Query 027345
Match_columns 224
No_of_seqs 292 out of 1763
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 6.1E-28 1.3E-32 219.9 19.8 163 46-219 200-362 (367)
2 PLN00212 glutelin; Provisional 99.9 2E-23 4.3E-28 195.4 18.5 147 69-221 322-470 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 2.8E-23 6E-28 189.4 18.1 135 74-219 48-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 3.4E-23 7.4E-28 165.5 11.7 128 71-214 9-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 3.3E-20 7.2E-25 148.5 17.1 135 73-213 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 2.3E-19 5.1E-24 168.1 19.9 141 74-219 60-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 1.5E-18 3.3E-23 145.4 12.7 151 56-221 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 8.2E-14 1.8E-18 97.1 7.5 70 99-176 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 1.6E-12 3.4E-17 101.9 11.3 86 85-178 33-118 (131)
10 COG0662 {ManC} Mannose-6-phosp 99.4 2.4E-12 5.2E-17 101.0 11.7 82 93-182 34-115 (127)
11 PRK13290 ectC L-ectoine syntha 99.4 2.6E-12 5.6E-17 100.8 11.5 81 93-183 33-114 (125)
12 PRK04190 glucose-6-phosphate i 99.3 2.3E-11 5.1E-16 101.9 13.5 88 89-179 62-157 (191)
13 COG3837 Uncharacterized conser 99.3 2.1E-11 4.5E-16 97.9 9.8 92 85-186 34-128 (161)
14 PRK11171 hypothetical protein; 99.2 4E-10 8.6E-15 99.0 14.7 109 51-177 27-136 (266)
15 PRK09943 DNA-binding transcrip 99.2 2.6E-10 5.7E-15 94.6 11.6 76 93-177 105-181 (185)
16 TIGR01479 GMP_PMI mannose-1-ph 99.2 1.9E-10 4.2E-15 108.3 12.2 78 94-179 375-452 (468)
17 PRK15460 cpsB mannose-1-phosph 99.2 3E-10 6.5E-15 107.2 11.9 77 93-177 383-459 (478)
18 PF01050 MannoseP_isomer: Mann 99.1 1E-09 2.3E-14 88.7 10.6 77 93-177 61-137 (151)
19 COG4101 Predicted mannose-6-ph 99.1 1.7E-09 3.7E-14 83.3 9.8 84 94-182 45-128 (142)
20 TIGR03214 ura-cupin putative a 99.0 2.2E-09 4.7E-14 94.0 10.6 73 94-174 178-250 (260)
21 TIGR03214 ura-cupin putative a 99.0 5.8E-09 1.3E-13 91.3 12.2 76 94-177 57-133 (260)
22 PRK11171 hypothetical protein; 99.0 5.2E-09 1.1E-13 91.9 10.6 74 94-176 183-257 (266)
23 PF02041 Auxin_BP: Auxin bindi 98.8 7.9E-08 1.7E-12 76.8 10.8 101 87-190 38-140 (167)
24 PRK13264 3-hydroxyanthranilate 98.7 9.1E-08 2E-12 79.0 9.5 69 100-175 39-107 (177)
25 TIGR03037 anthran_nbaC 3-hydro 98.7 1.4E-07 3.1E-12 76.6 9.8 60 103-167 36-95 (159)
26 PF06560 GPI: Glucose-6-phosph 98.7 3.3E-07 7.1E-12 76.3 11.4 86 90-178 45-146 (182)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.6 6.4E-07 1.4E-11 65.7 9.2 73 94-175 11-84 (85)
28 TIGR02451 anti_sig_ChrR anti-s 98.5 5.2E-07 1.1E-11 77.0 8.3 73 95-180 127-199 (215)
29 PF02311 AraC_binding: AraC-li 98.5 6.9E-07 1.5E-11 68.0 8.1 64 104-176 12-75 (136)
30 PF12973 Cupin_7: ChrR Cupin-l 98.5 5.9E-07 1.3E-11 66.2 7.1 66 94-174 23-88 (91)
31 PRK15457 ethanolamine utilizat 98.4 4.4E-06 9.5E-11 71.6 11.0 70 94-176 156-225 (233)
32 PRK10371 DNA-binding transcrip 98.4 1.8E-06 4E-11 76.8 8.7 61 98-167 29-89 (302)
33 PF03079 ARD: ARD/ARD' family; 98.3 5.4E-06 1.2E-10 67.5 10.4 71 107-182 84-154 (157)
34 COG1791 Uncharacterized conser 98.2 2E-05 4.4E-10 64.4 9.8 73 109-186 89-161 (181)
35 TIGR02272 gentisate_1_2 gentis 98.1 5.8E-06 1.3E-10 74.9 7.3 76 94-177 80-155 (335)
36 PRK10296 DNA-binding transcrip 98.1 1.6E-05 3.5E-10 69.2 9.8 52 105-165 33-84 (278)
37 PF06339 Ectoine_synth: Ectoin 98.1 4.1E-05 8.8E-10 59.7 10.4 84 91-183 31-114 (126)
38 PF05523 FdtA: WxcM-like, C-te 98.1 2.2E-05 4.8E-10 62.0 8.6 72 102-179 40-112 (131)
39 PRK13501 transcriptional activ 98.1 1.3E-05 2.9E-10 70.4 8.0 63 94-167 19-81 (290)
40 COG3435 Gentisate 1,2-dioxygen 98.0 9.4E-06 2E-10 71.9 5.9 116 54-178 43-167 (351)
41 PRK13500 transcriptional activ 98.0 2.5E-05 5.3E-10 69.8 8.7 55 104-167 57-111 (312)
42 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2E-05 4.3E-10 68.8 7.4 61 105-173 33-93 (287)
43 COG4297 Uncharacterized protei 97.9 3.4E-05 7.4E-10 61.1 6.9 66 105-176 52-118 (163)
44 PRK13503 transcriptional activ 97.9 4.3E-05 9.3E-10 66.2 7.3 53 104-165 24-76 (278)
45 PRK13502 transcriptional activ 97.8 8E-05 1.7E-09 64.9 8.4 57 102-167 25-81 (282)
46 PF14499 DUF4437: Domain of un 97.8 3.7E-05 8.1E-10 67.0 6.1 73 93-173 34-106 (251)
47 PF05899 Cupin_3: Protein of u 97.8 6E-05 1.3E-09 53.6 5.7 59 95-163 7-65 (74)
48 COG3257 GlxB Uncharacterized p 97.8 0.00024 5.1E-09 60.5 9.7 75 95-177 61-136 (264)
49 KOG2107 Uncharacterized conser 97.7 5.9E-05 1.3E-09 61.4 5.6 57 108-168 86-142 (179)
50 PF06052 3-HAO: 3-hydroxyanthr 97.7 0.00046 9.9E-09 55.5 10.1 79 98-183 36-114 (151)
51 TIGR02272 gentisate_1_2 gentis 97.5 0.00039 8.5E-09 63.1 8.5 87 76-175 232-319 (335)
52 PF06249 EutQ: Ethanolamine ut 97.3 0.00087 1.9E-08 54.3 7.2 68 95-175 77-144 (152)
53 COG4766 EutQ Ethanolamine util 97.2 0.004 8.6E-08 50.3 9.4 69 94-175 99-167 (176)
54 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.0034 7.5E-08 51.9 9.1 72 104-175 54-131 (173)
55 TIGR01221 rmlC dTDP-4-dehydror 96.9 0.019 4.2E-07 47.6 11.4 73 103-176 52-131 (176)
56 COG3450 Predicted enzyme of th 96.8 0.0022 4.8E-08 49.7 4.9 60 94-163 44-103 (116)
57 PF05995 CDO_I: Cysteine dioxy 96.8 0.028 6E-07 46.4 11.7 86 94-179 74-165 (175)
58 PF00908 dTDP_sugar_isom: dTDP 96.7 0.012 2.7E-07 48.7 9.1 80 103-182 51-138 (176)
59 PF13621 Cupin_8: Cupin-like d 96.4 0.016 3.6E-07 48.9 8.1 71 97-168 132-235 (251)
60 COG3435 Gentisate 1,2-dioxygen 96.2 0.015 3.2E-07 51.9 6.8 90 74-175 241-331 (351)
61 PF04209 HgmA: homogentisate 1 95.7 0.11 2.4E-06 48.6 10.7 61 109-177 139-199 (424)
62 PF08007 Cupin_4: Cupin superf 95.7 0.13 2.8E-06 46.3 10.8 70 96-166 114-200 (319)
63 PF13759 2OG-FeII_Oxy_5: Putat 95.5 0.052 1.1E-06 40.4 6.3 75 99-173 4-98 (101)
64 COG3806 ChrR Transcriptional a 95.4 0.079 1.7E-06 44.6 7.7 88 74-179 112-199 (216)
65 PF07385 DUF1498: Protein of u 95.4 0.096 2.1E-06 44.9 8.4 77 99-177 91-187 (225)
66 PF12852 Cupin_6: Cupin 95.2 0.1 2.2E-06 42.8 7.7 44 117-166 36-79 (186)
67 PRK10572 DNA-binding transcrip 95.1 0.087 1.9E-06 46.0 7.3 44 116-167 49-92 (290)
68 PF14499 DUF4437: Domain of un 95.0 0.02 4.3E-07 50.1 3.1 75 95-177 171-245 (251)
69 PF02678 Pirin: Pirin; InterP 95.0 0.11 2.4E-06 39.7 6.8 62 105-173 39-103 (107)
70 TIGR02466 conserved hypothetic 94.8 0.14 3.1E-06 43.3 7.6 81 96-177 97-197 (201)
71 PRK05341 homogentisate 1,2-dio 94.7 0.28 6.1E-06 46.0 10.0 58 108-174 146-203 (438)
72 KOG3995 3-hydroxyanthranilate 94.5 0.062 1.3E-06 45.8 4.7 56 103-163 41-96 (279)
73 TIGR01015 hmgA homogentisate 1 94.5 0.37 8.1E-06 45.1 10.2 62 108-177 140-201 (429)
74 PF05118 Asp_Arg_Hydrox: Aspar 94.4 0.2 4.2E-06 40.8 7.3 82 85-174 68-156 (163)
75 PLN02658 homogentisate 1,2-dio 94.3 0.41 8.8E-06 44.9 10.0 56 109-173 140-195 (435)
76 COG1741 Pirin-related protein 94.2 0.18 3.9E-06 44.8 7.1 68 99-173 48-119 (276)
77 PF02373 JmjC: JmjC domain, hy 94.2 0.11 2.4E-06 38.7 5.0 31 140-170 79-109 (114)
78 PF07847 DUF1637: Protein of u 93.7 0.48 1E-05 40.1 8.5 88 90-178 39-143 (200)
79 PRK09685 DNA-binding transcrip 93.5 0.57 1.2E-05 41.0 9.1 68 94-169 44-116 (302)
80 PRK12335 tellurite resistance 93.3 0.44 9.6E-06 42.0 8.1 62 103-166 19-82 (287)
81 COG3822 ABC-type sugar transpo 93.2 0.51 1.1E-05 39.7 7.7 80 98-179 89-188 (225)
82 PRK00924 5-keto-4-deoxyuronate 93.1 0.72 1.6E-05 40.9 9.0 83 93-180 173-261 (276)
83 KOG3706 Uncharacterized conser 92.6 0.082 1.8E-06 50.0 2.5 61 103-164 325-403 (629)
84 COG3257 GlxB Uncharacterized p 92.6 0.62 1.3E-05 40.0 7.5 78 87-173 174-252 (264)
85 COG3508 HmgA Homogentisate 1,2 92.0 2.2 4.7E-05 39.2 10.7 67 94-168 124-190 (427)
86 PRK15131 mannose-6-phosphate i 91.5 1.3 2.8E-05 41.2 9.0 59 94-163 320-378 (389)
87 PF05726 Pirin_C: Pirin C-term 90.7 1.5 3.4E-05 32.7 7.3 68 98-176 2-69 (104)
88 PLN02288 mannose-6-phosphate i 90.2 0.92 2E-05 42.3 6.8 58 94-158 333-390 (394)
89 TIGR00218 manA mannose-6-phosp 89.8 2.5 5.3E-05 37.7 9.0 59 94-163 234-292 (302)
90 PF06865 DUF1255: Protein of u 89.8 4.6 0.0001 30.1 8.9 64 101-175 29-92 (94)
91 KOG2757 Mannose-6-phosphate is 89.5 1.8 3.8E-05 39.9 7.8 80 86-176 326-405 (411)
