874 3 45544443
No 176
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0057 Score=60.72 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=82.0
Q ss_pred CceEEEeeC----CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------ChhhhHHH
Q 027344 83 PVQVAFKTG----DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------SLQQDAME 150 (224)
Q Consensus 83 ~~~v~y~~g----~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------sl~~~~eD 150 (224)
+..+.|+.. ++.|++++.=|.=+... .+.|....-.|..+|+......-|+.+ -.|.. ...+.++|
T Consensus 433 PVSLvyrkd~~~~g~~p~lLygYGaYG~s~-~p~Fs~~~lSLlDRGfiyAIAHVRGGg-elG~~WYe~GK~l~K~NTf~D 510 (682)
T COG1770 433 PVSLVYRKDTKLDGSAPLLLYGYGAYGISM-DPSFSIARLSLLDRGFVYAIAHVRGGG-ELGRAWYEDGKLLNKKNTFTD 510 (682)
T ss_pred eEEEEEecccCCCCCCcEEEEEeccccccC-CcCcccceeeeecCceEEEEEEeeccc-ccChHHHHhhhhhhccccHHH
Confidence 445677743 46788888755433222 222332233466789887776666321 11221 12346899
Q ss_pred HHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 151 IDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 151 L~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
.-++.++|.++ ...++|+++|-|.||+++-..+++. |+..+++|++.|+.|.-.
T Consensus 511 FIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~---P~lf~~iiA~VPFVDvlt 566 (682)
T COG1770 511 FIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMA---PDLFAGIIAQVPFVDVLT 566 (682)
T ss_pred HHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhC---hhhhhheeecCCccchhh
Confidence 99999999864 2356899999999999999999986 999999999999988654
No 177
>COG0627 Predicted esterase [General function prediction only]
Probab=96.77 E-value=0.0055 Score=56.16 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=34.6
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
+..++||||||.=++.++.++ +++.+.+.-.+|+.++.
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~---pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKH---PDRFKSASSFSGILSPS 190 (316)
T ss_pred CceeEEEeccchhhhhhhhhC---cchhceecccccccccc
Confidence 789999999999999999998 79999999999887766
No 178
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=96.64 E-value=0.0056 Score=60.06 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=66.4
Q ss_pred HHHhCCcEEEEEcccCCCCCCCCCC--hhhhHHHHHHHHHHHHhh-CCCCcEEEEEEchhHHHHHHHHHHhcccccccce
Q 027344 119 ALDKERWSLVQFLMTSSYTGYGTSS--LQQDAMEIDQLISYLINK-DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRA 195 (224)
Q Consensus 119 ~L~~~Gy~Vi~~Dlrss~~G~G~Ss--l~~~~eDL~~lIe~L~~~-~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~g 195 (224)
.+..+||.|+..|.|+.+.--|... ..+.++|-.++|++|.++ ...-+|..+|-|++|...+..+... +..+++
T Consensus 75 ~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~---pPaLka 151 (563)
T COG2936 75 WFAAQGYAVVNQDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQ---PPALKA 151 (563)
T ss_pred eeecCceEEEEecccccccCCcccceeccccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcC---Cchhee
Confidence 4567899999999986554444322 125789999999999874 2334799999999999998888876 899999
Q ss_pred EEEEccccCh
Q 027344 196 AIFQVLTIDF 205 (224)
Q Consensus 196 vIL~aPv~D~ 205 (224)
++-+.+..|.
T Consensus 152 i~p~~~~~D~ 161 (563)
T COG2936 152 IAPTEGLVDR 161 (563)
T ss_pred eccccccccc
Confidence 9999888774
No 179
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.013 Score=51.72 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=66.7
Q ss_pred CCceEEEECCCCCCCCChhcHHH--------------HHHHHHhCCcEEEEEcccCCCC---CCCCC--ChhhhHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEP--------------LAIALDKERWSLVQFLMTSSYT---GYGTS--SLQQDAMEIDQ 153 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~--------------La~~L~~~Gy~Vi~~Dlrss~~---G~G~S--sl~~~~eDL~~ 153 (224)
++..+|+|||-|- .....|.+. +.++-.+.||.|+..+-..... ++-.. .....++-..-
T Consensus 100 ~~kLlVLIHGSGv-VrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~y 178 (297)
T KOG3967|consen 100 PQKLLVLIHGSGV-VRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKY 178 (297)
T ss_pred ccceEEEEecCce-EecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHH
Confidence 5668999999652 111122211 2233345799999887532211 11100 11123455555
Q ss_pred HHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEE-ccccChH
Q 027344 154 LISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQ-VLTIDFE 206 (224)
Q Consensus 154 lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~-aPv~D~e 206 (224)
+..++......+.|+++.||+||...+..+.++. ..++|-++.|. +|+..++
T Consensus 179 vw~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~-~d~~v~aialTDs~~~~p~ 231 (297)
T KOG3967|consen 179 VWKNIVLPAKAESVFVVAHSYGGSLTLDLVERFP-DDESVFAIALTDSAMGSPQ 231 (297)
T ss_pred HHHHHhcccCcceEEEEEeccCChhHHHHHHhcC-CccceEEEEeecccccCch
Confidence 5555554445678999999999999999999983 45788888775 4443333
No 180
>PLN02454 triacylglycerol lipase
Probab=96.61 E-value=0.0078 Score=57.09 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhCCCCc--EEEEEEchhHHHHHHHHHHhcc-----cccccceEEEEccccChHHHHHHHH
Q 027344 147 DAMEIDQLISYLINKDNSEG--VVLLGHSTGCQDIVHYMRANAA-----CSRAVRAAIFQVLTIDFEIFVVLLI 213 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~~~~~~--VvLvGHSmGG~val~ya~~~~~-----~~~~V~gvIL~aPv~D~e~~~~~~~ 213 (224)
..+++.+.|+.+.++++..+ |++.||||||.+++..+..... ....|..+.+-+|-..-..++..-.
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRVGN~~Fa~~~~ 281 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQVGNKEFNDRFK 281 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcccCHHHHHHHH
Confidence 34566677777777766555 9999999999999998865311 0124667777778655444544433
No 181
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.011 Score=55.96 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=63.8
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
...-||+-|=| +| ....+.++++|+++|+.|+.+|- -+--|-.-+-++.++|+..+|++...+.+.++++|+|.|
T Consensus 260 d~~av~~SGDG-GW--r~lDk~v~~~l~~~gvpVvGvds--LRYfW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGyS 334 (456)
T COG3946 260 DTVAVFYSGDG-GW--RDLDKEVAEALQKQGVPVVGVDS--LRYFWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGYS 334 (456)
T ss_pred ceEEEEEecCC-ch--hhhhHHHHHHHHHCCCceeeeeh--hhhhhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeec
Confidence 34556665533 23 45667899999999999999983 112344445577899999999999988899999999999
Q ss_pred hhHHHHHHHHH
Q 027344 174 TGCQDIVHYMR 184 (224)
Q Consensus 174 mGG~val~ya~ 184 (224)
.|+-+.=...+
T Consensus 335 fGADvlP~~~n 345 (456)
T COG3946 335 FGADVLPFAYN 345 (456)
T ss_pred ccchhhHHHHH
Confidence 99976544333
No 182
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=96.50 E-value=0.0078 Score=51.58 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 149 MEIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 149 eDL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
|-.++++++|+++ ...++|.|+|.|.||-+++..+..+ + .|+++|..+|.
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~---~-~i~avVa~~ps 55 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRF---P-QISAVVAISPS 55 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHS---S-SEEEEEEES--
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcC---C-CccEEEEeCCc
Confidence 4567888999864 2346899999999999999999986 3 99999999874
No 183
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.47 E-value=0.0096 Score=56.61 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=67.6
Q ss_pred ceEEEECCCCCCC----CChhcHHHHHHHHHhCCcEEEEEcccCCCC--CCCCC-----------ChhhhHHHHHHHHHH
Q 027344 95 QQVIFIGGLTDGF----FATEYLEPLAIALDKERWSLVQFLMTSSYT--GYGTS-----------SLQQDAMEIDQLISY 157 (224)
Q Consensus 95 ~~IVfVHGlg~~~----~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~--G~G~S-----------sl~~~~eDL~~lIe~ 157 (224)
.+|+|--|--++. ..+.++-++|.+| +--+|-..+|--+. -||.. +-++..+|.+++|.+
T Consensus 81 gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~---~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~ 157 (492)
T KOG2183|consen 81 GPIFFYTGNEGDIEWFANNTGFMWDLAPEL---KALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTF 157 (492)
T ss_pred CceEEEeCCcccHHHHHhccchHHhhhHhh---CceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHH
Confidence 5566666644332 1245555677755 45677777752110 12222 124568899999999
Q ss_pred HHhhC--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE-Eccc
Q 027344 158 LINKD--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF-QVLT 202 (224)
Q Consensus 158 L~~~~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL-~aPv 202 (224)
|+++. ...+||.+|-|+||+++..|=.+| |..|.|++. .||+
T Consensus 158 lK~~~~a~~~pvIafGGSYGGMLaAWfRlKY---PHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 158 LKRDLSAEASPVIAFGGSYGGMLAAWFRLKY---PHIVLGALAASAPV 202 (492)
T ss_pred HhhccccccCcEEEecCchhhHHHHHHHhcC---hhhhhhhhhccCce
Confidence 98753 245899999999999999998887 888888765 4565
No 184
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.42 E-value=0.0057 Score=54.83 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhh---CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHHHHHH
Q 027344 147 DAMEIDQLISYLINK---DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVL 211 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~---~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~ 211 (224)
+.+.|.+.+.-+.++ .+.++-.++|||+||.+++..+.++ ++.+..+++.+|-.-+...+.+
T Consensus 116 f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~---p~~F~~y~~~SPSlWw~n~~~l 180 (264)
T COG2819 116 FREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTY---PDCFGRYGLISPSLWWHNEAIL 180 (264)
T ss_pred HHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcC---cchhceeeeecchhhhCCHHHh
Confidence 455555555544432 3566799999999999999999997 8999999999997665555544
No 185
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=96.40 E-value=0.0036 Score=60.12 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=63.6
Q ss_pred CceEEEECCCCCCCCCh-hc-HHHHHHHHHhCCcEEEEEcccCCCCCCCCCC---h-h-hhHHHHHHHHHHHHhh---C-
Q 027344 94 QQQVIFIGGLTDGFFAT-EY-LEPLAIALDKERWSLVQFLMTSSYTGYGTSS---L-Q-QDAMEIDQLISYLINK---D- 162 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~-~y-~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss---l-~-~~~eDL~~lIe~L~~~---~- 162 (224)
.|++|+|||-+--.... .+ .......+..+...|+.+.||-.--||.... . . --.-|+...++++++. +
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 68999999943211111 01 1122334445678889999874322332211 1 0 1245788888888764 2
Q ss_pred -CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 163 -NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 163 -~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+.++|.|+|||.||..+..++.... .......+|.++..
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~-s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPH-SRGLFHKAISMSGN 231 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHh-hHHHHHHHHhhccc
Confidence 4678999999999999877776541 12345555555543
No 186
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.38 E-value=0.0054 Score=55.50 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=71.0
Q ss_pred CCCceEEEECCCCCCC-CChhcHHHHHHHHHhCCcEEEEEcccCCCCC--------CCCC----------C------hhh
Q 027344 92 DYQQQVIFIGGLTDGF-FATEYLEPLAIALDKERWSLVQFLMTSSYTG--------YGTS----------S------LQQ 146 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~-~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G--------~G~S----------s------l~~ 146 (224)
+..|.||-.||.+++- .+..++. +...||.|+.+|.|+.+.. .|.+ + +.+
T Consensus 81 ~~~P~vV~fhGY~g~~g~~~~~l~-----wa~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~ 155 (321)
T COG3458 81 GKLPAVVQFHGYGGRGGEWHDMLH-----WAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRG 155 (321)
T ss_pred CccceEEEEeeccCCCCCcccccc-----ccccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEee
Confidence 4568889899987653 2223332 2347999999999753211 0100 1 112
Q ss_pred hHHHHHHHHHHHHh--hCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 147 DAMEIDQLISYLIN--KDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 147 ~~eDL~~lIe~L~~--~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
...|+..+++.+.. +.+.++|.+-|.|.||.+++..+.- ..+|+++++.-|.
T Consensus 156 v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal----~~rik~~~~~~Pf 209 (321)
T COG3458 156 VFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAAL----DPRIKAVVADYPF 209 (321)
T ss_pred ehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhc----Chhhhcccccccc
Confidence 47888888888864 3456789999999999999887765 6799999988885
No 187
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.22 E-value=0.011 Score=51.30 Aligned_cols=70 Identities=13% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHHHhCCcEEEEEcccCCCC-CCC-------CCChhhhHHHHHHHHHHHHhh-CCCCcEEEEEEchhHHHHHHHHHHhc
Q 027344 117 AIALDKERWSLVQFLMTSSYT-GYG-------TSSLQQDAMEIDQLISYLINK-DNSEGVVLLGHSTGCQDIVHYMRANA 187 (224)
Q Consensus 117 a~~L~~~Gy~Vi~~Dlrss~~-G~G-------~Ssl~~~~eDL~~lIe~L~~~-~~~~~VvLvGHSmGG~val~ya~~~~ 187 (224)
+-.|. .-.+|+++-||-..- .+- ...++--..|+.+..++..++ .+++++||+|||-|+.+++++++++.
T Consensus 39 as~F~-~~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~~ 117 (207)
T PF11288_consen 39 ASAFN-GVCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEEI 117 (207)
T ss_pred hhhhh-cCCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHHh
Confidence 33454 356888887763211 111 111222367888888776654 46789999999999999999999863
No 188
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.90 E-value=0.11 Score=49.14 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhC---C-CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 148 AMEIDQLISYLINKD---N-SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~---~-~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
+-|+-.++.++.+.+ + ..|++++|+|.||.++...++-. |-.++++|=-+...-+.+
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~a---P~~~~~~iDns~~~~p~l 223 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIA---PWLFDGVIDNSSYALPPL 223 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhC---ccceeEEEecCccccchh
Confidence 345555666665432 2 25899999999999887766654 889999998776555443
No 189
>PLN02571 triacylglycerol lipase
Probab=95.89 E-value=0.031 Score=53.11 Aligned_cols=62 Identities=21% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhCCCC--cEEEEEEchhHHHHHHHHHHhcc-----------cccccceEEEEccccChHHHHH
Q 027344 149 MEIDQLISYLINKDNSE--GVVLLGHSTGCQDIVHYMRANAA-----------CSRAVRAAIFQVLTIDFEIFVV 210 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~--~VvLvGHSmGG~val~ya~~~~~-----------~~~~V~gvIL~aPv~D~e~~~~ 210 (224)
+++.+.|+.+.++++.+ +|++.||||||.+++..+..... ....|..++.-+|-..-+.++.
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~dl~~~g~n~~~~~~~~~~~V~v~TFGsPRVGN~~Fa~ 282 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVDIVANGFNRSKSRPNKSCPVTAFVFASPRVGDSDFKK 282 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHHHHHhcccccccccccCcceEEEEeCCCCccCHHHHH
Confidence 33444444444444333 69999999999999988765311 0123666777777554444444
No 190
>PLN00413 triacylglycerol lipase
Probab=95.60 E-value=0.063 Score=51.85 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc-c----cccccceEEEEc-c-ccChHHHHHHHHhhhh
Q 027344 150 EIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA-A----CSRAVRAAIFQV-L-TIDFEIFVVLLIASHN 217 (224)
Q Consensus 150 DL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~-~----~~~~V~gvIL~a-P-v~D~e~~~~~~~~~~n 217 (224)
++.+.++.+.++++..+|++.|||+||.++..++..-. . ...++.+++.-+ | +.|.+...-+..+.++
T Consensus 269 ~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~~L~~~~~~~~~~ri~~VYTFG~PRVGN~~FA~~~~~~l~~ 343 (479)
T PLN00413 269 TILRHLKEIFDQNPTSKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQPRVGDEDFGIFMKDKLKE 343 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHHHHHhccchhhccccceEEEeCCCCCccHHHHHHHHhhhcc
Confidence 45666666666777789999999999999998875310 0 123555666655 4 3555554445454444
No 191
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=95.59 E-value=0.051 Score=50.54 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=36.1
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcc--cccccceEEEEcccc--ChHHHHHHHH
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAA--CSRAVRAAIFQVLTI--DFEIFVVLLI 213 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~--~~~~V~gvIL~aPv~--D~e~~~~~~~ 213 (224)
.+.++|.|||||+|+-++.+.+.+-.. ....|+-+||++.+. |.+....+..
T Consensus 217 ~G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~~~~~W~~~r~ 272 (345)
T PF05277_consen 217 QGERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPSDPEEWRKIRS 272 (345)
T ss_pred CCCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCCCHHHHHHHHH
Confidence 466789999999999999988776421 224589999987543 3444444443
No 192
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.59 E-value=0.058 Score=47.05 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=34.0
Q ss_pred HHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc-ccccccceEEE-EccccC
Q 027344 153 QLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA-ACSRAVRAAIF-QVLTID 204 (224)
Q Consensus 153 ~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~-~~~~~V~gvIL-~aPv~D 204 (224)
+.++.+.++.+. ++++.|||.||.++++.+.... ...++|..++. -+|-..
T Consensus 73 ~yl~~~~~~~~~-~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~ 125 (224)
T PF11187_consen 73 AYLKKIAKKYPG-KIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFS 125 (224)
T ss_pred HHHHHHHHhCCC-CEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCC
Confidence 334444444444 5999999999999999887731 12458888875 566433
No 193
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.51 E-value=0.029 Score=55.59 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=61.3
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCC--cEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHH----HhhCCCCcE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKER--WSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYL----INKDNSEGV 167 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~G--y~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L----~~~~~~~~V 167 (224)
.|.+|++||..--.+...++......|...| ..|..||++. +.|.-.+...++-+..+.++. ..+++..+|
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n---~igG~nI~h~ae~~vSf~r~kvlei~gefpha~I 252 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNN---PIGGANIKHAAEYSVSFDRYKVLEITGEFPHAPI 252 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccC---CCCCcchHHHHHHHHHHhhhhhhhhhccCCCCce
Confidence 5788999997722222222222334444444 4456677753 223234444444444444433 235788899
Q ss_pred EEEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
+|+|.|||..++++..-.. .+..|+++|+++
T Consensus 253 iLvGrsmGAlVachVSpsn--sdv~V~~vVCig 283 (784)
T KOG3253|consen 253 ILVGRSMGALVACHVSPSN--SDVEVDAVVCIG 283 (784)
T ss_pred EEEecccCceeeEEecccc--CCceEEEEEEec
Confidence 9999999988887766554 234599999987
No 194
>PLN02162 triacylglycerol lipase
Probab=95.39 E-value=0.08 Score=51.07 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc-cc----ccccceEEEEc-c-ccChHHHHHHHH
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA-AC----SRAVRAAIFQV-L-TIDFEIFVVLLI 213 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~-~~----~~~V~gvIL~a-P-v~D~e~~~~~~~ 213 (224)
..+|.+.++.+.++.+..++++.|||+||.++..++..-. .. ..++.+++..+ | +.|.+...-+..
T Consensus 261 y~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa~L~~~~~~~l~~~~~~vYTFGqPRVGn~~FA~~~~~ 333 (475)
T PLN02162 261 YYTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPAILAIHGEDELLDKLEGIYTFGQPRVGDEDFGEFMKG 333 (475)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHHHHHHccccccccccceEEEeCCCCccCHHHHHHHHh
Confidence 3456666676666777789999999999999988754210 01 12455666665 4 345554443443
No 195
>PLN02408 phospholipase A1
Probab=94.98 E-value=0.09 Score=49.26 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhCCCC--cEEEEEEchhHHHHHHHHHHhccc---ccccceEEEEccccChHHHHH
Q 027344 149 MEIDQLISYLINKDNSE--GVVLLGHSTGCQDIVHYMRANAAC---SRAVRAAIFQVLTIDFEIFVV 210 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~--~VvLvGHSmGG~val~ya~~~~~~---~~~V~gvIL~aPv~D~e~~~~ 210 (224)
+++.+.|+.+.++++.+ +|++.|||+||.++...+..-... ...|..+..-+|-..-..++.
T Consensus 182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~~Fa~ 248 (365)
T PLN02408 182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDIKTTFKRAPMVTVISFGGPRVGNRSFRR 248 (365)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHHHHhcCCCCceEEEEcCCCCcccHHHHH
Confidence 34445555555555543 599999999999999887764211 113454445566544444444
No 196
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=94.90 E-value=0.33 Score=47.60 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=70.3
Q ss_pred CceEEEE-----CCCC-CCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCC-c
Q 027344 94 QQQVIFI-----GGLT-DGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSE-G 166 (224)
Q Consensus 94 ~~~IVfV-----HGlg-~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~-~ 166 (224)
+.++|+| ||-+ ++++. .-.+..+|. .|+.|+.+.+.. .+-.|+ ++.+...-.++.++.+.+..+.. |
T Consensus 68 krP~vViDPRAGHGpGIGGFK~---dSevG~AL~-~GHPvYFV~F~p-~P~pgQ-Tl~DV~~ae~~Fv~~V~~~hp~~~k 141 (581)
T PF11339_consen 68 KRPFVVIDPRAGHGPGIGGFKP---DSEVGVALR-AGHPVYFVGFFP-EPEPGQ-TLEDVMRAEAAFVEEVAERHPDAPK 141 (581)
T ss_pred CCCeEEeCCCCCCCCCccCCCc---ccHHHHHHH-cCCCeEEEEecC-CCCCCC-cHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555555 6654 23332 234666776 699998887632 223344 45555566677777777766544 8
Q ss_pred EEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 167 VVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 167 VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
++|+|..-||..++-++..+ ++.+.-+|+-+.+.++
T Consensus 142 p~liGnCQgGWa~~mlAA~~---Pd~~gplvlaGaPlsy 177 (581)
T PF11339_consen 142 PNLIGNCQGGWAAMMLAALR---PDLVGPLVLAGAPLSY 177 (581)
T ss_pred ceEEeccHHHHHHHHHHhcC---cCccCceeecCCCccc
Confidence 99999999999999999886 8888888887755553
No 197
>PLN02209 serine carboxypeptidase
Probab=94.71 E-value=0.31 Score=46.56 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHhhC---CCCcEEEEEEchhHHHHHHHHHHhcc-------cccccceEEEEccccChHH
Q 027344 146 QDAMEIDQLISYLINKD---NSEGVVLLGHSTGCQDIVHYMRANAA-------CSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 146 ~~~eDL~~lIe~L~~~~---~~~~VvLvGHSmGG~val~ya~~~~~-------~~~~V~gvIL~aPv~D~e~ 207 (224)
++++|+.++++.+.+++ ...+++|.|.|+||.-+-.++..-.. ..-.++|+++-.|+.|++.
T Consensus 145 ~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~~~ 216 (437)
T PLN02209 145 SEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHIEF 216 (437)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccChhh
Confidence 34566666666554443 34689999999999865555443210 1247889999999988653
No 198
>PLN02310 triacylglycerol lipase
Probab=94.68 E-value=0.12 Score=49.13 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcc--cccccceEEEEccccChHHHHH
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAA--CSRAVRAAIFQVLTIDFEIFVV 210 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~--~~~~V~gvIL~aPv~D~e~~~~ 210 (224)
.++|..+++...++....+|++.|||+||.+++..+..-.. ....|.-+..-+|-..-+.++.
T Consensus 192 l~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~v~vyTFGsPRVGN~~Fa~ 256 (405)
T PLN02310 192 MQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEAATTIPDLFVSVISFGAPRVGNIAFKE 256 (405)
T ss_pred HHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHHHHHhCcCcceeEEEecCCCcccHHHHH
Confidence 34444444443322223579999999999999887765311 1223554444456444333333
No 199
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.55 E-value=0.57 Score=45.56 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=72.0
Q ss_pred CCceEEEECCCC-CC--C--CChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------------ChhhhHHHHHH
Q 027344 93 YQQQVIFIGGLT-DG--F--FATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------------SLQQDAMEIDQ 153 (224)
Q Consensus 93 ~~~~IVfVHGlg-~~--~--~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------------sl~~~~eDL~~ 153 (224)
.+|+.|+|+|=+ ++ | .....+..+|+ +-|-.|+.+++| -||.+ +..+..+||++
T Consensus 85 ~gPiFLmIGGEgp~~~~wv~~~~~~~~~~Ak---kfgA~v~~lEHR----FYG~S~P~~~~st~nlk~LSs~QALaDla~ 157 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPESDKWVGNENLTWLQWAK---KFGATVFQLEHR----FYGQSSPIGDLSTSNLKYLSSLQALADLAE 157 (514)
T ss_pred CCceEEEEcCCCCCCCCccccCcchHHHHHH---HhCCeeEEeeee----ccccCCCCCCCcccchhhhhHHHHHHHHHH
Confidence 468889999854 22 2 22223344565 457889999885 66643 12356899999
Q ss_pred HHHHHHhhCC---CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 154 LISYLINKDN---SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 154 lIe~L~~~~~---~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
+|+.+..+.+ ..+.|.+|-|+-|.++..+=+++ |+-|.|.|..+.+
T Consensus 158 fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~y---Pel~~GsvASSap 206 (514)
T KOG2182|consen 158 FIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKY---PELTVGSVASSAP 206 (514)
T ss_pred HHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhC---chhheeecccccc
Confidence 9999987653 24899999999999998887777 9999998886543
No 200
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.13 Score=47.00 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=61.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCC----cEEEEEcccCC---CCCCCCCChhhhHHHHH-HHHHHHHhhCC-
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKER----WSLVQFLMTSS---YTGYGTSSLQQDAMEID-QLISYLINKDN- 163 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~G----y~Vi~~Dlrss---~~G~G~Ssl~~~~eDL~-~lIe~L~~~~~- 163 (224)
+-|++++.||- ++....-+..+.+.|.++| -.++.+|+--. ..-++ ...+..++|. +++=++.+.++
T Consensus 97 k~pvl~~~DG~--~~~~~g~i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~~--~n~~~~~~L~~eLlP~v~~~yp~ 172 (299)
T COG2382 97 KYPVLYLQDGQ--DWFRSGRIPRILDSLIAAGEIPPAILVGIDYIDVKKRREELH--CNEAYWRFLAQELLPYVEERYPT 172 (299)
T ss_pred cccEEEEeccH--HHHhcCChHHHHHHHHHcCCCCCceEEecCCCCHHHHHHHhc--ccHHHHHHHHHHhhhhhhccCcc
Confidence 56899999984 2211111223444444443 34455554100 00011 1123334433 34444444332
Q ss_pred ---CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 164 ---SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 164 ---~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
...=+|.|-|+||.+++..+..+ ++.+..|+.++|..+.-
T Consensus 173 ~~~a~~r~L~G~SlGG~vsL~agl~~---Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 173 SADADGRVLAGDSLGGLVSLYAGLRH---PERFGHVLSQSGSFWWT 215 (299)
T ss_pred cccCCCcEEeccccccHHHHHHHhcC---chhhceeeccCCccccC
Confidence 34578999999999999999998 99999999999976643
No 201
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=94.07 E-value=0.46 Score=41.47 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=43.7
Q ss_pred CcEEEEEcccCCC-C--CCCCCChhhhHHH-HHHHHHHHHhh-CCCCcEEEEEEchhHHHHHHHHHHhcccc---cccce
Q 027344 124 RWSLVQFLMTSSY-T--GYGTSSLQQDAME-IDQLISYLINK-DNSEGVVLLGHSTGCQDIVHYMRANAACS---RAVRA 195 (224)
Q Consensus 124 Gy~Vi~~Dlrss~-~--G~G~Ssl~~~~eD-L~~lIe~L~~~-~~~~~VvLvGHSmGG~val~ya~~~~~~~---~~V~g 195 (224)
||.+..++++... + |.+...+++.+++ .+.+.+.+++. ...++++++|+|.|+.++...+++..... ...-.
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 5667777775432 1 2333344443333 23333333321 15678999999999999999998863211 12234
Q ss_pred EEEEc
Q 027344 196 AIFQV 200 (224)
Q Consensus 196 vIL~a 200 (224)
+||++
T Consensus 82 fVl~g 86 (225)
T PF08237_consen 82 FVLIG 86 (225)
T ss_pred EEEec
Confidence 66665
No 202
>PLN03037 lipase class 3 family protein; Provisional
Probab=94.07 E-value=0.16 Score=49.58 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcc-cc--cccceEEEEccccChHHHHH
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAA-CS--RAVRAAIFQVLTIDFEIFVV 210 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~-~~--~~V~gvIL~aPv~D~e~~~~ 210 (224)
.++|..+++..++.....+|++.|||+||.+++..+..-.. .+ ..|..+..-+|-..-..++.
T Consensus 301 l~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~~~p~~~~VtvyTFGsPRVGN~aFA~ 366 (525)
T PLN03037 301 MEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAARSVPALSNISVISFGAPRVGNLAFKE 366 (525)
T ss_pred HHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHHhCCCCCCeeEEEecCCCccCHHHHH
Confidence 45555555554432123469999999999999887754311 11 14554445556544443333
No 203
>PLN02324 triacylglycerol lipase
Probab=93.95 E-value=0.23 Score=47.28 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhCCC--CcEEEEEEchhHHHHHHHHHH
Q 027344 149 MEIDQLISYLINKDNS--EGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~--~~VvLvGHSmGG~val~ya~~ 185 (224)
+.+.+.|+.|.++++. .+|++.|||+||.+++..+..
T Consensus 197 eqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 197 EQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 3445555555555554 369999999999999887754
No 204
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=93.90 E-value=0.43 Score=43.66 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHhh---CCCCcEEEEEEchhHHHHHHHHHH---hccc----ccccceEEEEccccChHH
Q 027344 145 QQDAMEIDQLISYLINK---DNSEGVVLLGHSTGCQDIVHYMRA---NAAC----SRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~~---~~~~~VvLvGHSmGG~val~ya~~---~~~~----~~~V~gvIL~aPv~D~e~ 207 (224)
++.++|+.++++.+.++ +...+++|.|-|+||.-+-.++.+ .... .-.++|+++-.|+.|+..
T Consensus 113 ~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp~~ 185 (415)
T PF00450_consen 113 DQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDPRI 185 (415)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccccc
Confidence 34566666666655543 345689999999999976555544 2111 457999999999998753
No 205
>PLN02934 triacylglycerol lipase
Probab=93.88 E-value=0.089 Score=51.20 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHH
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMR 184 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~ 184 (224)
+.+...++.++++++..+|++.|||+||.++..++.
T Consensus 305 ~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 305 YAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 346677777777788889999999999999998864
No 206
>PLN02802 triacylglycerol lipase
Probab=93.50 E-value=0.25 Score=48.14 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCC--CcEEEEEEchhHHHHHHHHHHhcc-cc--cccceEEEEccccChHHHHH
Q 027344 150 EIDQLISYLINKDNS--EGVVLLGHSTGCQDIVHYMRANAA-CS--RAVRAAIFQVLTIDFEIFVV 210 (224)
Q Consensus 150 DL~~lIe~L~~~~~~--~~VvLvGHSmGG~val~ya~~~~~-~~--~~V~gvIL~aPv~D~e~~~~ 210 (224)
++.+-|+.+.++++. .+|++.|||+||.++...+..-.. .. ..|..+..-+|-..-+.++.
T Consensus 313 qVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL~~~~~~~~pV~vyTFGsPRVGN~aFA~ 378 (509)
T PLN02802 313 SVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADELATCVPAAPPVAVFSFGGPRVGNRAFAD 378 (509)
T ss_pred HHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHHHHhCCCCCceEEEEcCCCCcccHHHHH
Confidence 444444555555543 369999999999999987765311 11 13554455566444444444
No 207
>PLN02847 triacylglycerol lipase
Probab=93.41 E-value=0.27 Score=48.84 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHH
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
+++...+..+.++++.-+|+++|||+||.++......
T Consensus 235 ~~i~~~L~kal~~~PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 235 KLSTPCLLKALDEYPDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccChHHHHHHHHHHH
Confidence 3444445555556777799999999999998876554
No 208
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=93.32 E-value=0.2 Score=43.61 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=45.5
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEE-EEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSL-VQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~V-i~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+..|||..||+-+. ..+.+|. ...+|.| +.+||| . ++-+. | +. ..++|.||+
T Consensus 10 ~~~LilfF~GWg~d~---~~f~hL~---~~~~~D~l~~yDYr----~-----l~~d~-~-------~~---~y~~i~lvA 63 (213)
T PF04301_consen 10 GKELILFFAGWGMDP---SPFSHLI---LPENYDVLICYDYR----D-----LDFDF-D-------LS---GYREIYLVA 63 (213)
T ss_pred CCeEEEEEecCCCCh---HHhhhcc---CCCCccEEEEecCc----c-----ccccc-c-------cc---cCceEEEEE
Confidence 457899999998432 2222221 1245555 455764 1 11111 1 11 357899999
Q ss_pred EchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 172 HSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 172 HSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
+|||-.++.+++... +++..|.++
T Consensus 64 WSmGVw~A~~~l~~~-----~~~~aiAIN 87 (213)
T PF04301_consen 64 WSMGVWAANRVLQGI-----PFKRAIAIN 87 (213)
T ss_pred EeHHHHHHHHHhccC-----CcceeEEEE
Confidence 999999998876543 456666554
No 209
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=92.69 E-value=0.37 Score=48.01 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=65.8
Q ss_pred ceEEEECCCCC----CCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh-----CCCC
Q 027344 95 QQVIFIGGLTD----GFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK-----DNSE 165 (224)
Q Consensus 95 ~~IVfVHGlg~----~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~-----~~~~ 165 (224)
-.|+..||-|- +..-..|++..+.+| |+.|+.+||.-. ....+++-.+++--.-.|+.++ ..++
T Consensus 397 sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL---~cPiiSVdYSLA----PEaPFPRaleEv~fAYcW~inn~allG~TgE 469 (880)
T KOG4388|consen 397 SLIVHCHGGGFVAQSSKSHEPYLRSWAQAL---GCPIISVDYSLA----PEAPFPRALEEVFFAYCWAINNCALLGSTGE 469 (880)
T ss_pred eEEEEecCCceeeeccccccHHHHHHHHHh---CCCeEEeeeccC----CCCCCCcHHHHHHHHHHHHhcCHHHhCcccc
Confidence 35666788432 112256888888765 789999998421 2334566677777666676642 2468
Q ss_pred cEEEEEEchhHHHHHHHHHHhcc-cccccceEEEEcc
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAA-CSRAVRAAIFQVL 201 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~-~~~~V~gvIL~aP 201 (224)
+|+++|-|.||++++..+.+... +-.--+|++|.=|
T Consensus 470 riv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~ 506 (880)
T KOG4388|consen 470 RIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYP 506 (880)
T ss_pred eEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecC
Confidence 99999999999987776665321 2345578888654
No 210
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=92.57 E-value=0.087 Score=52.15 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=76.1
Q ss_pred CCceEEEE-CCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--------ChhhhHHHHHHHHHHHHhh--
Q 027344 93 YQQQVIFI-GGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--------SLQQDAMEIDQLISYLINK-- 161 (224)
Q Consensus 93 ~~~~IVfV-HGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--------sl~~~~eDL~~lIe~L~~~-- 161 (224)
+.|++|+- +||.= .-.+.+....+...++|...+..++|+.+ -||.- ...+.++|..++.+.|.++
T Consensus 420 ~~pTll~aYGGF~v--sltP~fs~~~~~WLerGg~~v~ANIRGGG-EfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgi 496 (648)
T COG1505 420 ENPTLLYAYGGFNI--SLTPRFSGSRKLWLERGGVFVLANIRGGG-EFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGI 496 (648)
T ss_pred CCceEEEecccccc--ccCCccchhhHHHHhcCCeEEEEecccCC-ccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCC
Confidence 35666663 44432 22333334446666788888888987432 23321 2346799999999999875
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccCh
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~ 205 (224)
...+++-+-|-|=||.++-..+.++ |+-+.++|+.-|+.|.
T Consensus 497 tspe~lgi~GgSNGGLLvg~alTQr---PelfgA~v~evPllDM 537 (648)
T COG1505 497 TSPEKLGIQGGSNGGLLVGAALTQR---PELFGAAVCEVPLLDM 537 (648)
T ss_pred CCHHHhhhccCCCCceEEEeeeccC---hhhhCceeeccchhhh
Confidence 2356899999999999998888887 9999999999998774
No 211
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=92.56 E-value=1.4 Score=42.54 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=37.8
Q ss_pred CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
..++-...|-|.||--++..++++ |+..+|||.-+|......
