BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027345
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 128/202 (63%), Gaps = 3/202 (1%)
Query: 24 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDF-FLSGLDKPGNTANRLGFSVTNA 82
DP PLQD CVA D K V VNG CK P +DF F S L K GNT+ G +VT
Sbjct: 2 DPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 83 NVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 142
+V + PG NTLG+S R+D+AP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPINPDFL 202
++V+ G+ FV P G++HFQFN+GKT A S SQ PG++ + T+FG+DPPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 203 GKAFQLDPNVVKDLQKKFINGN 224
KA +++ VV+ L+ KF G+
Sbjct: 180 TKALRVEAGVVELLKSKFAGGS 201
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 128/202 (63%), Gaps = 3/202 (1%)
Query: 24 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDF-FLSGLDKPGNTANRLGFSVTNA 82
DP PLQD CVA D K V VNG CK P +DF F S L K GNT+ G +VT
Sbjct: 2 DPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 83 NVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 142
+V + PG NTLG+S R+D+AP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPINPDFL 202
++V+ G+ FV P G++HFQFN+GKT A S SQ PG++ + T+FG+DPPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 203 GKAFQLDPNVVKDLQKKFINGN 224
KA +++ VV+ L+ KF G+
Sbjct: 180 TKALRVEAGVVELLKSKFAGGS 201
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 128/202 (63%), Gaps = 3/202 (1%)
Query: 24 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDF-FLSGLDKPGNTANRLGFSVTNA 82
DP PLQD CVA D K V VNG CK P +DF F S L K GNT+ G +VT
Sbjct: 2 DPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 83 NVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 142
+V + PG NTLG+S R+D+AP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPINPDFL 202
++V+ G+ FV P G++HFQFN+GKT A S SQ PG++ + T+FG+DPPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 203 GKAFQLDPNVVKDLQKKFINGN 224
KA +++ VV+ L+ KF G+
Sbjct: 180 TKALRVEAGVVELLKSKFAGGS 201
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 106 GQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIH 160
G+ H H E+ +V EGTL + F N L G+ +V P G+ H
Sbjct: 40 GEFVWHEHADTDEVFIVXEGTLQIAFRDQN--------ITLQAGEXYVIPKGVEH 86
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 146 LNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPINPD 200
L KG V +F GM F+ T A +G+ + D VF DP +NP+
Sbjct: 166 LEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPE 220
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 110 PHTHPRATEILVVLEGTLYVGFV----TSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165
PH + +A ILVV EG +V V L L+K DVFV P + I
Sbjct: 254 PHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAA---YPVAI 310
Query: 166 GKTNAVAFASLG 177
T+ V F G
Sbjct: 311 KATSNVNFTGFG 322
>pdb|2YZ1|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
pdb|2YZ1|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
Length = 120
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIAD 188
+ VLN + P+G I + +G++ + ++ G FP V ++D
Sbjct: 24 STVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSD 69
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 162 QFNIGKTNAVAFASLGSQFPGVITIA 187
QF + + AVAFA L +++P + T+A
Sbjct: 177 QFEVARQMAVAFAGLKTRYPHIDTLA 202
>pdb|1MI2|A Chain A, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|1MI2|B Chain B, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|3N52|A Chain A, Crystal Structure Analysis Of Mip2
pdb|3N52|B Chain B, Crystal Structure Analysis Of Mip2
pdb|3N52|C Chain C, Crystal Structure Analysis Of Mip2
pdb|3N52|D Chain D, Crystal Structure Analysis Of Mip2
Length = 73
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGD 150
PP H TE++ L+G V L +I K+LNKG
Sbjct: 29 TPPGPHCAQTEVIATLKGGQKVCLDPEAPLVQKIIQKILNKGK 71
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 144 KVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172
+ L +GD+F P G+ H+ +N G VA
Sbjct: 132 RHLREGDIFAMPAGVSHWAYNNGDQPLVA 160
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 110 PHTHPRATEILVVLEGTLYVGFV----------TSNQLNNTLIAKVLNKGDVFVFP 155
PH + RAT ILV EG V V S QL A L++GD+ V P
Sbjct: 56 PHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRR--YAATLSEGDIIVIP 109
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 31/146 (21%)
Query: 82 ANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTL 141
A+ ++ PG + ++ I P H HP A E VL+G + + S
Sbjct: 223 ASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASE--GKAS 278
Query: 142 IAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIA-----------DTV 190
+++ L +GDV P G H N SQ P I + T
Sbjct: 279 VSR-LQQGDVGYVPKGYGHAIRN------------SSQKPLDIVVVFNDGDYQSIDLSTW 325
Query: 191 FGADPPINPDFLGKAFQLDPNVVKDL 216
++P LG FQ+ P + K L
Sbjct: 326 LASNP---SSVLGNTFQISPELTKKL 348
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 110 PHTHPRATEILVVLEGTLYVGFV----------TSNQLNNTLIAKVLNKGDVFVFP 155
PH + RAT ILV EG V V S QL A L++GD+ V P
Sbjct: 296 PHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRR--YAATLSEGDIIVIP 349
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 130 GFVTSNQLNNTLIA-KVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASL 176
G + QL ++ + N+GDV V P G+ ++ +N G VA + L
Sbjct: 99 GSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLL 146
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 7/139 (5%)
Query: 79 VTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLN 138
++ N +P L G+SA + G PH + A ++ V G V V N
Sbjct: 350 ISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NCQG 407
Query: 139 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPIN 198
N + L +G + V P + + G + + + V + VF A P
Sbjct: 408 NAVFDGELRRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIP--- 462
Query: 199 PDFLGKAFQLDPNVVKDLQ 217
+ L ++ L + V+ L+
Sbjct: 463 SEVLSNSYNLGQSQVRQLK 481
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 144 KVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASL 176
+ N+GDV V P G+ ++ +N G VA + L
Sbjct: 115 RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLL 147
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 7/139 (5%)
Query: 79 VTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLN 138
++ N +P L G+SA + G PH + A ++ V G V V N
Sbjct: 351 ISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NXQG 408
Query: 139 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPIN 198
N + L +G + V P + + G + + + V + VF A P
Sbjct: 409 NAVFDGELRRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIP--- 463
Query: 199 PDFLGKAFQLDPNVVKDLQ 217
+ L ++ L + V+ L+
Sbjct: 464 SEVLSNSYNLGQSQVRQLK 482
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,612,766
Number of Sequences: 62578
Number of extensions: 260973
Number of successful extensions: 556
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 18
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)