92 PRK09391 fixK transcriptional 89.0 4.4 9.5E-05 34.2 9.6 125 94-221 35-204 (230)
93 PF09313 DUF1971: Domain of un 88.9 4.8 0.0001 29.2 8.4 63 104-167 12-75 (82)
94 PF14525 AraC_binding_2: AraC- 88.9 4.9 0.00011 31.3 9.3 66 95-168 34-99 (172)
95 PRK11753 DNA-binding transcrip 88.7 4.5 9.8E-05 33.1 9.3 121 98-221 21-193 (211)
96 PF04962 KduI: KduI/IolB famil 88.5 7.7 0.00017 34.1 11.0 97 78-180 136-247 (261)
97 PRK10579 hypothetical protein; 87.9 4.7 0.0001 30.1 7.8 46 114-165 39-84 (94)
98 COG5553 Predicted metal-depend 87.8 2.6 5.7E-05 34.6 7.0 33 95-128 73-105 (191)
99 PF11142 DUF2917: Protein of u 87.8 3.5 7.7E-05 28.3 6.7 57 100-164 2-58 (63)
100 PF00027 cNMP_binding: Cyclic 86.2 2.4 5.2E-05 29.2 5.4 49 101-152 3-51 (91)
101 COG2850 Uncharacterized conser 83.1 3.2 7E-05 38.3 6.0 65 101-166 125-203 (383)
102 PRK13918 CRP/FNR family transc 81.9 6.3 0.00014 32.1 7.0 54 99-154 8-62 (202)
103 smart00100 cNMP Cyclic nucleot 81.2 8.7 0.00019 27.1 6.8 53 99-154 19-71 (120)
104 COG1482 ManA Phosphomannose is 80.4 13 0.00029 33.6 8.9 58 94-162 241-298 (312)
105 cd00038 CAP_ED effector domain 79.3 8.7 0.00019 27.0 6.3 53 98-153 18-70 (115)
106 PHA02984 hypothetical protein; 77.3 16 0.00035 32.3 8.2 50 119-173 96-145 (286)
107 PRK10402 DNA-binding transcrip 76.6 9.1 0.0002 32.1 6.5 52 100-154 34-85 (226)
108 PRK00924 5-keto-4-deoxyuronate 74.7 22 0.00048 31.6 8.5 51 116-174 73-126 (276)
109 PF04962 KduI: KduI/IolB famil 74.6 17 0.00036 32.0 7.8 78 79-167 14-99 (261)
110 COG3123 Uncharacterized protei 74.3 12 0.00026 27.5 5.5 42 116-163 41-82 (94)
111 PLN02868 acyl-CoA thioesterase 72.9 13 0.00029 34.4 7.1 53 98-154 32-84 (413)
112 PHA02890 hypothetical protein; 72.9 23 0.00051 31.2 8.0 44 117-164 91-136 (278)
113 KOG3416 Predicted nucleic acid 72.7 12 0.00027 29.4 5.6 66 87-164 11-80 (134)
114 PRK03606 ureidoglycolate hydro 72.7 25 0.00054 28.8 7.8 65 109-173 72-138 (162)
115 TIGR00218 manA mannose-6-phosp 71.9 2.1 4.5E-05 38.2 1.4 21 141-161 150-170 (302)
116 PF04622 ERG2_Sigma1R: ERG2 an 71.2 9.5 0.00021 32.7 5.2 93 105-211 111-205 (216)
117 KOG2130 Phosphatidylserine-spe 70.8 7.3 0.00016 35.5 4.6 45 139-183 260-304 (407)
118 PF04115 Ureidogly_hydro: Urei 70.0 22 0.00049 28.9 7.0 67 109-175 73-143 (165)
119 COG1482 ManA Phosphomannose is 68.3 4.4 9.5E-05 36.7 2.7 23 141-163 157-179 (312)
120 PRK15131 mannose-6-phosphate i 67.5 5.7 0.00012 36.9 3.4 22 141-162 236-257 (389)
121 PRK15186 AraC family transcrip 66.5 21 0.00045 31.8 6.7 46 117-169 39-84 (291)
122 PRK11161 fumarate/nitrate redu 65.4 57 0.0012 27.1 8.9 51 101-154 41-91 (235)
123 COG0664 Crp cAMP-binding prote 64.2 28 0.00061 27.7 6.6 57 97-156 23-79 (214)
124 PF06172 Cupin_5: Cupin superf 62.5 77 0.0017 25.1 11.1 76 95-174 41-123 (139)
125 COG3718 IolB Uncharacterized e 61.4 76 0.0016 27.8 8.7 86 79-168 16-103 (270)
126 PF13640 2OG-FeII_Oxy_3: 2OG-F 61.3 21 0.00045 25.6 4.8 66 100-165 4-86 (100)
127 PF07172 GRP: Glycine rich pro 56.8 11 0.00024 28.0 2.7 13 1-13 1-13 (95)
128 KOG4281 Uncharacterized conser 56.3 5.4 0.00012 34.2 1.0 42 92-133 72-113 (236)
129 TIGR00022 uncharacterized prot 56.1 74 0.0016 25.0 7.5 55 107-161 60-132 (142)
130 TIGR03697 NtcA_cyano global ni 54.8 41 0.00088 26.8 6.0 36 116-153 11-46 (193)
131 PRK10202 ebgC cryptic beta-D-g 54.7 87 0.0019 25.0 7.7 54 109-163 58-127 (149)
132 PRK09392 ftrB transcriptional 54.1 37 0.0008 28.3 5.8 51 99-153 32-82 (236)
133 KOG2131 Uncharacterized conser 53.7 15 0.00033 34.0 3.5 62 105-168 208-294 (427)
134 PF04074 DUF386: Domain of unk 53.2 50 0.0011 26.2 6.2 69 94-162 45-133 (153)
135 COG1741 Pirin-related protein 52.6 1.7E+02 0.0037 26.0 11.7 43 86-130 165-207 (276)
136 PRK13395 ureidoglycolate hydro 52.2 90 0.0019 25.8 7.5 67 109-175 72-141 (171)
137 COG2731 EbgC Beta-galactosidas 51.1 1.3E+02 0.0029 24.4 8.4 72 94-165 45-135 (154)
138 PHA00672 hypothetical protein 48.0 1.2E+02 0.0027 24.0 7.2 68 94-171 46-113 (152)
139 COG3717 KduI 5-keto 4-deoxyuro 46.7 1.1E+02 0.0025 26.8 7.5 87 89-180 171-263 (278)
140 PLN03192 Voltage-dependent pot 44.7 49 0.0011 33.6 5.9 52 97-152 397-448 (823)
141 PLN02288 mannose-6-phosphate i 41.5 20 0.00043 33.5 2.3 20 143-162 252-271 (394)
142 PF02787 CPSase_L_D3: Carbamoy 41.4 27 0.00059 27.1 2.8 26 196-221 72-97 (123)
143 PF06719 AraC_N: AraC-type tra 41.2 1.8E+02 0.0039 23.0 9.4 52 116-175 23-77 (155)
144 PF05721 PhyH: Phytanoyl-CoA d 39.6 48 0.001 26.2 4.1 30 140-169 178-208 (211)
145 KOG1417 Homogentisate 1,2-diox 38.3 3.1E+02 0.0068 25.0 9.5 63 108-178 147-209 (446)
146 PRK02290 3-dehydroquinate synt 36.8 1.1E+02 0.0024 28.1 6.3 85 74-164 250-336 (344)
147 PRK14585 pgaD putative PGA bio 36.7 39 0.00084 26.9 3.0 25 195-219 88-112 (137)
148 KOG0498 K+-channel ERG and rel 36.2 60 0.0013 32.8 4.9 47 102-152 447-493 (727)
149 PF13994 PgaD: PgaD-like prote 35.9 44 0.00095 26.3 3.2 24 196-219 100-123 (138)
150 PRK14584 hmsS hemin storage sy 35.4 45 0.00097 27.1 3.2 25 195-219 97-121 (153)
151 KOG1633 F-box protein JEMMA an 32.5 62 0.0013 33.0 4.3 67 100-170 141-224 (776)
152 PF13348 Y_phosphatase3C: Tyro 32.3 48 0.001 22.3 2.6 23 198-220 45-67 (68)
153 PF01959 DHQS: 3-dehydroquinat 31.7 1.5E+02 0.0032 27.5 6.2 86 74-165 260-347 (354)
154 PF13384 HTH_23: Homeodomain-l 31.6 52 0.0011 20.5 2.5 26 196-221 17-42 (50)
155 PF10365 DUF2436: Domain of un 31.3 65 0.0014 26.0 3.4 37 25-63 105-141 (161)
156 KOG1356 Putative transcription 30.0 19 0.00042 36.6 0.4 60 102-167 762-824 (889)
157 PF14801 GCD14_N: tRNA methylt 29.3 1.2E+02 0.0026 20.3 3.9 35 129-166 12-46 (54)
158 PF05962 HutD: HutD; InterPro 29.0 79 0.0017 26.1 3.8 33 116-156 135-167 (184)
159 TIGR02408 ectoine_ThpD ectoine 29.0 67 0.0014 28.1 3.5 38 143-180 212-251 (277)
160 PF01987 AIM24: Mitochondrial 24.6 1.4E+02 0.003 24.8 4.5 43 118-164 131-173 (215)
161 PRK15194 type-1 fimbrial prote 24.0 1.3E+02 0.0028 24.5 4.2 27 1-27 1-27 (185)
162 PF04202 Mfp-3: Foot protein 3 23.8 75 0.0016 22.2 2.2 25 1-26 1-25 (71)
163 PF01238 PMI_typeI: Phosphoman 23.7 60 0.0013 29.9 2.4 21 143-163 251-271 (373)
164 KOG0501 K+-channel KCNQ [Inorg 23.6 1.1E+02 0.0023 30.6 4.0 58 95-164 569-626 (971)
165 KOG2132 Uncharacterized conser 22.8 86 0.0019 28.8 3.1 82 83-165 238-349 (355)
166 PF08194 DIM: DIM protein; In 22.8 78 0.0017 19.4 1.9 10 40-50 24-33 (36)
167 PF00325 Crp: Bacterial regula 21.5 1E+02 0.0022 18.3 2.2 25 197-221 3-27 (32)
168 PRK05467 Fe(II)-dependent oxyg 20.8 2.8E+02 0.006 23.9 5.7 25 143-167 142-166 (226)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.96 E-value=6.1e-28 Score=219.92 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=146.4
Q ss_pred CcccCCCCCCCCCCeeeecCCCCCCccCCCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeC
Q 027345 46 GKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEG 125 (224)
Q Consensus 46 g~~ck~~~~~~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G 125 (224)
..+-+.+..-.++.|+|++...++.. ..|++++.++..+||+++ ++++++++++||+++++|||++++|+.||++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G 275 (367)
T TIGR03404 200 QEAVTGPAGEVPGPFTYHLSEQKPKQ--VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQG 275 (367)
T ss_pred cccCcCCCCCCCccEEEEhhhCCcee--cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEE
Confidence 34445566777788999998888744 678889999999999988 58999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCceeecchhhhcCCCCCCHHHHHhh
Q 027345 126 TLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPINPDFLGKA 205 (224)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~~f~~~p~~~~~vla~a 205 (224)
++++++.+++ ++.+++.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+.. +|++||+++
T Consensus 276 ~~~~~v~d~~---g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~ 348 (367)
T TIGR03404 276 QARMTVFAAG---GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAH 348 (367)
T ss_pred EEEEEEEecC---CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHH
Confidence 9999998765 455678999999999999999999999999999999999999999999998644 999999999
Q ss_pred cCCCHHHHHHHhhh
Q 027345 206 FQLDPNVVKDLQKK 219 (224)
Q Consensus 206 f~~~~~~v~~l~~~ 219 (224)
|+++++++++|++.