T Consensus 113 ~p~~sY~~GcS~GGRqgl~~AQry---P~dfDGIlAgaPA~~~~~ 154 (474)
T PF07519_consen 113 APKYSYFSGCSTGGRQGLMAAQRY---PEDFDGILAGAPAINWTH 154 (474)
T ss_pred CCCceEEEEeCCCcchHHHHHHhC---hhhcCeEEeCCchHHHHH
Confidence 457799999999999999999998 999999999999977543
No 212
>PLN02719 triacylglycerol lipase
Probab=92.53 E-value=0.42 Score=46.71 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCC-----CcEEEEEEchhHHHHHHHHHH
Q 027344 149 MEIDQLISYLINKDNS-----EGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~-----~~VvLvGHSmGG~val~ya~~ 185 (224)
+++.+.|+.|.++++. .+|++.|||+||.+++..+..
T Consensus 277 eQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 277 EQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 3444445555554432 479999999999999987754
No 213
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=92.22 E-value=1 Score=43.08 Aligned_cols=59 Identities=5% Similarity=0.064 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhC---CCCcEEEEEEchhHHHHHHHHHHhcc-------cccccceEEEEccccChH
Q 027344 148 AMEIDQLISYLINKD---NSEGVVLLGHSTGCQDIVHYMRANAA-------CSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~---~~~~VvLvGHSmGG~val~ya~~~~~-------~~~~V~gvIL~aPv~D~e 206 (224)
++|+.++++.+.+++ ...+++|.|.|+||.-+-.++.+-.. .+-.++|+++-.|+.|++
T Consensus 145 a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 145 VKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMD 213 (433)
T ss_pred HHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCch
Confidence 345555555444333 35689999999999866665544210 123788999998877765
No 214
>PLN02753 triacylglycerol lipase
Probab=92.15 E-value=0.51 Score=46.26 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhCC-----CCcEEEEEEchhHHHHHHHHHH
Q 027344 149 MEIDQLISYLINKDN-----SEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 149 eDL~~lIe~L~~~~~-----~~~VvLvGHSmGG~val~ya~~ 185 (224)
+++.+.|+.|.++++ ..+|++.|||+||.+++..+..
T Consensus 291 eQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 291 EQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 444444555554443 3589999999999999988754
No 215
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=0.59 Score=46.50 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHHHHhh-CC-CCcEEEEEEchhHHHHHHHHHHhc--c------cccccceEEEEccc
Q 027344 153 QLISYLINK-DN-SEGVVLLGHSTGCQDIVHYMRANA--A------CSRAVRAAIFQVLT 202 (224)
Q Consensus 153 ~lIe~L~~~-~~-~~~VvLvGHSmGG~val~ya~~~~--~------~~~~V~gvIL~aPv 202 (224)
++++.|.+. .+ .++|+-+||||||..+-..+..-. . -...-+|+|+.+-+
T Consensus 512 ~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 512 ELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred HHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 444444432 23 678999999999999888776631 1 12366788888744
No 216
>PLN02761 lipase class 3 family protein
Probab=91.22 E-value=0.73 Score=45.15 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhC------CCCcEEEEEEchhHHHHHHHHHH
Q 027344 150 EIDQLISYLINKD------NSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 150 DL~~lIe~L~~~~------~~~~VvLvGHSmGG~val~ya~~ 185 (224)
++.+.|+.|.+++ ...+|++.|||+||.++...+..
T Consensus 273 qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 273 QVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 3444444444444 22469999999999999987754
No 217
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=90.48 E-value=2.2 Score=36.52 Aligned_cols=103 Identities=10% Similarity=0.101 Sum_probs=59.5
Q ss_pred EEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCC--CcEEEEEEch
Q 027344 97 VIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNS--EGVVLLGHST 174 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~--~~VvLvGHSm 174 (224)
+|+|=||.+ ....++.+.++...+.|+.++.+-.+...--+.. .....-++.+++.+.+.... .+|++=..|+
T Consensus 2 lvvl~gW~g--A~~~hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~il~H~FSn 76 (240)
T PF05705_consen 2 LVVLLGWMG--AKPKHLAKYSDLYQDPGFDILLVTSPPADFFWPS---KRLAPAADKLLELLSDSQSASPPPILFHSFSN 76 (240)
T ss_pred EEEEEeCCC--CCHHHHHHHHHHHHhcCCeEEEEeCCHHHHeeec---cchHHHHHHHHHHhhhhccCCCCCEEEEEEEC
Confidence 444447775 3356777777777779999998754211101111 12223334444555442222 3899999999
Q ss_pred hHHHHHHHHHHh-c------ccccccceEEEEccccC
Q 027344 175 GCQDIVHYMRAN-A------ACSRAVRAAIFQVLTID 204 (224)
Q Consensus 175 GG~val~ya~~~-~------~~~~~V~gvIL~aPv~D 204 (224)
||...+..+... . ..-.+|+|+|+-+.+..
T Consensus 77 GG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~ 113 (240)
T PF05705_consen 77 GGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGI 113 (240)
T ss_pred chHHHHHHHHHHHHhcccccccccccceeEEeCCCCc
Confidence 777777665531 0 11235999999776544
No 218
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=90.12 E-value=0.5 Score=43.51 Aligned_cols=67 Identities=15% Similarity=-0.016 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcc-c---ccccceEEEEcc-ccChHHHHHHHHhh
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAA-C---SRAVRAAIFQVL-TIDFEIFVVLLIAS 215 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~-~---~~~V~gvIL~aP-v~D~e~~~~~~~~~ 215 (224)
+.+.+.++.|..+++.-+|++-|||+||.++...+..-.. . +.+|+-+-.-.| +.|.+....+.+..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~PRvGn~~fa~~~d~~~ 226 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQPRVGNLAFAEWHDELV 226 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCcccHHHHHHHHhhC
Confidence 5566666666667777889999999999999887765311 1 123333333446 56777766665554
No 219
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=89.86 E-value=1.5 Score=36.35 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=45.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD 162 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~ 162 (224)
.+++|+++||..+..-....-..+.++|.++|..+...-+. ..||+........+-.+.+++++.+..
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p--~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFP--GEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEET--T-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcC--cCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 46899999998765433344456888999999876666553 346766555555555677777776643
No 220
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=89.80 E-value=0.58 Score=43.09 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
..+.-++...+++.++.-+|.|-|||+||.++..+-.++ .+-.|...+|-
T Consensus 259 ySa~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f-----glP~VaFesPG 308 (425)
T KOG4540|consen 259 YSAALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF-----GLPVVAFESPG 308 (425)
T ss_pred hHHHHHHHHHHHHhCCCceEEEeccccchHHHHHhcccc-----CCceEEecCch
Confidence 334444555556677888999999999999998887776 45556666664
No 221
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=89.80 E-value=0.58 Score=43.09 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccc
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
..+.-++...+++.++.-+|.|-|||+||.++..+-.++ .+-.|...+|-
T Consensus 259 ySa~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f-----glP~VaFesPG 308 (425)
T COG5153 259 YSAALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF-----GLPVVAFESPG 308 (425)
T ss_pred hHHHHHHHHHHHHhCCCceEEEeccccchHHHHHhcccc-----CCceEEecCch
Confidence 334444555556677888999999999999998887776 45556666664
No 222
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=89.47 E-value=1.2 Score=42.55 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=69.1
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC----------ChhhhHHHHHHHHHHHHhh
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS----------SLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S----------sl~~~~eDL~~lIe~L~~~ 161 (224)
..+|+|++--|.+-... +....+...|. | +-+.+.+| -|+.| ++.+.++|.+.+++.++..
T Consensus 61 ~drPtV~~T~GY~~~~~--p~r~Ept~Lld--~-NQl~vEhR----fF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~i 131 (448)
T PF05576_consen 61 FDRPTVLYTEGYNVSTS--PRRSEPTQLLD--G-NQLSVEHR----FFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPI 131 (448)
T ss_pred CCCCeEEEecCcccccC--ccccchhHhhc--c-ceEEEEEe----eccCCCCCCCCcccccHhHhhHHHHHHHHHHHhh
Confidence 46788898888764322 22234555554 2 23344553 34433 4667899999999999877
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE-Eccc
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF-QVLT 202 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL-~aPv 202 (224)
++ .+=+--|-|-||+.++.|=.-+ |+.|++.|. +||.
T Consensus 132 Y~-~kWISTG~SKGGmTa~y~rrFy---P~DVD~tVaYVAP~ 169 (448)
T PF05576_consen 132 YP-GKWISTGGSKGGMTAVYYRRFY---PDDVDGTVAYVAPN 169 (448)
T ss_pred cc-CCceecCcCCCceeEEEEeeeC---CCCCCeeeeeeccc
Confidence 75 4688999999999998886665 999999988 6774
No 223
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=88.46 E-value=4.3 Score=39.63 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=61.7
Q ss_pred eCCC-CceEEEECCCC--CCCCChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhh--CC
Q 027344 90 TGDY-QQQVIFIGGLT--DGFFATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINK--DN 163 (224)
Q Consensus 90 ~g~~-~~~IVfVHGlg--~~~~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~--~~ 163 (224)
.|+- +|..|+.-|+- |++. .|+ +++. -|..++.+ |.|-.++.|-. .-+++-+.|.++|+...+. +.
T Consensus 284 PGD~KPPL~VYFSGyR~aEGFE--gy~--MMk~---Lg~PfLL~~DpRleGGaFYl-Gs~eyE~~I~~~I~~~L~~LgF~ 355 (511)
T TIGR03712 284 PGDFKPPLNVYFSGYRPAEGFE--GYF--MMKR---LGAPFLLIGDPRLEGGAFYL-GSDEYEQGIINVIQEKLDYLGFD 355 (511)
T ss_pred CcCCCCCeEEeeccCcccCcch--hHH--HHHh---cCCCeEEeeccccccceeee-CcHHHHHHHHHHHHHHHHHhCCC
Confidence 4553 45678888864 3332 222 3343 35666555 65544333311 1133445566666655544 34
Q ss_pred CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChH
Q 027344 164 SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 164 ~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
.+.+||-|-|||..-+++|..+. .-.++|+-=|....-
T Consensus 356 ~~qLILSGlSMGTfgAlYYga~l-----~P~AIiVgKPL~NLG 393 (511)
T TIGR03712 356 HDQLILSGLSMGTFGALYYGAKL-----SPHAIIVGKPLVNLG 393 (511)
T ss_pred HHHeeeccccccchhhhhhcccC-----CCceEEEcCcccchh
Confidence 56799999999999999999875 455666666654433
No 224
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=87.95 E-value=3.7 Score=38.92 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=62.6
Q ss_pred CCceEEEECCCCCCC----CChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEE
Q 027344 93 YQQQVIFIGGLTDGF----FATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVV 168 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~----~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~Vv 168 (224)
+...||++||.+-+- ....-|..+++.++++|+-.+ +|+ .|.|||.. +++|+.-|+.+++... + +
T Consensus 170 ~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~-~D~--AYQGF~~G-leeDa~~lR~~a~~~~------~-~ 238 (396)
T COG1448 170 PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPF-FDI--AYQGFADG-LEEDAYALRLFAEVGP------E-L 238 (396)
T ss_pred CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeee-eeh--hhhhhccc-hHHHHHHHHHHHHhCC------c-E
Confidence 456799999987442 345667789999999998665 576 47788874 7777777777666321 2 7
Q ss_pred EEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 169 LLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 169 LvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
||..|.-=...++ .+||.++++++.
T Consensus 239 lva~S~SKnfgLY--------gERVGa~~vva~ 263 (396)
T COG1448 239 LVASSFSKNFGLY--------GERVGALSVVAE 263 (396)
T ss_pred EEEehhhhhhhhh--------hhccceeEEEeC
Confidence 8877765443322 678888888764
No 225
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=87.54 E-value=6.8 Score=36.72 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=51.7
Q ss_pred CceEEEECCCCCCCCChhc--HHHHHHHHHh-CCcEEEEE-cccCCCCCCCCCChh--------------------hhHH
Q 027344 94 QQQVIFIGGLTDGFFATEY--LEPLAIALDK-ERWSLVQF-LMTSSYTGYGTSSLQ--------------------QDAM 149 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y--~~~La~~L~~-~Gy~Vi~~-Dlrss~~G~G~Ssl~--------------------~~~e 149 (224)
+..|+++.|-.+.+-..++ .-.|...|++ .+-+++++ |. |-|...++ ...+
T Consensus 31 k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~-----GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~ 105 (423)
T COG3673 31 KRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDE-----GVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQ 105 (423)
T ss_pred ceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecC-----CcccccchhhHHHHHhhhhhhhHHHHHHHHHH
Confidence 5667777886554432221 2235555554 34454443 42 33332211 2355
Q ss_pred HHHHHHHHHHhh-CCCCcEEEEEEchhHHHHHHHHHH
Q 027344 150 EIDQLISYLINK-DNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 150 DL~~lIe~L~~~-~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
.|...-.+|.+. .++++|+++|.|-|+.++.-++..
T Consensus 106 nI~~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 106 NIREAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 666666666654 368899999999999998877764
No 226
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.22 E-value=3.4 Score=35.58 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=54.2
Q ss_pred cHHHHHHHHHhCCcEEEEEccc---CCCCCCCCCChhhhHHHHHHHHHHHHhh-CCCCcEEEEEEchhHHHHHHHHHHhc
Q 027344 112 YLEPLAIALDKERWSLVQFLMT---SSYTGYGTSSLQQDAMEIDQLISYLINK-DNSEGVVLLGHSTGCQDIVHYMRANA 187 (224)
Q Consensus 112 y~~~La~~L~~~Gy~Vi~~Dlr---ss~~G~G~Ssl~~~~eDL~~lIe~L~~~-~~~~~VvLvGHSmGG~val~ya~~~~ 187 (224)
....+++++++.-..+++++=- +=+.+|- .-.+-++--++.-+|++++ .++ .-++-|-|||+..+.++.-++
T Consensus 47 ~v~ala~fie~G~vQlft~~gldsESf~a~h~--~~adr~~rH~AyerYv~eEalpg-s~~~sgcsmGayhA~nfvfrh- 122 (227)
T COG4947 47 MVDALASFIEEGLVQLFTLSGLDSESFLATHK--NAADRAERHRAYERYVIEEALPG-STIVSGCSMGAYHAANFVFRH- 122 (227)
T ss_pred cHHHHHHHHhcCcEEEEEecccchHhHhhhcC--CHHHHHHHHHHHHHHHHHhhcCC-CccccccchhhhhhhhhheeC-
Confidence 4556778777544555555410 0001111 1122344344555566654 343 477789999999999999998
Q ss_pred ccccccceEEEEccccC
Q 027344 188 ACSRAVRAAIFQVLTID 204 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv~D 204 (224)
|+-..++|.++.+-|
T Consensus 123 --P~lftkvialSGvYd 137 (227)
T COG4947 123 --PHLFTKVIALSGVYD 137 (227)
T ss_pred --hhHhhhheeecceee
Confidence 899999999987755
No 227
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=85.66 E-value=12 Score=36.33 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHhh---CCCCcEEEEEEchhHHHHHHHHHH----hc---ccccccceEEEEccccChH
Q 027344 147 DAMEIDQLISYLINK---DNSEGVVLLGHSTGCQDIVHYMRA----NA---ACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~---~~~~~VvLvGHSmGG~val~ya~~----~~---~~~~~V~gvIL~aPv~D~e 206 (224)
.++|+.+.++...++ +..++++|.|-|++|+.+=.++.+ +. ...-.++|+++=.|+.|.+
T Consensus 147 ~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~~ 216 (454)
T KOG1282|consen 147 TAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTDPE 216 (454)
T ss_pred HHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccCcc
Confidence 367766655544433 456789999999999666555544 21 1134889999988887754
No 228
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.23 E-value=11 Score=34.48 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=62.4
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCC-C-CCChhhhHHHHHHHHHHHHh---hC---CCC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGY-G-TSSLQQDAMEIDQLISYLIN---KD---NSE 165 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~-G-~Ssl~~~~eDL~~lIe~L~~---~~---~~~ 165 (224)
+.+||++---|.+|...... .-.++|......++++.|.. .+-+ . ..+.+.-.+--.++++.+.+ .. .-.
T Consensus 32 R~~lvV~~pTGtGWVdp~a~-~a~E~l~~GD~A~va~QYSy-lPSw~sfl~dr~~a~~a~~aL~~aV~~~~~~lP~~~RP 109 (289)
T PF10081_consen 32 RKVLVVATPTGTGWVDPWAV-DALEYLYGGDVAIVAMQYSY-LPSWLSFLVDRDAAREAARALFEAVYARWSTLPEDRRP 109 (289)
T ss_pred cceEEEEcCCCCCccCHHHH-hHHHHHhCCCeEEEEecccc-ccchHHHhcccchHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 45555554444455432222 23466666678888887731 1110 0 01111222333344444432 12 234
Q ss_pred cEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHHHHH
Q 027344 166 GVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVV 210 (224)
Q Consensus 166 ~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~ 210 (224)
|++|.|-|+|++-+.........-..+++|+++.+|+........
T Consensus 110 kL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s~~w~~ 154 (289)
T PF10081_consen 110 KLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFSPLWRE 154 (289)
T ss_pred eEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCChhHHH
Confidence 799999999988666544332223568999999999876554443
No 229
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=85.05 E-value=4 Score=40.52 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=48.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~ 161 (224)
.+.++++|||..+......--..|.++|..+|..|-.+-++ ..+|+.+...+..+-++++++++.+.
T Consensus 550 i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p--~e~H~~~~~~~~~~~~~~~~~~~~~~ 616 (620)
T COG1506 550 IKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFP--DEGHGFSRPENRVKVLKEILDWFKRH 616 (620)
T ss_pred cCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeC--CCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 56789999998875443444556889999999888776663 34787777566666778888887654
No 230
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=82.48 E-value=7.2 Score=33.57 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
+.++.+|++-|+.++-.++- -..|.+.|.++|+.++.+|
T Consensus 20 ~~~~~viW~TGLSGsGKSTi-A~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTI-ANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCCeEEEeecCCCCCHHHH-HHHHHHHHHHcCCeEEEec
Confidence 35689999999987655543 3458889999999999998
No 231
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=82.14 E-value=2.9 Score=40.81 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhh---CC--CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccChHH
Q 027344 147 DAMEIDQLISYLINK---DN--SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~---~~--~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D~e~ 207 (224)
.-+|+..+.+.+.++ +. ..+.+|+|-|+||+=+-+++..-.......+++|++.++.+...
T Consensus 175 ~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng 240 (498)
T COG2939 175 AGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNG 240 (498)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCC
Confidence 345666666655542 22 34899999999999988888775222346889999988766554
No 232
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.47 E-value=7 Score=35.84 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=70.7
Q ss_pred CCCCCCCCCccccccccccEEEEeCCCCceEEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCC
Q 027344 56 SGGQDMGGPVVMGKNQFRGVLFKYGPKPVQVAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSS 135 (224)
Q Consensus 56 ~~~~~~~~p~~m~~~~~~g~l~~y~~~~~~v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss 135 (224)
++|..+--|.+|.++.=...+-- |......+.-|++-|-+++....+| .|.+-+.+++...+.+.-
T Consensus 84 asp~a~~~p~~mP~~~~~A~~~~---------liPQK~~~KOG~~a~tgdh~y~rr~--~L~~p~~k~~i~tmvle~--- 149 (371)
T KOG1551|consen 84 ASPAASNWPKPMPPESRTARVAW---------LIPQKMADLCLSWALTGDHVYTRRL--VLSKPINKREIATMVLEK--- 149 (371)
T ss_pred cCchhhhCccCCCCcccceeeee---------ecccCcCCeeEEEeecCCceeEeee--eecCchhhhcchheeeec---
Confidence 55666666777765543332222 2223345677888887776544443 255666667777666653
Q ss_pred CCCCCCCChhh-------hHHHHH----HHHHHHHh------hCCCCcEEEEEEchhHHHHHHHHHHhcccccccceE
Q 027344 136 YTGYGTSSLQQ-------DAMEID----QLISYLIN------KDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAA 196 (224)
Q Consensus 136 ~~G~G~Ssl~~-------~~eDL~----~lIe~L~~------~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gv 196 (224)
+-||...... .+.|+- +.|++... ..+..+.-|+|-||||.++......+ +..|.-+
T Consensus 150 -pfYgqr~p~~q~~~~Le~vtDlf~mG~A~I~E~~~lf~Ws~~~g~g~~~~~g~Smgg~~a~~vgS~~---q~Pva~~ 223 (371)
T KOG1551|consen 150 -PFYGQRVPEEQIIHMLEYVTDLFKMGRATIQEFVKLFTWSSADGLGNLNLVGRSMGGDIANQVGSLH---QKPVATA 223 (371)
T ss_pred -ccccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccccccCcccceeeeeecccHHHHhhcccC---CCCcccc
Confidence 4566543221 234432 33343332 34567899999999999887766544 4555444
No 233
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=79.00 E-value=5.7 Score=33.36 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=36.5
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLIS 156 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe 156 (224)
+.+|+++||-.|......+.+...++|.+.|..|-...+. +.||.. ..+.++|+.+.++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~--g~gH~i--~~~~~~~~~~~l~ 213 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYP--GGGHEI--SPEELRDLREFLE 213 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEET--T-SSS----HHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcC--CCCCCC--CHHHHHHHHHHHh
Confidence 4579999998887666677788899999998877655552 124433 3445555555554
No 234
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.34 E-value=12 Score=35.10 Aligned_cols=103 Identities=10% Similarity=0.069 Sum_probs=60.4
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh--CCCCcEEEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK--DNSEGVVLLGH 172 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~--~~~~~VvLvGH 172 (224)
++|++++ |.+ ...+++.+..+.++++||.++.+-.+...-....+.......++...+..|.+. ....++++--.
T Consensus 40 ~Iv~~~g-Wag--~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~F 116 (350)
T KOG2521|consen 40 PIVVLLG-WAG--AIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFHVF 116 (350)
T ss_pred cEEEEee-ecc--ccchhHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEEEe
Confidence 5555554 444 334688888898999999999886644333333333222233333333333332 23567888899
Q ss_pred chhHHHHHHHH-HHhc----ccccccceEEEEc
Q 027344 173 STGCQDIVHYM-RANA----ACSRAVRAAIFQV 200 (224)
Q Consensus 173 SmGG~val~ya-~~~~----~~~~~V~gvIL~a 200 (224)
||||...+... .+.. ...+.+.++|..+
T Consensus 117 S~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS 149 (350)
T KOG2521|consen 117 SGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDS 149 (350)
T ss_pred cCCceeehHHHHHHHhhcCchhHhhcCCceEec
Confidence 99999888766 2211 1124566677754
No 235
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=76.25 E-value=3.2 Score=39.52 Aligned_cols=84 Identities=21% Similarity=0.146 Sum_probs=42.2
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhC--CcEEEEEcccCC--CCCCCCCCh-hhhHHHHHHHHHHHHhhCCCCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKE--RWSLVQFLMTSS--YTGYGTSSL-QQDAMEIDQLISYLINKDNSEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~--Gy~Vi~~Dlrss--~~G~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~V 167 (224)
.+-.||++||+.+ ....|+...++....+ ++.++...++.. -...|...+ .++.++ +++.+.+ ...++|
T Consensus 79 ~~HLvVlthGi~~--~~~~~~~~~~~~~~kk~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~---~~e~~~~-~si~kI 152 (405)
T KOG4372|consen 79 PKHLVVLTHGLHG--ADMEYWKEKIEQMTKKMPDKLIVVRGKMNNMCQTFDGVDVLGERLAEE---VKETLYD-YSIEKI 152 (405)
T ss_pred CceEEEecccccc--ccHHHHHHHHHhhhcCCCcceEeeeccccchhhccccceeeecccHHH---Hhhhhhc-ccccee
Confidence 3457888999976 2345555555544433 332332222100 011121111 123444 3333332 235789
Q ss_pred EEEEEchhHHHHHHH
Q 027344 168 VLLGHSTGCQDIVHY 182 (224)
Q Consensus 168 vLvGHSmGG~val~y 182 (224)
-.+|||.||.++...
T Consensus 153 SfvghSLGGLvar~A 167 (405)
T KOG4372|consen 153 SFVGHSLGGLVARYA 167 (405)
T ss_pred eeeeeecCCeeeeEE
Confidence 999999999976543
No 236
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=76.23 E-value=32 Score=30.65 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhh-CCCCcEEEEEEchhHHHHHHHHHH
Q 027344 148 AMEIDQLISYLINK-DNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 148 ~eDL~~lIe~L~~~-~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
.+.|....++|.+. .+.++|+|+|.|-|+..+..++..
T Consensus 74 ~~~I~~ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 74 EARIRDAYRFLSKNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred HHHHHHHHHHHHhccCCcceEEEEecCccHHHHHHHHHH
Confidence 34566666666443 357789999999999999998865
No 237
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=75.37 E-value=20 Score=39.22 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC----hhhhHHHHHH-HHHHHHhhCCCCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS----LQQDAMEIDQ-LISYLINKDNSEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss----l~~~~eDL~~-lIe~L~~~~~~~~V 167 (224)
..|++.|||-.-+ + ...++.++..|.- +-||.-. -.+.++++++ .|+.+++-.+..+.
T Consensus 2122 e~~~~Ffv~pIEG-~--tt~l~~la~rle~--------------PaYglQ~T~~vP~dSies~A~~yirqirkvQP~GPY 2184 (2376)
T KOG1202|consen 2122 EEPPLFFVHPIEG-F--TTALESLASRLEI--------------PAYGLQCTEAVPLDSIESLAAYYIRQIRKVQPEGPY 2184 (2376)
T ss_pred cCCceEEEecccc-c--hHHHHHHHhhcCC--------------cchhhhccccCCcchHHHHHHHHHHHHHhcCCCCCe
Confidence 4688999998753 2 2355667765541 2333321 1233555443 44555554567789
Q ss_pred EEEEEchhHHHHHHHHHHhcccccccceEEEEc
Q 027344 168 VLLGHSTGCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 168 vLvGHSmGG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
-|+|.|+||.++.+++..-.. ......+||+-
T Consensus 2185 rl~GYSyG~~l~f~ma~~Lqe-~~~~~~lillD 2216 (2376)
T KOG1202|consen 2185 RLAGYSYGACLAFEMASQLQE-QQSPAPLILLD 2216 (2376)
T ss_pred eeeccchhHHHHHHHHHHHHh-hcCCCcEEEec
Confidence 999999999999998876522 33444477764
No 238
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=75.05 E-value=13 Score=33.82 Aligned_cols=60 Identities=5% Similarity=0.061 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhh---CCCCcEEEEEEchhHHHHHHHHHHhcc-------cccccceEEEEccccChH
Q 027344 147 DAMEIDQLISYLINK---DNSEGVVLLGHSTGCQDIVHYMRANAA-------CSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~---~~~~~VvLvGHSmGG~val~ya~~~~~-------~~~~V~gvIL~aPv~D~e 206 (224)
.++|+..+++.+.++ +...+++|.|-|+||.-+=.++.+-.. .+-.++|+++-.|+.|++
T Consensus 30 ~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~~inLkGi~IGNg~t~~~ 99 (319)
T PLN02213 30 EVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMD 99 (319)
T ss_pred HHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccCCceeeeEEEeCCCCCCcc
Confidence 346666666655544 346789999999999866665554211 123788999988887764
No 239
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=74.68 E-value=16 Score=28.03 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=48.4
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh-hhhHH-HHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL-QQDAM-EIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA 187 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-~~~~e-DL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~ 187 (224)
+..+..+.++|...|+-.-.++++.- |.....+ ....+ -=...|+.+.+.++..++||||-|--.= .-.|..-..
T Consensus 10 wnly~~l~~Fl~~~~~P~G~~~Lr~~--~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~D-peiY~~ia~ 86 (100)
T PF09949_consen 10 WNLYPFLRDFLRRNGFPAGPLLLRDY--GPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHD-PEIYAEIAR 86 (100)
T ss_pred HHHHHHHHHHHHhcCCCCCceEcccC--CccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcC-HHHHHHHHH
Confidence 45566788888888888777777522 1111111 11111 1223455555677889999999985443 333333221
Q ss_pred ccccccceEE
Q 027344 188 ACSRAVRAAI 197 (224)
Q Consensus 188 ~~~~~V~gvI 197 (224)
..|++|.++-
T Consensus 87 ~~P~~i~ai~ 96 (100)
T PF09949_consen 87 RFPGRILAIY 96 (100)
T ss_pred HCCCCEEEEE
Confidence 2388888874
No 240
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.58 E-value=9.4 Score=37.77 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCCCcEEEEEEchhHHHHHHHHHHhc--ccccccceEEEEccc
Q 027344 162 DNSEGVVLLGHSTGCQDIVHYMRANA--ACSRAVRAAIFQVLT 202 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG~val~ya~~~~--~~~~~V~gvIL~aPv 202 (224)
.+.++|.|||.|.|+-++.+.+..-. ..-.-|..|||.+.+
T Consensus 444 qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaP 486 (633)
T KOG2385|consen 444 QGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAP 486 (633)
T ss_pred cCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCC
Confidence 57889999999999999997776431 124578899998744
No 241
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=74.31 E-value=1.6 Score=42.74 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=59.3
Q ss_pred ceEEEE--CCCCCCCCC-hhcHHHHHHHHHh-CCcEEEEEcccCCCCCC----CCCChhh--hHHHHHHHHHHHHhh---
Q 027344 95 QQVIFI--GGLTDGFFA-TEYLEPLAIALDK-ERWSLVQFLMTSSYTGY----GTSSLQQ--DAMEIDQLISYLINK--- 161 (224)
Q Consensus 95 ~~IVfV--HGlg~~~~~-~~y~~~La~~L~~-~Gy~Vi~~Dlrss~~G~----G~Ssl~~--~~eDL~~lIe~L~~~--- 161 (224)
.++|+| +||-.+... .-|. .+.|+. .+-.|+.++||-.--|| |....+. -.-|-+-++++++++
T Consensus 136 tVlVWiyGGGF~sGt~SLdvYd---Gk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~a 212 (601)
T KOG4389|consen 136 TVLVWIYGGGFYSGTPSLDVYD---GKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAA 212 (601)
T ss_pred eEEEEEEcCccccCCcceeeec---cceeeeeccEEEEEeeeeeccceEEecCCCCCCCCccchHHHHHHHHHHHHhHHH
Confidence 366666 555443322 1222 233433 34556677776321121 1111111 134555667777764
Q ss_pred C--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 162 D--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 162 ~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
+ +..+|.|+|-|.|+.-+...+... ....-++.+||++.-.+
T Consensus 213 FGGnp~~vTLFGESAGaASv~aHLlsP-~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 213 FGGNPSRVTLFGESAGAASVVAHLLSP-GSRGLFHRAILQSGSLN 256 (601)
T ss_pred hCCCcceEEEeccccchhhhhheecCC-CchhhHHHHHhhcCCCC
Confidence 2 456899999999998777666654 23457888899875544
No 242
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=71.88 E-value=9 Score=33.67 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
.++.|.||+=.+.......|.++..++|++.|+.+..+++
T Consensus 31 ~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l 70 (224)
T COG3340 31 KRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHL 70 (224)
T ss_pred CCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeec
Confidence 4679999987765444567899999999999999998876
No 243
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.26 E-value=23 Score=34.28 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=51.4
Q ss_pred HHHHHhCCcEEEEEcccCCCCCCCCCChh-hhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccce
Q 027344 117 AIALDKERWSLVQFLMTSSYTGYGTSSLQ-QDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRA 195 (224)
Q Consensus 117 a~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~-~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~g 195 (224)
.+++...+|.|+.+|-. |+..++ ...+++.++-+. .....++||=-+|=||.+..-+..+ +..-.|.|
T Consensus 175 l~~ak~~~~DvvIvDTA------GRl~ide~Lm~El~~Ik~~----~~P~E~llVvDam~GQdA~~~A~aF-~e~l~itG 243 (451)
T COG0541 175 LEKAKEEGYDVVIVDTA------GRLHIDEELMDELKEIKEV----INPDETLLVVDAMIGQDAVNTAKAF-NEALGITG 243 (451)
T ss_pred HHHHHHcCCCEEEEeCC------CcccccHHHHHHHHHHHhh----cCCCeEEEEEecccchHHHHHHHHH-hhhcCCce
Confidence 34566788999999953 444433 234455544443 3478899999999999999999987 33457889
Q ss_pred EEEE
Q 027344 196 AIFQ 199 (224)
Q Consensus 196 vIL~ 199 (224)
+|+.
T Consensus 244 vIlT 247 (451)
T COG0541 244 VILT 247 (451)
T ss_pred EEEE
Confidence 9986
No 244
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=70.70 E-value=9.5 Score=32.34 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=38.2
Q ss_pred CCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 102 GLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 102 Glg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
||+++.+- -..+++.+.+..-.++.+|+.. . .+.+...+-+..+++.++++++..+|+|+-|-
T Consensus 40 GfsG~~~l---e~~~a~~ia~~~a~~~~ld~~~---N---~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 40 GFSGNGKL---EPEVADLIAEIDADLIVLDCGP---N---MSPEEFRERLDGFVKTIREAHPDTPILLVSPI 102 (178)
T ss_dssp E-TCCCS-----HHHHHHHHHS--SEEEEEESH---H---CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE--
T ss_pred eecCcccc---CHHHHHHHhcCCCCEEEEEeec---C---CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 66654432 2335666666666888888721 1 34456678899999999999999999999753
No 245
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=69.34 E-value=43 Score=26.50 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=45.5
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
..-+...|.++.. ...+...+.+.+......++.+.+...-...+. +.++..++++++++.++++.+..+|++++-
T Consensus 23 ~~~v~n~g~~G~t-~~~~~~~~~~~~~~~~pd~v~i~~G~ND~~~~~-~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~ 98 (174)
T cd01841 23 GKTVNNLGIAGIS-SRQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEV-SSNQFIKWYRDIIEQIREEFPNTKIYLLSV 98 (174)
T ss_pred CCeEEeccccccc-HHHHHHHHHHHHHhcCCCEEEEEeccccCCCCC-CHHHHHHHHHHHHHHHHHHCCCCEEEEEee
Confidence 3445666776532 233444453444455666666655221112222 566778899999999988767778888874
No 246
>PRK11460 putative hydrolase; Provisional
Probab=69.12 E-value=22 Score=30.42 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=38.1
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN 160 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~ 160 (224)
.+.+|+++||-.+..........+.+.|++.|..+....+. ..||+.+ .++++++.++|.+
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~--~~gH~i~-----~~~~~~~~~~l~~ 207 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVE--DLGHAID-----PRLMQFALDRLRY 207 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEEC--CCCCCCC-----HHHHHHHHHHHHH
Confidence 35688999998887655666778889998888665443331 2355543 3444444444443
No 247
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=67.73 E-value=14 Score=30.96 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=39.4
Q ss_pred HHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhH
Q 027344 120 LDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGC 176 (224)
Q Consensus 120 L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG 176 (224)
|.++|++.+.+|.=-+-.-+.. ....+++.+.++.+++.++.++|+++-.|.|.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~---~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs 89 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE---DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGS 89 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc---CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 6789999999997322222222 23456788888888887776789999999973
No 248
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=67.00 E-value=55 Score=30.91 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=68.1
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh---CCCCcEEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK---DNSEGVVLL 170 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~---~~~~~VvLv 170 (224)
+|-+|+|-.-+-...-..-++.+++.+.+.+..|+.++. +||..+.......-++++++++..+ .....|-|+
T Consensus 86 ~p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t----~gf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNii 161 (427)
T cd01971 86 DADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLET----GGFKGNNYAGHEIVLKAIIDQYVGQSEEKEPGLVNLW 161 (427)
T ss_pred CCCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEEC----CCcCcccccHHHHHHHHHHHHhccCCCCCCCCeEEEE
Confidence 354555433221112234556677777667889998886 3665544444445567777766532 234569999
Q ss_pred EEc--hhH------HHHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhcccc
Q 027344 171 GHS--TGC------QDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLLS 221 (224)
Q Consensus 171 GHS--mGG------~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~~ 221 (224)
|.. +.. ..+.+++.+. .++-.++..+-...+..+.+..+.-|+.+.