T Consensus 349 ~~~~~~~~~~l~~~ 362 (367)
T TIGR03404 349 LNLDDEVIDSLKKE 362 (367)
T ss_pred hCcCHHHHHhcccc
Confidence 99999999999975
No 2
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=2e-23 Score=195.37 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=124.5
Q ss_pred CCccCCCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcC
Q 027345 69 GNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNK 148 (224)
Q Consensus 69 ~~~~~~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~ 148 (224)
.++.++.+++++.++..++|+|+++++++.+++|.||++.+||||++|+|++||++|+++++++++++ ++++...|++
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g--~~vf~~~L~~ 399 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG--KTVFNGVLRP 399 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC--CEEEEEEEcC
Confidence 34557889999999999999999999999999999999999999999999999999999999998764 8899999999
Q ss_pred CCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCceeecc--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHhhhhc
Q 027345 149 GDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIA--DTVFGADPPINPDFLGKAFQLDPNVVKDLQKKFI 221 (224)
Q Consensus 149 GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~~f~~~p~~~~~vla~af~~~~~~v~~l~~~~~ 221 (224)
||+++||+|.+|..+. +++...+++...+.++-...++ .++|+. +|.+||+++|+++++++++||..+.
T Consensus 400 GdvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 400 GQLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred CCEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhccc
Confidence 9999999999997755 3455666654433332222221 578884 9999999999999999999998754
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=2.8e-23 Score=189.39 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=120.4
Q ss_pred CCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEE
Q 027345 74 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~ 153 (224)
..|++++.++..+||++++ +++.++++.||+++++|||. +.|++||++|++++++++++ ++.+.+.|++||+++
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~---g~~~~~~L~~GD~~~ 121 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN---GRNYIDDVGAGDLWY 121 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC---CcEEEeEECCCCEEE
Confidence 3588999999999999985 79999999999999999995 88999999999999999876 777777999999999
Q ss_pred EcCCCeEEEEeCCCccEEEEEEecCCC---CceeecchhhhcCCCCCCHHHHHhhcCCCHHHHHHHhhh
Q 027345 154 FPIGMIHFQFNIGKTNAVAFASLGSQF---PGVITIADTVFGADPPINPDFLGKAFQLDPNVVKDLQKK 219 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~~~~~~s~~---pg~~~~~~~~f~~~p~~~~~vla~af~~~~~~v~~l~~~ 219 (224)
||+|++|+++|.+ +.+.++++|++.. +.++.++.+ |++ +|++||+++|++|++++++|+++
T Consensus 122 fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 122 FPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred ECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCHHHHHhcccc
Confidence 9999999999995 5678888887653 567778887 464 99999999999999999999875
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.90 E-value=3.4e-23 Score=165.49 Aligned_cols=128 Identities=32% Similarity=0.471 Sum_probs=107.5
Q ss_pred ccCCCCceEEEecccCCCCCCccc-eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCC-----eEEEE
Q 027345 71 TANRLGFSVTNANVEQIPGLNTLG-ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNN-----TLIAK 144 (224)
Q Consensus 71 ~~~~~g~~v~~~~~~~~P~l~~~g-is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~-----~~~~~ 144 (224)
..+..+++++.++..++|.+.++. +.+.++.++||++.+|||| ++.|+.||++|+++++++.++ + +....
T Consensus 9 ~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~---~~~~~~~~~~~ 84 (144)
T PF00190_consen 9 RVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPG---GPQEEFRDFSQ 84 (144)
T ss_dssp EEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETT---CSSSEEEEEEE
T ss_pred cccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecC---Cccccceeeec
Confidence 335567789999999999666654 5555566799999999999 899999999999999999875 3 34455
Q ss_pred E--EcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCceeecchhhhcCCCCCCHHHHHhhcCCCHHHHH
Q 027345 145 V--LNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPINPDFLGKAFQLDPNVVK 214 (224)
Q Consensus 145 ~--L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~~f~~~p~~~~~vla~af~~~~~~v~ 214 (224)
+ +++||++++|+|.+||+.|.++++...+.+|++.+|..+ +|++|++++|++++++++
T Consensus 85 ~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 85 KVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp EEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred eeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 5 999999999999999999999888989989988888765 799999999999998763
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=3.3e-20 Score=148.51 Aligned_cols=135 Identities=39% Similarity=0.589 Sum_probs=116.1
Q ss_pred CCCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEE
Q 027345 73 NRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 73 ~~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
+..|++++.++...+|.+++.++.+.+++++||+..++|||+++.|++||++|++.+.+.++.+ ++.+.+.+++||++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~--~~~~~~~l~~GD~~ 85 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG--NKVYDARLREGDVF 85 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC--CeEEEEEecCCCEE
Confidence 4567779999999999999999999999999999999999988899999999999999876531 45668999999999
Q ss_pred EEcCCCeEEEEeCCCccEEEEEEecCCCCceee-c--chhhhcCCCCCCHHHHHhhcCCCHHHH
Q 027345 153 VFPIGMIHFQFNIGKTNAVAFASLGSQFPGVIT-I--ADTVFGADPPINPDFLGKAFQLDPNVV 213 (224)
Q Consensus 153 ~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~-~--~~~~f~~~p~~~~~vla~af~~~~~~v 213 (224)
++|+|..|++.|.+++++++++ +.+++|..-. + ..++|. ++++++++++|+++++++
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 9999999999999999999984 6667765421 1 235677 599999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.84 E-value=2.3e-19 Score=168.09 Aligned_cols=141 Identities=20% Similarity=0.314 Sum_probs=116.0
Q ss_pred CCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecC-CC---------------
Q 027345 74 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-QL--------------- 137 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~~--------------- 137 (224)
.-|+ ++..+..+-+.|.+.|+++.|++++|+|+.+||+| ++.+++||++|++.++++.++ ++
T Consensus 60 se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 3454 66777788999999999999999999999999999 599999999999999999642 00
Q ss_pred ------CCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCC--------Cceeecc----------------
Q 027345 138 ------NNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQF--------PGVITIA---------------- 187 (224)
Q Consensus 138 ------~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~--------pg~~~~~---------------- 187 (224)
+.....+.|++||++++|+|++||++|.|+++++++++++..+ +..+.++
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 0011236999999999999999999999999999998886443 2234343
Q ss_pred ---hhhhcCCCCCCHHHHHhhcCCCHHHHHHHhhh
Q 027345 188 ---DTVFGADPPINPDFLGKAFQLDPNVVKDLQKK 219 (224)
Q Consensus 188 ---~~~f~~~p~~~~~vla~af~~~~~~v~~l~~~ 219 (224)
.++|+ +++.++|+.||+++.+++++|+.+
T Consensus 218 ~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 218 HSGQNIFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccCchhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 24888 699999999999999999999854
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.79 E-value=1.5e-18 Score=145.39 Aligned_cols=151 Identities=21% Similarity=0.267 Sum_probs=132.6
Q ss_pred CCCCeeeecCCCCCCccCCCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcE--EEEEEeCEEEEEEEe
Q 027345 56 KAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATE--ILVVLEGTLYVGFVT 133 (224)
Q Consensus 56 ~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~E--i~yVl~G~~~~~~~~ 133 (224)
..+||+|..+.+.+.. .|+.+.......+|+- ....+.+.||++...||||+++| |.||++|++++.+..
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6789999988776544 2888999999999986 45678899999999999999998 999999999999988
Q ss_pred cCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCceeecchhhhcCCCCCCHHHHHhhcCCCHHHH
Q 027345 134 SNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITIADTVFGADPPINPDFLGKAFQLDPNVV 213 (224)
Q Consensus 134 ~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~~f~~~p~~~~~vla~af~~~~~~v 213 (224)
++ ++.++..+++||++++|++..|+..|+|++|++++.++....+....+..++++ .+..+++..++.+...+
T Consensus 121 ~~---G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~ 193 (209)
T COG2140 121 PE---GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYV 193 (209)
T ss_pred CC---CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccc
Confidence 76 678899999999999999999999999999999999999888888888888776 67778888888888888
Q ss_pred HHHhhhhc
Q 027345 214 KDLQKKFI 221 (224)
Q Consensus 214 ~~l~~~~~ 221 (224)
+.++.++.