T Consensus 162 G~~~~~~~~~~~d~~elk~lL~~~-----Gl~v~~~~~~~~~~~ei~~~~~A~~niv~~ 215 (427)
T cd01971 162 GPVPYQDPFWRGDLEEIKRVLEGI-----GLKVNILFGPESNGEELRSIPKAQFNLVLS 215 (427)
T ss_pred eccCCccccccccHHHHHHHHHHC-----CCeEEEEECCCCCHHHHHhcccCcEEEEEc
Confidence 964 221 2233344332 555555555556677777777777776654
No 249
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=65.35 E-value=39 Score=30.74 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred EEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 97 VIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
|+|||.-- ...++.|+++|.++|+.|..+-.
T Consensus 2 il~~~~~~-----p~~~~~la~~L~~~G~~v~~~~~ 32 (396)
T cd03818 2 ILFVHQNF-----PGQFRHLAPALAAQGHEVVFLTE 32 (396)
T ss_pred EEEECCCC-----chhHHHHHHHHHHCCCEEEEEec
Confidence 78898832 23457799999999999988754
No 250
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=63.80 E-value=48 Score=30.05 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=30.0
Q ss_pred hcHHHHHHHHHhCCcE--EEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchh
Q 027344 111 EYLEPLAIALDKERWS--LVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTG 175 (224)
Q Consensus 111 ~y~~~La~~L~~~Gy~--Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmG 175 (224)
.|+....+.+.+.|.. =+.+|- +-|||++ ..+..+ +-.-++.+++ ...-+|+|+|==
T Consensus 163 ~~l~~~i~~a~~~GI~~~~IilDP---GiGF~k~-~~~n~~-ll~~l~~l~~---lg~Pilvg~SRK 221 (282)
T PRK11613 163 RYFIEQIARCEAAGIAKEKLLLDP---GFGFGKN-LSHNYQ-LLARLAEFHH---FNLPLLVGMSRK 221 (282)
T ss_pred HHHHHHHHHHHHcCCChhhEEEeC---CCCcCCC-HHHHHH-HHHHHHHHHh---CCCCEEEEeccc
Confidence 3555566677788984 455672 2344442 222222 2223334432 345789999933
No 251
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=63.72 E-value=25 Score=31.78 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=53.4
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCC-CCC---CChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHH----HHHHHHh
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTG-YGT---SSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDI----VHYMRAN 186 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G-~G~---Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~va----l~ya~~~ 186 (224)
.-++.+.+.|-.++..++...-.| .|. .++++.++.+.++.+..++. ...++++.| ||-++ .+|+.++
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v--~~dii~l~h--GGPI~~p~D~~~~l~~ 236 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAV--NPDIIVLCH--GGPIATPEDAQYVLRN 236 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC---TT-EEEEE--CTTB-SHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHh--CCCeEEEEe--CCCCCCHHHHHHHHhc
Confidence 345667778999998887432211 111 23455555555666655542 346899999 88664 4555554
Q ss_pred cccccccceEEEEccccChHHHHHHHHhhhhc
Q 027344 187 AACSRAVRAAIFQVLTIDFEIFVVLLIASHNL 218 (224)
Q Consensus 187 ~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~ 218 (224)
.+.+.|.+--+.+........+.++.+.|
T Consensus 237 ---t~~~~Gf~G~Ss~ERlP~E~ai~~~~~~F 265 (268)
T PF09370_consen 237 ---TKGIHGFIGASSMERLPVERAITETVRAF 265 (268)
T ss_dssp ----TTEEEEEESTTTTHHHHHHHHHHHHHHH
T ss_pred ---CCCCCEEecccchhhccHHHHHHHHHHHh
Confidence 45689999888776555555555555544
No 252
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=63.60 E-value=9.3 Score=32.87 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=24.8
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
..||++|.... .....+..+.+.|.++||+++.++
T Consensus 187 g~IiLlHd~~~--~t~~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 187 GAILLLHAVSK--DNAEALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CcEEEEECCCC--CHHHHHHHHHHHHHHCCCEEEEhH
Confidence 45777786432 235678888888988999988763
No 253
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=63.33 E-value=94 Score=27.48 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=56.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
..|+++-|.|.. ...+...++.+++.|+..+-+++.+.....+...+.++.+.+.++++.+++..+ .+ +.+--
T Consensus 89 ~~p~ivsi~g~~-----~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~-~P-v~vKl 161 (296)
T cd04740 89 GTPVIASIAGST-----VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATD-VP-VIVKL 161 (296)
T ss_pred CCcEEEEEecCC-----HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccC-CC-EEEEe
Confidence 356777777732 344566888888889999988886654322222344556778888888886542 23 33433
Q ss_pred chhHHHHHHHHHHhcccccccceEEEE
Q 027344 173 STGCQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 173 SmGG~val~ya~~~~~~~~~V~gvIL~ 199 (224)
+..--...+++..- ....++++++.
T Consensus 162 ~~~~~~~~~~a~~~--~~~G~d~i~~~ 186 (296)
T cd04740 162 TPNVTDIVEIARAA--EEAGADGLTLI 186 (296)
T ss_pred CCCchhHHHHHHHH--HHcCCCEEEEE
Confidence 43322233333321 12356777664
No 254
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.45 E-value=45 Score=26.54 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=35.8
Q ss_pred HHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 119 ALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 119 ~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
.+.+....++.+.+...-...+..+.++..++++++++.+++..+..+|++++-
T Consensus 51 ~l~~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~ 104 (189)
T cd01825 51 QLAALPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGP 104 (189)
T ss_pred HHhhCCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 344456667766653211122223467788999999999998767788999874
No 255
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=60.03 E-value=1.1e+02 Score=27.13 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=56.6
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCC-cEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKER-WSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~G-y~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
.|+++=|.|.. ..-+...++.+++.| +..+-+++.+.+..+|...+.++.+-+.++++.+++..+ .+|+ +=-
T Consensus 92 ~p~i~si~g~~-----~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~-~pv~-vKl 164 (301)
T PRK07259 92 TPIIANVAGST-----EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVK-VPVI-VKL 164 (301)
T ss_pred CcEEEEeccCC-----HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC-CCEE-EEc
Confidence 56777777742 244566888888888 888888876555444333444556778888888876542 2333 322
Q ss_pred chhHHHHHHHHHHhcccccccceEEEE
Q 027344 173 STGCQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 173 SmGG~val~ya~~~~~~~~~V~gvIL~ 199 (224)
+..--...+++..- ....++++++.
T Consensus 165 ~~~~~~~~~~a~~l--~~~G~d~i~~~ 189 (301)
T PRK07259 165 TPNVTDIVEIAKAA--EEAGADGLSLI 189 (301)
T ss_pred CCCchhHHHHHHHH--HHcCCCEEEEE
Confidence 32222333444332 13357777764
No 256
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=59.97 E-value=63 Score=28.60 Aligned_cols=110 Identities=18% Similarity=0.053 Sum_probs=61.4
Q ss_pred CCceEEEECCCCCCCC-ChhcHHHHHHHHHhCCcEEEEEcccCCC---------CC-------------CCCCCh-----
Q 027344 93 YQQQVIFIGGLTDGFF-ATEYLEPLAIALDKERWSLVQFLMTSSY---------TG-------------YGTSSL----- 144 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~-~~~y~~~La~~L~~~Gy~Vi~~Dlrss~---------~G-------------~G~Ssl----- 144 (224)
.++-|+++|||-.+-. ...=...+.+.|.+. +.++.+|-+..- +. +|....
T Consensus 4 ~k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~ 82 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASF 82 (230)
T ss_pred CCceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccccc
Confidence 4678999999975431 111123455566544 666666643110 00 111111
Q ss_pred ---hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc-----ccccccceEEEEccccCh
Q 027344 145 ---QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA-----ACSRAVRAAIFQVLTIDF 205 (224)
Q Consensus 145 ---~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~-----~~~~~V~gvIL~aPv~D~ 205 (224)
...-+-++.+.+|++++-+-+ =|+|.|-|+.++...+.... .....++=+|+++...-.
T Consensus 83 ~~~~~~eesl~yl~~~i~enGPFD--GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~ 149 (230)
T KOG2551|consen 83 TEYFGFEESLEYLEDYIKENGPFD--GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP 149 (230)
T ss_pred ccccChHHHHHHHHHHHHHhCCCc--cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC
Confidence 112233677777777653322 47999999999888777211 123356778888876554
No 257
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=59.78 E-value=83 Score=24.68 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 113 LEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 113 ~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
+..+.+.+......++.+.+.. .........++..++++++++.++++ ..+|+|++
T Consensus 53 ~~~l~~~~~~~~pd~v~i~~G~-ND~~~~~~~~~~~~~l~~li~~~~~~--~~~vil~~ 108 (177)
T cd01822 53 LARLPALLAQHKPDLVILELGG-NDGLRGIPPDQTRANLRQMIETAQAR--GAPVLLVG 108 (177)
T ss_pred HHHHHHHHHhcCCCEEEEeccC-cccccCCCHHHHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 3445455554466666665521 12112224556677788888888764 45677775
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.50 E-value=70 Score=27.00 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHHHHhCCcEEEEEcccCCCCCCCCCCh-hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccc
Q 027344 116 LAIALDKERWSLVQFLMTSSYTGYGTSSL-QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVR 194 (224)
Q Consensus 116 La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~ 194 (224)
..+.+.++++.++.+|-. |++.. .+..+++.++++.+ ...+++|+=-++.++..+.-+.++ ...-.++
T Consensus 75 ~l~~~~~~~~D~vlIDT~------Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~~~~~~~~~~~~-~~~~~~~ 143 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTA------GRSPRDEELLEELKKLLEAL----NPDEVHLVLSATMGQEDLEQALAF-YEAFGID 143 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-------SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGGGGGHHHHHHHHH-HHHSSTC
T ss_pred HHHHHhhcCCCEEEEecC------CcchhhHHHHHHHHHHhhhc----CCccceEEEecccChHHHHHHHHH-hhcccCc
Confidence 344556678999999963 44433 34466677666655 245677777777777777655554 1234689
Q ss_pred eEEEE
Q 027344 195 AAIFQ 199 (224)
Q Consensus 195 gvIL~ 199 (224)
++|+.
T Consensus 144 ~lIlT 148 (196)
T PF00448_consen 144 GLILT 148 (196)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99985
No 259
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=58.74 E-value=1.3e+02 Score=28.07 Aligned_cols=99 Identities=8% Similarity=0.031 Sum_probs=57.9
Q ss_pred ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcc
Q 027344 109 ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAA 188 (224)
Q Consensus 109 ~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~ 188 (224)
...-+..+++.|.+.|...+..|-. ..-+-...+++-++-+.++++...++.+.+++++.+-+....-+++.++.-
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdde~--~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a-- 219 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDDEL--LADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRA-- 219 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeecccc--ccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHH--
Confidence 3455677889998899999887731 111122344555666777777777666666666666665555555555542
Q ss_pred cccccceEEEEccccChHHHHHH
Q 027344 189 CSRAVRAAIFQVLTIDFEIFVVL 211 (224)
Q Consensus 189 ~~~~V~gvIL~aPv~D~e~~~~~ 211 (224)
...-.+++.+.-|..-......+
T Consensus 220 ~~~Gad~vmv~~~~~g~~~~~~l 242 (367)
T cd08205 220 VEAGANALLINPNLVGLDALRAL 242 (367)
T ss_pred HHcCCCEEEEecccccccHHHHH
Confidence 23455565555554433333333
No 260
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.73 E-value=79 Score=28.31 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=40.9
Q ss_pred CCcEEEEEcccCCCCCCCCCCh-hhhHHHHHHHHHHHHhhCCCCcEEEEE-EchhHHHHHHHHHHhcccccccceEEEE
Q 027344 123 ERWSLVQFLMTSSYTGYGTSSL-QQDAMEIDQLISYLINKDNSEGVVLLG-HSTGCQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 123 ~Gy~Vi~~Dlrss~~G~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~VvLvG-HSmGG~val~ya~~~~~~~~~V~gvIL~ 199 (224)
.++.++.+|.. |+... .+.++++.++++.. . ...++|+- =++++..+...+.++ ..-.++++|+.
T Consensus 153 ~~~D~ViIDt~------Gr~~~~~~~l~el~~~~~~~---~-~~~~~LVl~a~~~~~d~~~~~~~f--~~~~~~~~I~T 219 (270)
T PRK06731 153 ARVDYILIDTA------GKNYRASETVEEMIETMGQV---E-PDYICLTLSASMKSKDMIEIITNF--KDIHIDGIVFT 219 (270)
T ss_pred CCCCEEEEECC------CCCcCCHHHHHHHHHHHhhh---C-CCeEEEEEcCccCHHHHHHHHHHh--CCCCCCEEEEE
Confidence 36888888863 33221 23344454444422 2 23455544 578999999999987 35789999985
No 261
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=58.50 E-value=31 Score=28.58 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceE-EEEccccC
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAA-IFQVLTID 204 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gv-IL~aPv~D 204 (224)
-|+.++++.|+++ +.++|.+.| |+.++-.+++.. -|+-+ +.++|+..
T Consensus 121 ~dl~~~l~~L~~~-g~~~i~v~G---G~~l~~~~l~~g-----LvDEl~l~i~Pv~l 168 (200)
T PF01872_consen 121 VDLEEALRRLKER-GGKDILVEG---GGSLNGSFLRAG-----LVDELSLTIAPVLL 168 (200)
T ss_dssp EHHHHHHHHHHHT-TTSEEEEEE---HHHHHHHHHHTT-------SEEEEEEESEE-
T ss_pred cCHHHHHHHHHhc-CCCEEEEec---hHHHHHHHHhCC-----CCCEEEEEEeeEEe
Confidence 3688888999876 788999988 888888888764 67766 44677643
No 262
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=58.32 E-value=1e+02 Score=27.07 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=57.4
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
.|+++-|.|.. ...+...++.+.+.|+..+-+++.+.....+. .+.++.+.+.++++.+++.. +..+.+.-+
T Consensus 99 ~pvi~si~g~~-----~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~-~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~ 170 (289)
T cd02810 99 QPLIASVGGSS-----KEDYVELARKIERAGAKALELNLSCPNVGGGR-QLGQDPEAVANLLKAVKAAV--DIPLLVKLS 170 (289)
T ss_pred CeEEEEeccCC-----HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-ccccCHHHHHHHHHHHHHcc--CCCEEEEeC
Confidence 45666677742 23345578888888999999998655543333 34556778888888888654 334556555
Q ss_pred hhHH--HHHHHHHHhcccccccceEEEEc
Q 027344 174 TGCQ--DIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 174 mGG~--val~ya~~~~~~~~~V~gvIL~a 200 (224)
.+-- ...+.+..- ....++++++.+
T Consensus 171 ~~~~~~~~~~~a~~l--~~~Gad~i~~~~ 197 (289)
T cd02810 171 PYFDLEDIVELAKAA--ERAGADGLTAIN 197 (289)
T ss_pred CCCCHHHHHHHHHHH--HHcCCCEEEEEc
Confidence 4321 123333321 123577777754
No 263
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=57.82 E-value=54 Score=30.97 Aligned_cols=73 Identities=15% Similarity=0.341 Sum_probs=53.9
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCC----CCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSS----YTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLL 170 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss----~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLv 170 (224)
..++++-|-.+ +++..++..|+..|-+|+.+++... ++..|...+.+..+|..+.++.+..+...+.+|++
T Consensus 14 ~NflllQGPvg-----~ff~~la~~le~~~~~v~k~NfN~GD~~fyp~~~t~~~~~~~D~~~~~~r~f~~~hsi~aivlf 88 (403)
T COG3562 14 ENFLLLQGPVG-----PFFQELASWLELNGKRVFKINFNAGDSTFYPQAGTVVYNDNLDDFPTFLRKFIAQHSIDAIVLF 88 (403)
T ss_pred cceEeeeCCcc-----hHHHHHHHHHHhcCceEEEEeecCCCceeeecCCccccccchhHHHHHHHHHHHhccCCceEEe
Confidence 57888888543 5778899999999999999998431 12223334556678888888888777778889999
Q ss_pred EE
Q 027344 171 GH 172 (224)
Q Consensus 171 GH 172 (224)
|-
T Consensus 89 gd 90 (403)
T COG3562 89 GD 90 (403)
T ss_pred cc
Confidence 85
No 264
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=57.78 E-value=1e+02 Score=29.00 Aligned_cols=119 Identities=14% Similarity=0.179 Sum_probs=66.3
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHH-hCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh----------C
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALD-KERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK----------D 162 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~----------~ 162 (224)
+|-+|+|..-+-...-..-++.+++.+. +.|..|+.++. +||..+.......-+.++++.+... .
T Consensus 85 ~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v~t----~gf~g~~~~g~~~al~~l~~~~~~~~~~~~~~~~~~ 160 (430)
T cd01981 85 KPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPLDV----NHYRVNELQAADETFEQLVRFYAEKARPQGTPREKT 160 (430)
T ss_pred CCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEecC----CCccchHHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4556666554322122344566776664 34788888876 4675544444444466667665321 1
Q ss_pred CCCcEEEEEEchhH-------HHHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhcccc
Q 027344 163 NSEGVVLLGHSTGC-------QDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLLS 221 (224)
Q Consensus 163 ~~~~VvLvGHSmGG-------~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~~ 221 (224)
....|.|+|....+ .-+..++.+. .++-......-...+....+..+.-|+.+.
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~-----Gl~v~~~~~~~~~~~~i~~~~~A~lniv~~ 221 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTL-----GIEVNVVIPEGASVDDLNELPKAWFNIVPY 221 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHc-----CCeEEEEEcCCCCHHHHHhhhhCeEEEEec
Confidence 23469999987432 1223333332 344444444445677777778887777653
No 265
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=57.52 E-value=68 Score=25.37 Aligned_cols=75 Identities=8% Similarity=0.038 Sum_probs=41.9
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
.=++-.|+++.. .......+.+.+......++.+-+...--..+. +.++..+.++++++.++++.+..+|++++-
T Consensus 23 ~~v~N~Gi~G~~-~~~~~~~~~~~~~~~~p~~vvi~~G~ND~~~~~-~~~~~~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 23 LPVVNRGFGGST-LADCLHYFDRLVLPYQPRRVVLYAGDNDLASGR-TPEEVLRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred CceeecCcccch-HHHHHHHHHhhhccCCCCEEEEEEecCcccCCC-CHHHHHHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 335667776532 223333333333333445555533111012222 356778889999999988776678999884
No 266
>PTZ00445 p36-lilke protein; Provisional
Probab=56.86 E-value=44 Score=29.38 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=57.3
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCC-----CCCCCCCC--h----hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHH-
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSS-----YTGYGTSS--L----QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQ- 177 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss-----~~G~G~Ss--l----~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~- 177 (224)
....+.+++.|.+.|+++++.|+=.. -+||.... . .....|+..+++.+.+. .-+|++|-+|==-.
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~--~I~v~VVTfSd~~~~ 105 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNS--NIKISVVTFSDKELI 105 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHC--CCeEEEEEccchhhc
Confidence 34556788899999999999998321 12444332 0 11246677788877652 46799999985422
Q ss_pred ------------HHHHHHHHhcccccccceEEEEccc
Q 027344 178 ------------DIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 178 ------------val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
-.+.++.++..+.-.|+.+..--|.
T Consensus 106 ~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~ 142 (219)
T PTZ00445 106 PSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPK 142 (219)
T ss_pred cccCCcceechHHHHHHHHHhcCccceeeeeeeeCCc
Confidence 2333444443556788888766564
No 267
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=56.61 E-value=87 Score=28.53 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=55.1
Q ss_pred ECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc--cCCCCCCCCC-ChhhhHHHHHHHHHHHHh--hCCCCcEEEEEE--
Q 027344 100 IGGLTDGFFATEYLEPLAIALDKERWSLVQFLM--TSSYTGYGTS-SLQQDAMEIDQLISYLIN--KDNSEGVVLLGH-- 172 (224)
Q Consensus 100 VHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl--rss~~G~G~S-sl~~~~eDL~~lIe~L~~--~~~~~~VvLvGH-- 172 (224)
+||..++.... -.|+..||.|+.+.- =+.++|||.. ......++++++++.+.+ ....-+.+|-|.
T Consensus 11 v~G~vGn~AA~-------f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlg 83 (281)
T COG2240 11 VYGSVGNSAAI-------FPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLG 83 (281)
T ss_pred eecccccHhHH-------HHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEccCC
Confidence 47766543221 123457999987643 2567888874 333446777777777765 344556888886
Q ss_pred chhH-HHHHHHHHHhcccccccceEEEEccc
Q 027344 173 STGC-QDIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 173 SmGG-~val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
|-+- ..+..++.+. +.++-+.++++-||
T Consensus 84 s~~qv~~i~~~v~~v--k~~~P~~~~l~DPV 112 (281)
T COG2240 84 SAEQVRAIAGIVKAV--KEANPNALYLCDPV 112 (281)
T ss_pred CHHHHHHHHHHHHHH--hccCCCeEEEeCCc
Confidence 2222 2233344443 23455677888887
No 268
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=56.36 E-value=1.1e+02 Score=28.87 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=66.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHh-CCcEEEEEcccCCCCCCCC-CChhhhHHHHHHHHHHHHhh----CCCCcE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDK-ERWSLVQFLMTSSYTGYGT-SSLQQDAMEIDQLISYLINK----DNSEGV 167 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~-~Gy~Vi~~Dlrss~~G~G~-Ssl~~~~eDL~~lIe~L~~~----~~~~~V 167 (224)
+|-+|+|..-+-...-..-++.+++.+.+ .|..|+.++. +||-. +.......-++++++.+... .....|
T Consensus 89 ~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t----~gf~g~~~~~G~~~a~~al~~~~~~~~~~~~~~~~V 164 (426)
T cd01972 89 KPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHC----EGFKGKHWRSGFDAAFHGILRHLVPPQDPTKQEDSV 164 (426)
T ss_pred CCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeC----CccCCccHhHHHHHHHHHHHHHhcCCCCCCCCCCCE
Confidence 46666665533211223345667777753 4788888876 36544 33344455577777777532 123469
Q ss_pred EEEEEchh--------HHHHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhcccc
Q 027344 168 VLLGHSTG--------CQDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLLS 221 (224)
Q Consensus 168 vLvGHSmG--------G~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~~ 221 (224)
-|+|.... -..+..++.+. .++-..+...-.+.+....+..+.-|+.+.
T Consensus 165 NliG~~~~~~~~~~~d~~ei~~lL~~~-----Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~ 221 (426)
T cd01972 165 NIIGLWGGPERTEQEDVDEFKRLLNEL-----GLRVNAIIAGGCSVEELERASEAAANVTLC 221 (426)
T ss_pred EEEccCCCccccccccHHHHHHHHHHc-----CCeEEEEeCCCCCHHHHHhcccCCEEEEEC
Confidence 99998865 12344444443 344444444446666666777777666653
No 269
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=56.05 E-value=58 Score=28.98 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=34.7
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCc-EEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERW-SLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLL 170 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy-~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLv 170 (224)
+|+..||-.. +...++..|-..|.+.|| .|+.... .||. +++.++++|++ .+.++|.|+
T Consensus 140 ~vlmgHGt~h--~s~~~YacLd~~~~~~~f~~v~v~~v----e~yP---------~~d~vi~~l~~-~~~~~v~L~ 199 (265)
T COG4822 140 LVLMGHGTDH--HSNAAYACLDHVLDEYGFDNVFVAAV----EGYP---------LVDTVIEYLRK-NGIKEVHLI 199 (265)
T ss_pred EEEEecCCCc--cHHHHHHHHHHHHHhcCCCceEEEEe----cCCC---------cHHHHHHHHHH-cCCceEEEe
Confidence 4444599643 345566667777888888 4443322 2332 37788888885 344555443
No 270
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=54.98 E-value=1e+02 Score=29.92 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=63.5
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh-------CCCCc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK-------DNSEG 166 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~-------~~~~~ 166 (224)
+|-+|+|-+-+-...-..-+..+++.+..+|..|+.++. +||..........-+.++++.+... .....
T Consensus 85 ~P~~I~V~sTC~selIGdDi~~~~~~~~~~~~pvi~v~t----~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~ 160 (511)
T TIGR01278 85 KPDLIVVTPSCTSSLLQEDLGNLAAAAGLDKSKVIVADV----NAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPS 160 (511)
T ss_pred CCCEEEEeCCChHHHhccCHHHHHHHhccCCCcEEEecC----CCcccchhHHHHHHHHHHHHHHHhccccccccCCCCc
Confidence 455555544331112233456677777666788998886 3665543333344466677655421 12345
Q ss_pred EEEEEEchhH-------HHHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhccc
Q 027344 167 VVLLGHSTGC-------QDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLL 220 (224)
Q Consensus 167 VvLvGHSmGG-------~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~ 220 (224)
|.|+|.+..| .-+..++... .|+-.++...-...+....++.+.-|+.+
T Consensus 161 VNIiG~~~l~~~~~~D~~elkrlL~~l-----Gi~vn~v~p~g~s~~dl~~l~~A~~NIv~ 216 (511)
T TIGR01278 161 VNLLGPASLGFHHRHDLIELRRLLKTL-----GIEVNVVAPWGASIADLARLPAAWLNICP 216 (511)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHC-----CCeEEEEeCCCCCHHHHHhcccCcEEEEe
Confidence 9999987533 1122222222 34433333333556767777777777764
No 271
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=54.77 E-value=13 Score=30.78 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=20.6
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
.||++|--.........+..+.+.|.++||+++.+
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 46667731111122455667777787888887765
No 272
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=54.17 E-value=86 Score=26.51 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=29.9
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCCCCCC-Chh---hhHHHHHHHHHHHHhhCC
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTGYGTS-SLQ---QDAMEIDQLISYLINKDN 163 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-sl~---~~~eDL~~lIe~L~~~~~ 163 (224)
.+++.|.++|++|+..+.+......... .+. .+.++++++++.+.++++
T Consensus 24 ~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 24 AIVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred HHHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4788888899999998864221111111 011 235678888888776654
No 273
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=54.07 E-value=52 Score=28.87 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=50.7
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC-----------CCCCCC-ChhhhH--HHHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY-----------TGYGTS-SLQQDA--MEIDQLISYLI 159 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-----------~G~G~S-sl~~~~--eDL~~lIe~L~ 159 (224)
++.|+||+=.........|.+.+.++|.+.|+.|..++..... .+-|.+ .+-+.. ..+.++++...
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~ 110 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAV 110 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHH
Confidence 5778999776533233567777888899999998887753210 011111 011111 12333333322
Q ss_pred hhCCCCcEEEEEEchhHHHHHHHHH
Q 027344 160 NKDNSEGVVLLGHSTGCQDIVHYMR 184 (224)
Q Consensus 160 ~~~~~~~VvLvGHSmGG~val~ya~ 184 (224)
+ +..+++|-|.|+.+....+.
T Consensus 111 ~----~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 111 K----NGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred H----CCCEEEEECHHHHhhhccce
Confidence 1 24889999999998766554
No 274
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=53.06 E-value=1e+02 Score=30.05 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=63.4
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh--------hCCCC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN--------KDNSE 165 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~--------~~~~~ 165 (224)
+|-+|+|-.-+-...-..-++.+++.+. .+..|+.++.+ ||.........+-+.++++.+.+ .....
T Consensus 85 ~P~~I~V~sTC~seiIGdDi~~v~~~~~-~~~~Vi~v~t~----gf~~~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~ 159 (519)
T PRK02910 85 QPDLIVVGPSCTAELLQEDLGGLAKHAG-LPIPVLPLELN----AYRVKENWAADETFYQLVRALAKKAAELPQPKTARP 159 (519)
T ss_pred CCCEEEEeCCcHHHHhccCHHHHHHHhC-CCCCEEEEecC----CcccccchHHHHHHHHHHHHHhhhcccccccCCCCC
Confidence 4545555443221122334556776664 57889988863 66544444444556777776543 11234
Q ss_pred cEEEEEEchhHH-------HHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhccc
Q 027344 166 GVVLLGHSTGCQ-------DIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLL 220 (224)
Q Consensus 166 ~VvLvGHSmGG~-------val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~ 220 (224)
.|.|+|.+..|. .+.+++... .|+-.++...-...+....++.+.-|+.+
T Consensus 160 ~VNIiG~~~l~f~~~~D~~EikrlL~~~-----Gi~vn~v~p~g~s~~di~~l~~A~~nivl 216 (519)
T PRK02910 160 SVNLLGPTALGFHHRDDLTELRRLLATL-----GIDVNVVAPLGASPADLKRLPAAWFNVVL 216 (519)
T ss_pred eEEEEecCccCCCChhHHHHHHHHHHHc-----CCeEEEEeCCCCCHHHHHhcccCcEEEEe
Confidence 699999876542 222233322 34443333333556666677777777664
No 275
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=52.43 E-value=49 Score=26.25 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHhCCcEEEEE
Q 027344 115 PLAIALDKERWSLVQF 130 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~ 130 (224)
.-.+.|.+.||.|+.+
T Consensus 98 ~~~~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 98 RVNSRLQELGWRVLRV 113 (117)
T ss_pred HHHHHHHHCcCEEEEE
Confidence 3456788899999876
No 276
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=52.32 E-value=83 Score=25.00 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=41.6
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhC---CcEEEEEcccCCCCCCCC----CChhhhHHHHHHHHHHHHhhCCCCcEEEE
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKE---RWSLVQFLMTSSYTGYGT----SSLQQDAMEIDQLISYLINKDNSEGVVLL 170 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~---Gy~Vi~~Dlrss~~G~G~----Ssl~~~~eDL~~lIe~L~~~~~~~~VvLv 170 (224)
+...|.++.. .......+.+.+.+. ...++.+.+...-...+. .+.+...+.++.+++.++++.+..+|+++
T Consensus 35 v~N~g~~G~t-~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 35 VINRGFSGYN-TRWALKVLPKIFLEEKLAQPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred eeccCCCccc-HHHHHHHHHHhcCccccCCceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 4456766422 122333343334333 466666654221111111 24566788899999999876667789998
Q ss_pred EEc
Q 027344 171 GHS 173 (224)
Q Consensus 171 GHS 173 (224)
+-.
T Consensus 114 t~~ 116 (199)
T cd01838 114 TPP 116 (199)
T ss_pred CCC
Confidence 753
No 277
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=51.94 E-value=35 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHH-------HHHHHHHHhcccccccceEEEEccc
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQ-------DIVHYMRANAACSRAVRAAIFQVLT 202 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~-------val~ya~~~~~~~~~V~gvIL~aPv 202 (224)
.+++.+.|+...++.+.-..+++-||+||. ++++.++.. .++.+...+.+-|.
T Consensus 107 ~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~--y~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 107 LEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREE--YPKKPIISFSILPF 166 (216)
T ss_dssp HHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHT--STTSEEEEEEEE-C
T ss_pred ccccccccchhhccccccccceecccccceeccccccccchhhhcc--ccccceeecccccc
Confidence 344444444444444667799999999887 444444442 23455555556676
No 278
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=51.26 E-value=77 Score=28.95 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=39.4
Q ss_pred hCCcEEEEEcccCCCCC-CCCCCh-hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHH
Q 027344 122 KERWSLVQFLMTSSYTG-YGTSSL-QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVH 181 (224)
Q Consensus 122 ~~Gy~Vi~~Dlrss~~G-~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ 181 (224)
++|-+|+++=+|-...+ +|..-. --+.+|.+.+.+.++.....+++.|+=|+-||.+-..
T Consensus 46 kr~srvI~~Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA 107 (285)
T PF01972_consen 46 KRGSRVITLIHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAA 107 (285)
T ss_pred HhCCEEEEEEEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHH
Confidence 57899998876532111 233211 1246788888888876545567999999999987544
No 279
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=50.79 E-value=43 Score=26.08 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=13.4
Q ss_pred CceEEEee---CC-CCceEEEECCCCCCC
Q 027344 83 PVQVAFKT---GD-YQQQVIFIGGLTDGF 107 (224)
Q Consensus 83 ~~~v~y~~---g~-~~~~IVfVHGlg~~~ 107 (224)
+..|||.- .+ ...+|||+||+.+++
T Consensus 77 g~~iHFih~rs~~~~aiPLll~HGWPgSf 105 (112)
T PF06441_consen 77 GLDIHFIHVRSKRPNAIPLLLLHGWPGSF 105 (112)
T ss_dssp TEEEEEEEE--S-TT-EEEEEE--SS--G
T ss_pred eEEEEEEEeeCCCCCCeEEEEECCCCccH
Confidence 55677774 12 335899999999865
No 280
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.86 E-value=76 Score=25.49 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=40.3
Q ss_pred EECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 99 FIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 99 fVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
...|..+. ....++..+.+ +.+....++.+-+...-...+ .+.+...+++.++++.++++.+..+|++++-
T Consensus 44 ~n~g~~G~-t~~~~~~~l~~-~~~~~pd~Vii~~G~ND~~~~-~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 44 RLFAKTGA-TSADLLRQLAP-LPETRFDVAVISIGVNDVTHL-TSIARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred EEEecCCc-CHHHHHHHHHh-cccCCCCEEEEEecccCcCCC-CCHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 33455442 22333443333 334566666664421111222 2456778999999999998767778888763
No 281
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=49.84 E-value=1.5e+02 Score=27.29 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=61.4
Q ss_pred cHHHHHHHHHhC-CcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh---hCCCCcEEEEEEc-hhHHHHHHHHHHh
Q 027344 112 YLEPLAIALDKE-RWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN---KDNSEGVVLLGHS-TGCQDIVHYMRAN 186 (224)
Q Consensus 112 y~~~La~~L~~~-Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~---~~~~~~VvLvGHS-mGG~val~ya~~~ 186 (224)
-++.+++.+.++ |..|+.++. +||..+.......-+.++++++.+ +...+.|-|+|.+ ++-....++-+--
T Consensus 92 D~~~v~~~~~~~~~~~vi~v~~----~gf~~~~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL 167 (398)
T PF00148_consen 92 DIEAVARELQEEYGIPVIPVHT----PGFSGSYSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLL 167 (398)
T ss_dssp THHHHHHHHHHHHSSEEEEEE------TTSSSHHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHH
T ss_pred CHHHHHHHhhcccCCcEEEEEC----CCccCCccchHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHH
Confidence 345677777643 678998886 477444445555667788888832 2344579999998 5522222222111
Q ss_pred cccccccceEEEEccccChHHHHHHHHhhhhcccc
Q 027344 187 AACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLLS 221 (224)
Q Consensus 187 ~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~~ 221 (224)
..-.++-.....+-.+.+..+.+.++.=|+.++
T Consensus 168 --~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~ 200 (398)
T PF00148_consen 168 --EELGIEVNAVFPGGTTLEEIRKAPEAALNIVLC 200 (398)
T ss_dssp --HHTTEEEEEEEETTBCHHHHHHGGGSSEEEESS
T ss_pred --HHCCCceEEEeCCCCCHHHHHhCCcCcEEEEec
Confidence 012344444455667777777777777777664
No 282
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.49 E-value=1.8e+02 Score=27.19 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=48.7
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC--C-----hhhhHHHHHHHHHHHHhhCCCCc--
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS--S-----LQQDAMEIDQLISYLINKDNSEG-- 166 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S--s-----l~~~~eDL~~lIe~L~~~~~~~~-- 166 (224)
.|+..+|.|- .. -..+..|.++||.|+.+|--+. |+-.. . +..|+.|=+.+-+-+. ++..+-
T Consensus 2 ~iLVtGGAGY--IG----SHtv~~Ll~~G~~vvV~DNL~~--g~~~~v~~~~~~f~~gDi~D~~~L~~vf~-~~~idaVi 72 (329)
T COG1087 2 KVLVTGGAGY--IG----SHTVRQLLKTGHEVVVLDNLSN--GHKIALLKLQFKFYEGDLLDRALLTAVFE-ENKIDAVV 72 (329)
T ss_pred eEEEecCcch--hH----HHHHHHHHHCCCeEEEEecCCC--CCHHHhhhccCceEEeccccHHHHHHHHH-hcCCCEEE
Confidence 4677777652 11 1356677789999999986321 22110 0 1123444333333333 333332
Q ss_pred ----EEEEEEch------------hHHHHHHHHHHhcccccccceEEEEc
Q 027344 167 ----VVLLGHST------------GCQDIVHYMRANAACSRAVRAAIFQV 200 (224)
Q Consensus 167 ----VvLvGHSm------------GG~val~ya~~~~~~~~~V~gvIL~a 200 (224)
...||-|+ |-+..++.+.++ .|+.+|..+
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~-----gv~~~vFSS 117 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQT-----GVKKFIFSS 117 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHh-----CCCEEEEec
Confidence 23567775 555555555554 699999876
No 283
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=49.32 E-value=49 Score=23.97 Aligned_cols=28 Identities=14% Similarity=-0.041 Sum_probs=16.7
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhC
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKE 123 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~ 123 (224)
+|+.-||-........++..+++.|.++
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~ 29 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAES 29 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHH
Confidence 3455599764312345666777777654
No 284
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.28 E-value=1.3e+02 Score=23.65 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=39.0
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
+.-.|.++.. .......+.+.+ .....++.+.+...-...+ .+.++..++++++++.++++.+..+|++++-
T Consensus 24 v~n~g~~G~~-~~~~~~~l~~~~-~~~pd~vvl~~G~ND~~~~-~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 24 VANRGISGDT-TRGLLARLDEDV-ALQPKAIFIMIGINDLAQG-TSDEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred eEecCccccc-HHHHHHHHHHHh-ccCCCEEEEEeeccCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4455655432 122334444343 2344555554421111112 2346677888888888887666778888765
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.11 E-value=1.3e+02 Score=29.12 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=44.4
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHH-HHHHHHHHhccccccc
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQ-DIVHYMRANAACSRAV 193 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~-val~ya~~~~~~~~~V 193 (224)
.+.+.+.+++|.++.+|-. |+...+ .+.++++..+++...... ...++||=-++.++ .+...+..+ ..-.+
T Consensus 290 ~l~~~l~~~~~D~VLIDTa----Gr~~rd-~~~l~eL~~~~~~~~~~~-~~e~~LVLsAt~~~~~~~~~~~~f--~~~~~ 361 (432)
T PRK12724 290 KFKETLARDGSELILIDTA----GYSHRN-LEQLERMQSFYSCFGEKD-SVENLLVLSSTSSYHHTLTVLKAY--ESLNY 361 (432)
T ss_pred HHHHHHHhCCCCEEEEeCC----CCCccC-HHHHHHHHHHHHhhcCCC-CCeEEEEEeCCCCHHHHHHHHHHh--cCCCC
Confidence 4556666679999999952 332211 234455555544332111 23456666655555 666666665 35688
Q ss_pred ceEEEE
Q 027344 194 RAAIFQ 199 (224)
Q Consensus 194 ~gvIL~ 199 (224)
+++|+.
T Consensus 362 ~glIlT 367 (432)
T PRK12724 362 RRILLT 367 (432)
T ss_pred CEEEEE
Confidence 999985
No 286
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=48.94 E-value=55 Score=29.30 Aligned_cols=69 Identities=10% Similarity=0.032 Sum_probs=45.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCC-cEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKER-WSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~G-y~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~V 167 (224)
++-+|++.||..+..-.....+.+++.+.++| -.|-...+. ..+| ......++.+.++++.+++.+++.
T Consensus 218 P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~--~~~H----~~~~~~~~~~a~~Wl~~rf~G~~~ 287 (290)
T PF03583_consen 218 PTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYP--GGGH----LGAAFASAPDALAWLDDRFAGKPA 287 (290)
T ss_pred CCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecC--CCCh----hhhhhcCcHHHHHHHHHHHCCCCC
Confidence 45688999999887655666778888888889 455333221 1122 233456677888888877766553
No 287
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=48.72 E-value=21 Score=31.93 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=20.9
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
.||++|-.. .....+..+.+.|.++||+++.+
T Consensus 232 ~IILmHd~~---~T~~aL~~iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 232 AMVLMHPTA---SSTEGLEEMITIIKEKGYKIGTI 263 (268)
T ss_pred cEEEEcCCc---cHHHHHHHHHHHHHHCCCEEEeH
Confidence 466667432 23456777777777888887765
No 288
>COG0400 Predicted esterase [General function prediction only]
Probab=48.57 E-value=80 Score=27.18 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=39.5
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLI 159 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~ 159 (224)
...+|+++||--+-......-..+.++|.+.|..|...++. .||... .++++++.+++.
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~---~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE---GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred CCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec---CCCcCC-----HHHHHHHHHHHH
Confidence 46789999997664444555667889999999999887762 355432 344555555554
No 289
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=48.36 E-value=1.3e+02 Score=23.89 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=39.8
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
|.-.|+++.. ...++..+.+.+.+..+.++.+.+...-...+ ....+..+.++++++.+++. ..++++++
T Consensus 34 v~n~g~~G~~-~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~-~~~~~~~~~~~~li~~~~~~--~~~~il~~ 103 (183)
T cd04501 34 VINRGINGDT-TSQMLVRFYEDVIALKPAVVIIMGGTNDIIVN-TSLEMIKDNIRSMVELAEAN--GIKVILAS 103 (183)
T ss_pred EEecCcCCcc-HHHHHHHHHHHHHhcCCCEEEEEeccCccccC-CCHHHHHHHHHHHHHHHHHC--CCcEEEEe
Confidence 4446776532 23455555554544567776665522111222 24567788889999988753 35677765
No 290
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=81 Score=30.53 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHhCCcEEEEEcccCCCCCCCCCC-hhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceE
Q 027344 118 IALDKERWSLVQFLMTSSYTGYGTSS-LQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAA 196 (224)
Q Consensus 118 ~~L~~~Gy~Vi~~Dlrss~~G~G~Ss-l~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gv 196 (224)
+.+.+++|.||.+|-. |+.. -....+++.++.+.+. .+.|++|=-++=||-+..-+..+ ...-.|.++
T Consensus 177 ~~fKke~fdvIIvDTS------GRh~qe~sLfeEM~~v~~ai~----Pd~vi~VmDasiGQaae~Qa~aF-k~~vdvg~v 245 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTS------GRHKQEASLFEEMKQVSKAIK----PDEIIFVMDASIGQAAEAQARAF-KETVDVGAV 245 (483)
T ss_pred HHHHhcCCcEEEEeCC------CchhhhHHHHHHHHHHHhhcC----CCeEEEEEeccccHhHHHHHHHH-HHhhccceE
Confidence 4678899999999963 3322 2345677777776654 56788888888788777777665 122355566
Q ss_pred EEE
Q 027344 197 IFQ 199 (224)
Q Consensus 197 IL~ 199 (224)
|+.
T Consensus 246 IlT 248 (483)
T KOG0780|consen 246 ILT 248 (483)
T ss_pred EEE
Confidence 664
No 291
>PF03283 PAE: Pectinacetylesterase
Probab=48.18 E-value=32 Score=32.11 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhh-C-CCCcEEEEEEchhHHHHHHHHHHhcc-cc--cccceEEEEccccCh
Q 027344 148 AMEIDQLISYLINK-D-NSEGVVLLGHSTGCQDIVHYMRANAA-CS--RAVRAAIFQVLTIDF 205 (224)
Q Consensus 148 ~eDL~~lIe~L~~~-~-~~~~VvLvGHSmGG~val~ya~~~~~-~~--~~V~gvIL~aPv~D~ 205 (224)
...+++++++|..+ . ..++|+|-|-|.||.-++..+..-.. -+ .+|+++.=.+...|.
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~ 199 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFFLDN 199 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEeccccccccc
Confidence 56688889988865 2 35789999999999988876665311 12 355555445555543
No 292
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=47.77 E-value=1.8e+02 Score=26.44 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=64.8
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHH-hCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh-----hCCCCcEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALD-KERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN-----KDNSEGVV 168 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~-----~~~~~~Vv 168 (224)
..|+++.+-..... ..-++.+++.++ +.|..|+.++. +||..+.......-+..+++.+.. +...+.|.
T Consensus 82 ~~i~v~~tc~~~li-GdDi~~v~~~~~~~~~~~vv~~~~----~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vN 156 (399)
T cd00316 82 KVIFVYTTCTTELI-GDDIEAVAKEASKEIGIPVVPAST----PGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVN 156 (399)
T ss_pred CEEEEecCchhhhh-ccCHHHHHHHHHHhhCCceEEeeC----CCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEE
Confidence 34444444333222 334556777665 34788888875 466533334455557777777754 22345699
Q ss_pred EEEEchhHH-HH---HHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhcccc
Q 027344 169 LLGHSTGCQ-DI---VHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLLS 221 (224)
Q Consensus 169 LvGHSmGG~-va---l~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~~ 221 (224)
|+|.+.... .. .+++.+. .++-..+...-.+.+....+..+.-|+.+.
T Consensus 157 lig~~~~~~~d~~el~~ll~~~-----G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~ 208 (399)
T cd00316 157 LIGGYNLGGGDLRELKRLLEEM-----GIRVNALFDGGTTVEELRELGNAKLNLVLC 208 (399)
T ss_pred EECCCCCchhhHHHHHHHHHHc-----CCcEEEEcCCCCCHHHHHhhccCcEEEEec
Confidence 999988764 22 2233222 233322322225666667777777776654
No 293
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=47.39 E-value=1.3e+02 Score=28.39 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=39.7
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEccc---CCCCCCCCCChhhhHHHHHHHHHHHH--hhCCCCcEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMT---SSYTGYGTSSLQQDAMEIDQLISYLI--NKDNSEGVV 168 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlr---ss~~G~G~Ssl~~~~eDL~~lIe~L~--~~~~~~~Vv 168 (224)
+.+||++.-+.......+....-.+.|.+.|+.|+-+... +...|.|+ + .+.+||...++.+. +...+++|+
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr--~-~~~~~I~~~~~~~~~~~~l~gk~vl 192 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGR--M-AEPEEIVAAAERALSPKDLAGKRVL 192 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCCCcCCCC--C-CCHHHHHHHHHHHhhhcccCCCEEE
Confidence 4456666655332222233445567788899999876531 11223343 2 23555544444332 224456777
Q ss_pred EEEE
Q 027344 169 LLGH 172 (224)
Q Consensus 169 LvGH 172 (224)
+-|-
T Consensus 193 ITgG 196 (399)
T PRK05579 193 ITAG 196 (399)
T ss_pred EeCC
Confidence 7776
No 294
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=47.16 E-value=2.6e+02 Score=26.79 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=54.5
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCC-------------Chh---------hhH----
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTS-------------SLQ---------QDA---- 148 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~S-------------sl~---------~~~---- 148 (224)
+.|++|+=+ +. +..++ ..+.+.+.+.|..++.+|......-.... +++ +.+
T Consensus 2 ~tI~iigT~-DT-K~~E~-~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~ 78 (403)
T PF06792_consen 2 KTIAIIGTL-DT-KGEEL-LYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMA 78 (403)
T ss_pred CEEEEEEcc-CC-CHHHH-HHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHH
Confidence 345555443 32 32232 23666777899999999984221110000 110 111
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF 198 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL 198 (224)
+-+..+++.+.++-..+-|+=+|-|+|..++...++.- |--+-+++.
T Consensus 79 ~ga~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~L---PiG~PKlmV 125 (403)
T PF06792_consen 79 RGAARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRAL---PIGFPKLMV 125 (403)
T ss_pred HHHHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhC---CCCCCeEEE
Confidence 22223333333333456799999999999999999875 555555554
No 295
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=47.15 E-value=1.9e+02 Score=26.66 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=63.5
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHh-CCcEEEEEcccCCCCCCCC-CChhhhHHHHHHHHHHHHhh-----CCCCc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDK-ERWSLVQFLMTSSYTGYGT-SSLQQDAMEIDQLISYLINK-----DNSEG 166 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~-~Gy~Vi~~Dlrss~~G~G~-Ssl~~~~eDL~~lIe~L~~~-----~~~~~ 166 (224)
+|.+|+|-.-+-...-..-++.+++.+.+ .|..|+.++. +||.. +.......-++++++++..+ .....
T Consensus 87 ~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t----~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~ 162 (406)
T cd01967 87 PPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNC----EGFRGVSQSLGHHIANDAILDHLVGTKEPEEKTPYD 162 (406)
T ss_pred CCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeC----CCeeCCcccHHHHHHHHHHHHHhcCCCCcCCCCCCe
Confidence 45556654422211223445667776653 4788888876 36644 44445555577777777532 23456
Q ss_pred EEEEEEchhHHHH---HHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhccc
Q 027344 167 VVLLGHSTGCQDI---VHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLL 220 (224)
Q Consensus 167 VvLvGHSmGG~va---l~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~ 220 (224)
|.|+|........ ..++.+. .|+-......-.+.+....+..+.=|+.+
T Consensus 163 VNiig~~~~~~d~~el~~lL~~~-----Gi~~~~~~~~~~~~~~i~~~~~A~~niv~ 214 (406)
T cd01967 163 VNIIGEYNIGGDAWVIKPLLEEL-----GIRVNATFTGDGTVDELRRAHRAKLNLVH 214 (406)
T ss_pred EEEEeccccchhHHHHHHHHHHc-----CCEEEEEeCCCCCHHHHhhCccCCEEEEE
Confidence 9999985322222 2233222 33433334345566666666666666654
No 296
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=46.95 E-value=78 Score=30.62 Aligned_cols=79 Identities=23% Similarity=0.194 Sum_probs=57.8
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
|..+||..+++.|.+-|..-+++ |+. |..+ -...-++|+.+++..+ -+|.|=.|-+-|+-.+.|+...
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciKDma------Gllt----P~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAv 221 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIKDMA------GLLT----PYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAV 221 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeeccc------ccCC----hHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHH
Confidence 77788889999999999877776 542 3322 2345667777777666 6799999999999999999875
Q ss_pred cccccccceEE
Q 027344 187 AACSRAVRAAI 197 (224)
Q Consensus 187 ~~~~~~V~gvI 197 (224)
-++.+.|+-+|
T Consensus 222 EAGvD~iDTAi 232 (472)
T COG5016 222 EAGVDGIDTAI 232 (472)
T ss_pred HhCcchhhhhh
Confidence 33445555544
No 297
>PRK05568 flavodoxin; Provisional
Probab=46.87 E-value=70 Score=24.74 Aligned_cols=63 Identities=10% Similarity=0.188 Sum_probs=35.9
Q ss_pred hcHHHHHHHHHhCCcEEEEEcccCCC-------C--CCCCCChhhhH---HHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 111 EYLEPLAIALDKERWSLVQFLMTSSY-------T--GYGTSSLQQDA---MEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 111 ~y~~~La~~L~~~Gy~Vi~~Dlrss~-------~--G~G~Ssl~~~~---eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
...+.+++.+.+.|..|..+|+.... . .+|...+...+ ..+..+++.+......++++++|.+
T Consensus 17 ~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~ 91 (142)
T PRK05568 17 AMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSY 91 (142)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEcc
Confidence 44556777777778887777764211 1 12222222111 3456666666544457889999984
No 298
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.82 E-value=2.5e+02 Score=26.34 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=60.3
Q ss_pred hcHHHHHHHHHh-----CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh---CCCCcEEEEEEch--hH--HH
Q 027344 111 EYLEPLAIALDK-----ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK---DNSEGVVLLGHST--GC--QD 178 (224)
Q Consensus 111 ~y~~~La~~L~~-----~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~---~~~~~VvLvGHSm--GG--~v 178 (224)
.-++.+++.+.+ .|..|+.++- +||..+.......-++++++.+... ....+|.|+|.+. ++ ..
T Consensus 98 dDi~~v~~~~~~~~~~~~~~~vi~v~t----pgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~e 173 (428)
T cd01965 98 DDVAGFIKEFRAEGPEPADFPVVYAST----PSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVRE 173 (428)
T ss_pred CCHHHHHHHHHhhccCCCCCeEEEeeC----CCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHH
Confidence 445678888874 5888988865 4665554555566677788776542 2345699997554 32 33
Q ss_pred HHHHHHHhcccccccceEEEE-------cc-----------ccChHHHHHHHHhhhhcccc
Q 027344 179 IVHYMRANAACSRAVRAAIFQ-------VL-----------TIDFEIFVVLLIASHNLLLS 221 (224)
Q Consensus 179 al~ya~~~~~~~~~V~gvIL~-------aP-----------v~D~e~~~~~~~~~~n~~~~ 221 (224)
+.+++.+. .++-.++. +| -...+..+.+..+.-|+.+.
T Consensus 174 l~~lL~~~-----Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~ 229 (428)
T cd01965 174 IKRILEAF-----GLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALG 229 (428)
T ss_pred HHHHHHHc-----CCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEEC
Confidence 44444443 33333332 12 24566667777777777664
No 299
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=45.95 E-value=54 Score=27.00 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHH
Q 027344 149 MEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 149 eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
+++.++++.++. .+++|+++|=+..|...++|+.-
T Consensus 55 ~~l~~~L~~~~~--~gk~I~~yGA~~kg~tlln~~g~ 89 (160)
T PF08484_consen 55 AELREFLEKLKA--EGKRIAGYGAGAKGNTLLNYFGL 89 (160)
T ss_dssp HHHHHHHHHHHH--TT--EEEE---SHHHHHHHHHT-
T ss_pred HHHHHHHHHHHH--cCCEEEEECcchHHHHHHHHhCC
Confidence 344444444443 36789999999999999999875
No 300
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=45.30 E-value=1.8e+02 Score=24.50 Aligned_cols=73 Identities=7% Similarity=-0.095 Sum_probs=39.1
Q ss_pred HHHHHHhCCc-EEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEch----hHHHHHHHHHHhcccc
Q 027344 116 LAIALDKERW-SLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHST----GCQDIVHYMRANAACS 190 (224)
Q Consensus 116 La~~L~~~Gy-~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSm----GG~val~ya~~~~~~~ 190 (224)
.++.+...|. +|+..|. +.+.... .+....++..+.++.+ -.++|+||+. |..++-..+.+- +.
T Consensus 68 ~~~~l~~~G~d~V~~~~~----~~~~~~~----~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarL--ga 136 (202)
T cd01714 68 ALREALAMGADRAILVSD----RAFAGAD----TLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELL--GW 136 (202)
T ss_pred HHHHHHHcCCCEEEEEec----ccccCCC----hHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHh--CC
Confidence 3334444565 6776653 2333222 3333333333333333 4799999999 777777777764 23
Q ss_pred cccceEEEE
Q 027344 191 RAVRAAIFQ 199 (224)
Q Consensus 191 ~~V~gvIL~ 199 (224)
.-+..++-+
T Consensus 137 ~lvsdv~~l 145 (202)
T cd01714 137 PQITYVSKI 145 (202)
T ss_pred CccceEEEE
Confidence 344444433
No 301
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=45.20 E-value=49 Score=24.69 Aligned_cols=20 Identities=25% Similarity=0.021 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCcEEEEEcc
Q 027344 113 LEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 113 ~~~La~~L~~~Gy~Vi~~Dl 132 (224)
+..++..|+++||.|..+|.
T Consensus 17 l~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEES
T ss_pred HHHHHHHHHHCCCeEEEECC
Confidence 44578889999999998875
No 302
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=44.94 E-value=1e+02 Score=30.93 Aligned_cols=81 Identities=19% Similarity=0.072 Sum_probs=58.2
Q ss_pred CCChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHH
Q 027344 107 FFATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 107 ~~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
.|...|+..+++.+.+.|...+.+ |. -|... -+++.++++.++++.+ .+|.+=+|..-|+-...++..
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDt------aG~l~----P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laA 218 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDM------AGLLT----PTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEA 218 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCc------ccCCC----HHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHH
Confidence 477788888999998888777665 43 23322 4567788888877665 689999999999988887766
Q ss_pred hcccccccceEEE
Q 027344 186 NAACSRAVRAAIF 198 (224)
Q Consensus 186 ~~~~~~~V~gvIL 198 (224)
...+.+.|+..|.
T Consensus 219 ieaGad~iD~ai~ 231 (596)
T PRK14042 219 VLAGCNHIDTAIS 231 (596)
T ss_pred HHhCCCEEEeccc
Confidence 5344566666554
No 303
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=44.48 E-value=44 Score=30.71 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCceEEEECCCC-CCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCC
Q 027344 93 YQQQVIFIGGLT-DGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGT 141 (224)
Q Consensus 93 ~~~~IVfVHGlg-~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~ 141 (224)
.+-+||-|+.++ ++.--++....|++.|.++||++..+- +|||.
T Consensus 33 ~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS-----RGYg~ 77 (326)
T PF02606_consen 33 LPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS-----RGYGR 77 (326)
T ss_pred CCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc-----CCCCC
Confidence 345688888775 333447888899999999999998774 36665
No 304
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=44.34 E-value=26 Score=30.26 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=17.4
Q ss_pred CCCcEEEEEEchhHHHHHHHHH
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMR 184 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~ 184 (224)
....|+++|||+|-..--.+-.
T Consensus 233 ~i~~I~i~GhSl~~~D~~Yf~~ 254 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEVDYPYFEE 254 (270)
T ss_pred CCCEEEEEeCCCchhhHHHHHH
Confidence 4578999999999987665543
No 305
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.23 E-value=1.4e+02 Score=28.63 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHHHhCCcEEEEEcccCCCCCCCCCCh-hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceE
Q 027344 118 IALDKERWSLVQFLMTSSYTGYGTSSL-QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAA 196 (224)
Q Consensus 118 ~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gv 196 (224)
+.+..++|.++.+|.. |+... +..++++.++.+.+ ....++||--++=|+.+...+..+. ..-.+.|+
T Consensus 176 ~~~~~~~~DvVIIDTa------Gr~~~d~~l~~eL~~i~~~~----~p~e~lLVvda~tgq~~~~~a~~f~-~~v~i~gi 244 (428)
T TIGR00959 176 EYAKENGFDVVIVDTA------GRLQIDEELMEELAAIKEIL----NPDEILLVVDAMTGQDAVNTAKTFN-ERLGLTGV 244 (428)
T ss_pred HHHHhcCCCEEEEeCC------CccccCHHHHHHHHHHHHhh----CCceEEEEEeccchHHHHHHHHHHH-hhCCCCEE
Confidence 3445678999999963 33222 33455565555533 2456788888888899999888762 23478899
Q ss_pred EEEc
Q 027344 197 IFQV 200 (224)
Q Consensus 197 IL~a 200 (224)
|+.-
T Consensus 245 IlTK 248 (428)
T TIGR00959 245 VLTK 248 (428)
T ss_pred EEeC
Confidence 9863
No 306
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=43.88 E-value=49 Score=30.28 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=31.8
Q ss_pred CceEEEECCCC-CCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCC
Q 027344 94 QQQVIFIGGLT-DGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGT 141 (224)
Q Consensus 94 ~~~IVfVHGlg-~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~ 141 (224)
.-+||.|+-+. ++.--++....|++.|.++|+++..+- +|||.
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS-----RGYg~ 70 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS-----RGYGS 70 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC-----CCCCC
Confidence 34567787775 444457888899999999999998874 36664
No 307
>PLN02834 3-dehydroquinate synthase
Probab=43.62 E-value=3e+02 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=26.9
Q ss_pred cHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh
Q 027344 112 YLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN 160 (224)
Q Consensus 112 y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~ 160 (224)
|.+.+.+.|.+.|+.+..+|.- .+ -|.. ....+.+.++++.+++
T Consensus 115 ~~~~v~~~L~~~g~~~~v~~~v--~~-~gE~--~ksl~~v~~~~~~l~~ 158 (433)
T PLN02834 115 YLEKVVEALTAKGPELTVESVI--LP-DGEK--YKDMETLMKVFDKALE 158 (433)
T ss_pred HHHHHHHHHHhcCCceEEEEEE--ec-CCcC--CCCHHHHHHHHHHHHh
Confidence 7778888998888765544321 01 1221 2336778888887775
No 308
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.01 E-value=2.7e+02 Score=26.28 Aligned_cols=120 Identities=8% Similarity=0.069 Sum_probs=59.7
Q ss_pred CCCccccccccccEEEEeCCCCce---EEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhC-----CcEEEEEccc
Q 027344 62 GGPVVMGKNQFRGVLFKYGPKPVQ---VAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKE-----RWSLVQFLMT 133 (224)
Q Consensus 62 ~~p~~m~~~~~~g~l~~y~~~~~~---v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~-----Gy~Vi~~Dlr 133 (224)
++|.++..-.+.-.-..|+...+. |-......+|-+|+|-.-+-...-..-++.+++.++++ +..|+.++.
T Consensus 50 ~~~~~~~sT~l~E~d~V~Gg~~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~t- 128 (435)
T cd01974 50 KEPVSAVSSSMTEDAAVFGGQNNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFANT- 128 (435)
T ss_pred CCCcCCCccCCCCCceEECcHHHHHHHHHHHHHhcCCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEecC-
Confidence 455555554555555555552111 11111112354454433221112234456677777654 688888875
Q ss_pred CCCCCCCCCChhhhHHHHHHHHHHHHhh----CCCCcEEEEE--EchhH--HHHHHHHHH
Q 027344 134 SSYTGYGTSSLQQDAMEIDQLISYLINK----DNSEGVVLLG--HSTGC--QDIVHYMRA 185 (224)
Q Consensus 134 ss~~G~G~Ssl~~~~eDL~~lIe~L~~~----~~~~~VvLvG--HSmGG--~val~ya~~ 185 (224)
+||-.+.......-++++++++... .....|.|+| |..+. ..+.+++.+
T Consensus 129 ---pgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~ 185 (435)
T cd01974 129 ---PSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLEL 185 (435)
T ss_pred ---CCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHH
Confidence 3554444445555566777766532 2234688887 44443 344445544
No 309
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.56 E-value=62 Score=24.42 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=12.5
Q ss_pred HHHHHHHhCCcEEEEE
Q 027344 115 PLAIALDKERWSLVQF 130 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~ 130 (224)
-++..|.++||.|+..
T Consensus 18 ~~~~~l~~~G~~V~~l 33 (119)
T cd02067 18 IVARALRDAGFEVIDL 33 (119)
T ss_pred HHHHHHHHCCCEEEEC
Confidence 4677888899999643
No 310
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=42.04 E-value=1.3e+02 Score=29.47 Aligned_cols=81 Identities=19% Similarity=0.048 Sum_probs=56.7
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCC-CCcEEEEEEchhHHHHHHHHHH
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDN-SEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~-~~~VvLvGHSmGG~val~ya~~ 185 (224)
+...|+..+++.+.+.|...+.+ |. .|... -+++.++++.|+++.+ ..+|.+=+|..-|+-...++..
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDt----aGll~------P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laA 221 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDM----AALLK------PQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKA 221 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC----ccCCC------HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHH
Confidence 56677788888888888777665 43 13222 4567888888887764 5689999999988888887766
Q ss_pred hcccccccceEEE
Q 027344 186 NAACSRAVRAAIF 198 (224)
Q Consensus 186 ~~~~~~~V~gvIL 198 (224)
-..+.+.|+..|.
T Consensus 222 ieAGad~vDtai~ 234 (499)
T PRK12330 222 IEAGVDVVDTAIS 234 (499)
T ss_pred HHcCCCEEEeecc
Confidence 4334556665554
No 311
>PRK10566 esterase; Provisional
Probab=41.99 E-value=1.2e+02 Score=25.16 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=35.8
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcE--EEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWS--LVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN 160 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~--Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~ 160 (224)
.+++++||--|..........+.+.|.++|.. +...-+. ..||+.. .+.+++.+++|++
T Consensus 187 ~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~--~~~H~~~-----~~~~~~~~~fl~~ 247 (249)
T PRK10566 187 RPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEP--GVRHRIT-----PEALDAGVAFFRQ 247 (249)
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecC--CCCCccC-----HHHHHHHHHHHHh
Confidence 46899999777655555666788888887752 3333221 2245432 2346666666653
No 312
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=41.88 E-value=68 Score=27.93 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=56.7
Q ss_pred CCCCCcccc-----ccccccEEEEeCCCC-ceEEEee---CCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEE
Q 027344 60 DMGGPVVMG-----KNQFRGVLFKYGPKP-VQVAFKT---GDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 60 ~~~~p~~m~-----~~~~~g~l~~y~~~~-~~v~y~~---g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
..|++..++ +..+-|++..++-.+ ..+-+.. +.....|++.||-.+-.-..++-...+++|...|.+ +.+
T Consensus 101 s~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~~~~~~~~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~-~~f 179 (206)
T KOG2112|consen 101 SQGGALALYSALTYPKALGGIFALSGFLPRASIGLPGWLPGVNYTPILLCHGTADPLVPFRFGEKSAQFLKSLGVR-VTF 179 (206)
T ss_pred CchHHHHHHHHhccccccceeeccccccccchhhccCCccccCcchhheecccCCceeehHHHHHHHHHHHHcCCc-eee
Confidence 345555443 233455555555544 2333332 112467889999776554455666677888888888 333
Q ss_pred cccCCCCCCCCCChhhhHHHHHHHHHH
Q 027344 131 LMTSSYTGYGTSSLQQDAMEIDQLISY 157 (224)
Q Consensus 131 Dlrss~~G~G~Ssl~~~~eDL~~lIe~ 157 (224)
. .|+|-+.+...+..+|+...++.
T Consensus 180 -~--~y~g~~h~~~~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 180 -K--PYPGLGHSTSPQELDDLKSWIKT 203 (206)
T ss_pred -e--ecCCccccccHHHHHHHHHHHHH
Confidence 2 35688887777888888777764
No 313
>PRK06523 short chain dehydrogenase; Provisional
Probab=41.88 E-value=1.6e+02 Score=24.75 Aligned_cols=54 Identities=6% Similarity=-0.023 Sum_probs=30.6
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCCCCC-C-Chh---hhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTGYGT-S-SLQ---QDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G~G~-S-sl~---~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
.++++|.++|++|+..+.+... ..+. . .+. .+.++++++++.+.++.+.-.+++
T Consensus 24 ~ia~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 82 (260)
T PRK06523 24 ATVARLLEAGARVVTTARSRPD-DLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILV 82 (260)
T ss_pred HHHHHHHHCCCEEEEEeCChhh-hcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4788888899999988753211 1111 0 011 135667777777766554333433
No 314
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.31 E-value=1.5e+02 Score=28.56 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=54.3
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+...|+..+++.+.+.|...+.+ |. .|... -+++.++++.++++.+ .+|.+=+|..-|+-..+++...
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt----~G~l~------P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAi 219 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDM----AGILT------PYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAI 219 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCC----CCCCC------HHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHH
Confidence 45566677777777777666555 42 13222 4567778888887765 6799999998888888877765
Q ss_pred cccccccceEEE
Q 027344 187 AACSRAVRAAIF 198 (224)
Q Consensus 187 ~~~~~~V~gvIL 198 (224)
..+.+.|+..|.
T Consensus 220 eaGad~vD~sv~ 231 (448)
T PRK12331 220 EAGADIIDTAIS 231 (448)
T ss_pred HcCCCEEEeecc
Confidence 345566776655
No 315
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.99 E-value=1.8e+02 Score=27.48 Aligned_cols=90 Identities=8% Similarity=0.094 Sum_probs=47.4
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC--CCCCCCChhhhHHHHHHHHH-HHHh--hCCCCcEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY--TGYGTSSLQQDAMEIDQLIS-YLIN--KDNSEGVVL 169 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~--~G~G~Ssl~~~~eDL~~lIe-~L~~--~~~~~~VvL 169 (224)
.+||++.-+.+.....+....-...|.+.|+.|+-+.- +-+ ...|...+ ...+||...+. .+.. ...+++|++
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~-g~~ac~~~g~g~~-~~~~~i~~~v~~~~~~~~~~~~~~vli 190 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDS-GLLACGDEGKGRL-AEPETIVKAAEREFSPKEDLEGKRVLI 190 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCC-cccccccccCCCC-CCHHHHHHHHHHHHhhccccCCceEEE
Confidence 45666666543322223334456678888999887652 111 11222222 23455544333 3322 244567777
Q ss_pred EEE------------------chhHHHHHHHHHHh
Q 027344 170 LGH------------------STGCQDIVHYMRAN 186 (224)
Q Consensus 170 vGH------------------SmGG~val~ya~~~ 186 (224)
-|- .||..++.++..+.
T Consensus 191 t~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G 225 (390)
T TIGR00521 191 TAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG 225 (390)
T ss_pred ecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC
Confidence 776 47777777777653
No 316
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=40.93 E-value=68 Score=23.74 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHhh---CCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 145 QQDAMEIDQLISYLINK---DNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~~---~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
....+++++.|+|++.+ .+.++|.++|-|.|=.++.+.+..+
T Consensus 17 ~GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 17 VGCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 35678899999999863 3458899999999999887777665
No 317
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=40.79 E-value=96 Score=27.44 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCcEEEEEcccCC--------CCCCCC-CChhh---hHHHHHHHHHHHHhhCC
Q 027344 114 EPLAIALDKERWSLVQFLMTSS--------YTGYGT-SSLQQ---DAMEIDQLISYLINKDN 163 (224)
Q Consensus 114 ~~La~~L~~~Gy~Vi~~Dlrss--------~~G~G~-Ssl~~---~~eDL~~lIe~L~~~~~ 163 (224)
+.++..|.++|++|+..|+++. .+|+|. +.+.- ..+|++..++...+..+
T Consensus 28 rAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g 89 (256)
T KOG1200|consen 28 RAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLG 89 (256)
T ss_pred HHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcC
Confidence 4577888899999999999653 245543 23332 25667776666655443
No 318
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.78 E-value=1.5e+02 Score=27.75 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=52.2
Q ss_pred HHHhCCcEEEEEcccCCCCCCCC-CChhhhHHHHHHHHHHHHhhCC--CCcEEEEEEchhHHHHHHHHHHhcccccccce
Q 027344 119 ALDKERWSLVQFLMTSSYTGYGT-SSLQQDAMEIDQLISYLINKDN--SEGVVLLGHSTGCQDIVHYMRANAACSRAVRA 195 (224)
Q Consensus 119 ~L~~~Gy~Vi~~Dlrss~~G~G~-Ssl~~~~eDL~~lIe~L~~~~~--~~~VvLvGHSmGG~val~ya~~~~~~~~~V~g 195 (224)
+-.++||.|+..|-. |+ ..-.+.+++|..+.+-+....+ ...++|+--++-|+-++.=++.+ ...-.|+|
T Consensus 216 ~Akar~~DvvliDTA------GRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~l~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTA------GRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVGLDG 288 (340)
T ss_pred HHHHcCCCEEEEeCc------ccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcCCce
Confidence 334578888888853 22 1235668888888777664322 34588888999999999988887 23457889
Q ss_pred EEEE
Q 027344 196 AIFQ 199 (224)
Q Consensus 196 vIL~ 199 (224)
+||.
T Consensus 289 iIlT 292 (340)
T COG0552 289 IILT 292 (340)
T ss_pred EEEE
Confidence 9885
No 319
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=40.32 E-value=87 Score=25.85 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=27.6
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
++.||++-|+.++-+. ..-..|.+.|.++|+.++.+|-
T Consensus 1 ~g~vIwltGlsGsGKt-TlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKT-TLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp S-EEEEEESSTTSSHH-HHHHHHHHHHHHTTS-EEEEEH
T ss_pred CCEEEEEECCCCCCHH-HHHHHHHHHHHHcCCcEEEecC
Confidence 4689999999876544 3345678888899999999974
No 320
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=39.96 E-value=69 Score=26.87 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=32.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEccc---CCCCCCCCCChhhhHHHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMT---SSYTGYGTSSLQQDAMEIDQLISYL 158 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlr---ss~~G~G~Ssl~~~~eDL~~lIe~L 158 (224)
+.+||++.-+.......+...+-.+.|.+.|+.|+-+... +...|+|+ ..+.+||.+.++..
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~---~~~~~~i~~~v~~~ 177 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGA---LADIETILETIENT 177 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCC---CCCHHHHHHHHHHH
Confidence 4456666554322112233445567788899999977631 12234444 33456666555543
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=39.91 E-value=1.8e+02 Score=26.90 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHhCCcEEEEEcccCCCCCCCCCC-hhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE
Q 027344 120 LDKERWSLVQFLMTSSYTGYGTSS-LQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF 198 (224)
Q Consensus 120 L~~~Gy~Vi~~Dlrss~~G~G~Ss-l~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL 198 (224)
...+|+.++.+|-. |+.. -.+.+++|+.+++.+ ....++||.-++-|+.++.-+..+ ...-.++++|+
T Consensus 218 ~~~~~~DvVLIDTa------Gr~~~~~~lm~eL~~i~~~~----~pd~~iLVl~a~~g~d~~~~a~~f-~~~~~~~giIl 286 (336)
T PRK14974 218 AKARGIDVVLIDTA------GRMHTDANLMDELKKIVRVT----KPDLVIFVGDALAGNDAVEQAREF-NEAVGIDGVIL 286 (336)
T ss_pred HHhCCCCEEEEECC------CccCCcHHHHHHHHHHHHhh----CCceEEEeeccccchhHHHHHHHH-HhcCCCCEEEE
Confidence 34568999999963 3322 234466666665533 245688888888888888777665 12357899998
Q ss_pred E
Q 027344 199 Q 199 (224)
Q Consensus 199 ~ 199 (224)
.