T Consensus 194 D~p~~~~~ 201 (209)
T COG2140 194 DVPRIKFA 201 (209)
T ss_pred cCcccccc
Confidence 87776654
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.50 E-value=8.2e-14 Score=97.12 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=63.0
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEe
Q 027345 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASL 176 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~ 176 (224)
+++++||+..++|+|+...|++||++|++++.+.+ + ...+++||.+++|+|..|...|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~------~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG------E--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETT------E--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEcc------E--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 57899999999999996559999999999998532 2 6899999999999999999999999999999875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.43 E-value=1.6e-12 Score=101.95 Aligned_cols=86 Identities=27% Similarity=0.365 Sum_probs=73.8
Q ss_pred cCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEe
Q 027345 85 EQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 85 ~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
..++...+..+.+.++.++||+..++|+||...+.+||++|++++++.++ .+.+++||++++|+|..|+..|
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~--------~~~l~~Gd~i~ip~g~~H~~~a 104 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE--------KKELKAGDVIIIPPGVVHGLKA 104 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC--------ceEecCCCEEEECCCCeeeecc
Confidence 34555556678999999999999999999867899999999999998733 5899999999999999999999
Q ss_pred CCCccEEEEEEecC
Q 027345 165 IGKTNAVAFASLGS 178 (224)
Q Consensus 165 ~G~~~a~~~~~~~s 178 (224)
.++++...++++..
T Consensus 105 ~~~~~~~~l~v~~~ 118 (131)
T COG1917 105 VEDEPMVLLLVFPL 118 (131)
T ss_pred CCCCceeEEEEeee
Confidence 99888667766654
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2.4e-12 Score=100.98 Aligned_cols=82 Identities=28% Similarity=0.245 Sum_probs=73.7
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEE
Q 027345 93 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 93 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~ 172 (224)
...++.++.++||+...+|.|.+.+|++||++|++.+.+.+. ...|++||++++|+|..|.+.|.|..++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~--------~~~v~~gd~~~iP~g~~H~~~N~G~~~L~l 105 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE--------EVEVKAGDSVYIPAGTPHRVRNTGKIPLVL 105 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCcceEE
Confidence 468899999999999999999888999999999999998744 589999999999999999999999999999
Q ss_pred EEEecCCCCc
Q 027345 173 FASLGSQFPG 182 (224)
Q Consensus 173 ~~~~~s~~pg 182 (224)
+.+......+
T Consensus 106 iei~~p~~~~ 115 (127)
T COG0662 106 IEVQSPPYLG 115 (127)
T ss_pred EEEecCCcCC
Confidence 9987655443
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.42 E-value=2.6e-12 Score=100.82 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=70.1
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEE-EEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEE
Q 027345 93 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVG-FVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 171 (224)
Q Consensus 93 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~-~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~ 171 (224)
.++++.++.++||+..+.|+|. ..|++||++|++++. +.+. + ++.|++||++++|++..|.+.|. ++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~-~~E~~yVL~G~~~~~~i~~g-----~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~ 102 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKN-HLEAVYCIEGEGEVEDLATG-----E--VHPIRPGTMYALDKHDRHYLRAG--EDMR 102 (125)
T ss_pred CCEEEEEEEECCCCcccceeCC-CEEEEEEEeCEEEEEEcCCC-----E--EEEeCCCeEEEECCCCcEEEEcC--CCEE
Confidence 3689999999999999999997 479999999999998 5322 2 59999999999999999999997 8999
Q ss_pred EEEEecCCCCce
Q 027345 172 AFASLGSQFPGV 183 (224)
Q Consensus 172 ~~~~~~s~~pg~ 183 (224)
++++++.+-+|.
T Consensus 103 ~l~v~tP~~~~~ 114 (125)
T PRK13290 103 LVCVFNPPLTGR 114 (125)
T ss_pred EEEEECCCCCCc
Confidence 999988665554
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.34 E-value=2.3e-11 Score=101.86 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=75.4
Q ss_pred CCCccceEEEEEEEcCCCc------CCCccCCCC--cEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeE
Q 027345 89 GLNTLGISAVRIDYAPYGQ------NPPHTHPRA--TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIH 160 (224)
Q Consensus 89 ~l~~~gis~~~v~l~pgg~------~ppH~Hp~a--~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H 160 (224)
.++..++.+....+.||.. .+.|+|++. .|+.||++|++.+.+.+.+ +......+++||++++|+|..|
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~---G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE---GEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC---CcEEEEEECCCCEEEECCCCcE
Confidence 3555679999999999986 677999855 4999999999999987664 3455789999999999999999
Q ss_pred EEEeCCCccEEEEEEecCC
Q 027345 161 FQFNIGKTNAVAFASLGSQ 179 (224)
Q Consensus 161 ~~~N~G~~~a~~~~~~~s~ 179 (224)
...|.|++++++++++...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999988643
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.29 E-value=2.1e-11 Score=97.93 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=74.6
Q ss_pred cCCCCCCccceEEEEEEEcCCCc-CCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCC--CeEE
Q 027345 85 EQIPGLNTLGISAVRIDYAPYGQ-NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG--MIHF 161 (224)
Q Consensus 85 ~~~P~l~~~gis~~~v~l~pgg~-~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G--~~H~ 161 (224)
..+-||...|+.+ ..++||+. ...|||...+|++||++|++++.+.+. .+.|++||++-||+| ..|.
T Consensus 34 G~~~Gl~~fGvn~--~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--------e~~lrpGD~~gFpAG~~~aHh 103 (161)
T COG3837 34 GDALGLKRFGVNL--EIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--------ETRLRPGDSAGFPAGVGNAHH 103 (161)
T ss_pred hhhcChhhcccce--EEeCCCCccccccccccCceEEEEEcCceEEEECCe--------eEEecCCceeeccCCCcceeE
Confidence 4566777555554 45899985 688999999999999999999987654 489999999999999 9999
Q ss_pred EEeCCCccEEEEEEecCCCCceeec
Q 027345 162 QFNIGKTNAVAFASLGSQFPGVITI 186 (224)
Q Consensus 162 ~~N~G~~~a~~~~~~~s~~pg~~~~ 186 (224)
+.|.|+..++.+++-+-..-..+..
T Consensus 104 liN~s~~~~~yL~vG~r~~~d~i~Y 128 (161)
T COG3837 104 LINRSDVILRYLEVGTREPDDIITY 128 (161)
T ss_pred EeecCCceEEEEEeccccccceeec
Confidence 9999999999998765444344443
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.21 E-value=4e-10 Score=98.95 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=81.7
Q ss_pred CCCCCCCCCeeeecCCCCCCccCCCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCC-CCcEEEEEEeCEEEE
Q 027345 51 DPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHP-RATEILVVLEGTLYV 129 (224)
Q Consensus 51 ~~~~~~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~~ 129 (224)
+.+.+++++.+.+.+..-. +..++.... |. .+..+.+.+++++||+....|.|+ ...|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~~------~~~~~~L~~---~~-~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGWE------NTRAWVLAR---PG-LGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCCC------CeEEEEEeC---CC-CCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 3455566666666553222 223333322 22 234689999999999987777765 458999999999999
Q ss_pred EEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEec
Q 027345 130 GFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLG 177 (224)
Q Consensus 130 ~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~ 177 (224)
.+.++ ++.|++||.++||++..|.++|.|+++++++++..
T Consensus 97 ~~~g~--------~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 97 TLEGK--------THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EECCE--------EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 97543 69999999999999999999999999999998753
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.18 E-value=2.6e-10 Score=94.56 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=65.4
Q ss_pred cceEEEEEEEcCCCcC-CCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEE
Q 027345 93 LGISAVRIDYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 171 (224)
Q Consensus 93 ~gis~~~v~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~ 171 (224)
..+.+.+..++||+.. +.|+|+ +.|++||++|++++.+.++ .+.|++||.++||++.+|.+.|.++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~~--------~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~ 175 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTINGQ--------DYHLVAGQSYAINTGIPHSFSNTSAGICR 175 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECCE--------EEEecCCCEEEEcCCCCeeeeCCCCCCeE
Confidence 3467777889999864 567786 7999999999999998643 58999999999999999999999999999
Q ss_pred EEEEec
Q 027345 172 AFASLG 177 (224)
Q Consensus 172 ~~~~~~ 177 (224)
++++..
T Consensus 176 ~l~~~~ 181 (185)
T PRK09943 176 IISAHT 181 (185)
T ss_pred EEEEeC
Confidence 998754
No 16
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.18 E-value=1.9e-10 Score=108.27 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=71.0
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
++.+.+++++||+..++|+|++..|.+||++|++++.+.++ ++.|++||++++|+|..|.+.|.|+++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~--------~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i 446 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE--------TLLLTENESTYIPLGVIHRLENPGKIPLELI 446 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 68899999999999899999888999999999999998644 5899999999999999999999999999999
Q ss_pred EEecCC
Q 027345 174 ASLGSQ 179 (224)
Q Consensus 174 ~~~~s~ 179 (224)
++...+
T Consensus 447 ~v~~~~ 452 (468)
T TIGR01479 447 EVQSGS 452 (468)
T ss_pred EEEcCC
Confidence 987543
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.15 E-value=3e-10 Score=107.16 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=70.1
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEE
Q 027345 93 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 93 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~ 172 (224)
.++.+.+++++||+....|+|...+|++||++|++++.+.++ ++.|++||.++||+|.+|.++|.|++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~--------~~~L~~GDSi~ip~g~~H~~~N~g~~~l~i 454 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD--------IKLLGENESIYIPLGATHCLENPGKIPLDL 454 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCCCEEE
Confidence 368889999999998888888778899999999999998654 699999999999999999999999999999
Q ss_pred EEEec
Q 027345 173 FASLG 177 (224)
Q Consensus 173 ~~~~~ 177 (224)
+++..
T Consensus 455 I~V~~ 459 (478)
T PRK15460 455 IEVRS 459 (478)
T ss_pred EEEEc
Confidence 99864
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.09 E-value=1e-09 Score=88.74 Aligned_cols=77 Identities=26% Similarity=0.225 Sum_probs=70.3
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEE
Q 027345 93 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 93 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~ 172 (224)
.+..+-++.+.||....+|.|.+..|..+|++|++.+.+.+. .+.+++||.+++|+|..|.+.|.|+.++++
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~--------~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~ 132 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE--------EFTLKEGDSVYIPRGAKHRIENPGKTPLEI 132 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE--------EEEEcCCCEEEECCCCEEEEECCCCcCcEE
Confidence 367899999999999999999999999999999999998543 589999999999999999999999999999
Q ss_pred EEEec
Q 027345 173 FASLG 177 (224)
Q Consensus 173 ~~~~~ 177 (224)
+-+-.
T Consensus 133 IEVq~ 137 (151)
T PF01050_consen 133 IEVQT 137 (151)
T ss_pred EEEec
Confidence 87653
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.7e-09 Score=83.28 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=73.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
+|.+-.++++||+..-.|-|..-+-.+||++|+...++++.- .+..+.++||.+|||+|++|.-.|.+++++.++
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rL-----E~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRL-----EEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccce-----eeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 688999999999999999999778889999999999987432 246789999999999999999999999999998
Q ss_pred EEecCCCCc
Q 027345 174 ASLGSQFPG 182 (224)
Q Consensus 174 ~~~~s~~pg 182 (224)
.+-+..+|.