T Consensus 287 T 287 (336)
T PRK14974 287 T 287 (336)
T ss_pred e
Confidence 5
No 322
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.90 E-value=1.3e+02 Score=23.21 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=27.9
Q ss_pred HHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 120 LDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 120 L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
+.+....++.+.+...-...+ .+.++..++++++++.+++..+..+|++++
T Consensus 36 ~~~~~pd~vvi~~G~ND~~~~-~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 36 VLAAKPDVVLLHLGTNDLVLN-RDPDTAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred cccCCCCEEEEeccCcccccC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 334455555554421111122 245566778888888887765555566654
No 323
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=39.90 E-value=1e+02 Score=27.42 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=38.4
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC------CCCCCCCh---hhhHHHHHHHHHHHHhhCCC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY------TGYGTSSL---QQDAMEIDQLISYLINKDNS 164 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~------~G~G~Ssl---~~~~eDL~~lIe~L~~~~~~ 164 (224)
+.+|++-+|-.+ . =..|+++|.+.|-.|+.---+-.. .-.+.... -.|.+.+++++++++++++.
T Consensus 5 gnTiLITGG~sG-I-----Gl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~ 78 (245)
T COG3967 5 GNTILITGGASG-I-----GLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPN 78 (245)
T ss_pred CcEEEEeCCcch-h-----hHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCc
Confidence 346676677443 1 135889999999999874211000 00000011 12455678899999987764
Q ss_pred CcEE
Q 027344 165 EGVV 168 (224)
Q Consensus 165 ~~Vv 168 (224)
-+|+
T Consensus 79 lNvl 82 (245)
T COG3967 79 LNVL 82 (245)
T ss_pred hhee
Confidence 4443
No 324
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=39.61 E-value=39 Score=29.30 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=17.9
Q ss_pred hCC-CCcEEEEEEchhHHHHHHHH
Q 027344 161 KDN-SEGVVLLGHSTGCQDIVHYM 183 (224)
Q Consensus 161 ~~~-~~~VvLvGHSmGG~val~ya 183 (224)
+.+ .++..++|||+|=..++..+
T Consensus 78 ~~g~i~p~~v~GhS~GE~aAa~~a 101 (290)
T TIGR00128 78 EQGGLKPDFAAGHSLGEYSALVAA 101 (290)
T ss_pred HcCCCCCCEEeecCHHHHHHHHHh
Confidence 345 78899999999987776554
No 325
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=39.57 E-value=28 Score=31.84 Aligned_cols=86 Identities=20% Similarity=0.151 Sum_probs=48.1
Q ss_pred hhcHHHHHHHHHhC-CcEEEEEc-----ccCCCCCCCCCC-hhhhHHHHHHHHHHHHhhC--------------------
Q 027344 110 TEYLEPLAIALDKE-RWSLVQFL-----MTSSYTGYGTSS-LQQDAMEIDQLISYLINKD-------------------- 162 (224)
Q Consensus 110 ~~y~~~La~~L~~~-Gy~Vi~~D-----lrss~~G~G~Ss-l~~~~eDL~~lIe~L~~~~-------------------- 162 (224)
..+...|.++|.+. .|+++.+| +|-+|.|.|.-+ ..+..+.+..-+..|.+++
T Consensus 196 melv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga~~~f 275 (335)
T KOG1434|consen 196 MELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTF 275 (335)
T ss_pred HHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcccccc
Confidence 44556677788876 68888877 366677776422 2233344433333343321
Q ss_pred -CCCcEEEEEEchhHHHHHHHHHHhcccccccce
Q 027344 163 -NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRA 195 (224)
Q Consensus 163 -~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~g 195 (224)
..++.-+.||||+=.-+.+.+.+.....+||..
T Consensus 276 ~s~~~kp~gGh~~aHAsttRlilrkgrg~eR~Ak 309 (335)
T KOG1434|consen 276 ASQDLKPAGGHSWAHASTTRLILRKGRGDERVAK 309 (335)
T ss_pred cccccCccccchhhhhhheeEEEEcCCcceeeee
Confidence 122455679999877666655544223445543
No 326
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=39.51 E-value=2.2e+02 Score=23.64 Aligned_cols=32 Identities=6% Similarity=0.110 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
..++++.+|.+. . =..+++.|.++|++|+..+
T Consensus 12 ~k~vlItG~~g~-i-----G~~la~~l~~~G~~Vi~~~ 43 (247)
T PRK08945 12 DRIILVTGAGDG-I-----GREAALTYARHGATVILLG 43 (247)
T ss_pred CCEEEEeCCCch-H-----HHHHHHHHHHCCCcEEEEe
Confidence 346666666432 1 1246777888999999876
No 327
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.30 E-value=92 Score=24.56 Aligned_cols=29 Identities=28% Similarity=0.443 Sum_probs=22.2
Q ss_pred ChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 143 SLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 143 sl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
..++..+.++++++.++++.+..+|+++.
T Consensus 83 ~~~~~~~~l~~~v~~~~~~~~~~~ii~~~ 111 (191)
T cd01834 83 GLEKFKTNLRRLIDRLKNKESAPRIVLVS 111 (191)
T ss_pred cHHHHHHHHHHHHHHHHcccCCCcEEEEC
Confidence 45667788999999997555667788875
No 328
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=39.04 E-value=1.1e+02 Score=26.06 Aligned_cols=46 Identities=22% Similarity=0.049 Sum_probs=33.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGT 141 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~ 141 (224)
.+.++|++-|+.++-..+-. -.|.++|.++|--.+.+| ++...||.
T Consensus 29 qkGcviWiTGLSgSGKStlA-CaL~q~L~qrgkl~Y~LD--GDNvRhGL 74 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLA-CALSQALLQRGKLTYILD--GDNVRHGL 74 (207)
T ss_pred CCCcEEEEeccCCCCchhHH-HHHHHHHHhcCceEEEec--Cccccccc
Confidence 46799999999876554332 347788889998888887 44456665
No 329
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=38.50 E-value=53 Score=28.88 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=18.5
Q ss_pred hCCCCcEEEEEEchhHHHHHHHH
Q 027344 161 KDNSEGVVLLGHSTGCQDIVHYM 183 (224)
Q Consensus 161 ~~~~~~VvLvGHSmGG~val~ya 183 (224)
+.+.++..++|||+|=..++..+
T Consensus 72 ~~g~~P~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 72 ALLPRPSAVAGYSVGEYAAAVVA 94 (295)
T ss_pred hcCCCCcEEeecCHHHHHHHHHh
Confidence 45678999999999988776654
No 330
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=38.26 E-value=58 Score=27.12 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=25.9
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
.-|.+++.||+++....... .+..|.+.++.++..+.
T Consensus 48 ~~p~v~~~h~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 84 (299)
T COG1073 48 KLPAVVFLHGFGSSKEQSLG---YAVLLAEKGYRVLAGDA 84 (299)
T ss_pred cCceEEeccCccccccCcch---HHHHhhhceeEEeeecc
Confidence 45789999999875433222 55666778888888775
No 331
>PRK12467 peptide synthase; Provisional
Probab=38.19 E-value=2e+02 Score=35.20 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=55.1
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccC-CCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTS-SYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrs-s~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
.+.|+.+|....... .+..++..|. .+..++.+..+. ...++-...++..+....+.+ +...+..+..|.|+
T Consensus 3692 ~~~l~~~h~~~r~~~---~~~~l~~~l~-~~~~~~~l~~~~~~~d~~~~~~~~~~~~~y~~~~---~~~~~~~p~~l~g~ 3764 (3956)
T PRK12467 3692 FPALFCRHEGLGTVF---DYEPLAVILE-GDRHVLGLTCRHLLDDGWQDTSLQAMAVQYADYI---LWQQAKGPYGLLGW 3764 (3956)
T ss_pred ccceeeechhhcchh---hhHHHHHHhC-CCCcEEEEeccccccccCCccchHHHHHHHHHHH---HHhccCCCeeeeee
Confidence 355788888654322 2345676665 356677665431 112332233333344443333 33334557999999
Q ss_pred chhHHHHHHHHHHhcccccccceEEEE
Q 027344 173 STGCQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 173 SmGG~val~ya~~~~~~~~~V~gvIL~ 199 (224)
|+||.++.+.+..-....+.++-+.++
T Consensus 3765 s~g~~~a~~~~~~l~~~g~~~~~~~~~ 3791 (3956)
T PRK12467 3765 SLGGTLARLVAELLEREGESEAFLGLF 3791 (3956)
T ss_pred ecchHHHHHHHHHHHHcCCceeEEEEE
Confidence 999999988776542234555555443
No 332
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=38.03 E-value=48 Score=26.36 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHH
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDI 179 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~va 179 (224)
..+...-+++.....+.+.|+++||+==|.+-
T Consensus 38 ~~~~~~sle~av~~l~v~~IiV~gHt~CGa~~ 69 (153)
T PF00484_consen 38 DDSALASLEYAVYHLGVKEIIVCGHTDCGAIK 69 (153)
T ss_dssp -HHHHHHHHHHHHTST-SEEEEEEETT-HHHH
T ss_pred ccchhhheeeeeecCCCCEEEEEcCCCchHHH
Confidence 45666777777777788999999998544443
No 333
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=38.00 E-value=59 Score=30.15 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=31.7
Q ss_pred CceEEEECCCC-CCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCC
Q 027344 94 QQQVIFIGGLT-DGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGT 141 (224)
Q Consensus 94 ~~~IVfVHGlg-~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~ 141 (224)
.-+||.|+-++ ++.--++....|++.|.++|+++..+- +|||.
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS-----RGYg~ 98 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS-----RGYGA 98 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe-----cCCCC
Confidence 34678887775 333447888899999999999998774 36664
No 334
>PRK06398 aldose dehydrogenase; Validated
Probab=37.86 E-value=1.7e+02 Score=24.85 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=31.0
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCCCCCCChh---hhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTGYGTSSLQ---QDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~---~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
.+++.|.++|+.|+..+..... ......+. .+.++++++++.+.++.+.-.+++
T Consensus 21 ~ia~~l~~~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 21 AVVNRLKEEGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred HHHHHHHHCCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4788888899999988753211 00000011 135677888888776654334443
No 335
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=37.69 E-value=47 Score=30.57 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=37.6
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC---CCCcEEEEEEc
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD---NSEGVVLLGHS 173 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~---~~~~VvLvGHS 173 (224)
...+++|++.=+++|++|..++..--+..|+. . ..+.+.|+..|+++.++. ..+-|+|+|.-
T Consensus 10 ~~~~~~la~~r~~~G~~~~vv~v~~I~~~f~~-G-~~~~~aIR~fi~~~y~~~~~~~~~yvlLvGd~ 74 (378)
T PF01364_consen 10 MDAAQRLAEWRRSQGYKVLVVTVEDIYNEFSY-G-IPDPTAIRNFIRYAYDNWSPPKPRYVLLVGDA 74 (378)
T ss_dssp GGG-HHHHHHHHHTT-EEEEEEHHHH-SS---------HHHHHHHHHHHHHST----EEEEEEES-T
T ss_pred HHHHHHHHHHHHHcCCcEEEEEHHHhhhhhhh-c-cccHHHHHHHHHHHHHhcccCCCcEEEEEccc
Confidence 34567788777778999999886433333321 1 236777999999998765 33449999987
No 336
>PRK10867 signal recognition particle protein; Provisional
Probab=37.57 E-value=2.2e+02 Score=27.39 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=45.5
Q ss_pred HHHhCCcEEEEEcccCCCCCCCCCCh-hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEE
Q 027344 119 ALDKERWSLVQFLMTSSYTGYGTSSL-QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAI 197 (224)
Q Consensus 119 ~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvI 197 (224)
.....+|.++.+|.. |+... +..++++..+.+.+ ....++||--++=|+.++..+..+. ..-.+.|+|
T Consensus 178 ~a~~~~~DvVIIDTa------Grl~~d~~lm~eL~~i~~~v----~p~evllVlda~~gq~av~~a~~F~-~~~~i~giI 246 (433)
T PRK10867 178 EAKENGYDVVIVDTA------GRLHIDEELMDELKAIKAAV----NPDEILLVVDAMTGQDAVNTAKAFN-EALGLTGVI 246 (433)
T ss_pred HHHhcCCCEEEEeCC------CCcccCHHHHHHHHHHHHhh----CCCeEEEEEecccHHHHHHHHHHHH-hhCCCCEEE
Confidence 344568999999963 33222 33455555555543 2456778877888899988888762 234678998
Q ss_pred EEc
Q 027344 198 FQV 200 (224)
Q Consensus 198 L~a 200 (224)
+.-
T Consensus 247 lTK 249 (433)
T PRK10867 247 LTK 249 (433)
T ss_pred EeC
Confidence 853
No 337
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=37.53 E-value=1e+02 Score=28.70 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=41.0
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC----CCC-------CCCC---hhhhHHHHHHHHHHHH
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY----TGY-------GTSS---LQQDAMEIDQLISYLI 159 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~----~G~-------G~Ss---l~~~~eDL~~lIe~L~ 159 (224)
-|.|+|.-|-+. +.+.|.+.||.|+.+|+.-+- .-. |.-+ +-..-+.|.+.++...
T Consensus 252 vPmi~fakG~g~----------~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv 321 (359)
T KOG2872|consen 252 VPMILFAKGSGG----------ALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMV 321 (359)
T ss_pred CceEEEEcCcch----------HHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHH
Confidence 478999888532 335566789999999994221 011 2111 1123466777777666
Q ss_pred hhCCCCc-EEEEEEc
Q 027344 160 NKDNSEG-VVLLGHS 173 (224)
Q Consensus 160 ~~~~~~~-VvLvGHS 173 (224)
++++.++ |+=+||-
T Consensus 322 ~~fG~~ryI~NLGHG 336 (359)
T KOG2872|consen 322 KDFGKSRYIANLGHG 336 (359)
T ss_pred HHhCccceEEecCCC
Confidence 6665444 5556763
No 338
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=37.42 E-value=1.1e+02 Score=27.67 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEEchhH
Q 027344 147 DAMEIDQLISYLINKDNSEGVVLLGHSTGC 176 (224)
Q Consensus 147 ~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG 176 (224)
..+++.+.++...++-+.-..|++=||+||
T Consensus 71 ~~e~i~~~ir~~~E~cD~~~gf~i~~slgG 100 (328)
T cd00286 71 YQEEILDIIRKEAEECDSLQGFFITHSLGG 100 (328)
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEeecCC
Confidence 556666677766666566678999999987
No 339
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=37.36 E-value=2.6e+02 Score=24.88 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=48.5
Q ss_pred CChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc
Q 027344 108 FATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA 187 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~ 187 (224)
....-++.++++|.+.|..-+.+. +.-|.. ..-..++-.++++.+.+..+.+-.+++|=+..-..+++.++..
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~-----GstGE~-~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a- 95 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAA-----GGTGEF-FSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLA- 95 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEC-----CCCcCc-ccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHH-
Confidence 344556788899988887766553 111221 1122445556666555543444445555432234455555543
Q ss_pred ccccccceEEEEcccc
Q 027344 188 ACSRAVRAAIFQVLTI 203 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv~ 203 (224)
....+++++++.|.-
T Consensus 96 -~~~Gadav~~~pP~y 110 (296)
T TIGR03249 96 -EKAGADGYLLLPPYL 110 (296)
T ss_pred -HHhCCCEEEECCCCC
Confidence 345778888887753
No 340
>PRK10824 glutaredoxin-4; Provisional
Probab=37.33 E-value=2e+02 Score=22.47 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=48.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
..++|||.-|-.+. -..+|-....+.|.+.|.....+|.- ++ .++++.+..+....-...||+=|.
T Consensus 14 ~~~Vvvf~Kg~~~~-p~Cpyc~~ak~lL~~~~i~~~~idi~------------~d-~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 14 ENPILLYMKGSPKL-PSCGFSAQAVQALSACGERFAYVDIL------------QN-PDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred cCCEEEEECCCCCC-CCCchHHHHHHHHHHcCCCceEEEec------------CC-HHHHHHHHHHhCCCCCCeEEECCE
Confidence 46899999984321 12356666666777777544444431 11 234444444433333457999999
Q ss_pred chhHHHHHHHHHHh
Q 027344 173 STGCQDIVHYMRAN 186 (224)
Q Consensus 173 SmGG~val~ya~~~ 186 (224)
--||...+.-+.+.
T Consensus 80 ~IGG~ddl~~l~~~ 93 (115)
T PRK10824 80 LVGGCDIVIEMYQR 93 (115)
T ss_pred EEcChHHHHHHHHC
Confidence 99999888877653
No 341
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=37.17 E-value=1.8e+02 Score=29.07 Aligned_cols=80 Identities=21% Similarity=0.159 Sum_probs=56.1
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+...|+..+++.+.+.|...+.+ |. .|.. .-+++.++++.++++.+ .+|.+=.|..-|+-+..++..-
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt------~G~~----~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv 219 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDM------AGLL----TPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAV 219 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCc------CCCc----CHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHH
Confidence 44567777788787777766655 43 2221 24567888888887765 6799999999888888877765
Q ss_pred cccccccceEEE
Q 027344 187 AACSRAVRAAIF 198 (224)
Q Consensus 187 ~~~~~~V~gvIL 198 (224)
..+.+.|++.|.
T Consensus 220 ~aGad~vD~ai~ 231 (592)
T PRK09282 220 EAGVDIIDTAIS 231 (592)
T ss_pred HhCCCEEEeecc
Confidence 345667777665
No 342
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=37.16 E-value=83 Score=28.18 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=29.4
Q ss_pred CceEEEE-CCCCCCCCChhcHHHHHHHHHhCCcE-EEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEE
Q 027344 94 QQQVIFI-GGLTDGFFATEYLEPLAIALDKERWS-LVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLL 170 (224)
Q Consensus 94 ~~~IVfV-HGlg~~~~~~~y~~~La~~L~~~Gy~-Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLv 170 (224)
...+||+ ||-.. .....+..|...|.+.++. |+.--. .|+. +++++++.|+++ +.++|.|+
T Consensus 141 ~~a~vlmGHGt~h--~an~~Y~~l~~~l~~~~~~~v~vgtv----EG~P---------~~~~vi~~L~~~-g~k~V~L~ 203 (262)
T PF06180_consen 141 DEAVVLMGHGTPH--PANAAYSALQAMLKKHGYPNVFVGTV----EGYP---------SLEDVIARLKKK-GIKKVHLI 203 (262)
T ss_dssp TEEEEEEE---SC--HHHHHHHHHHHHHHCCT-TTEEEEET----TSSS---------BHHHHHHHHHHH-T-SEEEEE
T ss_pred CCEEEEEeCCCCC--CccHHHHHHHHHHHhCCCCeEEEEEe----CCCC---------CHHHHHHHHHhc-CCCeEEEE
Confidence 4456665 99542 2344566788888877632 332111 1321 245556666543 45667665
No 343
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=37.13 E-value=32 Score=30.81 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=19.0
Q ss_pred hhCCCCcEEEEEEchhHHHHHHHH
Q 027344 160 NKDNSEGVVLLGHSTGCQDIVHYM 183 (224)
Q Consensus 160 ~~~~~~~VvLvGHSmGG~val~ya 183 (224)
+..+.++-+++|||+|=..++..+
T Consensus 79 ~~~Gi~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 79 RSWGIKPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHTTHCESEEEESTTHHHHHHHHT
T ss_pred cccccccceeeccchhhHHHHHHC
Confidence 356788999999999988776553
No 344
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=36.93 E-value=1.2e+02 Score=27.11 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=21.8
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
++++|--+.-+ ....+.+..++..+|.++|.++
T Consensus 55 vLL~G~rGtGK-SSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 55 VLLWGARGTGK-SSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred eEEecCCCCCH-HHHHHHHHHHHhhcCceEEEEC
Confidence 45567654333 3455667777788899998875
No 345
>cd08587 PI-PLCXDc_like Catalytic domain of phosphatidylinositol-specific phospholipase C X domain containing and similar proteins. This family corresponds to the catalytic domain present in phosphatidylinositol-specific phospholipase C X domain containing proteins (PI-PLCXD) which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs mainly found in eukaryota. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs and their bacterial homologs contain a single TIM-barrel type catalytic domain, X domain, which is more closely related to that of bacterial PI-PLCs. Although the biological function of eukaryotic PI-PLCXDs still remains unclear, it may be
Probab=36.92 E-value=1.8e+02 Score=25.73 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=31.1
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTS 134 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrs 134 (224)
...+.++||..........+..+.++|.+.--.|+.+++..
T Consensus 79 ~~~~~~~H~~~~~~~~~~~l~~i~~fl~~~p~Evvil~~~~ 119 (288)
T cd08587 79 ENKLYFVHGLYSGEPVDEVLEDVNDFLDEHPKEVVILDFNH 119 (288)
T ss_pred CCeEEEEeecccccCHHHHHHHHHHHHHhCCCcEEEEEEEc
Confidence 35788999976533445677888889988778899999853
No 346
>PRK09767 hypothetical protein; Provisional
Probab=36.75 E-value=2.1e+02 Score=22.48 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh
Q 027344 92 DYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN 160 (224)
Q Consensus 92 ~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~ 160 (224)
.....+|.+.|- .+.....+...=.+.|+..||.|+.+.. .+..+|++.+++.+..
T Consensus 53 ~~~rLaIE~DG~-~H~~~~~~D~~R~~~L~~~G~~VlRf~n------------~dV~~~~~~Vl~~I~~ 108 (117)
T PRK09767 53 CSARVVVELDGG-QHDLAVAYDTRRTSWLESQGWTVLRFWN------------NEIDCNEEAVLEIILQ 108 (117)
T ss_pred cccCEEEEEeCc-ccchhHHHHHHHHHHHHHCCCEEEEEEH------------HHHHhCHHHHHHHHHH
Confidence 345688899882 2211123333335678899999998742 3344566666666554
No 347
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.43 E-value=1.2e+02 Score=27.32 Aligned_cols=64 Identities=16% Similarity=0.005 Sum_probs=39.0
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCC-CC--hhhhHHHHHHHHHHHHhhCCCCcEEEEEEchh
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGT-SS--LQQDAMEIDQLISYLINKDNSEGVVLLGHSTG 175 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~-Ss--l~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmG 175 (224)
+.-.+.++++-++.||.-+.+|-...+.+.+. .+ -.....||.++++|.+++ +-.|.|..|+-+
T Consensus 31 t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K--gVgi~lw~~~~~ 97 (273)
T PF10566_consen 31 TETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK--GVGIWLWYHSET 97 (273)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT--T-EEEEEEECCH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc--CCCEEEEEeCCc
Confidence 44456677777789999999985222111111 11 122358899999999975 457999999998
No 348
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=36.36 E-value=24 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=7.0
Q ss_pred CCceEEEECCCCCC
Q 027344 93 YQQQVIFIGGLTDG 106 (224)
Q Consensus 93 ~~~~IVfVHGlg~~ 106 (224)
.+++|++.||+.++
T Consensus 42 ~k~pVll~HGL~~s 55 (63)
T PF04083_consen 42 KKPPVLLQHGLLQS 55 (63)
T ss_dssp T--EEEEE--TT--
T ss_pred CCCcEEEECCcccC
Confidence 57899999999764
No 349
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=36.32 E-value=2.6e+02 Score=24.85 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=47.7
Q ss_pred ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcc
Q 027344 109 ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAA 188 (224)
Q Consensus 109 ~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~ 188 (224)
...-++.+++++.+.|..-+.+. ..-|... .-..++-.++++.+.+..+.+--+++|=..+-..++++++..
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~-----GstGE~~-~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a-- 90 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAA-----GGTGEFF-SLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAA-- 90 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-----cCCcCcc-cCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHH--
Confidence 34556778888888888776553 1122211 112445555565555443333223334333445666666654
Q ss_pred cccccceEEEEccc
Q 027344 189 CSRAVRAAIFQVLT 202 (224)
Q Consensus 189 ~~~~V~gvIL~aPv 202 (224)
..-.+++++++.|.
T Consensus 91 ~~~Gad~v~~~pP~ 104 (289)
T cd00951 91 EKAGADGILLLPPY 104 (289)
T ss_pred HHhCCCEEEECCCC
Confidence 35578899888775
No 350
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=36.19 E-value=1e+02 Score=29.87 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=41.8
Q ss_pred CCceEEEECCCCCCC----CChhcHHHHHHHHHhC------CcEEEEEcccCCCCCCCCCCh-hhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGF----FATEYLEPLAIALDKE------RWSLVQFLMTSSYTGYGTSSL-QQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~----~~~~y~~~La~~L~~~------Gy~Vi~~Dlrss~~G~G~Ssl-~~~~eDL~~lIe~L~~~ 161 (224)
.+..||+-||+.+.. ....|++++.+.+... =||++.+ .+-+|..... ....+-|.++++++.+-
T Consensus 352 ~GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~v----PGm~HC~gG~g~~~~d~l~aL~~WVE~G 427 (474)
T PF07519_consen 352 RGGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMV----PGMGHCGGGPGPDPFDALTALVDWVENG 427 (474)
T ss_pred cCCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEec----CCCcccCCCCCCCCCCHHHHHHHHHhCC
Confidence 356899999999875 3478999998887432 3444432 1122222111 22346677888888643
Q ss_pred CCCCcEEE
Q 027344 162 DNSEGVVL 169 (224)
Q Consensus 162 ~~~~~VvL 169 (224)
...+.|+.
T Consensus 428 ~AP~~l~a 435 (474)
T PF07519_consen 428 KAPETLVA 435 (474)
T ss_pred CCCCeeEE
Confidence 33333333
No 351
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=35.76 E-value=4.2e+02 Score=25.88 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=63.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHH-hCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh-----------
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALD-KERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK----------- 161 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~----------- 161 (224)
+|-+|+|-.-+-...-..-+..+++.+. +.+..|+.++.. ||-.+.+.....-+.++++.+.++
T Consensus 85 ~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~~~pVi~v~t~----~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~ 160 (513)
T CHL00076 85 RPDLIVLTPTCTSSILQEDLQNFVDRASIESDSDVILADVN----HYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSK 160 (513)
T ss_pred CCCEEEECCCCchhhhhcCHHHHHHHhhcccCCCEEEeCCC----CCcccHHHHHHHHHHHHHHHHhhcccccccccccC
Confidence 4656665443322222345566777665 357888888863 554444433333466777765431
Q ss_pred CCCCcEEEEEEchhH-------HHHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhccc
Q 027344 162 DNSEGVVLLGHSTGC-------QDIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLL 220 (224)
Q Consensus 162 ~~~~~VvLvGHSmGG-------~val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~ 220 (224)
....+|-|+|-...+ ..+.+++... .|+-.++...-...+....++.+.=|+.+
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~-----Gi~vn~v~~~g~sl~di~~~~~A~~NIvl 221 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDL-----GIEINQIIPEGGSVEDLKNLPKAWFNIVP 221 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHC-----CCeEEEEECCCCCHHHHHhcccCcEEEEe
Confidence 123469999876443 1223333332 34444344344567777777777777765
No 352
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.73 E-value=65 Score=22.04 Aligned_cols=33 Identities=24% Similarity=0.144 Sum_probs=22.0
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
+++-|.++ .--+.....++..|.+.|++|+.+|
T Consensus 2 ~~~~g~~G-~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGG-VGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 34445442 2224455678899988999998887
No 353
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=35.54 E-value=62 Score=28.23 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=18.7
Q ss_pred hCCCCcEEEEEEchhHHHHHHHH
Q 027344 161 KDNSEGVVLLGHSTGCQDIVHYM 183 (224)
Q Consensus 161 ~~~~~~VvLvGHSmGG~val~ya 183 (224)
+.+.++-+++|||+|=..++..+
T Consensus 78 ~~Gi~p~~~~GhSlGE~aA~~~a 100 (298)
T smart00827 78 SWGVRPDAVVGHSLGEIAAAYVA 100 (298)
T ss_pred HcCCcccEEEecCHHHHHHHHHh
Confidence 46778899999999998876654
No 354
>PRK08226 short chain dehydrogenase; Provisional
Probab=35.43 E-value=1.7e+02 Score=24.52 Aligned_cols=18 Identities=11% Similarity=0.157 Sum_probs=14.9
Q ss_pred HHHHHHHhCCcEEEEEcc
Q 027344 115 PLAIALDKERWSLVQFLM 132 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dl 132 (224)
.+++.|.++|++|+..+.
T Consensus 21 ~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 21 GIARVFARHGANLILLDI 38 (263)
T ss_pred HHHHHHHHCCCEEEEecC
Confidence 478888889999998874
No 355
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=35.28 E-value=74 Score=29.33 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=27.1
Q ss_pred ceEEEECCCC-CCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 95 QQVIFIGGLT-DGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 95 ~~IVfVHGlg-~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
-+||-|+.++ ++.--++....|++.|.++|++|..+-
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 3566776654 333347888889999999999998874
No 356
>cd08622 PI-PLCXDc_CG14945_like Catalytic domain of Drosophila melanogaster CG14945-like proteins similar to phosphatidylinositol-specific phospholipase C, X domain containing. This subfamily corresponds to the catalytic domain present in uncharacterized metazoan Drosophila melanogaster CG14945-like proteins, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI
Probab=35.23 E-value=1.3e+02 Score=27.02 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=31.9
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCC
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYG 140 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G 140 (224)
..+.++||+.........+..+.++|.+. -.|+.+|+..-+.|+.
T Consensus 68 ~~~~~~Hg~~~~~~l~~vL~~v~~Fl~~~-~EvVil~~~~f~~~~~ 112 (276)
T cd08622 68 DNFWINHDLVRIVPLLTVLNDVRNFVQNT-GEIVVLDFHRFPVGFH 112 (276)
T ss_pred CcEEEECcccccccHHHHHHHHHHHHHHC-CCEEEEEEEccCcCCC
Confidence 56888999764333456778888889887 8999999864333443
No 357
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.13 E-value=3e+02 Score=24.84 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=53.7
Q ss_pred ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc-hhHHHHHHHHHHhc
Q 027344 109 ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS-TGCQDIVHYMRANA 187 (224)
Q Consensus 109 ~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS-mGG~val~ya~~~~ 187 (224)
...-++.++++|.+.|..=+.+. +.-|... .-..++-.++++...+..+.+-.+++|-. ++-..++++++..
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~-----GstGE~~-~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A- 99 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTM-----GTFGECA-TLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRAL- 99 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-----cccccch-hCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHH-
Confidence 34556778888888887666543 1122211 12245555666655554445555667775 6778888888775
Q ss_pred ccccccceEEEEccc
Q 027344 188 ACSRAVRAAIFQVLT 202 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv 202 (224)
....+++++++.|.
T Consensus 100 -~~~Gad~vlv~~P~ 113 (309)
T cd00952 100 -LDLGADGTMLGRPM 113 (309)
T ss_pred -HHhCCCEEEECCCc
Confidence 35588999998884
No 358
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=35.08 E-value=48 Score=32.81 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=20.3
Q ss_pred hhCCCCcEEEEEEchhHHHHHHHHH
Q 027344 160 NKDNSEGVVLLGHSTGCQDIVHYMR 184 (224)
Q Consensus 160 ~~~~~~~VvLvGHSmGG~val~ya~ 184 (224)
+..+.++-+++|||+|=..++..+.
T Consensus 260 ~~~GI~Pdav~GHSlGE~aAa~aAG 284 (538)
T TIGR02816 260 DEFAIKPDFALGYSKGEASMWASLG 284 (538)
T ss_pred HhcCCCCCEEeecCHHHHHHHHHhC
Confidence 4578889999999999887776654
No 359
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=35.02 E-value=1.9e+02 Score=21.44 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=48.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
..++|||..|..+ ..+-+|-....+.|.+.|.....+|.. ++ .++.+.+..+........|++=|.
T Consensus 11 ~~~Vvvf~kg~~~-~~~Cp~C~~ak~lL~~~~i~~~~~di~------------~~-~~~~~~l~~~tg~~tvP~vfi~g~ 76 (97)
T TIGR00365 11 ENPVVLYMKGTPQ-FPQCGFSARAVQILKACGVPFAYVNVL------------ED-PEIRQGIKEYSNWPTIPQLYVKGE 76 (97)
T ss_pred cCCEEEEEccCCC-CCCCchHHHHHHHHHHcCCCEEEEECC------------CC-HHHHHHHHHHhCCCCCCEEEECCE
Confidence 4689999988632 223466667778888888877776651 11 123333333322223345777778
Q ss_pred chhHHHHHHHHHH
Q 027344 173 STGCQDIVHYMRA 185 (224)
Q Consensus 173 SmGG~val~ya~~ 185 (224)
-.||..-+.-+.+
T Consensus 77 ~iGG~ddl~~l~~ 89 (97)
T TIGR00365 77 FVGGCDIIMEMYQ 89 (97)
T ss_pred EEeChHHHHHHHH
Confidence 8999988876665
No 360
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.90 E-value=3e+02 Score=24.29 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=49.6
Q ss_pred ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEch-hHHHHHHHHHHhc
Q 027344 109 ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHST-GCQDIVHYMRANA 187 (224)
Q Consensus 109 ~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSm-GG~val~ya~~~~ 187 (224)
...-++.++++|.+.|..-+.+. .+.+.++-. ..++-.++++.+.+..+.+--+++|-+- .-..++++++..
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~l-----s~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a- 92 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVV-GTTGESPTL-----THEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFA- 92 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-CcCCccccC-----CHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHH-
Confidence 34556678888888888777653 111111111 2344444555554443344345677664 555677776664
Q ss_pred ccccccceEEEEccc
Q 027344 188 ACSRAVRAAIFQVLT 202 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv 202 (224)
..-.+++++++.|.
T Consensus 93 -~~~G~d~v~~~pP~ 106 (292)
T PRK03170 93 -EKAGADGALVVTPY 106 (292)
T ss_pred -HHcCCCEEEECCCc
Confidence 34588888888875
No 361
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.81 E-value=2e+02 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 146 QDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 146 ~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
+..+++..+++.++++.+..+|+|++
T Consensus 75 ~~~~~~~~~i~~i~~~~p~~~iil~~ 100 (177)
T cd01844 75 MVRERLGPLVKGLRETHPDTPILLVS 100 (177)
T ss_pred HHHHHHHHHHHHHHHHCcCCCEEEEe
Confidence 56788999999998877777888887
No 362
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=34.80 E-value=1e+02 Score=27.39 Aligned_cols=98 Identities=13% Similarity=0.238 Sum_probs=55.0
Q ss_pred cccEEEEeCCCCceEEEeeCC---------CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEE-----EEE----ccc
Q 027344 72 FRGVLFKYGPKPVQVAFKTGD---------YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSL-----VQF----LMT 133 (224)
Q Consensus 72 ~~g~l~~y~~~~~~v~y~~g~---------~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~V-----i~~----Dlr 133 (224)
...+++-|+.--.|..|.+++ .+..=|++-|+.+ ...+|...+....-.++-.+ +.+ |--
T Consensus 5 ~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysG--ynSRwALkvL~~ifp~~~s~~p~lvtVffGaNDs~ 82 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSG--YNSRWALKVLPEIFPKGSSIQPVLVTVFFGANDSC 82 (245)
T ss_pred ccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhccccc--chhHHHHHHhhhhccccccCCceEEEEEecCcccc
Confidence 456788888866677787764 2445566678765 33444444443332233222 111 110
Q ss_pred CCCCCC-C-CCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 134 SSYTGY-G-TSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 134 ss~~G~-G-~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
..+++. | .-.++++.+.+++++++|+...+..+|||++
T Consensus 83 l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlit 122 (245)
T KOG3035|consen 83 LPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILIT 122 (245)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEec
Confidence 111111 2 1346788999999999998655556677764
No 363
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=34.63 E-value=1.5e+02 Score=24.34 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.7
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcc
Q 027344 110 TEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
..+-+.+.++|.++||.|+ |+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~--D~ 32 (148)
T PRK05571 12 FELKEEIIEHLEELGHEVI--DL 32 (148)
T ss_pred HHHHHHHHHHHHHCCCEEE--Ec
Confidence 4566678899999999986 55
No 364
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.37 E-value=76 Score=21.53 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=37.5
Q ss_pred cHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--h-hhhHH-HHHHHHHHHHhhCCCCcEEEEE
Q 027344 112 YLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--L-QQDAM-EIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 112 y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--l-~~~~e-DL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+..+.+.+.+.|..+..+.......++..-. + ..+.+ .+..+++.|++-.+...|.++|
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~~ 76 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELVG 76 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEeC
Confidence 56678888999999998887632111221111 1 13455 7888888888655555666654
No 365
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=34.12 E-value=1.8e+02 Score=24.10 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=27.9
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCCCCC-C-Chh---hhHHHHHHHHHHHHhhCC
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTGYGT-S-SLQ---QDAMEIDQLISYLINKDN 163 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G~G~-S-sl~---~~~eDL~~lIe~L~~~~~ 163 (224)
.+++.|.++|++|+..+.+. ....+. . .+. .+.+++.++++.+.++.+
T Consensus 23 ~la~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK08220 23 AVALAFVEAGAKVIGFDQAF-LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETG 75 (252)
T ss_pred HHHHHHHHCCCEEEEEecch-hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 47788888999999987532 011111 0 011 235567777777665544
No 366
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=33.98 E-value=1.8e+02 Score=23.92 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=16.8
Q ss_pred hhcHHHHHHHHHh--CCcEEEEEcc
Q 027344 110 TEYLEPLAIALDK--ERWSLVQFLM 132 (224)
Q Consensus 110 ~~y~~~La~~L~~--~Gy~Vi~~Dl 132 (224)
..+-+.|.++|++ +||.|+ |+
T Consensus 14 ~~lK~~l~~~L~~~~~g~eV~--D~ 36 (151)
T PTZ00215 14 FDLKNEIIDYIKNKGKEYKIE--DM 36 (151)
T ss_pred HHHHHHHHHHHHhccCCCEEE--Ec
Confidence 4566778999999 999997 55
No 367
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=33.97 E-value=1.8e+02 Score=22.95 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=30.6
Q ss_pred CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 123 ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 123 ~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
....++.+.+...-...+..+..+..+++..+++.++. +..+|+|++.
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~--~~~~vil~~~ 113 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRA--AGARVVVFTI 113 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHh--CCCEEEEecC
Confidence 46677776553222223244556678889999999883 4567888864
No 368
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=33.94 E-value=2e+02 Score=28.80 Aligned_cols=80 Identities=21% Similarity=0.089 Sum_probs=55.0
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+...|+..+++.+.+.|...+.+ |. -|.. .-.++.++++.++++.+ .+|.+=+|-.-|+-+.+++...
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~Dt------~G~~----~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv 214 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKDM------AGIL----TPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAI 214 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC------CCCc----CHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHH
Confidence 44567777888888777766655 43 2222 14567888888887766 6799999999998888877765
Q ss_pred cccccccceEEE
Q 027344 187 AACSRAVRAAIF 198 (224)
Q Consensus 187 ~~~~~~V~gvIL 198 (224)
..+...|++.|.
T Consensus 215 eaGa~~vd~ai~ 226 (582)
T TIGR01108 215 EAGADGIDTAIS 226 (582)
T ss_pred HhCCCEEEeccc
Confidence 344556666544
No 369
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.74 E-value=2.8e+02 Score=26.87 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEE-EEchhHHHHHHHHHHhcccccccceEEEE
Q 027344 123 ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLL-GHSTGCQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 123 ~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLv-GHSmGG~val~ya~~~~~~~~~V~gvIL~ 199 (224)
+++.++.+|.. |++. .+.+.+.++.+.+....+ ..++|+ .=.+++......+..+ ..-.++++|+.
T Consensus 319 ~~~DvVLIDTa------GRs~--kd~~lm~EL~~~lk~~~P-devlLVLsATtk~~d~~~i~~~F--~~~~idglI~T 385 (436)
T PRK11889 319 ARVDYILIDTA------GKNY--RASETVEEMIETMGQVEP-DYICLTLSASMKSKDMIEIITNF--KDIHIDGIVFT 385 (436)
T ss_pred cCCCEEEEeCc------cccC--cCHHHHHHHHHHHhhcCC-CeEEEEECCccChHHHHHHHHHh--cCCCCCEEEEE
Confidence 47899999953 3332 223334444444433223 345555 3357888888888887 34689999985
No 370
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=33.72 E-value=2.1e+02 Score=27.79 Aligned_cols=80 Identities=21% Similarity=0.121 Sum_probs=55.9
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+...|+..+++.+.+.|...+.+ |. .|.. .-+++.++++.++++.+ .+|.+=+|-.-|+-+.+++...
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~Dt----~G~l------~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAi 218 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKDM----AGLL------TPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAV 218 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCc----cCCc------CHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHH
Confidence 45567777888888878766655 43 1322 24567778888887766 6899999999888888877765
Q ss_pred cccccccceEEE
Q 027344 187 AACSRAVRAAIF 198 (224)
Q Consensus 187 ~~~~~~V~gvIL 198 (224)
..+.+.|+..|.
T Consensus 219 eaGad~vD~sv~ 230 (467)
T PRK14041 219 EAGADMFDTAIS 230 (467)
T ss_pred HhCCCEEEeecc
Confidence 345667776665
No 371
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=33.38 E-value=1.6e+02 Score=22.83 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=24.4
Q ss_pred EEEECCCC-CCCCChhcHHHHHHHHHhCCcEEEEEccc
Q 027344 97 VIFIGGLT-DGFFATEYLEPLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 97 IVfVHGlg-~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlr 133 (224)
|++|.|-. .........+.+++.|++.|+.+-.+|++
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred EEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 44555533 22234556667778888889999999884
No 372
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=33.37 E-value=2.1e+02 Score=25.68 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=44.8
Q ss_pred HHHHhCCcEEEEEcccCCCC----CCCCCChhhhHHHHHHHHHHHHhh-CCCCcEEEEEEchhHHH----HHHHHHHhcc
Q 027344 118 IALDKERWSLVQFLMTSSYT----GYGTSSLQQDAMEIDQLISYLINK-DNSEGVVLLGHSTGCQD----IVHYMRANAA 188 (224)
Q Consensus 118 ~~L~~~Gy~Vi~~Dlrss~~----G~G~Ssl~~~~eDL~~lIe~L~~~-~~~~~VvLvGHSmGG~v----al~ya~~~~~ 188 (224)
+.|++.+..|+.+|+-++.. -|| ++..++|....+++|.+. ...-+-+.+|-+.|..- ++..+.++
T Consensus 104 eklk~~~vdvvsLDfvgDn~vIk~vy~---l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~-- 178 (275)
T COG1856 104 EKLKEELVDVVSLDFVGDNDVIKRVYK---LPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNY-- 178 (275)
T ss_pred HHHHHhcCcEEEEeecCChHHHHHHHc---CCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcC--
Confidence 44555677888888742211 122 234477888888877753 22335678999998863 45555544
Q ss_pred cccccceEEEE
Q 027344 189 CSRAVRAAIFQ 199 (224)
Q Consensus 189 ~~~~V~gvIL~ 199 (224)
..+.+||.
T Consensus 179 ---~~DalVl~ 186 (275)
T COG1856 179 ---EPDALVLV 186 (275)
T ss_pred ---CCCeEEEE
Confidence 56666664
No 373
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=33.04 E-value=2.5e+02 Score=24.71 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=26.7
Q ss_pred CCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcE-EEEEcc
Q 027344 91 GDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWS-LVQFLM 132 (224)
Q Consensus 91 g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~-Vi~~Dl 132 (224)
++..+.|+||.-.++ ....|.+...+.|.+.|+. |..++.
T Consensus 25 g~~~~rI~~iptAS~--~~~~~~~~~~~~~~~lG~~~v~~l~i 65 (250)
T TIGR02069 25 GGEDAIIVIITSASE--EPREVGERYITIFSRLGVKEVKILDV 65 (250)
T ss_pred CCCCceEEEEeCCCC--ChHHHHHHHHHHHHHcCCceeEEEec
Confidence 445678899975443 2345667778888888984 555565
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.97 E-value=3.7e+02 Score=24.48 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=45.7
Q ss_pred hCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh--CCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEE
Q 027344 122 KERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK--DNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 122 ~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~--~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~ 199 (224)
.++|.++.+|.. |... .-...++++..+.+.+... .....++|+-..+-|+..+.-+..+ ...-.+.++|+.
T Consensus 194 ~~~~D~ViIDTa----Gr~~-~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f-~~~~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTA----GRLH-NKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF-HEAVGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCC----CCCc-CCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH-HhhCCCCEEEEE
Confidence 478999999963 3222 2244567777776655321 2234578888888888777766554 112368888885
No 375
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=32.92 E-value=2.2e+02 Score=26.14 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
.+..|+|+.|-............+.+.|.+.|+.|+..+.
T Consensus 160 ~~~~v~~f~gC~~~~~~p~~~~a~~~lL~~~G~~v~~~~~ 199 (396)
T PRK11168 160 YKKQVAYFHGCYVNYNHPQLGKDLVKVLNAMGYEVLLPKE 199 (396)
T ss_pred CCCeEEEECccccccCCcHHHHHHHHHHHHCCCEEEcCCC
Confidence 3457888888665544445556677788899999955443
No 376
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=32.88 E-value=3.2e+02 Score=24.47 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=47.9
Q ss_pred CChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhc
Q 027344 108 FATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANA 187 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~ 187 (224)
....-++.++++|.++|..-+.+. . .-|... .-..++-.++++.+.+..+.+--+++|=+..-..++++++..
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~-G----stGE~~-~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a- 97 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAA-G----GTGEFF-SLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAA- 97 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-c----CCcCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHH-
Confidence 344556778899988888766553 1 122211 112344445555554433333334444443445666666654
Q ss_pred ccccccceEEEEccc
Q 027344 188 ACSRAVRAAIFQVLT 202 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv 202 (224)
..-.++++++..|.
T Consensus 98 -~~~Gadav~~~pP~ 111 (303)
T PRK03620 98 -ERAGADGILLLPPY 111 (303)
T ss_pred -HHhCCCEEEECCCC
Confidence 35578899888875
No 377
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=32.82 E-value=96 Score=24.07 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
.+|++++++.= ..++++|+=||+=|.+.....+++
T Consensus 7 ~eql~~i~~~S----~~~~~~iFKHSt~C~IS~~a~~~~ 41 (105)
T PF11009_consen 7 EEQLEEILEES----KEKPVLIFKHSTRCPISAMALREF 41 (105)
T ss_dssp HHHHHHHHHH-------SEEEEEEE-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc----ccCcEEEEEeCCCChhhHHHHHHH
Confidence 56666666642 356899999999999988877664
No 378
>PRK07791 short chain dehydrogenase; Provisional
Probab=32.81 E-value=2.2e+02 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.5
Q ss_pred HHHHHHHhCCcEEEEEccc
Q 027344 115 PLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlr 133 (224)
.+++.|.++|++|+..+.+
T Consensus 21 aia~~la~~G~~vii~~~~ 39 (286)
T PRK07791 21 AHALAFAAEGARVVVNDIG 39 (286)
T ss_pred HHHHHHHHCCCEEEEeeCC
Confidence 5788888899999988753
No 379
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=32.81 E-value=2.1e+02 Score=21.35 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=42.4
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE---EchhHHHHHHHHHHh
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG---HSTGCQDIVHYMRAN 186 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG---HSmGG~val~ya~~~ 186 (224)
.+-+...++.|.++||.|+.+-.- ....|. +. .+-++..++.|.+ -+.|+++. +|-||.+=..++.+.
T Consensus 15 ~~~f~~~a~~L~~~G~~vvnPa~~--~~~~~~-~~---~~ym~~~l~~L~~---cD~i~~l~gWe~S~GA~~E~~~A~~l 85 (92)
T PF14359_consen 15 RPAFNAAAKRLRAKGYEVVNPAEL--GIPEGL-SW---EEYMRICLAMLSD---CDAIYMLPGWENSRGARLEHELAKKL 85 (92)
T ss_pred HHHHHHHHHHHHHCCCEEeCchhh--CCCCCC-CH---HHHHHHHHHHHHh---CCEEEEcCCcccCcchHHHHHHHHHC
Confidence 455677899999999999977432 011222 12 2224444444442 34566665 799999888888775
No 380
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=32.77 E-value=35 Score=28.60 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEchhHHHH
Q 027344 150 EIDQLISYLINKDNSEGVVLLGHSTGCQDI 179 (224)
Q Consensus 150 DL~~lIe~L~~~~~~~~VvLvGHSmGG~va 179 (224)
+....++|.....+.+.|+++|||==|.+.
T Consensus 66 ~~~asleyAv~~L~v~~IvV~GHs~CGav~ 95 (182)
T cd00883 66 NCLSVLQYAVDVLKVKHIIVCGHYGCGGVK 95 (182)
T ss_pred chhhhHHHHHHhcCCCEEEEecCCCchHHH
Confidence 466777877766778899999999544433
No 381
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=32.76 E-value=55 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=25.7
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
+|.|+ |-|+--+++- --.||.+|+++|++|+.+|+
T Consensus 3 ~i~~~-gKGGVGKTT~-a~nLA~~La~~G~rVLliD~ 37 (279)
T PRK13230 3 KFCFY-GKGGIGKSTT-VCNIAAALAESGKKVLVVGC 37 (279)
T ss_pred EEEEE-CCCCCcHHHH-HHHHHHHHHhCCCEEEEEee
Confidence 56666 6665434443 34589999999999999997
No 382
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=32.47 E-value=3.3e+02 Score=23.65 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=48.6
Q ss_pred ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHH-HHHHHHHHhc
Q 027344 109 ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQ-DIVHYMRANA 187 (224)
Q Consensus 109 ~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~-val~ya~~~~ 187 (224)
...-++.++++|.+.|..-+.+. .+.+.++- -..++-.++++.+.+..+.+--+++|=+.... .++++++..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~-GstGE~~~-----ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a- 88 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVL-GTTGEAPT-----LTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHA- 88 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-CCCccccc-----CCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHH-
Confidence 34556678888888888776553 11111121 22455566666665544433344455544333 356665553
Q ss_pred ccccccceEEEEccc
Q 027344 188 ACSRAVRAAIFQVLT 202 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv 202 (224)
..-.++++++..|.
T Consensus 89 -~~~Gad~v~v~pP~ 102 (281)
T cd00408 89 -EEAGADGVLVVPPY 102 (281)
T ss_pred -HHcCCCEEEECCCc
Confidence 34588999888875
No 383
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.36 E-value=4.2e+02 Score=24.69 Aligned_cols=118 Identities=8% Similarity=0.100 Sum_probs=62.0
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHh-CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC-----CCCcE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDK-ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD-----NSEGV 167 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~-~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~-----~~~~V 167 (224)
+|-+|+|-.-+-...-...++.+++.+.+ .+..|+.++. +||-.+.......-++++++.+.... ....|
T Consensus 86 ~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t----~gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~V 161 (410)
T cd01968 86 HPKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPVHS----PGFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDI 161 (410)
T ss_pred CCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEEC----CCcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcE
Confidence 45555553322111223455667777753 3788888775 35533323334444667777764311 14579
Q ss_pred EEEEE-chhHH--HHHHHHHHhcccccccceEEEEccccChHHHHHHHHhhhhccc
Q 027344 168 VLLGH-STGCQ--DIVHYMRANAACSRAVRAAIFQVLTIDFEIFVVLLIASHNLLL 220 (224)
Q Consensus 168 vLvGH-SmGG~--val~ya~~~~~~~~~V~gvIL~aPv~D~e~~~~~~~~~~n~~~ 220 (224)
.|+|. .+-+. .+.+++.+. .++-..+...-...+....+..+.=|+.+
T Consensus 162 Niig~~~~~~d~~el~~lL~~~-----Gl~v~~~~~~~~s~eei~~~~~A~lniv~ 212 (410)
T cd01968 162 NLIGEFNVAGELWGVKPLLEKL-----GIRVLASITGDSRVDEIRRAHRAKLNVVQ 212 (410)
T ss_pred EEECCCCCcccHHHHHHHHHHc-----CCeEEEEeCCCCCHHHHHhhhhCcEEEEE
Confidence 99983 22222 222333332 34433334444567777777777777765
No 384
>KOG4306 consensus Glycosylphosphatidylinositol-specific phospholipase C [Signal transduction mechanisms]
Probab=32.27 E-value=1.8e+02 Score=26.92 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=36.9
Q ss_pred EEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC
Q 027344 86 VAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS 143 (224)
Q Consensus 86 v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss 143 (224)
|.|+.+++.+-+-|+||+-....-..-+..+.++|.+.+-.|+..|+| .+||+..
T Consensus 87 i~~~~~~~D~~~~i~HGl~~~~~v~~vL~ev~~Fl~~h~eEVViL~f~---~~fg~~~ 141 (306)
T KOG4306|consen 87 IGYKLMDPDREFYICHGLFSTYPVLEVLNEVRQFLSEHPEEVVILEFR---HFFGMTE 141 (306)
T ss_pred eeeccCCCCcceEEEeeccccccHHHHHHHHHHHHHhCCCEEEEEecc---chhccCc
Confidence 555544444458889998642222344556778899889899999986 4777753
No 385
>PRK14567 triosephosphate isomerase; Provisional
Probab=32.20 E-value=2.5e+02 Score=25.10 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=56.1
Q ss_pred EEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC----CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 126 SLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD----NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 126 ~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~----~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
-|+++.-... -|-|...-+++++++..+|+....+. ...--+|+|-|....-+-.++.. ..|+|+..=+.
T Consensus 160 ivIAYEPvWA-IGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~-----~diDG~LVGga 233 (253)
T PRK14567 160 VVIAYEPVWA-IGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSL-----PDVDGGLIGGA 233 (253)
T ss_pred EEEEECCHHH-hCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcC-----CCCCEEEeehh
Confidence 4666652211 25666655677777777777654332 12347889999988888777754 47999988888
Q ss_pred ccChHHHHHHHHh
Q 027344 202 TIDFEIFVVLLIA 214 (224)
Q Consensus 202 v~D~e~~~~~~~~ 214 (224)
..|.+.+..+.+.
T Consensus 234 sL~~~~F~~Ii~~ 246 (253)
T PRK14567 234 SLKAAEFNEIINQ 246 (253)
T ss_pred hhcHHHHHHHHHH
Confidence 8898888777654
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.89 E-value=2.4e+02 Score=27.19 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=44.4
Q ss_pred HHHhCCcEEEEEcccCCCCCCCCCCh-hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEE
Q 027344 119 ALDKERWSLVQFLMTSSYTGYGTSSL-QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAI 197 (224)
Q Consensus 119 ~L~~~Gy~Vi~~Dlrss~~G~G~Ssl-~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvI 197 (224)
.+.+.+|.++.+|.. |+... ....+++..+.+. .....++||--+|-|+.+..-+..+. ..-.+.++|
T Consensus 177 ~~~~~~~DvViIDTa------Gr~~~d~~lm~El~~i~~~----~~p~e~lLVlda~~Gq~a~~~a~~F~-~~~~~~g~I 245 (429)
T TIGR01425 177 KFKKENFDIIIVDTS------GRHKQEDSLFEEMLQVAEA----IQPDNIIFVMDGSIGQAAEAQAKAFK-DSVDVGSVI 245 (429)
T ss_pred HHHhCCCCEEEEECC------CCCcchHHHHHHHHHHhhh----cCCcEEEEEeccccChhHHHHHHHHH-hccCCcEEE
Confidence 444568999999963 33322 2334444444432 23567888888998888887777761 234688888
Q ss_pred EE
Q 027344 198 FQ 199 (224)
Q Consensus 198 L~ 199 (224)
+.
T Consensus 246 lT 247 (429)
T TIGR01425 246 IT 247 (429)
T ss_pred EE
Confidence 84
No 387
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.81 E-value=3.8e+02 Score=25.32 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=57.3
Q ss_pred CCccccccccccEEEEeCCCCce---EEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhC----CcEEEEEcccCC
Q 027344 63 GPVVMGKNQFRGVLFKYGPKPVQ---VAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKE----RWSLVQFLMTSS 135 (224)
Q Consensus 63 ~p~~m~~~~~~g~l~~y~~~~~~---v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~----Gy~Vi~~Dlrss 135 (224)
.|+++..-.+.-+-+.|+...+. |.......+|-+|+|..-+-...-..-++.+++.+.++ +..|+.++.
T Consensus 50 ~~~~~~sT~l~E~dvVfGg~~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t--- 126 (429)
T cd03466 50 EPVDIASSSLNEETTVYGGEKNLKKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPAST--- 126 (429)
T ss_pred CCcccccccCCCCceEECcHHHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEEC---
Confidence 44445444455444456553111 11111122455666654332212234566778877763 678887775
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHHhh-CCCCcEEEEEEchh
Q 027344 136 YTGYGTSSLQQDAMEIDQLISYLINK-DNSEGVVLLGHSTG 175 (224)
Q Consensus 136 ~~G~G~Ssl~~~~eDL~~lIe~L~~~-~~~~~VvLvGHSmG 175 (224)
+||..+.......-++++++.+... .....|.|+|..+.
T Consensus 127 -~gF~g~~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~ 166 (429)
T cd03466 127 -PGYGGTHVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMS 166 (429)
T ss_pred -CCCcccHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCC
Confidence 4775544445555566777766532 23456999985443
No 388
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=31.78 E-value=2e+02 Score=20.77 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=48.1
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
..++|||.-|..+. ..-+|-....+.|.+.|..+..+|.. .+ .++.+.+..+..+.....|++=|.
T Consensus 7 ~~~vvvf~k~~~~~-~~Cp~C~~ak~~L~~~~i~y~~idv~------------~~-~~~~~~l~~~~g~~tvP~vfi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEE-PRCGFSRKVVQILNQLGVDFGTFDIL------------ED-EEVRQGLKEYSNWPTFPQLYVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCC-CCCcHHHHHHHHHHHcCCCeEEEEcC------------CC-HHHHHHHHHHhCCCCCCEEEECCE
Confidence 46899999886532 23456667778888888777666642 11 233333333322222345777777
Q ss_pred chhHHHHHHHHHH
Q 027344 173 STGCQDIVHYMRA 185 (224)
Q Consensus 173 SmGG~val~ya~~ 185 (224)
=.||..-+.-+.+
T Consensus 73 ~iGG~~~l~~l~~ 85 (90)
T cd03028 73 LVGGCDIVKEMHE 85 (90)
T ss_pred EEeCHHHHHHHHH
Confidence 7888877776654
No 389
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=31.44 E-value=2.8e+02 Score=22.50 Aligned_cols=90 Identities=18% Similarity=0.112 Sum_probs=40.9
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchh
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTG 175 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmG 175 (224)
++|+++|+++ .-..+++.|.+++-+-+.+--|+ + ....+..+.++.+++. ..+|..+-.-..
T Consensus 2 tylitGG~gg------lg~~la~~La~~~~~~~il~~r~---~-------~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~ 63 (181)
T PF08659_consen 2 TYLITGGLGG------LGQSLARWLAERGARRLILLGRS---G-------APSAEAEAAIRELESA--GARVEYVQCDVT 63 (181)
T ss_dssp EEEEETTTSH------HHHHHHHHHHHTT-SEEEEEESS---G-------GGSTTHHHHHHHHHHT--T-EEEEEE--TT
T ss_pred EEEEECCccH------HHHHHHHHHHHcCCCEEEEeccC---C-------CccHHHHHHHHHHHhC--CCceeeeccCcc
Confidence 5677788753 22357778877765333332221 1 1112233566666543 346777665544
Q ss_pred HHHHHHHHHHhc-ccccccceEEEEcccc
Q 027344 176 CQDIVHYMRANA-ACSRAVRAAIFQVLTI 203 (224)
Q Consensus 176 G~val~ya~~~~-~~~~~V~gvIL~aPv~ 203 (224)
-...+.-+.... ....+|+|+|-.+.+.
T Consensus 64 d~~~v~~~~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 64 DPEAVAAALAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp SHHHHHHHHHTSHTTSS-EEEEEE-----
T ss_pred CHHHHHHHHHHHHhccCCcceeeeeeeee
Confidence 444444333321 1125889998887653
No 390
>PRK10115 protease 2; Provisional
Probab=31.41 E-value=2.3e+02 Score=28.74 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=36.8
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcE----EEEEcccCCCCCCCC-CChhhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWS----LVQFLMTSSYTGYGT-SSLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~----Vi~~Dlrss~~G~G~-Ssl~~~~eDL~~lIe~L~~~ 161 (224)
.-|+++++||.-+.--...--.+++.+|.++|.. ++..|. ..|||. +......++++....+|...
T Consensus 605 ~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~---~~GHg~~~~r~~~~~~~A~~~aFl~~~ 675 (686)
T PRK10115 605 AYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDM---DSGHGGKSGRFKSYEGVAMEYAFLIAL 675 (686)
T ss_pred CCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecC---CCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3467888899876432111223577888877764 222232 247764 33444556666666666543
No 391
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=31.25 E-value=2e+02 Score=26.52 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=40.3
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhCC--cEEEEEcccCCCCCCCCC-Chhhh-------------------HHHHHHHH
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKER--WSLVQFLMTSSYTGYGTS-SLQQD-------------------AMEIDQLI 155 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~G--y~Vi~~Dlrss~~G~G~S-sl~~~-------------------~eDL~~lI 155 (224)
|+++|+|. + ...++.+++.+.... +.|+.++ ||-.. ++.+. .+-++.++
T Consensus 57 lL~YG~GS--K-r~lL~~Fa~~~l~~~~~~~~vvvn------Gy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~ 127 (326)
T PF04084_consen 57 LLFYGYGS--K-RKLLNDFAEKYLSDWGDGPVVVVN------GYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLDFII 127 (326)
T ss_pred EEEEecCh--H-HHHHHHHHHHHhhccCCCcEEEEE------ccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHHHHH
Confidence 66778874 2 456777777766552 4555554 44221 11111 22333444
Q ss_pred HHHHhhCCCCcEEEEEEchhHHH
Q 027344 156 SYLINKDNSEGVVLLGHSTGCQD 178 (224)
Q Consensus 156 e~L~~~~~~~~VvLvGHSmGG~v 178 (224)
+++.+.....+++|+=|+.=|..
T Consensus 128 ~~l~~~~~~~~l~lvIHnIDg~~ 150 (326)
T PF04084_consen 128 SYLESRPSPPPLYLVIHNIDGPS 150 (326)
T ss_pred HHHhccCCCCceEEEEECCCChh
Confidence 44543322678999999987665
No 392
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=31.14 E-value=48 Score=26.53 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=22.1
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
.++++-|+.-.+ ..-..|+.+|.++|++|+.+|+
T Consensus 2 ~v~~~kGG~GKT-t~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 2 AVTSGKGGVGKT-TIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp EEEESSTTSSHH-HHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEEcCCCCccHH-HHHHHHHhcccccccccccccc
Confidence 344444433233 3344689999999999999998
No 393
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=30.94 E-value=3.1e+02 Score=24.22 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=38.3
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhC--CcEEEEEcccCCCC-CCCCCChhhhHHHHHHHHHHHHhhC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKE--RWSLVQFLMTSSYT-GYGTSSLQQDAMEIDQLISYLINKD 162 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~--Gy~Vi~~Dlrss~~-G~G~Ssl~~~~eDL~~lIe~L~~~~ 162 (224)
.|+++-|.|.. ..-+...++.+++. ++..+-+++.+... ++| ..+.++.+.+.++++.+++..
T Consensus 91 ~pl~~qi~g~~-----~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g-~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 91 TPLIASVYGSS-----VEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGG-IAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred CcEEEEeecCC-----HHHHHHHHHHHHhccCccCEEEEECCCCCCCCCc-cccccCHHHHHHHHHHHHHhc
Confidence 46777788743 23344577777764 37777777765443 333 234455667777777777643
No 394
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=30.59 E-value=1.5e+02 Score=22.67 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=48.1
Q ss_pred hcHHHHHHHHHhCCcEEEEEcccCC-------CCCCCC--CCh-hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHH-
Q 027344 111 EYLEPLAIALDKERWSLVQFLMTSS-------YTGYGT--SSL-QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDI- 179 (224)
Q Consensus 111 ~y~~~La~~L~~~Gy~Vi~~Dlrss-------~~G~G~--Ssl-~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~va- 179 (224)
.+...++++|.++|+.|+..+-.-+ ....+- -++ .+..++..++++.+++....-||||+...-...-+
T Consensus 4 a~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 4 AASRELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 3566788999989999998763210 000000 011 12235566788888877667899999986622211
Q ss_pred HHHHHHhcccccccceEEEE
Q 027344 180 VHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 180 l~ya~~~~~~~~~V~gvIL~ 199 (224)
..+ -+.|.++|-+
T Consensus 84 ~~~-------l~~v~~~i~l 96 (115)
T PF03709_consen 84 AEV-------LGEVDGFIWL 96 (115)
T ss_dssp HHH-------HCCESEEEET
T ss_pred HHH-------HhhccEEEEe
Confidence 111 2467788777
No 395
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=30.54 E-value=2.8e+02 Score=27.12 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=53.8
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+...|+..+++.+.+.|...+.+ |. -|... -+++.++++.+++. ...+|.+=+|..-|+-...++...
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDt------aG~l~----P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAi 228 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDM------AGILT----PKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAV 228 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCC------CCCcC----HHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHH
Confidence 45566777777777777666555 42 23221 45677777777653 346799999999999888887765
Q ss_pred cccccccceEEE
Q 027344 187 AACSRAVRAAIF 198 (224)
Q Consensus 187 ~~~~~~V~gvIL 198 (224)
..+.+.|++.|.
T Consensus 229 eAGad~vD~ai~ 240 (468)
T PRK12581 229 EAGADRIDTALS 240 (468)
T ss_pred HcCCCEEEeecc
Confidence 445667777665
No 396
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=30.53 E-value=4e+02 Score=23.91 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=40.1
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC----CCCCCCChhhhHHHHHHHHHHHHhhCC
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY----TGYGTSSLQQDAMEIDQLISYLINKDN 163 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~----~G~G~Ssl~~~~eDL~~lIe~L~~~~~ 163 (224)
..|.++-+.|-. ...+...++.+.+.|+..+-+++.+.. ..+|.+.+.+..+-+.++++.+++..+
T Consensus 62 ~~p~i~ql~g~~-----~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~ 131 (319)
T TIGR00737 62 ETPISVQLFGSD-----PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD 131 (319)
T ss_pred cceEEEEEeCCC-----HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC
Confidence 457777787742 234556777777789998888775432 123333444455566666776665443
No 397
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=30.45 E-value=1.7e+02 Score=27.70 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=43.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhC--CcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh-CCCCcEEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKE--RWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK-DNSEGVVLL 170 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~--Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~-~~~~~VvLv 170 (224)
+|-+|+|..-+-...-..-++.+++.+.++ |..|+.+.- +||..+.......-++++++.+.++ .....|+|+
T Consensus 97 ~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t----~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~Vnii 172 (427)
T PRK02842 97 NISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNYSG----SGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLV 172 (427)
T ss_pred CCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEeeC----CCccccHHHHHHHHHHHHhhhcccccCCCCcEEEE
Confidence 566677655332112234456777777766 778887654 4663322333333366666665432 234568999
Q ss_pred EEchhH
Q 027344 171 GHSTGC 176 (224)
Q Consensus 171 GHSmGG 176 (224)
|.---+
T Consensus 173 G~~~~~ 178 (427)
T PRK02842 173 GSLADV 178 (427)
T ss_pred EeCCcc
Confidence 965543
No 398
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=30.25 E-value=3.4e+02 Score=28.65 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=57.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
..++|+|.|-.++..-.++-.++|+.|. .-|.++.+|-+ ..++. .....+-|++..+ |.++++.+-+.|.|+.
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~-a~~~av~v~~~---~~~~~--~~~~~~~l~~~~~-Lae~lGae~~~l~~~d 321 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLH-AKWTAVYVETP---ELHRL--SEKEARRLHENLR-LAEELGAEIVTLYGGD 321 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhC-CCeEEEEEecc---ccccc--cHHHHHHHHHHHH-HHHHhCCeEEEEeCCc
Confidence 3477888887665544667778888876 57888888752 11221 1233444555444 3345678888899988
Q ss_pred hhHHHHHHHHHHhcccccccceEEE
Q 027344 174 TGCQDIVHYMRANAACSRAVRAAIF 198 (224)
Q Consensus 174 mGG~val~ya~~~~~~~~~V~gvIL 198 (224)
-.-.+ +.|++.+ ++..+|+
T Consensus 322 v~~~i-~~ya~~~-----~~TkiVi 340 (890)
T COG2205 322 VAKAI-ARYAREH-----NATKIVI 340 (890)
T ss_pred HHHHH-HHHHHHc-----CCeeEEe
Confidence 87774 4666664 5555554
No 399
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.23 E-value=75 Score=28.18 Aligned_cols=37 Identities=27% Similarity=0.147 Sum_probs=28.5
Q ss_pred EEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEccc
Q 027344 97 VIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlr 133 (224)
+|.|-|.-+|.-.+.....|+-.|.+.|.+|+++|+.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5666566555545566778999999999999999993
No 400
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=30.02 E-value=2.2e+02 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHhCCcEEEEEcccCCCC------CCCC------CChhhhHHHHHHHHHHHHhhCC
Q 027344 115 PLAIALDKERWSLVQFLMTSSYT------GYGT------SSLQQDAMEIDQLISYLINKDN 163 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~------G~G~------Ssl~~~~eDL~~lIe~L~~~~~ 163 (224)
.+++.|.++|++|+..|.+.... ..+. .++ .+.+++.++++.+.++.+
T Consensus 25 a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 25 GMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADL-RKIDGIPALLERAVAEFG 84 (253)
T ss_pred HHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCC-CCHHHHHHHHHHHHHHhC
Confidence 47888888999999887532100 0010 011 235667777777766544
No 401
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.98 E-value=1.5e+02 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=27.0
Q ss_pred CceEEEECCCCC-CC--CChhcHHHHHHHHHhCCcEEEEE
Q 027344 94 QQQVIFIGGLTD-GF--FATEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 94 ~~~IVfVHGlg~-~~--~~~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
++.|+|.||-.. .. .....|..+++.|.++|+.|+.+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~ 214 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLF 214 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 578888888322 22 23557888999999999888864
No 402
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=29.92 E-value=1.1e+02 Score=23.48 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=25.9
Q ss_pred HHHHHHHHh-CCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 114 EPLAIALDK-ERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 114 ~~La~~L~~-~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
+...+.+.+ ..+.++.+.. +........++++.+++..+..+|++-|
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~-----------~~~~~~~~~~~~~~ik~~~p~~~iv~GG 75 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISL-----------MTSAIYEALELAKIAKEVLPNVIVVVGG 75 (127)
T ss_pred HHHHHHHHHhcCCCEEEEee-----------ccccHHHHHHHHHHHHHHCCCCEEEECC
Confidence 445555554 5777776632 1112335677777777765544455443
No 403
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=29.68 E-value=1.6e+02 Score=28.67 Aligned_cols=39 Identities=3% Similarity=0.060 Sum_probs=24.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
+.+||+++-+...-...+....-.+.|.+.|+.|+-++.
T Consensus 180 ~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~ 218 (475)
T PRK13982 180 NRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNA 218 (475)
T ss_pred CCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCC
Confidence 456777777654322223344556778889999997765
No 404
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=29.59 E-value=2.4e+02 Score=20.93 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred HHHhCCcEEEEEcccCCCCCCCC-CChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 027344 119 ALDKERWSLVQFLMTSSYTGYGT-SSLQQDAMEIDQLISYLINKDNSEGVVLLGHS 173 (224)
Q Consensus 119 ~L~~~Gy~Vi~~Dlrss~~G~G~-Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS 173 (224)
......+.++.+.+...-...+. .......++++++++.+++..+..+|++++.-
T Consensus 60 ~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~ 115 (187)
T cd00229 60 ALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPP 115 (187)
T ss_pred hhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 33445677777765221111111 24456778888999988875667778887765
No 405
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.40 E-value=4.2e+02 Score=23.75 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=62.4
Q ss_pred HHHHHHHhCCc---EEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC-C--CCcEEEEEEchhHHHHHHHHHHhcc
Q 027344 115 PLAIALDKERW---SLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD-N--SEGVVLLGHSTGCQDIVHYMRANAA 188 (224)
Q Consensus 115 ~La~~L~~~Gy---~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~-~--~~~VvLvGHSmGG~val~ya~~~~~ 188 (224)
++...|..-+- .|+++.-... -|-|.+--..+++++.+.|+....+. + .+-.+|+|-|.=-.-+.+++.+
T Consensus 147 Ql~~~l~~l~~~~~~vIAYEPvWA-IGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~--- 222 (251)
T COG0149 147 QLAAALAALSPEANIVIAYEPVWA-IGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQ--- 222 (251)
T ss_pred HHHHHHhhcCcccCeEEEECCHHH-hcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcC---
Confidence 34444443332 6777753211 26788777888999998888776542 1 3558999999888888888765
Q ss_pred cccccceEEEEccccChHHHHHHHH
Q 027344 189 CSRAVRAAIFQVLTIDFEIFVVLLI 213 (224)
Q Consensus 189 ~~~~V~gvIL~aPv~D~e~~~~~~~ 213 (224)
..|+|+.+=+...+.+.+..+..