T Consensus 120 IaRsDp~~~ 128 (142)
T COG4101 120 IARSDPNPQ 128 (142)
T ss_pred EEccCCCCC
Confidence 888766654
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.02 E-value=2.2e-09 Score=94.05 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=63.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
++.+.+++++||+..+.|.|...+|..||++|++.+.+.++ ...+++||++++|++.+|+++|.|+++.+++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~--------~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN--------WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE--------EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 57888899999999996444347899999999999987543 6899999999999999999999999999887
Q ss_pred E
Q 027345 174 A 174 (224)
Q Consensus 174 ~ 174 (224)
.
T Consensus 250 ~ 250 (260)
T TIGR03214 250 L 250 (260)
T ss_pred E
Confidence 4
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.99 E-value=5.8e-09 Score=91.34 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=65.5
Q ss_pred ceEEEEEEEcCCCcC-CCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEE
Q 027345 94 GISAVRIDYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 94 gis~~~v~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~ 172 (224)
.+.+.+++++||+.. .+|+|+..+|++||++|++++.+.++ ++.|++||.+++|+|..|.++|.+++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~--------~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE--------THELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE--------EEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 588999999998754 45667755899999999999987543 589999999999999999999999999999
Q ss_pred EEEec
Q 027345 173 FASLG 177 (224)
Q Consensus 173 ~~~~~ 177 (224)
+++-.
T Consensus 129 l~v~k 133 (260)
T TIGR03214 129 FLYKK 133 (260)
T ss_pred EEEEe
Confidence 87653
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.96 E-value=5.2e-09 Score=91.89 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=65.2
Q ss_pred ceEEEEEEEcCCCcCCCc-cCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEE
Q 027345 94 GISAVRIDYAPYGQNPPH-THPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH-~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~ 172 (224)
.+.+.+++++||+..+.| +|. .+|.+||++|++++.+.++ .+.|++||+++|+++..|+++|.|++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~~~--------~~~l~~GD~i~~~~~~~h~~~N~g~~~~~y 253 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLNND--------WVEVEAGDFIWMRAYCPQACYAGGPGPFRY 253 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEECCE--------EEEeCCCCEEEECCCCCEEEECCCCCcEEE
Confidence 468899999999998885 564 8899999999999987543 689999999999999999999999999998
Q ss_pred EEEe
Q 027345 173 FASL 176 (224)
Q Consensus 173 ~~~~ 176 (224)
+..-
T Consensus 254 l~~k 257 (266)
T PRK11171 254 LLYK 257 (266)
T ss_pred EEEc
Confidence 8643
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.79 E-value=7.9e-08 Score=76.84 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=62.2
Q ss_pred CCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCC-CCeEEEEEEcCCCEEEEcCCCeEEEEeC
Q 027345 87 IPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 87 ~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
.-|++ .+.+..-++.||...|.|.|. .+|+++|++|+++..+...... .++...+.+.+++.+.||.+..|.+.|+
T Consensus 38 ~hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT 114 (167)
T PF02041_consen 38 LHGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNT 114 (167)
T ss_dssp HH--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred hcCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecC
Confidence 45666 468888899999999999997 8999999999999988754300 1455689999999999999999999999
Q ss_pred C-CccEEEEEEecCCCCceeecchhh
Q 027345 166 G-KTNAVAFASLGSQFPGVITIADTV 190 (224)
Q Consensus 166 G-~~~a~~~~~~~s~~pg~~~~~~~~ 190 (224)
+ .+++.++++.+...-..+.+.+|.
T Consensus 115 ~e~eDlqvlViiSrpPvkvf~y~dw~ 140 (167)
T PF02041_consen 115 NEHEDLQVLVIISRPPVKVFIYDDWS 140 (167)
T ss_dssp -SSS-EEEEEEEESSS--EEEESSTT
T ss_pred CCCcceEEEEEecCCCeEEEEecccc
Confidence 9 588999887765544666666663
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.72 E-value=9.1e-08 Score=78.95 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=55.9
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEE
Q 027345 100 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~ 175 (224)
+.=.||....+|+|+ ++|++|+++|++.+.+.+. ++.....|++||++++|+|+.|..+.. +..+.+.+
T Consensus 39 vvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 39 VVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED----GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEccCCcccccccCC-CceEEEEECCeEEEEEEcC----CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 334778888999998 8999999999999999875 454579999999999999999988663 44444444
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.69 E-value=1.4e-07 Score=76.62 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=50.8
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
.||....+|.|+ .+|++|+++|++.+.+.+. ++.....|++||++++|+|+.|.....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE----GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC----CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 566667899998 8999999999999998765 45557999999999999999998876433
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.66 E-value=3.3e-07 Score=76.25 Aligned_cols=86 Identities=24% Similarity=0.235 Sum_probs=57.1
Q ss_pred CCccceEEEEEEEcCCCc------CCCccCCC------CcEEEEEEeCEEEEEEEecCCCCC----eEEEEEEcCCCEEE
Q 027345 90 LNTLGISAVRIDYAPYGQ------NPPHTHPR------ATEILVVLEGTLYVGFVTSNQLNN----TLIAKVLNKGDVFV 153 (224)
Q Consensus 90 l~~~gis~~~v~l~pgg~------~ppH~Hp~------a~Ei~yVl~G~~~~~~~~~~~~~~----~~~~~~L~~GDv~~ 153 (224)
+...++......+.||.+ .-=|+|+. -.|+.+|++|++.+-+-+.+ + +.+...+++||+++
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~---~~~~~~~~~v~~~~G~~v~ 121 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE---GDDVGDVIAVEAKPGDVVY 121 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT---S-----EEEEEE-TTEEEE
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC---CCcceeEEEEEeCCCCEEE
Confidence 344467888888889753 35599997 68999999999999988765 4 67789999999999
Q ss_pred EcCCCeEEEEeCCCccEEEEEEecC
Q 027345 154 FPIGMIHFQFNIGKTNAVAFASLGS 178 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~~~~~~s 178 (224)
||++..|...|+|++++++.+...+
T Consensus 122 IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 122 IPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp E-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred ECCCceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999998877753
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.56 E-value=6.4e-07 Score=65.72 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=55.3
Q ss_pred ceEEEEEEEcCCCcCCC-ccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEE
Q 027345 94 GISAVRIDYAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 94 gis~~~v~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~ 172 (224)
.++...++|+||+.-++ +.+ +..-++||++|.+++.+.++ ++.+.+||++++|+|=.-.++|.+++++++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~~~--------~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~L 81 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIHET--------SFVVTKGGSFQVPRGNYYSIKNIGNEEAKL 81 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEETTE--------EEEEETT-EEEE-TT-EEEEEE-SSS-EEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEcCc--------EEEEeCCCEEEECCCCEEEEEECCCCcEEE
Confidence 46788999999997655 555 47889999999999998643 589999999999999999999999999998
Q ss_pred EEE
Q 027345 173 FAS 175 (224)
Q Consensus 173 ~~~ 175 (224)
+.+
T Consensus 82 fF~ 84 (85)
T PF11699_consen 82 FFV 84 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 753
No 28
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.49 E-value=5.2e-07 Score=77.00 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=63.3
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEE
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~ 174 (224)
..+..+.++||+.+|.|.|. +.|+.+|++|+.. ++. ..+.+||++..|.|..|...+.+++++++++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de~--------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DET--------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLA 193 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cCC--------CccCCCeEEECCCCCCcCcccCCCCCeEEEE
Confidence 46677889999999999996 8999999999953 442 4689999999999999999999999999999
Q ss_pred EecCCC
Q 027345 175 SLGSQF 180 (224)
Q Consensus 175 ~~~s~~ 180 (224)
+.+.+-
T Consensus 194 v~dapl 199 (215)
T TIGR02451 194 VLDAPL 199 (215)
T ss_pred EecCCc
Confidence 887543
No 29
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.49 E-value=6.9e-07 Score=67.99 Aligned_cols=64 Identities=27% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEe
Q 027345 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASL 176 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~ 176 (224)
++-..++|+|+ .-|+.||++|++++.+.++ .+.+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~~~--------~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHIDGQ--------EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEETTE--------EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEECCE--------EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 44566899998 8999999999999987543 5999999999999999999988887677666554
No 30
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.47 E-value=5.9e-07 Score=66.23 Aligned_cols=66 Identities=26% Similarity=0.387 Sum_probs=52.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
|..+..++++||+..|.|.|+ +.|.+|||+|++.. .+ ..+.+||.++.|+|..|.... ++.+.++
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~--------~~~~~G~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD--------GRYGAGDWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT--------CEEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC--------ccCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence 567888999999999999998 78888999999972 22 356999999999999999884 5666665
Q ss_pred E
Q 027345 174 A 174 (224)
Q Consensus 174 ~ 174 (224)
.
T Consensus 88 v 88 (91)
T PF12973_consen 88 V 88 (91)
T ss_dssp E
T ss_pred E
Confidence 4
No 31
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.37 E-value=4.4e-06 Score=71.59 Aligned_cols=70 Identities=20% Similarity=0.107 Sum_probs=50.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
.++...+.++- .. .+||-+..|+.||++|++++.+.++ ++.+++||++++|+|..|.+...+ .++++
T Consensus 156 ~m~aGf~~~~~-~s--f~wtl~~dEi~YVLEGe~~l~IdG~--------t~~l~pGDvlfIPkGs~~hf~tp~--~aRfl 222 (233)
T PRK15457 156 SMAAGFMQWEN-AF--FPWTLNYDEIDMVLEGELHVRHEGE--------TMIAKAGDVMFIPKGSSIEFGTPS--SVRFL 222 (233)
T ss_pred ceeeEEEEEec-Cc--cceeccceEEEEEEEeEEEEEECCE--------EEEeCCCcEEEECCCCeEEecCCC--CeeEE
Confidence 35555555554 33 3466668999999999999998533 699999999999999995554443 56655
Q ss_pred EEe
Q 027345 174 ASL 176 (224)
Q Consensus 174 ~~~ 176 (224)
++.