T Consensus 223 --~~idG~LVGgAslka~~f~~ii~ 245 (251)
T COG0149 223 --PDIDGALVGGASLKADDFLAILE 245 (251)
T ss_pred --CCCCeEEEcceeecchhHHHHHH
Confidence 48999887777777655555443
No 406
>PRK04435 hypothetical protein; Provisional
Probab=29.26 E-value=99 Score=24.99 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=47.1
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCCh----hhhHHHHHHHHHHHHhhCCCCcEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSL----QQDAMEIDQLISYLINKDNSEGVV 168 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl----~~~~eDL~~lIe~L~~~~~~~~Vv 168 (224)
.+.+-|.++... ....+..+...+.+.|..+..+++.....|...-.+ .+...++.++++.|++..+..+|-
T Consensus 67 ~r~vtL~i~l~D----r~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~ 142 (147)
T PRK04435 67 GKIITLSLLLED----RSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVE 142 (147)
T ss_pred CcEEEEEEEEec----CCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEE
Confidence 344545554432 123566788889999999998876322222221111 222348999999998766777888
Q ss_pred EEEE
Q 027344 169 LLGH 172 (224)
Q Consensus 169 LvGH 172 (224)
++|.
T Consensus 143 i~~~ 146 (147)
T PRK04435 143 LIGM 146 (147)
T ss_pred EEec
Confidence 8874
No 407
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=29.11 E-value=1.3e+02 Score=24.37 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
.++++++++.+.+ .++|+++|...-+.++.++..+.
T Consensus 17 ~~~~~~~~~~l~~---a~~I~i~G~G~S~~~A~~~~~~l 52 (179)
T TIGR03127 17 EEELDKLADKIIK---AKRIFVAGAGRSGLVGKAFAMRL 52 (179)
T ss_pred HHHHHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHH
Confidence 5677888887764 56899999987777666666553
No 408
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=29.04 E-value=1e+02 Score=25.71 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=25.1
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
+.+|+++.-+...-...+...+-.+.|.+.|+.|+-++.
T Consensus 112 ~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 112 ETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 456677766543322234455667788889999987754
No 409
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=28.97 E-value=2.1e+02 Score=26.42 Aligned_cols=64 Identities=6% Similarity=0.074 Sum_probs=38.8
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++|.|- +.....+++.+.+.|.+.|..+..+|- -. -+...++++++++.+++. +.+-|+-+|
T Consensus 31 r~lvvt~~--~~~~~g~~~~v~~~L~~~~i~~~~~~~------v~---~~p~~~~v~~~~~~~~~~-~~D~IiaiG 94 (379)
T TIGR02638 31 KALVVTDK--DLIKFGVADKVTDLLDEAGIAYELFDE------VK---PNPTITVVKAGVAAFKAS-GADYLIAIG 94 (379)
T ss_pred EEEEEcCc--chhhccchHHHHHHHHHCCCeEEEECC------CC---CCcCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 45556552 222334778888999988988877651 11 123367777777777653 445555564
No 410
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=28.96 E-value=2.7e+02 Score=22.74 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=16.8
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcc
Q 027344 110 TEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
..+-+.+.++|+++||.|+ |+
T Consensus 10 ~~lK~~l~~~L~~~g~eV~--D~ 30 (144)
T TIGR00689 10 LELKSEIIEHLKQKGHEVI--DC 30 (144)
T ss_pred HHHHHHHHHHHHHCCCEEE--Ec
Confidence 4566678999999999986 55
No 411
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=28.88 E-value=83 Score=27.11 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=22.0
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
...=|||.|.|.+. . +..|.++||.|+.+|+
T Consensus 37 ~~~rvLvPgCG~g~---D-----~~~La~~G~~VvGvDl 67 (218)
T PF05724_consen 37 PGGRVLVPGCGKGY---D-----MLWLAEQGHDVVGVDL 67 (218)
T ss_dssp TSEEEEETTTTTSC---H-----HHHHHHTTEEEEEEES
T ss_pred CCCeEEEeCCCChH---H-----HHHHHHCCCeEEEEec
Confidence 34568889987542 1 2345578999999998
No 412
>PRK06179 short chain dehydrogenase; Provisional
Probab=28.83 E-value=3.5e+02 Score=22.74 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=28.7
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCC--CCCCChh---hhHHHHHHHHHHHHhhCC
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTG--YGTSSLQ---QDAMEIDQLISYLINKDN 163 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G--~G~Ssl~---~~~eDL~~lIe~L~~~~~ 163 (224)
.+++.|.++|+.|+..+.+..... .+...+. .+.++++++++.+.++.+
T Consensus 19 ~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 19 ATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred HHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 578888889999998875311100 0111111 245677788887766554
No 413
>PTZ00062 glutaredoxin; Provisional
Probab=28.48 E-value=3.2e+02 Score=23.46 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=50.4
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGH 172 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGH 172 (224)
..+++||.-|-... -.-+|-..+.+.|.+.|.....+|.. ++ +++++.+..+........|++=|-
T Consensus 112 ~~~Vvvf~Kg~~~~-p~C~~C~~~k~~L~~~~i~y~~~DI~------------~d-~~~~~~l~~~sg~~TvPqVfI~G~ 177 (204)
T PTZ00062 112 NHKILLFMKGSKTF-PFCRFSNAVVNMLNSSGVKYETYNIF------------ED-PDLREELKVYSNWPTYPQLYVNGE 177 (204)
T ss_pred cCCEEEEEccCCCC-CCChhHHHHHHHHHHcCCCEEEEEcC------------CC-HHHHHHHHHHhCCCCCCeEEECCE
Confidence 46899999995421 12356667778888888777666651 11 234444444332223346788888
Q ss_pred chhHHHHHHHHHHh
Q 027344 173 STGCQDIVHYMRAN 186 (224)
Q Consensus 173 SmGG~val~ya~~~ 186 (224)
-.||...+.-+.+.
T Consensus 178 ~IGG~d~l~~l~~~ 191 (204)
T PTZ00062 178 LIGGHDIIKELYES 191 (204)
T ss_pred EEcChHHHHHHHHc
Confidence 89999888876653
No 414
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.48 E-value=1.4e+02 Score=22.33 Aligned_cols=19 Identities=16% Similarity=-0.065 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCcEEEEEcc
Q 027344 114 EPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 114 ~~La~~L~~~Gy~Vi~~Dl 132 (224)
..+.++|.++|..++.+--
T Consensus 20 ~e~l~~L~~~g~~~~~lTN 38 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTN 38 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeC
Confidence 3466677788888877643
No 415
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=28.43 E-value=83 Score=28.84 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=23.7
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
+.+||+++... .+..+.++-.|+++||.|+..-
T Consensus 3 ~evVvI~Gs~~-----~PltR~la~DLeRRGFIV~v~~ 35 (299)
T PF08643_consen 3 KEVVVIAGSPH-----DPLTRSLALDLERRGFIVYVTV 35 (299)
T ss_pred eeEEEEECCCC-----CccHHHHHHHHhhCCeEEEEEe
Confidence 34555555443 3677789999999999998764
No 416
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.36 E-value=1.6e+02 Score=27.48 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=43.1
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHH-hCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHh-hCCCCcEEEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALD-KERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLIN-KDNSEGVVLLG 171 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~-~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~-~~~~~~VvLvG 171 (224)
+|.+|+|..-+-...-..-++.+++.+. +.|..|+.+.- +||..+.......-++++++.+.+ +.....|.|+|
T Consensus 87 ~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v~t----~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG 162 (396)
T cd01979 87 NPSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVASA----SGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVG 162 (396)
T ss_pred CCCEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEeeC----CCccccHHHHHHHHHHHHhhhcccccCCCCceEEEE
Confidence 5667777664322122344566777665 34788888764 355432233333445566665533 22345789999
Q ss_pred Echh
Q 027344 172 HSTG 175 (224)
Q Consensus 172 HSmG 175 (224)
.-.-
T Consensus 163 ~~~~ 166 (396)
T cd01979 163 SLPD 166 (396)
T ss_pred eCCc
Confidence 7543
No 417
>PRK14566 triosephosphate isomerase; Provisional
Probab=28.13 E-value=2.6e+02 Score=25.03 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=54.9
Q ss_pred EEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCC----CCcEEEEEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 126 SLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDN----SEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 126 ~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~----~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
-|+++.--.. .|-|+..-+++++++...|+....+.+ .+--+|+|-|..-.-+..++.. +.|+|+..=+.
T Consensus 170 ivIAYEPvWA-IGTG~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~-----~dIDG~LVGgA 243 (260)
T PRK14566 170 AIIAYEPLWA-VGTGKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQ-----PDVDGGLIGGA 243 (260)
T ss_pred EEEEECcHHh-cCCCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcC-----CCCCeEEechH
Confidence 3566652111 255776666777777777775443221 1236888888888888777654 47999987777
Q ss_pred ccChHHHHHHHHhh
Q 027344 202 TIDFEIFVVLLIAS 215 (224)
Q Consensus 202 v~D~e~~~~~~~~~ 215 (224)
-.|.+.+..+.+..
T Consensus 244 SL~~~~F~~Ii~~~ 257 (260)
T PRK14566 244 SLNSTEFLSLCTIA 257 (260)
T ss_pred hcCHHHHHHHHHHh
Confidence 78888777766543
No 418
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=28.08 E-value=3.3e+02 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=22.4
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEccc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlr 133 (224)
+..|++.+|-| +. . ..+++.|.++||.|+.+|.+
T Consensus 21 ~~~IlVtGgtG--fI-G---~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 21 KLRICITGAGG--FI-A---SHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCEEEEECCcc--HH-H---HHHHHHHHhCCCEEEEEEec
Confidence 44566666533 11 1 24788888899999999853
No 419
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=27.92 E-value=3.9e+02 Score=22.89 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=24.4
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
++++++|++.+-. ..+...+++.|.++|+.|..+..
T Consensus 2 il~~~~~~~~gG~-~~~~~~l~~~L~~~g~~v~v~~~ 37 (360)
T cd04951 2 ILYVITGLGLGGA-EKQVVDLADQFVAKGHQVAIISL 37 (360)
T ss_pred eEEEecCCCCCCH-HHHHHHHHHhcccCCceEEEEEE
Confidence 4555676653222 35566799999999999987754
No 420
>PRK07890 short chain dehydrogenase; Provisional
Probab=27.88 E-value=3.2e+02 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=15.1
Q ss_pred HHHHHHHhCCcEEEEEcc
Q 027344 115 PLAIALDKERWSLVQFLM 132 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dl 132 (224)
.+++.|.++|+.|+..+.
T Consensus 20 ~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 20 TLAVRAARAGADVVLAAR 37 (258)
T ss_pred HHHHHHHHcCCEEEEEeC
Confidence 578888899999998874
No 421
>COG4425 Predicted membrane protein [Function unknown]
Probab=27.85 E-value=1.8e+02 Score=28.70 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=27.9
Q ss_pred CCcEEEEEEchhHHHHHH-HHHHhcccccccceEEEEccccChH
Q 027344 164 SEGVVLLGHSTGCQDIVH-YMRANAACSRAVRAAIFQVLTIDFE 206 (224)
Q Consensus 164 ~~~VvLvGHSmGG~val~-ya~~~~~~~~~V~gvIL~aPv~D~e 206 (224)
..|++|.|-|+|++-..+ +..-+ .--...+|+.+.+|+....
T Consensus 396 RPKLylhG~SLGa~~s~~~s~dl~-dvl~dfdGaLwSGppf~s~ 438 (588)
T COG4425 396 RPKLYLHGESLGAMGSEAPSMDLF-DVLGDFDGALWSGPPFNST 438 (588)
T ss_pred CCceEEeccccccccCccccccHH-HHHhhcccceecCCCCCcH
Confidence 457999999999876555 33322 1123488999999875433
No 422
>PLN02884 6-phosphofructokinase
Probab=27.57 E-value=2.3e+02 Score=27.05 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=30.1
Q ss_pred eEEEeeCCCCceEEEECCCCCCCCChhcHHHHHHHHHhCCc-EEEEEcc
Q 027344 85 QVAFKTGDYQQQVIFIGGLTDGFFATEYLEPLAIALDKERW-SLVQFLM 132 (224)
Q Consensus 85 ~v~y~~g~~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy-~Vi~~Dl 132 (224)
.|||.....+-.||..+|...+.. .-...+++.+...|+ .|+.+..
T Consensus 46 ~~~~~p~~~rIaIltsGGdaPGmN--a~Iravv~~a~~~g~~~V~Gi~~ 92 (411)
T PLN02884 46 KIYFEPEEVKAAIVTCGGLCPGLN--DVIRQIVFTLEIYGVKNIVGIPF 92 (411)
T ss_pred eEEeCCcceEEEEEcCCCCCccHh--HHHHHHHHHHHHcCCcEEEEEcc
Confidence 577766655666777788776542 344556666666798 6887753
No 423
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=27.56 E-value=2.5e+02 Score=25.87 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=38.8
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
-+++|.|- +.....+++++.+.|.+.|..+..+|- ... +...+++.++++.+++. +.+-|+-+|
T Consensus 25 r~livt~~--~~~~~g~~~~v~~~L~~~gi~~~~~~~------v~~---~p~~~~v~~~~~~~~~~-~~D~IIaiG 88 (375)
T cd08194 25 RPLIVTDK--VMVKLGLVDKLTDSLKKEGIESAIFDD------VVS---EPTDESVEEGVKLAKEG-GCDVIIALG 88 (375)
T ss_pred eEEEEcCc--chhhcchHHHHHHHHHHCCCeEEEECC------CCC---CcCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 34555552 222344778899999988988877752 111 22367777777777653 445566565
No 424
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=27.54 E-value=1.8e+02 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=23.5
Q ss_pred ChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 143 SLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 143 sl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
+.++..++++.+++.++++.+..+|+|++
T Consensus 107 ~~~~~~~~l~~ii~~l~~~~P~~~Iil~~ 135 (214)
T cd01820 107 TAEEIAEGILAIVEEIREKLPNAKILLLG 135 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 45667888999999998877777888887
No 425
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.45 E-value=2.9e+02 Score=24.24 Aligned_cols=66 Identities=11% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCcEEEEEcccCCCCCCCCCC---h-hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 114 EPLAIALDKERWSLVQFLMTSSYTGYGTSS---L-QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 114 ~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss---l-~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+.+.++|++.|+.|+.+. ++|..+ + .-+.+++.++++.+. .-+.+-|++.|-.|-+..++.-+.+.
T Consensus 135 ~~~~~~l~~~G~eV~~~~------~~~~~~~~~ia~i~p~~i~~~~~~~~-~~~aDAifisCTnLrt~~vi~~lE~~ 204 (239)
T TIGR02990 135 RPMAQYFAVRGFEIVNFT------CLGLTDDREMARISPDCIVEAALAAF-DPDADALFLSCTALRAATCAQRIEQA 204 (239)
T ss_pred HHHHHHHHhCCcEEeeee------ccCCCCCceeeecCHHHHHHHHHHhc-CCCCCEEEEeCCCchhHHHHHHHHHH
Confidence 356678889999998763 344422 1 123455666665553 23456799999999999998888764
No 426
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=27.40 E-value=81 Score=26.18 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEch
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHST 174 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSm 174 (224)
.+.+.+.+-||.|+...-. .-+.++++.++++ .+-++|+|+|=
T Consensus 3 ~~~~~y~~~gy~v~~~S~~-------------~~~g~~~l~~~l~----~k~~vl~G~SG 45 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAK-------------TGEGIEELKELLK----GKTSVLLGQSG 45 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTT-------------TTTTHHHHHHHHT----TSEEEEECSTT
T ss_pred HHHHHHHHcCCcEEEEeCC-------------CCcCHHHHHHHhc----CCEEEEECCCC
Confidence 3455667789999987531 1122444444443 46789999983
No 427
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.39 E-value=2.7e+02 Score=25.93 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=39.3
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++|.|- +.....+++++.+.|+++|..+..+|- .. -+-..+++++.++.+++. +.+-|+-+|
T Consensus 33 ~~livt~~--~~~~~g~~~~v~~~L~~~~i~~~~f~~--------v~-~np~~~~v~~~~~~~~~~-~~D~IiaiG 96 (383)
T PRK09860 33 RTLIVTDN--MLTKLGMAGDVQKALEERNIFSVIYDG--------TQ-PNPTTENVAAGLKLLKEN-NCDSVISLG 96 (383)
T ss_pred EEEEEcCc--chhhCccHHHHHHHHHHcCCeEEEeCC--------CC-CCcCHHHHHHHHHHHHHc-CCCEEEEeC
Confidence 45556551 223345778899999988988777651 11 123467777777777653 445555566
No 428
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.34 E-value=2.9e+02 Score=23.16 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHHhCCcEEEEEccc
Q 027344 115 PLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlr 133 (224)
.+++.|.++|++|+..+.+
T Consensus 23 ~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 23 RIAIGLAQAGADVALFDLR 41 (254)
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 5788888899999988753
No 429
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=27.34 E-value=2.6e+02 Score=23.55 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=15.8
Q ss_pred hhcHHHHHHHHHhCCcEEE
Q 027344 110 TEYLEPLAIALDKERWSLV 128 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi 128 (224)
..+-+.|.++|.++||.|+
T Consensus 12 ~~lK~~l~~~L~~~G~eV~ 30 (171)
T TIGR01119 12 TDVKMEVSEFLKSKGYEVL 30 (171)
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 4566678999999999986
No 430
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.21 E-value=2.7e+02 Score=26.12 Aligned_cols=65 Identities=9% Similarity=0.149 Sum_probs=40.0
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
..++++.| .+.....+++++.+.|+++|..+..+|- ... +-..+++++.++.+++ .+.+-|+-||
T Consensus 50 ~~~lvv~~--~~~~~~g~~~~v~~~L~~~gi~~~~~~~------v~~---~P~~~~v~~~~~~~r~-~~~D~IiavG 114 (395)
T PRK15454 50 KHLFVMAD--SFLHQAGMTAGLTRSLAVKGIAMTLWPC------PVG---EPCITDVCAAVAQLRE-SGCDGVIAFG 114 (395)
T ss_pred CEEEEEcC--cchhhCccHHHHHHHHHHcCCeEEEECC------CCC---CcCHHHHHHHHHHHHh-cCcCEEEEeC
Confidence 34555544 1233356778899999999988877751 111 2235667777777765 3455566665
No 431
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=27.17 E-value=1.6e+02 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=14.8
Q ss_pred cHHHHHHHHHhCCcEEEEEccc
Q 027344 112 YLEPLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 112 y~~~La~~L~~~Gy~Vi~~Dlr 133 (224)
|++.+.+.|.+.|+.|..+|+.
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~ 22 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLS 22 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCT
T ss_pred CHHHHHHHHHHCCCEEEEEecc
Confidence 4566677777888887777763
No 432
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=27.14 E-value=3e+02 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=16.2
Q ss_pred hhcHHHHHHHHHhCCcEEEEE
Q 027344 110 TEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
...-+.+.++|+++||.|+-+
T Consensus 11 ~~lK~~i~~~L~~~g~eV~D~ 31 (140)
T PF02502_consen 11 FELKEAIKEYLEEKGYEVIDF 31 (140)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEe
Confidence 345567889999999998743
No 433
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=27.09 E-value=2.6e+02 Score=25.63 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=38.7
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++|.|- +.....+++++.+.|.+.|+.+..+|- ... ....+++.++++.+++. +.+-|+-||
T Consensus 26 ~~liv~~~--~~~~~~~~~~v~~~L~~~g~~~~~~~~------v~~---~p~~~~v~~~~~~~~~~-~~d~IIaiG 89 (370)
T cd08192 26 RPLIVTDP--GLAALGLVARVLALLEDAGLAAALFDE------VPP---NPTEAAVEAGLAAYRAG-GCDGVIAFG 89 (370)
T ss_pred eEEEEcCc--chhhCccHHHHHHHHHHcCCeEEEeCC------CCC---CCCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 45555552 223344678899999988998877752 111 23356777777777653 345555565
No 434
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=26.97 E-value=1.3e+02 Score=24.74 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=24.4
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
..+|.|-+..++.-.+.....|+.+|+++|++|+.+|.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 44444433333322233455789999999999999986
No 435
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=26.96 E-value=2.1e+02 Score=26.43 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=33.9
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
..+++.+.+.|.+.|+.+..+|- .-. +...++++++++.+++. +.+-|+-+|
T Consensus 38 ~g~~~~v~~~L~~~g~~~~~~~~------v~~---~p~~~~v~~~~~~~~~~-~~D~IIavG 89 (375)
T cd08179 38 FGFLDKVEAYLKEAGIEVEVFEG------VEP---DPSVETVLKGAEAMREF-EPDWIIALG 89 (375)
T ss_pred CChHHHHHHHHHHcCCeEEEeCC------CCC---CcCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 45778899999988998887752 111 23466677777777653 345566565
No 436
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=26.92 E-value=3.1e+02 Score=23.49 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCcEEEEEc
Q 027344 114 EPLAIALDKERWSLVQFL 131 (224)
Q Consensus 114 ~~La~~L~~~Gy~Vi~~D 131 (224)
+.|++.|+++|+.|+.-+
T Consensus 37 ~~L~~~Le~~Gi~vihd~ 54 (196)
T TIGR02867 37 DRLAKELEEKGIGVIHDK 54 (196)
T ss_pred HHHHHHHHHCCCeEEEeC
Confidence 468889999999998754
No 437
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=26.86 E-value=2.7e+02 Score=25.40 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=38.5
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCC--hhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSS--LQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ss--l~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
+..|+++++- . .-..++.++.+.||.|+.+|.....+++-..+ +.-+..|.+++++.+++ .+ -.+++.+
T Consensus 12 ~~~ilIiG~g---~----~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~-~~-id~vi~~ 82 (395)
T PRK09288 12 ATRVMLLGSG---E----LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIER-EK-PDYIVPE 82 (395)
T ss_pred CCEEEEECCC---H----HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHH-hC-CCEEEEe
Confidence 3467777652 1 22345667778899999998642222221111 11123455566665543 22 3467777
Q ss_pred Echh
Q 027344 172 HSTG 175 (224)
Q Consensus 172 HSmG 175 (224)
....
T Consensus 83 ~e~~ 86 (395)
T PRK09288 83 IEAI 86 (395)
T ss_pred eCcC
Confidence 6543
No 438
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=26.49 E-value=2.6e+02 Score=25.54 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=40.6
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC-----CCCCCCChhhhHHHHHHHHHHHHhh
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY-----TGYGTSSLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-----~G~G~Ssl~~~~eDL~~lIe~L~~~ 161 (224)
..|.++-|.|-- ...+...++.+.+.||..+-+++.+.. .|+| +.+.++.+-+.++++.+++.
T Consensus 54 e~p~~vQl~g~~-----p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~G-s~Ll~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 54 ESPVALQLGGSD-----PNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFG-ACLMGNADLVADCVKAMQEA 121 (318)
T ss_pred CCcEEEEEccCC-----HHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCee-hHhhcCHHHHHHHHHHHHHH
Confidence 567888888842 234555677777789999988885432 2344 34555566677777777654
No 439
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.47 E-value=3e+02 Score=22.79 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=30.6
Q ss_pred HHHHHHHhCCcEEEEEcccCCCC---------CCC-CC-Chh---hhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 115 PLAIALDKERWSLVQFLMTSSYT---------GYG-TS-SLQ---QDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~---------G~G-~S-sl~---~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
.+++.|.++|+.|+.++.+.... ..+ .- .+. .+.+++.++++.+.++.+.-.+++
T Consensus 17 ~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 85 (256)
T PRK12745 17 GIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLV 85 (256)
T ss_pred HHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 47888888999999987532100 011 10 011 135667777887776554333443
No 440
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=26.39 E-value=2.1e+02 Score=26.56 Aligned_cols=33 Identities=24% Similarity=0.084 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHH
Q 027344 145 QQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQ 177 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~ 177 (224)
.+..+++.+.|+...++.+.-.-|++=|||||.
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GG 101 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGGG 101 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCCC
Confidence 355677777777777665555568889999874
No 441
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=26.36 E-value=2.1e+02 Score=26.63 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=39.7
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCC--CCCCC--C----hh---hhHHHHHHHHHHHHhhC
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYT--GYGTS--S----LQ---QDAMEIDQLISYLINKD 162 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~--G~G~S--s----l~---~~~eDL~~lIe~L~~~~ 162 (224)
..-.|||-|.-. .+=..||..|.++||+|++=-+-..+. -.|.. . +. ..-+.|+++.+++++..
T Consensus 28 ~~k~VlITGCDS-----GfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 28 SDKAVLITGCDS-----GFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred CCcEEEEecCCc-----HHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 456788888432 233468999999999999854422110 01111 1 10 12467888888887755
Q ss_pred CCCc
Q 027344 163 NSEG 166 (224)
Q Consensus 163 ~~~~ 166 (224)
+.+.
T Consensus 103 ~~~g 106 (322)
T KOG1610|consen 103 GEDG 106 (322)
T ss_pred cccc
Confidence 5444
No 442
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=26.29 E-value=64 Score=28.23 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=21.1
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEccc
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlr 133 (224)
.=|||.|.|.+. -+..|+++||.|+.+|+.
T Consensus 45 ~rvLvPgCGkg~--------D~~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 45 SVCLIPMCGCSI--------DMLFFLSKGVKVIGIELS 74 (226)
T ss_pred CeEEEeCCCChH--------HHHHHHhCCCcEEEEecC
Confidence 356788877532 234566799999999983
No 443
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=26.29 E-value=2.7e+02 Score=25.69 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=38.3
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++|.|- +.....+++++.+.|.+.|..+..+|- ... +...++++++++.+++. +.+-|+-+|
T Consensus 28 ~~lvvt~~--~~~~~g~~~~v~~~L~~~g~~~~~~~~------v~~---~p~~~~v~~~~~~~~~~-~~d~IIaiG 91 (374)
T cd08189 28 KVLIVTDK--GLVKLGLLDKVLEALEGAGIEYAVYDG------VPP---DPTIENVEAGLALYREN-GCDAILAVG 91 (374)
T ss_pred eEEEEeCc--chhhcccHHHHHHHHHhcCCeEEEeCC------CCC---CcCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 45566552 222234667888899888988877752 111 23466677777777653 344455565
No 444
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.27 E-value=3.2e+02 Score=23.08 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhC-CcEEEEEcccCC--------------CCCCCCCChhhhHHHHHH--HH
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKE-RWSLVQFLMTSS--------------YTGYGTSSLQQDAMEIDQ--LI 155 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~-Gy~Vi~~Dlrss--------------~~G~G~Ssl~~~~eDL~~--lI 155 (224)
.++.|+||.=..+ ....|...+.++|.+. |+.+..++.... -+| | +.....+.+++ +.
T Consensus 30 ~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~G-G--~~~~~~~~l~~~~l~ 104 (212)
T cd03146 30 ARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGG-G--NTFNLLAQWREHGLD 104 (212)
T ss_pred CCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECC-c--hHHHHHHHHHHcCHH
Confidence 4567888876554 3346777788889889 999988764210 012 2 11222222222 12
Q ss_pred HHHHhhCCCCcEEEEEEchhHHHHHHH
Q 027344 156 SYLINKDNSEGVVLLGHSTGCQDIVHY 182 (224)
Q Consensus 156 e~L~~~~~~~~VvLvGHSmGG~val~y 182 (224)
+.|++.. .+..+++|-|.|.++....
T Consensus 105 ~~l~~~~-~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 105 AILKAAL-ERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHH-HCCCEEEEECHhHHhhCCC
Confidence 2222211 2358999999999998874
No 445
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=26.23 E-value=3.4e+02 Score=27.26 Aligned_cols=80 Identities=19% Similarity=0.100 Sum_probs=55.0
Q ss_pred CChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 108 FATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 108 ~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
+...|+..+++.+.+.|...+.+ |. .|.. .-+++.++++.++++.+ .+|-+=+|..-|+-...++...
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~Dt------~G~l----~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAi 220 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKDM------AGLL----KPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAI 220 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC------CCCc----CHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHH
Confidence 45567777888887777766655 43 2322 24567777888877664 6799999999999888887765
Q ss_pred cccccccceEEE
Q 027344 187 AACSRAVRAAIF 198 (224)
Q Consensus 187 ~~~~~~V~gvIL 198 (224)
..+.+.|++.|.
T Consensus 221 eAGa~~vD~ai~ 232 (593)
T PRK14040 221 EAGIDGVDTAIS 232 (593)
T ss_pred HcCCCEEEeccc
Confidence 345566666554
No 446
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=26.17 E-value=4.7e+02 Score=24.07 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=24.1
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEc
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFL 131 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~D 131 (224)
..|+|..|-..+.........+.+-|.+.|+.|+.+.
T Consensus 162 ~~V~~f~gC~~~~~~~~~~~a~v~vL~~~G~~v~~~~ 198 (397)
T TIGR03379 162 RQVAYFHGCYVNYNHPQLGKDLVKVLNAMNIGVQLLE 198 (397)
T ss_pred CcEEEeCCcccccCChHHHHHHHHHHHHCCcEEEeCC
Confidence 4566666643333334455667778899999998764
No 447
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=26.14 E-value=1.9e+02 Score=21.15 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=32.1
Q ss_pred EEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhh
Q 027344 98 IFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINK 161 (224)
Q Consensus 98 VfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~ 161 (224)
|++||-.+.-. +...+.+++.+ ++.++.+|... .......+..+.+..+++.+.+.
T Consensus 1 ill~G~~G~GK-T~l~~~la~~l---~~~~~~i~~~~----~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGK-TTLARALAQYL---GFPFIEIDGSE----LISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSH-HHHHHHHHHHT---TSEEEEEETTH----HHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCe-eHHHHHHHhhc---ccccccccccc----ccccccccccccccccccccccc
Confidence 56778654322 34555566644 68888887531 11112344566777777777653
No 448
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=26.07 E-value=68 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEchhHH
Q 027344 150 EIDQLISYLINKDNSEGVVLLGHSTGCQ 177 (224)
Q Consensus 150 DL~~lIe~L~~~~~~~~VvLvGHSmGG~ 177 (224)
++...+++.....+.+.|+++||+=-|.
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~ 71 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGA 71 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcH
Confidence 3555555555555688999999964333
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.03 E-value=4.3e+02 Score=23.39 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=42.8
Q ss_pred HhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhC--CCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE
Q 027344 121 DKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKD--NSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF 198 (224)
Q Consensus 121 ~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~--~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL 198 (224)
..++|.++.+|.. |.... -...+++|+.+.+.+.... ....++||--.+-++-.+.-+..+. ..-.+.++|+
T Consensus 151 ~~~~~D~ViIDT~----G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~-~~~~~~g~Il 224 (272)
T TIGR00064 151 KARNIDVVLIDTA----GRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN-EAVGLTGIIL 224 (272)
T ss_pred HHCCCCEEEEeCC----CCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH-hhCCCCEEEE
Confidence 3578999999963 33321 2344666777666554211 2345666665556666666555541 1236889998
Q ss_pred Ec
Q 027344 199 QV 200 (224)
Q Consensus 199 ~a 200 (224)
.-
T Consensus 225 TK 226 (272)
T TIGR00064 225 TK 226 (272)
T ss_pred Ec
Confidence 63
No 450
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=25.95 E-value=2.2e+02 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEch
Q 027344 113 LEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHST 174 (224)
Q Consensus 113 ~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSm 174 (224)
...+.+.|..-||.|+.+ | | .+++.|.++++..++. ..++.+++.|-.
T Consensus 195 ~~~~~~k~~a~Gw~v~~v~d------G-------hd~~~i~~A~~~a~~~-~~kP~~Ii~~Tv 243 (332)
T PF00456_consen 195 SEDIAKKFEAFGWNVIEVCD------G-------HDVEAIYAAIEEAKAS-KGKPTVIIARTV 243 (332)
T ss_dssp HSHHHHHHHHTT-EEEEEEE------T-------TBHHHHHHHHHHHHHS-TSS-EEEEEEE-
T ss_pred chHHHHHHHHhhhhhccccc------C-------cHHHHHHHHHHHHHhc-CCCCceeecceE
Confidence 456788888999999987 5 3 2577888888877643 357888888854
No 451
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=25.58 E-value=3.1e+02 Score=23.15 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=16.9
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcc
Q 027344 110 TEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
..+-+.|.++|.++||.|+ |+
T Consensus 12 ~~lK~~l~~~L~~~G~eV~--D~ 32 (171)
T PRK08622 12 TDEKMAVSDYLKSKGHEVI--DV 32 (171)
T ss_pred HHHHHHHHHHHHHCCCEEE--Ec
Confidence 4566778999999999986 55
No 452
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.57 E-value=4.7e+02 Score=23.58 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=50.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC-----CCCCCCChhh---hHHHHHHHHHHHHhhC---
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY-----TGYGTSSLQQ---DAMEIDQLISYLINKD--- 162 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-----~G~G~Ssl~~---~~eDL~~lIe~L~~~~--- 162 (224)
.+.+|+|-|..++-. . ..|++.|.++||.|++--.+... ..+|...+.- +-+++..+..++++..
T Consensus 6 ~~k~VlItgcs~GGI--G--~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGI--G--YALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCCeEEEeecCCcch--h--HHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 345556655443321 2 25899999999999986432110 0233322221 2455666666666410
Q ss_pred -------------------------CCCcEEEEEEchhHHHHHHHHHHh
Q 027344 163 -------------------------NSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 163 -------------------------~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
..=++-++||=-=|.-..+++.+.
T Consensus 82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika 130 (289)
T KOG1209|consen 82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA 130 (289)
T ss_pred eEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc
Confidence 011577888877777777877774
No 453
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.48 E-value=2.7e+02 Score=23.43 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHhCCcEEEEEcccCCC------CCCCCC--Chh---hhHHHHHHHHHHHHhhCC
Q 027344 115 PLAIALDKERWSLVQFLMTSSY------TGYGTS--SLQ---QDAMEIDQLISYLINKDN 163 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~------~G~G~S--sl~---~~~eDL~~lIe~L~~~~~ 163 (224)
.++++|.++|++|+..+.+... ...|.. .+. .+.++++++++.+.++.+
T Consensus 23 aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 23 GMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred HHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 5788888999999987642100 001110 001 135677778877766554
No 454
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=25.40 E-value=3.2e+02 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=21.1
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
..+++.+|-+ +. =..+++.|.++|++|+..+.
T Consensus 6 k~vlItGas~-gI-----G~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 6 EVVLVTGGAS-GL-----GRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred cEEEEECCCC-hH-----HHHHHHHHHHCCCEEEEEeC
Confidence 4555566533 21 12477888889999998874
No 455
>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Probab=25.34 E-value=2.4e+02 Score=29.17 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=48.7
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCC-CCCCCChhhhHHHHHHHHHHHHh---hCCCCcEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYT-GYGTSSLQQDAMEIDQLISYLIN---KDNSEGVV 168 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~-G~G~Ssl~~~~eDL~~lIe~L~~---~~~~~~Vv 168 (224)
.+|.-|++.||.+ .++....+.+.|.++|..|...+-..... ........+..+++..+.+++++ +.+.++|.
T Consensus 160 ~~~~~i~l~GF~~---~tP~q~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~E~~~~a~~l~~~l~~~p~~~ia 236 (874)
T TIGR03623 160 RLPKQIILAGFDE---LTPQQQALLAALEARGVDVQQWLPESGEQASAQRLACADPEAEIRAAARWARQQLEANPAARIG 236 (874)
T ss_pred CCCccEEEEecCC---CCHHHHHHHHHHHHcCceeEecccccCCCCcceeEecCChHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 4577788889864 35677788889988888874432211000 00111223334555555555544 34567899
Q ss_pred EEEEchhHH
Q 027344 169 LLGHSTGCQ 177 (224)
Q Consensus 169 LvGHSmGG~ 177 (224)
||--.+...
T Consensus 237 Vv~pdl~~~ 245 (874)
T TIGR03623 237 VVVPNLEAL 245 (874)
T ss_pred EECCcHHHH
Confidence 999888764
No 456
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=25.32 E-value=75 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.111 Sum_probs=23.3
Q ss_pred ceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 95 QQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 95 ~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
+.+|-|=|||+ |=..+++.|.++||.|++.|-
T Consensus 52 tl~IaIIGfGn------mGqflAetli~aGh~li~hsR 83 (480)
T KOG2380|consen 52 TLVIAIIGFGN------MGQFLAETLIDAGHGLICHSR 83 (480)
T ss_pred ceEEEEEecCc------HHHHHHHHHHhcCceeEecCc
Confidence 44566778874 323478888899999999873
No 457
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.31 E-value=1.3e+02 Score=26.67 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=24.6
Q ss_pred CceEEEECCCCCCCC--ChhcHHHHHHHHHhCCcEEEE
Q 027344 94 QQQVIFIGGLTDGFF--ATEYLEPLAIALDKERWSLVQ 129 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~--~~~y~~~La~~L~~~Gy~Vi~ 129 (224)
++.|+++||-..... ...+|..+++.|.++|+.++.
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl 215 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKL 215 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEE
Confidence 456777888643222 244677899999888998764
No 458
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=25.31 E-value=2.8e+02 Score=21.99 Aligned_cols=41 Identities=10% Similarity=0.265 Sum_probs=27.7
Q ss_pred ChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHH
Q 027344 143 SLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYM 183 (224)
Q Consensus 143 sl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya 183 (224)
++.+..+-+..+++.+.++.+.++|++|+|..=-...+.++
T Consensus 116 s~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~~~ 156 (177)
T TIGR03162 116 SFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLAHL 156 (177)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 56666777788888887665667899999974333333333
No 459
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=25.18 E-value=1.1e+02 Score=26.64 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=14.9
Q ss_pred cHHHHHHHHHhCCcEEEEEcc
Q 027344 112 YLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 112 y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
-++.++++|.++||.|.-+.+
T Consensus 50 aMRhfa~~L~~~G~~V~Y~~~ 70 (224)
T PF04244_consen 50 AMRHFADELRAKGFRVHYIEL 70 (224)
T ss_dssp HHHHHHHHHHHTT--EEEE-T
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 356788999999999998876
No 460
>PLN02735 carbamoyl-phosphate synthase
Probab=25.00 E-value=4.4e+02 Score=28.48 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHhCCcEEEEEcccCCCCC--CCCCC----hhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHH
Q 027344 115 PLAIALDKERWSLVQFLMTSSYTG--YGTSS----LQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~G--~G~Ss----l~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
+.+.+|.+.||.++.+|....... |..++ .+-..+++ ++.+.++ +.+ .|+. ++||+..+.++..
T Consensus 599 ~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~v---l~i~~~e-~~d-~Vi~--~~Ggq~~l~la~~ 668 (1102)
T PLN02735 599 HASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDV---LNVIDLE-RPD-GIIV--QFGGQTPLKLALP 668 (1102)
T ss_pred HHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHH---HHHHHHh-CCC-EEEE--CCCchHHHHHHHH
Confidence 477889999999999987432222 22222 01124444 4444332 222 3333 4788877665554
No 461
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=24.94 E-value=2.7e+02 Score=25.96 Aligned_cols=64 Identities=8% Similarity=0.138 Sum_probs=38.6
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++|.|- +.....+++.+.+.|.+.|+.+..+| +.-. +...+.++++++.+++. +.+-|+-+|
T Consensus 23 k~liVtd~--~~~~~g~~~~v~~~L~~~gi~~~~f~------~v~~---~p~~~~v~~~~~~~~~~-~~D~IIaiG 86 (398)
T cd08178 23 RAFIVTDR--FMVKLGYVDKVIDVLKRRGVETEVFS------DVEP---DPSLETVRKGLELMNSF-KPDTIIALG 86 (398)
T ss_pred eEEEEcCh--hHHhCccHHHHHHHHHHCCCeEEEec------CCCC---CcCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 34556552 22334577889999998999887775 2111 22356677777776643 445555565
No 462
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=24.88 E-value=1.5e+02 Score=24.92 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=41.8
Q ss_pred HHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceE
Q 027344 117 AIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAA 196 (224)
Q Consensus 117 a~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gv 196 (224)
.+.|.+.|..++.. +-+ --|+.++++.|++ .+.++|.+.| |+.++..++... -|+.+
T Consensus 109 ~~~l~~~~~~v~~~-------~~~-------~~dl~~~l~~L~~-~g~~~vlveG---G~~l~~~fl~~~-----LvDel 165 (217)
T PRK05625 109 VEELEKKGAEVIVA-------GGE-------RVDLPDLLEDLYE-RGIKRLMVEG---GGTLIWSMFKEG-----LVDEV 165 (217)
T ss_pred HHHHHHCCCEEEEe-------CCC-------CcCHHHHHHHHHH-CCCCEEEEec---CHHHHHHHHHCC-----CCcEE
Confidence 35566788887642 111 1457788888875 4667888887 788888888654 66666
Q ss_pred EE-Eccc
Q 027344 197 IF-QVLT 202 (224)
Q Consensus 197 IL-~aPv 202 (224)
++ ++|+
T Consensus 166 ~l~i~P~ 172 (217)
T PRK05625 166 RVTVGPK 172 (217)
T ss_pred EEEEcCe
Confidence 44 5665
No 463
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=24.80 E-value=4.1e+02 Score=25.33 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=25.8
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
.+..|+|..|-............+.+.|.+.|+.|+.+
T Consensus 259 ~~~~v~~f~GC~~~~~~~~~~~a~~~vL~~~G~~~~~~ 296 (486)
T PRK06259 259 EKLRVAFFTGCLVDYRLQEVGKDAIRVLNAHGISVIIP 296 (486)
T ss_pred CCeEEEEECCccccccchHHHHHHHHHHHHCCCeEecC
Confidence 34567788885544344455556677888999999765
No 464
>PLN02417 dihydrodipicolinate synthase
Probab=24.75 E-value=4.9e+02 Score=22.99 Aligned_cols=86 Identities=13% Similarity=-0.038 Sum_probs=49.9
Q ss_pred ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEc-hhHHHHHHHHHHhc
Q 027344 109 ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHS-TGCQDIVHYMRANA 187 (224)
Q Consensus 109 ~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHS-mGG~val~ya~~~~ 187 (224)
...-+..+++++.+.|..-+.+. +.-|.. ..-..++-.++++.+.+..+.+--+++|-+ +.-..++++++..
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~-----GstGE~-~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a- 92 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVG-----GTTGEG-QLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQG- 92 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-----ccCcch-hhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHH-
Confidence 34456678888888887766553 111221 111244555566665554344334555554 3566777777664
Q ss_pred ccccccceEEEEccc
Q 027344 188 ACSRAVRAAIFQVLT 202 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv 202 (224)
..-.++++++..|.
T Consensus 93 -~~~Gadav~~~~P~ 106 (280)
T PLN02417 93 -FAVGMHAALHINPY 106 (280)
T ss_pred -HHcCCCEEEEcCCc
Confidence 35578888888774
No 465
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.68 E-value=62 Score=28.96 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHhhC----CCCcEEEEEEch
Q 027344 146 QDAMEIDQLISYLINKD----NSEGVVLLGHST 174 (224)
Q Consensus 146 ~~~eDL~~lIe~L~~~~----~~~~VvLvGHSm 174 (224)
+..+|++++++.|.+.+ ..+.+++|||=.
T Consensus 119 ~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt 151 (262)
T PF06180_consen 119 NSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGT 151 (262)
T ss_dssp -SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---
T ss_pred CChHHHHHHHHHHHHhccccCCCCEEEEEeCCC
Confidence 45778888888876543 356799999954
No 466
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=24.67 E-value=86 Score=28.74 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=17.6
Q ss_pred CCCcEEEEEEchhHHHHHHHHH
Q 027344 163 NSEGVVLLGHSTGCQDIVHYMR 184 (224)
Q Consensus 163 ~~~~VvLvGHSmGG~val~ya~ 184 (224)
+.++.++.|||+|=+-++..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 5788999999999887766544
No 467
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=24.66 E-value=53 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.7
Q ss_pred HHHHHHHhCCcEEEEEcccC
Q 027344 115 PLAIALDKERWSLVQFLMTS 134 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrs 134 (224)
++++.|.++++.+..+|+..
T Consensus 22 P~~~~l~~~~~~v~v~d~~~ 41 (147)
T PF04016_consen 22 PLVEKLKERGAEVRVFDLNP 41 (147)
T ss_dssp CCHHHHCCCCSEEEEEESSG
T ss_pred HHHHHHhcCCCCEEEEECCC
Confidence 35667777899999999854
No 468
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=24.61 E-value=1.2e+02 Score=24.84 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=11.3
Q ss_pred HHHHHhCCcEEEEE
Q 027344 117 AIALDKERWSLVQF 130 (224)
Q Consensus 117 a~~L~~~Gy~Vi~~ 130 (224)
..+|++.||+|+.+
T Consensus 101 ~~~L~~~GwrvlvV 114 (150)
T COG3727 101 IKRLQQLGWRVLVV 114 (150)
T ss_pred HHHHHHcCCeEEEE
Confidence 45789999999765
No 469
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.46 E-value=4.1e+02 Score=23.80 Aligned_cols=38 Identities=21% Similarity=0.058 Sum_probs=23.6
Q ss_pred CCceEEEECCCCC-CCC-C-hhcHHHHHHHHHhCCcEEEEE
Q 027344 93 YQQQVIFIGGLTD-GFF-A-TEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 93 ~~~~IVfVHGlg~-~~~-~-~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
.++.|++.+|-.. -.. | .+.|..+++.|.+.|++|+.+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~ 219 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF 219 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 3456666666431 112 2 345678999988789988764
No 470
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.41 E-value=1.8e+02 Score=26.36 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=36.2
Q ss_pred HHHHHHHhCCcEEEEEcccCCCC-CCCCCChh-hhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 115 PLAIALDKERWSLVQFLMTSSYT-GYGTSSLQ-QDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~~-G~G~Ssl~-~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++...++||.++..-++..-+ -+-...+. --+.++.++++++++ .+..+|++.|
T Consensus 19 ~va~~a~~~G~~~~ii~l~~eaD~~~~~~e~~~~~iG~vg~lik~l~~-~~v~~vVl~G 76 (279)
T COG3494 19 EVAENARNQGYAPFIIGLRGEADPELKEFEYKEVSIGEVGKLIKLLKT-EGVDRVVLAG 76 (279)
T ss_pred HHHHHHHhCCCCcEEEEecCccchhhhcCCCeEEeHHHHHHHHHHHHH-cCCcEEEEec
Confidence 47788888999999987753211 00000111 237789999999985 4567788877
No 471
>PRK08265 short chain dehydrogenase; Provisional
Probab=24.38 E-value=2.9e+02 Score=23.39 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHHhCCcEEEEEcccCCC-----CCCCC-C-Chh---hhHHHHHHHHHHHHhhCC
Q 027344 115 PLAIALDKERWSLVQFLMTSSY-----TGYGT-S-SLQ---QDAMEIDQLISYLINKDN 163 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlrss~-----~G~G~-S-sl~---~~~eDL~~lIe~L~~~~~ 163 (224)
.+++.|.++|++|+..+.+... ...+. . .+. .+.+++.++++.+.++++
T Consensus 21 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 21 AVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5788888899999988753110 00010 0 001 135667777777766544
No 472
>PRK02399 hypothetical protein; Provisional
Probab=24.26 E-value=6.1e+02 Score=24.40 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=29.2
Q ss_pred HHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE
Q 027344 154 LISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF 198 (224)
Q Consensus 154 lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL 198 (224)
+++.|.++...+-|+-+|-|+|..++...++.- |--+-+++.
T Consensus 86 ~v~~L~~~g~i~gviglGGs~GT~lat~aMr~L---PiG~PKlmV 127 (406)
T PRK02399 86 FVRELYERGDVAGVIGLGGSGGTALATPAMRAL---PIGVPKLMV 127 (406)
T ss_pred HHHHHHhcCCccEEEEecCcchHHHHHHHHHhC---CCCCCeEEE
Confidence 333344444567799999999999999999875 444444444
No 473
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=24.23 E-value=3e+02 Score=29.95 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=62.3
Q ss_pred ceEEEECCCCCC---CCChhcHHHHHHHHHhCCcEEEEE-cccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEE
Q 027344 95 QQVIFIGGLTDG---FFATEYLEPLAIALDKERWSLVQF-LMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLL 170 (224)
Q Consensus 95 ~~IVfVHGlg~~---~~~~~y~~~La~~L~~~Gy~Vi~~-Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLv 170 (224)
..|.+.+...+- .+...|+..+++.|.+.|...+.+ |. .|... -.++.++++.|+++.+ .+|.+=
T Consensus 670 ~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt----~Gll~------P~~~~~Lv~~lk~~~~-~pi~~H 738 (1143)
T TIGR01235 670 AAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDM----AGLLK------PAAAKLLIKALREKTD-LPIHFH 738 (1143)
T ss_pred EEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCC----cCCcC------HHHHHHHHHHHHHhcC-CeEEEE
Confidence 356666544332 245677788898898888877766 43 13222 4567788888887764 679999
Q ss_pred EEchhHHHHHHHHHHhcccccccceEEE
Q 027344 171 GHSTGCQDIVHYMRANAACSRAVRAAIF 198 (224)
Q Consensus 171 GHSmGG~val~ya~~~~~~~~~V~gvIL 198 (224)
.|..-|+-+..++.....+.+.|+..|.
T Consensus 739 ~Hdt~Gla~an~laA~eaGad~vD~ai~ 766 (1143)
T TIGR01235 739 THDTSGIAVASMLAAVEAGVDVVDVAVD 766 (1143)
T ss_pred ECCCCCcHHHHHHHHHHhCCCEEEecch
Confidence 9999888777777654345566666553
No 474
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=24.17 E-value=92 Score=26.74 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=13.1
Q ss_pred HHHHHhCCcEEEEEccc
Q 027344 117 AIALDKERWSLVQFLMT 133 (224)
Q Consensus 117 a~~L~~~Gy~Vi~~Dlr 133 (224)
+..|+++||.|+++|+.
T Consensus 52 a~~LA~~G~~V~avD~s 68 (218)
T PRK13255 52 MLWLAEQGHEVLGVELS 68 (218)
T ss_pred HHHHHhCCCeEEEEccC
Confidence 34455789999999984
No 475
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=24.11 E-value=4.2e+02 Score=22.02 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCC-----CCCCCCChhhhHHHHHHHHHHHHhhCCCCcE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSY-----TGYGTSSLQQDAMEIDQLISYLINKDNSEGV 167 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~-----~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~V 167 (224)
..|.++-|+|-. ..-+...++.+.+.||..+-++..+.. .+||. .+.+..+-+.++++.+++..+ .+
T Consensus 54 ~~p~~~qi~g~~-----~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~-~l~~~~~~~~eii~~v~~~~~-~~- 125 (231)
T cd02801 54 ERPLIVQLGGSD-----PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGA-ALLKDPELVAEIVRAVREAVP-IP- 125 (231)
T ss_pred CCCEEEEEcCCC-----HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeee-hhcCCHHHHHHHHHHHHHhcC-CC-
Confidence 456777788742 234456777777789999988764321 24553 344556667777777776544 23
Q ss_pred EEEEEchhH---HHHHHHHHHhcccccccceEEEE
Q 027344 168 VLLGHSTGC---QDIVHYMRANAACSRAVRAAIFQ 199 (224)
Q Consensus 168 vLvGHSmGG---~val~ya~~~~~~~~~V~gvIL~ 199 (224)
+.+.-..|- ....+++... ....++.+.+.
T Consensus 126 v~vk~r~~~~~~~~~~~~~~~l--~~~Gvd~i~v~ 158 (231)
T cd02801 126 VTVKIRLGWDDEEETLELAKAL--EDAGASALTVH 158 (231)
T ss_pred EEEEEeeccCCchHHHHHHHHH--HHhCCCEEEEC
Confidence 333333332 1444555443 12246666543
No 476
>PRK15219 carbonic anhydrase; Provisional
Probab=24.10 E-value=60 Score=28.81 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEchhHH
Q 027344 150 EIDQLISYLINKDNSEGVVLLGHSTGCQ 177 (224)
Q Consensus 150 DL~~lIe~L~~~~~~~~VvLvGHSmGG~ 177 (224)
|+...+||.....+.+.|+++||+-=|.
T Consensus 128 ~~~~slEyAv~~L~v~~IvVlGHt~CGa 155 (245)
T PRK15219 128 DLLGSMEFACAVAGAKVVLVMGHTACGA 155 (245)
T ss_pred chhhHHHHHHHHcCCCEEEEecCCcchH
Confidence 4566788877777888999999995443
No 477
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=24.08 E-value=1.2e+02 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=16.9
Q ss_pred cHHHHHHHHHhCCcEEEEEcc
Q 027344 112 YLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 112 y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
.-..++..|.++|.+|+.+|.
T Consensus 16 ~~~~la~~~~~~~~~vl~~d~ 36 (104)
T cd02042 16 TAVNLAAALARRGKRVLLIDL 36 (104)
T ss_pred HHHHHHHHHHhCCCcEEEEeC
Confidence 344688888889999999986
No 478
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=24.07 E-value=1.7e+02 Score=24.45 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHhcccccccceEEE-EccccC
Q 027344 150 EIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRANAACSRAVRAAIF-QVLTID 204 (224)
Q Consensus 150 DL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~~~~~~~V~gvIL-~aPv~D 204 (224)
|+.++++.|+++ +.++|.+.| |+.++..+++. .-|+.+++ ++|+..
T Consensus 129 dl~~~l~~L~~~-g~~~llveG---G~~L~~~fl~~-----~LvDel~l~i~P~il 175 (216)
T TIGR00227 129 DLKKLMEILYEE-GINSVMVEG---GGTLNGSLLKE-----GLVDELIVYIAPKLL 175 (216)
T ss_pred CHHHHHHHHHHc-CCCEEEEee---CHHHHHHHHHC-----CCCCEEEEEECchhh
Confidence 577788888754 667788866 66666666654 36777644 677643
No 479
>PRK10279 hypothetical protein; Provisional
Probab=24.05 E-value=1.1e+02 Score=27.68 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHhhCCCCcEEEEEEchhHHHHHHHHHH
Q 027344 154 LISYLINKDNSEGVVLLGHSTGCQDIVHYMRA 185 (224)
Q Consensus 154 lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~ 185 (224)
+++.|.+ .+.+.-.+.|-|+|+.++..|+..
T Consensus 23 VL~aL~E-~gi~~d~i~GtS~GAlvga~yA~g 53 (300)
T PRK10279 23 VINALKK-VGIEIDIVAGCSIGSLVGAAYACD 53 (300)
T ss_pred HHHHHHH-cCCCcCEEEEEcHHHHHHHHHHcC
Confidence 4455543 456678999999999999999854
No 480
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=24.01 E-value=1.6e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=19.8
Q ss_pred EEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEE
Q 027344 97 VIFIGGLTDGFFATEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 97 IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
+|.|=|..+.-. +.+.+.|+..|.++||+|..+
T Consensus 2 vv~VvG~~~sGK-TTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGK-TTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSH-HHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCH-HHHHHHHHHHHhHcCCceEEE
Confidence 344444433223 457778999999999999855
No 481
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.99 E-value=3.6e+02 Score=21.93 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=16.6
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcc
Q 027344 110 TEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
..+-+.+.++|+++||.|+ |+
T Consensus 11 ~~lK~~l~~~L~~~g~eV~--D~ 31 (143)
T TIGR01120 11 FILKEEIKAFLVERGVKVI--DK 31 (143)
T ss_pred HHHHHHHHHHHHHCCCEEE--Ee
Confidence 4566678899999999986 55
No 482
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=23.94 E-value=1.5e+02 Score=28.04 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHh---hCCCCcEEEEEEchhHHHHHHHHHHhc------ccccccceEEEEccccChHH
Q 027344 145 QQDAMEIDQLISYLIN---KDNSEGVVLLGHSTGCQDIVHYMRANA------ACSRAVRAAIFQVLTIDFEI 207 (224)
Q Consensus 145 ~~~~eDL~~lIe~L~~---~~~~~~VvLvGHSmGG~val~ya~~~~------~~~~~V~gvIL~aPv~D~e~ 207 (224)
.+.+.|+-++++.+.. ++...+++++.-|+||-.+..++.... .-.-+..+|+|=-+++.++-
T Consensus 99 ~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D 170 (414)
T KOG1283|consen 99 KQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPED 170 (414)
T ss_pred HHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccChhH
Confidence 4456777777776654 345678999999999999988887641 11235567777666655553
No 483
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=23.92 E-value=5.3e+02 Score=23.09 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=40.5
Q ss_pred ceEEEECCCCCCCC----------ChhcHHHHHHHHHhCCcEEEEEcccCCCCCC-C---CCChhhhHHHHHHHHHHHHh
Q 027344 95 QQVIFIGGLTDGFF----------ATEYLEPLAIALDKERWSLVQFLMTSSYTGY-G---TSSLQQDAMEIDQLISYLIN 160 (224)
Q Consensus 95 ~~IVfVHGlg~~~~----------~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~-G---~Ssl~~~~eDL~~lIe~L~~ 160 (224)
.+++-|+|++.+.. ...+.+.+++.+.+.|+.=+-+|+- +++. | ....+.+.+.+..+++.|++
T Consensus 86 kvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE--~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~ 163 (322)
T cd06548 86 KILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWE--YPGSGGAPGNVARPEDKENFTLLLKELRE 163 (322)
T ss_pred EEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCc--CCCCCCCCCCCCChhHHHHHHHHHHHHHH
Confidence 57777899875411 1245566777888888888888873 3322 1 11123456667777777776
Q ss_pred hC
Q 027344 161 KD 162 (224)
Q Consensus 161 ~~ 162 (224)
++
T Consensus 164 ~l 165 (322)
T cd06548 164 AL 165 (322)
T ss_pred HH
Confidence 43
No 484
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.90 E-value=4e+02 Score=21.71 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=50.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhC--CcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKE--RWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~--Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
+..|.|++|-. ...+.+++.|.++ |.+++... .|+- +-+|.+++++.+.+. .-.++++|
T Consensus 48 ~~~ifllG~~~------~~~~~~~~~l~~~yP~l~ivg~~-----~g~f------~~~~~~~i~~~I~~~--~pdiv~vg 108 (172)
T PF03808_consen 48 GKRIFLLGGSE------EVLEKAAANLRRRYPGLRIVGYH-----HGYF------DEEEEEAIINRINAS--GPDIVFVG 108 (172)
T ss_pred CCeEEEEeCCH------HHHHHHHHHHHHHCCCeEEEEec-----CCCC------ChhhHHHHHHHHHHc--CCCEEEEE
Confidence 35677777743 3445566666654 45555332 2322 345566667766653 34799999
Q ss_pred EchhHHHHHHHHHHhcccccccceEEEEccccC
Q 027344 172 HSTGCQDIVHYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 172 HSmGG~val~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
--+.-|-.+.+-.+. .-...-+|.++...|
T Consensus 109 lG~PkQE~~~~~~~~---~l~~~v~i~vG~~~d 138 (172)
T PF03808_consen 109 LGAPKQERWIARHRQ---RLPAGVIIGVGGAFD 138 (172)
T ss_pred CCCCHHHHHHHHHHH---HCCCCEEEEECchhh
Confidence 888888755554443 223333455666555
No 485
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=23.80 E-value=2.4e+02 Score=24.47 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=26.0
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcc
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
+.+|+++..+...-...+....-.+.|.+.|+.|+-+..
T Consensus 132 ~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~ 170 (209)
T PLN02496 132 SKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVT 170 (209)
T ss_pred CCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCc
Confidence 457778877654433334445556778889999987754
No 486
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.79 E-value=3e+02 Score=25.50 Aligned_cols=64 Identities=6% Similarity=0.132 Sum_probs=38.3
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++|.|- +.....+++++.+.|++.|..+..+| +... +...++++++++.+++. +.+-|+-+|
T Consensus 32 ~~lvvtd~--~~~~~g~~~~v~~~L~~~g~~~~~~~------~v~~---~p~~~~v~~~~~~~~~~-~~D~IIaiG 95 (382)
T PRK10624 32 KALIVTDK--TLVKCGVVAKVTDVLDAAGLAYEIYD------GVKP---NPTIEVVKEGVEVFKAS-GADYLIAIG 95 (382)
T ss_pred EEEEEeCc--chhhCcchHHHHHHHHHCCCeEEEeC------CCCC---CcCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 45555552 22334577888899998898887765 1111 22357777777777653 444455455
No 487
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.78 E-value=2.7e+02 Score=22.73 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=34.7
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEchh
Q 027344 110 TEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHSTG 175 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSmG 175 (224)
..++..+.+...+++++++.+ |. .-+.++++.+.|+++++ .+.++|+.-|
T Consensus 34 ~dl~~~l~~~~~~~~~~ifll---------G~-----~~~~~~~~~~~l~~~yP--~l~ivg~~~g 83 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLL---------GG-----SEEVLEKAAANLRRRYP--GLRIVGYHHG 83 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEE---------eC-----CHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 456677777777888888765 22 13556677777777765 6788887777
No 488
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=23.78 E-value=1.3e+02 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=16.8
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQF 130 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~ 130 (224)
+|++|.||-++-+ +.++..+.+ ...+|.++..+
T Consensus 1 Pv~ii~GfLGsGK-TTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 1 PVIIITGFLGSGK-TTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp -EEEEEESTTSSH-HHHHHHHHH-HHTTTS-EEEE
T ss_pred CEEEEEcCCCCCH-HHHHHHHHH-HhcCCceeEEE
Confidence 4566777765434 445666664 33345554433
No 489
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=23.71 E-value=5.3e+02 Score=22.99 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=55.9
Q ss_pred CceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCC----CCCCCChhhhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 94 QQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYT----GYGTSSLQQDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~----G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
.|+|+-+-|-. ....+..+++.+++.|+..+-+++.+... +.|. .+.++.+.+.++++.+++..+ .+|++
T Consensus 100 ~p~i~si~G~~----~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~-~l~~~~~~~~~iv~~v~~~~~-~Pv~v 173 (299)
T cd02940 100 KILIASIMCEY----NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGA-AVGQDPELVEEICRWVREAVK-IPVIA 173 (299)
T ss_pred CeEEEEecCCC----CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCch-hhccCHHHHHHHHHHHHHhcC-CCeEE
Confidence 45666666631 12344557788877788888888865442 2222 344567778888888876432 33433
Q ss_pred EEEchhHHHHHHHHHHhcccccccceEEEEcc
Q 027344 170 LGHSTGCQDIVHYMRANAACSRAVRAAIFQVL 201 (224)
Q Consensus 170 vGHSmGG~val~ya~~~~~~~~~V~gvIL~aP 201 (224)
= -+..--...+++..- ....++++++...
T Consensus 174 K-l~~~~~~~~~~a~~~--~~~Gadgi~~~Nt 202 (299)
T cd02940 174 K-LTPNITDIREIARAA--KEGGADGVSAINT 202 (299)
T ss_pred E-CCCCchhHHHHHHHH--HHcCCCEEEEecc
Confidence 3 333322333444432 1346888887653
No 490
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.67 E-value=5e+02 Score=22.68 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=47.1
Q ss_pred ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEEEch-hHHHHHHHHHHhc
Q 027344 109 ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLGHST-GCQDIVHYMRANA 187 (224)
Q Consensus 109 ~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvGHSm-GG~val~ya~~~~ 187 (224)
...-+..+.++|.+.|..-+.+. .+. |.. ..-..++-.++++.+.+....+-.+++|=+- .-..++++++..
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~-Gst----GE~-~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a- 91 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVC-GTT----GES-PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRA- 91 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-CCC----cch-hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHH-
Confidence 34455667788888887776653 111 211 1122445555566555543433344555443 344566666553
Q ss_pred ccccccceEEEEccc
Q 027344 188 ACSRAVRAAIFQVLT 202 (224)
Q Consensus 188 ~~~~~V~gvIL~aPv 202 (224)
..-.++++++..|.
T Consensus 92 -~~~G~d~v~~~~P~ 105 (284)
T cd00950 92 -EKAGADAALVVTPY 105 (284)
T ss_pred -HHcCCCEEEEcccc
Confidence 34578888888775
No 491
>PRK03094 hypothetical protein; Provisional
Probab=23.57 E-value=77 Score=23.55 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCcEEEEEc
Q 027344 114 EPLAIALDKERWSLVQFL 131 (224)
Q Consensus 114 ~~La~~L~~~Gy~Vi~~D 131 (224)
..+.++|.++||.|+.+.
T Consensus 11 s~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLR 28 (80)
T ss_pred HHHHHHHHHCCCEEEecC
Confidence 458899999999998664
No 492
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.56 E-value=1.8e+02 Score=23.53 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
.++++++++.+.+ .++|+++|.-.-+.++.++..+.
T Consensus 20 ~~~l~~~~~~i~~---a~~I~i~G~G~S~~~A~~~~~~l 55 (179)
T cd05005 20 EEELDKLISAILN---AKRIFVYGAGRSGLVAKAFAMRL 55 (179)
T ss_pred HHHHHHHHHHHHh---CCeEEEEecChhHHHHHHHHHHH
Confidence 5667777777764 47899999876666666665543
No 493
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=23.54 E-value=4.3e+02 Score=21.97 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=15.1
Q ss_pred HHHHHHHhCCcEEEEEcc
Q 027344 115 PLAIALDKERWSLVQFLM 132 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dl 132 (224)
.++++|.++||+|+..|.
T Consensus 17 ~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 17 FLCHGLAEEGYRVAVADI 34 (259)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 477888889999999875
No 494
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=23.46 E-value=2.3e+02 Score=26.54 Aligned_cols=35 Identities=6% Similarity=0.140 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEchhHHHHHHHHHHh
Q 027344 148 AMEIDQLISYLINKDNSEGVVLLGHSTGCQDIVHYMRAN 186 (224)
Q Consensus 148 ~eDL~~lIe~L~~~~~~~~VvLvGHSmGG~val~ya~~~ 186 (224)
++|...+.+++.+. ..++++++| ||.++++++...
T Consensus 133 ~~~~~~l~~~l~~~-~~~~vvViG---gG~ig~E~A~~l 167 (438)
T PRK13512 133 LEDTDAIDQFIKAN-QVDKALVVG---AGYISLEVLENL 167 (438)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEC---CCHHHHHHHHHH
Confidence 45555555555432 357899999 778888877664
No 495
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=23.40 E-value=6.3e+02 Score=23.80 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=60.0
Q ss_pred CCceEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccC---CCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEE
Q 027344 93 YQQQVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTS---SYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVL 169 (224)
Q Consensus 93 ~~~~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrs---s~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvL 169 (224)
..|.|++|--+.+ |....++.-.++|. ....|+.-|+-- ..-.-|..+++++++-+.+.++++-. ...++-
T Consensus 102 pdPkvLivapmsG--H~aTLLR~TV~alL-p~~~vyitDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~Gp---~~hv~a 175 (415)
T COG4553 102 PDPKVLIVAPMSG--HYATLLRGTVEALL-PYHDVYITDWVDARMVPLEAGHFDLDDYIDYVIEMINFLGP---DAHVMA 175 (415)
T ss_pred CCCeEEEEecccc--cHHHHHHHHHHHhc-cccceeEeeccccceeecccCCccHHHHHHHHHHHHHHhCC---CCcEEE
Confidence 3568888887776 43455666677776 356777778732 12245677777777777777777632 222444
Q ss_pred EEEchhHHHHH-HHHHHhcccccccceEEEEccccC
Q 027344 170 LGHSTGCQDIV-HYMRANAACSRAVRAAIFQVLTID 204 (224)
Q Consensus 170 vGHSmGG~val-~ya~~~~~~~~~V~gvIL~aPv~D 204 (224)
|+.=.==.++. .++... ..+..-...+|++.+.|
T Consensus 176 VCQP~vPvLAAisLM~~~-~~p~~PssMtlmGgPID 210 (415)
T COG4553 176 VCQPTVPVLAAISLMEED-GDPNVPSSMTLMGGPID 210 (415)
T ss_pred EecCCchHHHHHHHHHhc-CCCCCCceeeeecCccc
Confidence 43322222222 222222 23446667788887766
No 496
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.36 E-value=3.5e+02 Score=24.88 Aligned_cols=64 Identities=14% Similarity=0.291 Sum_probs=38.7
Q ss_pred eEEEECCCCCCCCChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCCCcEEEEE
Q 027344 96 QVIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNSEGVVLLG 171 (224)
Q Consensus 96 ~IVfVHGlg~~~~~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~~~VvLvG 171 (224)
.+++|.|- +.....+++++.+.|.+.|..+..+|- ... ....+++.++++.+++. +.+-|+-+|
T Consensus 28 ~~livt~~--~~~~~~~~~~v~~~L~~~~~~~~~~~~------v~~---~p~~~~v~~~~~~~~~~-~~D~IIaiG 91 (376)
T cd08193 28 RVLVVTDP--GILKAGLIDPLLASLEAAGIEVTVFDD------VEA---DPPEAVVEAAVEAARAA-GADGVIGFG 91 (376)
T ss_pred eEEEEcCc--chhhCccHHHHHHHHHHcCCeEEEECC------CCC---CcCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 45556552 222345678888899888887776651 111 23466777777777653 445566665
No 497
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=23.36 E-value=86 Score=23.94 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred ChhhhHHHHHHHHHHHHh-hCCCCcEEEEEEch
Q 027344 143 SLQQDAMEIDQLISYLIN-KDNSEGVVLLGHST 174 (224)
Q Consensus 143 sl~~~~eDL~~lIe~L~~-~~~~~~VvLvGHSm 174 (224)
++.+..+-+..+++.+.. ..+.+.|+||+|..
T Consensus 121 s~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~ 153 (158)
T PF00300_consen 121 SWEDFQQRVKQFLDELIAYKRPGENVLIVSHGG 153 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHH
Confidence 344555666777777774 44678899999964
No 498
>PRK12744 short chain dehydrogenase; Provisional
Probab=23.35 E-value=3.2e+02 Score=22.91 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=14.8
Q ss_pred HHHHHHHhCCcEEEEEccc
Q 027344 115 PLAIALDKERWSLVQFLMT 133 (224)
Q Consensus 115 ~La~~L~~~Gy~Vi~~Dlr 133 (224)
.+++.|.++|++|+.++.+
T Consensus 23 ~~a~~l~~~G~~vv~i~~~ 41 (257)
T PRK12744 23 LIARDLAAQGAKAVAIHYN 41 (257)
T ss_pred HHHHHHHHCCCcEEEEecC
Confidence 4788888899998777653
No 499
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=23.35 E-value=2.7e+02 Score=22.72 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=16.9
Q ss_pred hhcHHHHHHHHHhCCcEEEEEcc
Q 027344 110 TEYLEPLAIALDKERWSLVQFLM 132 (224)
Q Consensus 110 ~~y~~~La~~L~~~Gy~Vi~~Dl 132 (224)
.++-+.+.++|.++||.|+ |+
T Consensus 12 ~~lK~~i~~~L~~~G~eV~--D~ 32 (141)
T TIGR01118 12 KRLKDVIKNFLVDNGFEVI--DV 32 (141)
T ss_pred HHHHHHHHHHHHHCCCEEE--Ec
Confidence 4566778899999999986 55
No 500
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=23.33 E-value=4e+02 Score=21.62 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=39.3
Q ss_pred CceEEEECCCCCCCC---------ChhcHHHHHHHHHhCCcEEEEEcccCCCCCCCCCChhhhHHHHHHHHHHHHhhCCC
Q 027344 94 QQQVIFIGGLTDGFF---------ATEYLEPLAIALDKERWSLVQFLMTSSYTGYGTSSLQQDAMEIDQLISYLINKDNS 164 (224)
Q Consensus 94 ~~~IVfVHGlg~~~~---------~~~y~~~La~~L~~~Gy~Vi~~Dlrss~~G~G~Ssl~~~~eDL~~lIe~L~~~~~~ 164 (224)
..+++-|+|...... ...+.+.+.+.+.+.|+.=+-+|+.. + +... ..+.+.+..+++.|+++.+.
T Consensus 65 ~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~--~--~~~~-~~~~~~~~~ll~~lr~~l~~ 139 (210)
T cd00598 65 LKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEY--P--GAAD-NSDRENFITLLRELRSALGA 139 (210)
T ss_pred CEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeC--C--CCcC-ccHHHHHHHHHHHHHHHhcc
Confidence 357777888764321 12345566777777788777777731 1 1111 02466778888888876554
Done!