T Consensus 223 yV~ 225 (233)
T PRK15457 223 YVA 225 (233)
T ss_pred EEE
Confidence 544
No 32
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.36 E-value=1.8e-06 Score=76.82 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=50.7
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
+...-.|..+.++|||. .-|+.|+++|++.+.+.+. .+.+++||++++++|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~g~--------~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLINNE--------KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEECCE--------EEEEcCCcEEEEecCCcccccccCC
Confidence 33446777889999997 8999999999999887533 5899999999999999998765544
No 33
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.34 E-value=5.4e-06 Score=67.53 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=50.6
Q ss_pred cCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCc
Q 027345 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPG 182 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg 182 (224)
....|.|. .+|+-|+++|++.+.+...+ ++.....+++||.+++|+|+.||+.-..+....++=.| ...||
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~---~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF-~~~~g 154 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGD---DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLF-KDEPG 154 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TT---CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEE-SSCGG
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCC---CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEee-cCCCC
Confidence 34789998 79999999999999998775 55556899999999999999999975545556665444 34444
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.16 E-value=2e-05 Score=64.42 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=60.4
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCceeec
Q 027345 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGVITI 186 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~ 186 (224)
.-|.|. ..|+-|++.|.+.+.+...+ ++++.....+||.+.+|+|+-||+.-..+...+++=.| ...+|.+-+
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d---~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF-~~~~gWVa~ 161 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPD---GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF-TEPEGWVAI 161 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCC---CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe-eCCCCceee
Confidence 569997 89999999999999999886 78999999999999999999999976555556665444 467777643
No 35
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.15 E-value=5.8e-06 Score=74.88 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=63.7
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
.|.+..-.+.||...++|-|. +.-+.||++|++....++. + ...+++||+++.|++..|...|.|++++..+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~g-----~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wl 151 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVDG-----E--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWL 151 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEECC-----E--EEeeeCCCEEEeCCCeeEecccCCCCcEEEE
Confidence 345555679999999999997 8999999999996555543 2 5899999999999999999999999997776
Q ss_pred EEec
Q 027345 174 ASLG 177 (224)
Q Consensus 174 ~~~~ 177 (224)
..++
T Consensus 152 d~lD 155 (335)
T TIGR02272 152 DGLD 155 (335)
T ss_pred ecCC
Confidence 6654
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.14 E-value=1.6e-05 Score=69.24 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=44.0
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeC
Q 027345 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
+...++|||. ..|++||++|++.+.+.+. .+.+.+||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~--------~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEINGK--------RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEECCE--------EEEECCCcEEEeCCCCccceeee
Confidence 4456899996 8999999999999887533 58999999999999999966543
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.12 E-value=4.1e-05 Score=59.74 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=72.7
Q ss_pred CccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccE
Q 027345 91 NTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNA 170 (224)
Q Consensus 91 ~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a 170 (224)
.+.|+|+-.-.+.+|.....|+-. .-|-+||++|++++.-.+. ++ .+.++||.++...+.-.|+.+... ++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~----G~--~~~i~pGt~YaLd~hD~H~lra~~--dm 101 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT----GE--VHPIKPGTMYALDKHDRHYLRAKT--DM 101 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC----Cc--EEEcCCCeEEecCCCccEEEEecC--CE
Confidence 456899999999999999999875 7999999999999987654 34 699999999999999999998754 99
Q ss_pred EEEEEecCCCCce
Q 027345 171 VAFASLGSQFPGV 183 (224)
Q Consensus 171 ~~~~~~~s~~pg~ 183 (224)
+++|+||.+--|.
T Consensus 102 ~~vCVFnPpltG~ 114 (126)
T PF06339_consen 102 RLVCVFNPPLTGR 114 (126)
T ss_pred EEEEEcCCCCcCc
Confidence 9999998766554
No 38
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.09 E-value=2.2e-05 Score=62.00 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=44.8
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCC-EEEEcCCCeEEEEeCCCccEEEEEEecCC
Q 027345 102 YAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGD-VFVFPIGMIHFQFNIGKTNAVAFASLGSQ 179 (224)
Q Consensus 102 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GD-v~~~P~G~~H~~~N~G~~~a~~~~~~~s~ 179 (224)
.++|..+.+|+|....|+++|++|+..+.+.+.. +...+.|...+ ++.+|+|+.|.+.|.+.. +++++ +.+.
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~----~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR----EEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-----EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEE-EESS
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCC----CcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEE-EcCC
Confidence 4455568999999999999999999999987653 33567787775 999999999999999877 66664 5544
No 39
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.08 E-value=1.3e-05 Score=70.38 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=49.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
.+.+.+ ..+....++|||. ..|++||++|++++.+.+. .+.+++||++++|+|.+|.+...++
T Consensus 19 ~~~~~~--~~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~~~--------~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTHQ-FCEIVIVWRGNGLHVLNDH--------PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred ceEEec--CCCCCCCcccccc-ceeEEEEecCceEEEECCe--------eeeecCCeEEEEcCCCcccccccCC
Confidence 345444 2444457799996 8999999999999987543 5999999999999999999876543
No 40
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.03 E-value=9.4e-06 Score=71.85 Aligned_cols=116 Identities=18% Similarity=0.146 Sum_probs=88.3
Q ss_pred CCCCCCeeeecC----CCCCCccCCCCceEEEecccCCCCCCccc-----eEEEEEEEcCCCcCCCccCCCCcEEEEEEe
Q 027345 54 LAKAEDFFLSGL----DKPGNTANRLGFSVTNANVEQIPGLNTLG-----ISAVRIDYAPYGQNPPHTHPRATEILVVLE 124 (224)
Q Consensus 54 ~~~~~df~~~~~----~~~~~~~~~~g~~v~~~~~~~~P~l~~~g-----is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~ 124 (224)
...+.-|.|.-+ -+.+..-...++ ++.+-..+-|+|++.. +....--+.||...|.|.|. .+-+-||++
T Consensus 43 ~~vp~lW~~~~ir~ll~~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvve 120 (351)
T COG3435 43 DCVPALWKYEEIRPLLLRSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVE 120 (351)
T ss_pred ccccccccHHHHHHHHHHhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEe
Confidence 344555666532 233443233443 7788888899998874 22333358999999999997 899999999
Q ss_pred CEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecC
Q 027345 125 GTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGS 178 (224)
Q Consensus 125 G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s 178 (224)
|++-++.++.. ...+++||.++-|++..|..-|.|.+|++.+-.++.
T Consensus 121 G~Ga~T~VdGe-------r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 121 GKGAYTVVDGE-------RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred ccceeEeecCc-------eeeccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 99988888753 478999999999999999999999999998877753
No 41
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.02 E-value=2.5e-05 Score=69.76 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=46.6
Q ss_pred CCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
|....++|||+ .-|++||++|++.+.+.+. .+.+++||++++|+|..|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~~--------~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLNDR--------PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEECCE--------EEeecCCeEEEECCCCeecccccCC
Confidence 44457899997 8999999999999887543 5999999999999999999876544
No 42
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.99 E-value=2e-05 Score=68.79 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=48.5
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
+...++|||.+.-|++|+++|++.+.+.+. .+.+++||++++|+|..|.+...++....++
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~~--------~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDEH--------EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECCE--------EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 346899999756899999999999877532 5899999999999999999876554443333
No 43
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.93 E-value=3.4e-05 Score=61.10 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=52.0
Q ss_pred CCc-CCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEe
Q 027345 105 YGQ-NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASL 176 (224)
Q Consensus 105 gg~-~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~ 176 (224)
|++ .--|+|..+.|++.|++|+..+.+.++. +. ...+.+||++++|+|+-|.- +....+..++.++
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~---G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY 118 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD---GQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY 118 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCC---Cc--eeeecCCCEEEEecCccccc-ccCCCCeEEEccc
Confidence 443 3458999999999999999999998876 44 57899999999999999964 4445555555554
No 44
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.87 E-value=4.3e-05 Score=66.24 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeC
Q 027345 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
+....++|||. .-|++||++|++++.+.+. .+.+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~--------~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNGQ--------PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecCC--------cccccCCcEEEECCCccchhhhc
Confidence 44567899996 8999999999999988654 48999999999999999987654
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.83 E-value=8e-05 Score=64.94 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=47.0
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 102 YAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 102 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
..|....++|||. .-|++||++|++++.+.+. .+.+++||++++|+|.+|.+...++
T Consensus 25 ~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~~--------~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 25 RYPQDVFAEHTHE-FCELVMVWRGNGLHVLNER--------PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCCccccc-eEEEEEEecCcEEEEECCE--------EEeecCCcEEEECCCCcccccccCC
Confidence 3455557899997 8999999999999887533 5899999999999999998765443
No 46
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.83 E-value=3.7e-05 Score=67.02 Aligned_cols=73 Identities=29% Similarity=0.354 Sum_probs=47.2
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEE
Q 027345 93 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 93 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~ 172 (224)
.|-+..|+.+++|-..|||+|. .++-+|||+|.+..+ + .+....-|.+|..+..|+|..|+....+.+.+.+
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~-----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~ 105 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D-----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLF 105 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T-----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C-----CcccceecCCCceEeccCCCceeeeccCccEEEE
Confidence 3778999999999999999997 899999999987753 2 2223467999999999999999887666655544
Q ss_pred E
Q 027345 173 F 173 (224)
Q Consensus 173 ~ 173 (224)
+
T Consensus 106 ~ 106 (251)
T PF14499_consen 106 I 106 (251)
T ss_dssp E
T ss_pred E
Confidence 4
No 47
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.79 E-value=6e-05 Score=53.63 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=43.1
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEE
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
++....+..||. .+.++. ..|++|||+|++++...+ +. +.++++||.+++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~~-----G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDED-----GE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEETT-----TE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEECC-----CC--EEEEcCCcEEEECCCCEEEEE
Confidence 556666777865 334444 499999999999988532 33 589999999999999865543
No 48
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.76 E-value=0.00024 Score=60.49 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=64.5
Q ss_pred eEEEEEEEcCCC-cCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 95 ISAVRIDYAPYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 95 is~~~v~l~pgg-~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
++-..+++.|+| ...+-.-++++-++||++|++.+.+.++ ++.|++|+..++|+|..|.++|...+++++.
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~--------th~l~eggyaylPpgs~~~~~N~~~~~~rfh 132 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK--------THALREGGYAYLPPGSGWTLRNAQKEDSRFH 132 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe--------EEEeccCCeEEeCCCCcceEeeccCCceEEE
Confidence 455668898877 6677777888999999999999998654 6999999999999999999999999999998
Q ss_pred EEec
Q 027345 174 ASLG 177 (224)
Q Consensus 174 ~~~~ 177 (224)
++-.
T Consensus 133 w~rk 136 (264)
T COG3257 133 WIRK 136 (264)
T ss_pred EEee
Confidence 7753
No 49
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.74 E-value=5.9e-05 Score=61.35 Aligned_cols=57 Identities=30% Similarity=0.435 Sum_probs=49.4
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCc
Q 027345 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~ 168 (224)
.+.|.|+ .+||-||++|++++-+-+.+ ++....-+++||.+++|+|+-|.+.-..+.
T Consensus 86 fEEhlh~-deeiR~il~GtgYfDVrd~d---d~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 86 FEEHLHE-DEEIRYILEGTGYFDVRDKD---DQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHhcCc-hhheEEEeecceEEeeccCC---CCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 4789998 79999999999999998876 677788899999999999999998654433
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.71 E-value=0.00046 Score=55.48 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=50.2
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEec
Q 027345 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLG 177 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~ 177 (224)
..+.=.|+...-.|.-+ ++|++|-++|...+.+.++ ++.....+++||++..|++++|.-+-.. ..+.+++-.
T Consensus 36 VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~----g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr 108 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED----GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIER 108 (151)
T ss_dssp EEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET----TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE
T ss_pred EEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC----CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEe
Confidence 33445777778889998 8999999999999999886 6777899999999999999999876653 344444443
Q ss_pred CCCCce
Q 027345 178 SQFPGV 183 (224)
Q Consensus 178 s~~pg~ 183 (224)
...+|.
T Consensus 109 ~R~~~~ 114 (151)
T PF06052_consen 109 KRPEGE 114 (151)
T ss_dssp ---TTS
T ss_pred ccCCCC
Confidence 344443
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.54 E-value=0.00039 Score=63.10 Aligned_cols=87 Identities=18% Similarity=0.093 Sum_probs=64.6
Q ss_pred CceEEEecccCCC-CCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEE
Q 027345 76 GFSVTNANVEQIP-GLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 76 g~~v~~~~~~~~P-~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 154 (224)
|-.+..++..+-+ .+.+++..+ ..+.+|....+|-|. .+.+++|++|+++..+.+. ++..++||+|++
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig~~--------~~~W~~gD~f~v 300 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIGDA--------VFRFSPKDVFVV 300 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEECCE--------EEEecCCCEEEE
Confidence 4456666655544 344455444 447888899999996 8999999999999998543 589999999999
Q ss_pred cCCCeEEEEeCCCccEEEEEE
Q 027345 155 PIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 155 P~G~~H~~~N~G~~~a~~~~~ 175 (224)
|.-..|...|. +++.++.+
T Consensus 301 PsW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 301 PSWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CCCCcEecccC--CCeEEEEe
Confidence 99988877664 45655543
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.32 E-value=0.00087 Score=54.29 Aligned_cols=68 Identities=25% Similarity=0.158 Sum_probs=44.9
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEE
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~ 174 (224)
++...++++.. +.-|.-.-+|+.||++|++++... ++ ++..++||+++||+|.--.+.-. ..++++.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~------G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Y 143 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID------GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFY 143 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET------TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC------CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEE
Confidence 45555666653 345776679999999999988743 23 68999999999999987655432 3455544
Q ss_pred E
Q 027345 175 S 175 (224)
Q Consensus 175 ~ 175 (224)
+
T Consensus 144 v 144 (152)
T PF06249_consen 144 V 144 (152)
T ss_dssp E
T ss_pred E
Confidence 4
No 53
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.19 E-value=0.004 Score=50.30 Aligned_cols=69 Identities=25% Similarity=0.188 Sum_probs=50.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
.+++..+++++ ...|+-- +-+|+-||+||++.+...+. +..-.+||++++|.|.---+--.|. +.++
T Consensus 99 ~l~aG~m~~~~-~tf~wtl--~yDe~d~VlEGrL~V~~~g~--------tv~a~aGDvifiPKgssIefst~ge--a~fl 165 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWTL--NYDEIDYVLEGRLHVRIDGR--------TVIAGAGDVIFIPKGSSIEFSTTGE--AKFL 165 (176)
T ss_pred ccccceeeecc-ccCccee--cccceeEEEeeeEEEEEcCC--------eEecCCCcEEEecCCCeEEEeccce--EEEE
Confidence 35566666777 5555543 46899999999999987654 4789999999999998776654443 5554
Q ss_pred EE
Q 027345 174 AS 175 (224)
Q Consensus 174 ~~ 175 (224)
.+
T Consensus 166 yv 167 (176)
T COG4766 166 YV 167 (176)
T ss_pred EE
Confidence 43
No 54
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.0034 Score=51.89 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCCcCCCccCCCC-cEEEEEEeCEEEEEEEecCCCC---CeEEEEEEcCC--CEEEEcCCCeEEEEeCCCccEEEEEE
Q 027345 104 PYGQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLN---NTLIAKVLNKG--DVFVFPIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 104 pgg~~ppH~Hp~a-~Ei~yVl~G~~~~~~~~~~~~~---~~~~~~~L~~G--Dv~~~P~G~~H~~~N~G~~~a~~~~~ 175 (224)
||-++.+|+|.+. .+++.|++|++....++-..++ ++....+|.+- ..+++|+|..|.+++.+++..+++.+
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~ 131 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKV 131 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEe
Confidence 8889999999887 8999999999988887743211 24556677765 79999999999999999887544443
No 55
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.89 E-value=0.019 Score=47.58 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=56.5
Q ss_pred cCCCcCCCccCC--CCcEEEEEEeCEEEEEEEecCCCC---CeEEEEEEcC--CCEEEEcCCCeEEEEeCCCccEEEEEE
Q 027345 103 APYGQNPPHTHP--RATEILVVLEGTLYVGFVTSNQLN---NTLIAKVLNK--GDVFVFPIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 103 ~pgg~~ppH~Hp--~a~Ei~yVl~G~~~~~~~~~~~~~---~~~~~~~L~~--GDv~~~P~G~~H~~~N~G~~~a~~~~~ 175 (224)
.+|.++.+|.|. ....++.|++|++..-++|-.+++ ++.....|.+ +..++||+|..|.+...+++ +.++..
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 368999999999998888854321 4566778887 55999999999999999866 444433
Q ss_pred e
Q 027345 176 L 176 (224)
Q Consensus 176 ~ 176 (224)
.
T Consensus 131 ~ 131 (176)
T TIGR01221 131 C 131 (176)
T ss_pred C
Confidence 3
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.83 E-value=0.0022 Score=49.65 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=44.6
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
.+......--||. +|++-...|++++|+|++++.-.+ ++ ...+++||.++||+|..=.++
T Consensus 44 ~~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~-----Ge--~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 44 QVETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDG-----GE--PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred CeeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCC-----Ce--EEEEcCCCEEEECCCCeEEEE
Confidence 3555556666664 455656799999999999977432 33 589999999999999876554
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.81 E-value=0.028 Score=46.42 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=56.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCC-CCe----EEEEEEcCCCEEEEcCCCeEEEEeCC-C
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNT----LIAKVLNKGDVFVFPIGMIHFQFNIG-K 167 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~----~~~~~L~~GDv~~~P~G~~H~~~N~G-~ 167 (224)
.+.+..+...||...+.|=|..+.=++.|++|+++-.......+ +.. .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 46778889999999999999856667889999987665443311 011 12345677888888999999999987 8
Q ss_pred ccEEEEEEecCC
Q 027345 168 TNAVAFASLGSQ 179 (224)
Q Consensus 168 ~~a~~~~~~~s~ 179 (224)
++++-+=+++.+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888877677654
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.74 E-value=0.012 Score=48.73 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=56.1
Q ss_pred cCCCcCCCccCCCC---cEEEEEEeCEEEEEEEecCCC---CCeEEEEEEcCCC--EEEEcCCCeEEEEeCCCccEEEEE
Q 027345 103 APYGQNPPHTHPRA---TEILVVLEGTLYVGFVTSNQL---NNTLIAKVLNKGD--VFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a---~Ei~yVl~G~~~~~~~~~~~~---~~~~~~~~L~~GD--v~~~P~G~~H~~~N~G~~~a~~~~ 174 (224)
.+|-++.+|+|... ..++.|++|++..-+++-..+ =++.....|.+++ .++||+|+.|.++..+++..+++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 44888999999754 689999999998888874321 1466788998886 799999999999999877444443
Q ss_pred EecCCCCc
Q 027345 175 SLGSQFPG 182 (224)
Q Consensus 175 ~~~s~~pg 182 (224)
+-..-+|+
T Consensus 131 ~t~~y~p~ 138 (176)
T PF00908_consen 131 VTNYYDPE 138 (176)
T ss_dssp ESS---GG
T ss_pred cCCccCcc
Confidence 32223444
No 59
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.42 E-value=0.016 Score=48.87 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=49.8
Q ss_pred EEEEEEcCC-CcCCCccCCCCcEEEEEEeCEEEEEEEecCCC--------------------------------CCeEEE
Q 027345 97 AVRIDYAPY-GQNPPHTHPRATEILVVLEGTLYVGFVTSNQL--------------------------------NNTLIA 143 (224)
Q Consensus 97 ~~~v~l~pg-g~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~--------------------------------~~~~~~ 143 (224)
...+-+.++ ...++|+.+ ..-++.+++|+=++.+..+... ..+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 445667774 478999987 7889999999998888765410 114578
Q ss_pred EEEcCCCEEEEcCCCeEEEEeCCCc
Q 027345 144 KVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 144 ~~L~~GDv~~~P~G~~H~~~N~G~~ 168 (224)
.+|++||+++||+|..|..+|..++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~ 235 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDD 235 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCC
Confidence 8999999999999999999999433
No 60
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.22 E-value=0.015 Score=51.92 Aligned_cols=90 Identities=24% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCCceEEEecccCCCC-CCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEE
Q 027345 74 RLGFSVTNANVEQIPG-LNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~-l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
..|..++-++..+=-- ..+.+..|- .+.||-...+|-|. .+-+.-|.+|++++.+.++ ++...+||+|
T Consensus 241 ~dG~~~ryvNP~TGg~~mptI~a~mq--lL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig~~--------rf~~~~~D~f 309 (351)
T COG3435 241 FDGYKMRYVNPVTGGYAMPTIGAFMQ--LLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIGGE--------RFDWSAGDIF 309 (351)
T ss_pred CCcceEEEecCCCCCCcCchHHHHHH--hcCCcccCCceecc-CCEEEEEEecceeEEECCE--------EeeccCCCEE
Confidence 4455666665433211 112222222 37788888999887 6788889999999988644 6999999999
Q ss_pred EEcCCCeEEEEeCCCccEEEEEE
Q 027345 153 VFPIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 153 ~~P~G~~H~~~N~G~~~a~~~~~ 175 (224)
++|.=..|.+.|. .+++++++.
T Consensus 310 vVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 310 VVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred EccCcceeecccC-CcceEEEec
Confidence 9999999988875 777877763
No 61
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.73 E-value=0.11 Score=48.62 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=39.1
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEec
Q 027345 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLG 177 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~ 177 (224)
..-.+-+++|++++-+|++++.- +- + ...+++||.++||+|+.+.+.-.|.....++-++.
T Consensus 139 ~~f~NaDGD~Li~~q~G~l~l~T--e~---G---~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 139 RAFRNADGDELIFPQQGSLRLET--EF---G---RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp EEEEESSEEEEEEEEES-EEEEE--TT---E---EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred cceEcCCCCEEEEEEECCEEEEe--cC---e---eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 34456779999999999998763 33 3 36899999999999999998766433333343444
No 62
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.72 E-value=0.13 Score=46.30 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=45.3
Q ss_pred EEEEEEEcCCC--cCCCccCCCCcEEEEEEeCEEEEEEEecCC----C-----------CCeEEEEEEcCCCEEEEcCCC
Q 027345 96 SAVRIDYAPYG--QNPPHTHPRATEILVVLEGTLYVGFVTSNQ----L-----------NNTLIAKVLNKGDVFVFPIGM 158 (224)
Q Consensus 96 s~~~v~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~----~-----------~~~~~~~~L~~GDv~~~P~G~ 158 (224)
..+.+.+.|++ ...|||=. .+-+++=++|+=+..+..... . .......+|++||++|+|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34456677887 78999886 566667778887777665210 0 012447899999999999999
Q ss_pred eEEEEeCC
Q 027345 159 IHFQFNIG 166 (224)
Q Consensus 159 ~H~~~N~G 166 (224)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999988
No 63
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.49 E-value=0.052 Score=40.39 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=35.2
Q ss_pred EEEEcCCCcCCCccCCCCc--EEEEEE--eCEEEEEEEecCC---------------CCCeEEEEEEcCCCEEEEcCCCe
Q 027345 99 RIDYAPYGQNPPHTHPRAT--EILVVL--EGTLYVGFVTSNQ---------------LNNTLIAKVLNKGDVFVFPIGMI 159 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~--Ei~yVl--~G~~~~~~~~~~~---------------~~~~~~~~~L~~GDv~~~P~G~~ 159 (224)
....++|+..++|.|+.+. =+.||- ++...+.+.++.. .....+....++||+++||+-+.
T Consensus 4 ~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~ 83 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLW 83 (101)
T ss_dssp EEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSE
T ss_pred EEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCE
Confidence 3456789999999998542 223332 2333333433321 01234567889999999999999
Q ss_pred EEEE-eCCCccEEEE
Q 027345 160 HFQF-NIGKTNAVAF 173 (224)
Q Consensus 160 H~~~-N~G~~~a~~~ 173 (224)
|... |.++++-+.+
T Consensus 84 H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 84 HGVPPNNSDEERISI 98 (101)
T ss_dssp EEE----SSS-EEEE
T ss_pred EeccCcCCCCCEEEE
Confidence 9875 4445444433
No 64
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=95.45 E-value=0.079 Score=44.64 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEE
Q 027345 74 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~ 153 (224)
..|+.+..+...+ +-...++++.+.||..+|-|+|- +-|.+.|++|... +++ -++.+||...
T Consensus 112 ~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de~--------G~y~vgD~~~ 173 (216)
T COG3806 112 GPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DEN--------GEYLVGDFTL 173 (216)
T ss_pred cCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeeccc----cCC--------CccccCceee
Confidence 3455555443333 22578999999999999999997 9999999999764 554 3688999999
Q ss_pred EcCCCeEEEEeCCCccEEEEEEecCC
Q 027345 154 FPIGMIHFQFNIGKTNAVAFASLGSQ 179 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~~~~~~s~ 179 (224)
-+.++-|.-.-..+.++..++++.-+
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred cCCccccccccCCCCCceEEEEcCCC
Confidence 99999998656667788888877543
No 65
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.45 E-value=0.096 Score=44.89 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=46.6
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEe-CEEEEEEEecCCC-------------CCeEE------EEEEcCCCEEEEcCCC
Q 027345 99 RIDYAPYGQNPPHTHPRATEILVVLE-GTLYVGFVTSNQL-------------NNTLI------AKVLNKGDVFVFPIGM 158 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~-G~~~~~~~~~~~~-------------~~~~~------~~~L~~GDv~~~P~G~ 158 (224)
.+.+.+|...|.|.|..-.|=++.-- |.+.+.+....++ ++..+ ..+|+||+.+-+++|+
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 35678999999999998888777775 6776766654311 11111 3579999999999999
Q ss_pred eEEEEeCCCccEEEEEEec
Q 027345 159 IHFQFNIGKTNAVAFASLG 177 (224)
Q Consensus 159 ~H~~~N~G~~~a~~~~~~~ 177 (224)
.|+++..+.. +++.-++
T Consensus 171 yH~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 171 YHWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEEE-TTS--EEEEEEE
T ss_pred eeeEEecCCC--EEEEeee
Confidence 9999876544 5544444
No 66
>PF12852 Cupin_6: Cupin
Probab=95.19 E-value=0.1 Score=42.79 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=35.7
Q ss_pred cEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCC
Q 027345 117 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 117 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G 166 (224)
.-+.+|++|+..+.+.+.. . ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~~~----~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGG----E--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcCCC----C--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 5678899999999876521 1 589999999999999999985433
No 67
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.06 E-value=0.087 Score=46.02 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=36.1
Q ss_pred CcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 116 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
+-++.++++|++.+...+ + .+.+++||++++|+|.+|......+
T Consensus 49 ~~~i~~~~~G~~~~~~~~------~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 49 GYILNLTIRGQGVIFNGG------R--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ceEEEEEEeccEEEecCC------e--eEecCCCCEEEECCCCceeeccCCC
Confidence 678899999999986532 2 5899999999999999998765443
No 68
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.04 E-value=0.02 Score=50.11 Aligned_cols=75 Identities=23% Similarity=0.243 Sum_probs=44.0
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEE
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~ 174 (224)
+.-..+.++.|-...+|+|+ ..|-.|||+|++..+..... + ...|.+|-.+.-|.+..|... .++++++++.
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~---~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI 242 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS---N---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYI 242 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE---T---TEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC---C---CccccCCcccccCCccccccc-ccCCCEEEEE
Confidence 44555667777778999998 89999999999998653321 2 379999999999999999998 7788888886
Q ss_pred Eec
Q 027345 175 SLG 177 (224)
Q Consensus 175 ~~~ 177 (224)
-.+
T Consensus 243 Rtd 245 (251)
T PF14499_consen 243 RTD 245 (251)
T ss_dssp EES
T ss_pred EEC
Confidence 554
No 69
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.01 E-value=0.11 Score=39.67 Aligned_cols=62 Identities=29% Similarity=0.288 Sum_probs=45.0
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcC--CCeEEEEeCCC-ccEEEE
Q 027345 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI--GMIHFQFNIGK-TNAVAF 173 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~--G~~H~~~N~G~-~~a~~~ 173 (224)
+...++|-|..-+-+.||++|++.-. |+.+ + ..+|++||+-++-+ |+.|.-.|.++ +++.++
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G--~---~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLG--N---RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTS--E---EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCC--C---eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 55669999986666678999998754 4442 3 37899999988876 58999999887 666665
No 70
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.78 E-value=0.14 Score=43.30 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=45.9
Q ss_pred EEEEEEEcCCCcCCCccCCCC--cEEEEEE--eCEEEEEEEecCCC---------------CCeEEEEEEcCCCEEEEcC
Q 027345 96 SAVRIDYAPYGQNPPHTHPRA--TEILVVL--EGTLYVGFVTSNQL---------------NNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 96 s~~~v~l~pgg~~ppH~Hp~a--~Ei~yVl--~G~~~~~~~~~~~~---------------~~~~~~~~L~~GDv~~~P~ 156 (224)
.+....+++|+....|.|+++ +=+.||- +|.....|.++... ........-++||+++||+
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 455567889999999999964 2233333 12222222222100 0011123458999999999
Q ss_pred CCeEEEE-eCCCccEEEEEEec
Q 027345 157 GMIHFQF-NIGKTNAVAFASLG 177 (224)
Q Consensus 157 G~~H~~~-N~G~~~a~~~~~~~ 177 (224)
-+.|... |.++++-+-+ +||
T Consensus 177 ~L~H~v~p~~~~~~RISi-SFN 197 (201)
T TIGR02466 177 WLRHEVPPNESEEERISV-SFN 197 (201)
T ss_pred CCceecCCCCCCCCEEEE-EEe
Confidence 9999865 4444444333 443
No 71
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.74 E-value=0.28 Score=46.02 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=43.3
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEE
Q 027345 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~ 174 (224)
...-.+-+++|++++-+|++.+.-. - + ...+++||+++||+|+.+.+. ..+.+++.+.
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TE--f---G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi 203 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATE--L---G---VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYV 203 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEe--c---c---ceEecCCCEEEEcCccEEEEe-cCCCCeeEEE
Confidence 3445566799999999999987643 2 2 378999999999999998886 3344555543
No 72
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.51 E-value=0.062 Score=45.79 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=48.0
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEE
Q 027345 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
.|+...--|..+ +.|++|=.+|.....++++ ++....++++||++..|+.++|.-+
T Consensus 41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie~----g~~rDivI~qGe~flLParVpHSPq 96 (279)
T KOG3995|consen 41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ----GKHRDVVIRQGEIFLLPARVPHSPQ 96 (279)
T ss_pred CCCcccccccCC-cchhheeecCceEEeeecc----CcceeeEEecCcEEEeccCCCCChh
Confidence 455566778887 8999999999999999987 5666889999999999999999744
No 73
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.49 E-value=0.37 Score=45.11 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEec
Q 027345 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLG 177 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~ 177 (224)
...-...+++|++++-+|++.+.-. - + ...+++||+++||+|+.+.+.-.|.....++-++.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE--f---G---~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE--F---G---RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe--c---c---ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 4445566799999999999987643 2 2 37899999999999999988755433333333343
No 74
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=94.38 E-value=0.2 Score=40.82 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=47.9
Q ss_pred cCCCCCCc-cce-EEEEEEEcCCCcCCCccCCCCcEE----EEEE-eCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCC
Q 027345 85 EQIPGLNT-LGI-SAVRIDYAPYGQNPPHTHPRATEI----LVVL-EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG 157 (224)
Q Consensus 85 ~~~P~l~~-~gi-s~~~v~l~pgg~~ppH~Hp~a~Ei----~yVl-~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G 157 (224)
+++|...+ ..+ .+....+.||+.+.||.-+....+ -+++ .+...+.+. ++ ++..++|++++|.-.
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~------~~--~~~w~~G~~~~fD~s 139 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG------GE--TRHWREGECWVFDDS 139 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET------TE--EEB--CTEEEEE-TT
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC------Ce--EEEeccCcEEEEeCC
Confidence 44544442 223 344456899999999987643322 2233 233444443 22 578899999999999
Q ss_pred CeEEEEeCCCccEEEEE
Q 027345 158 MIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 158 ~~H~~~N~G~~~a~~~~ 174 (224)
..|...|.|+++-+.+.
T Consensus 140 ~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 140 FEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp S-EEEEESSSS-EEEEE
T ss_pred EEEEEEeCCCCCEEEEE
Confidence 99999999988766654
No 75
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.30 E-value=0.41 Score=44.95 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=41.9
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
..-.+-+++|++++-+|++.+.- +- + ...+++||+++||+|+.+.+.- .+++++.+
T Consensus 140 ~~f~NaDGD~Livpq~G~l~i~T--Ef---G---~L~v~pgei~VIPRG~~frv~l-~~gp~rgy 195 (435)
T PLN02658 140 CAFCNADGDFLIVPQQGRLWIKT--EL---G---KLQVSPGEIVVIPRGFRFAVDL-PDGPSRGY 195 (435)
T ss_pred ceeecCCCCEEEEEEeCCEEEEE--ec---c---ceEecCCCEEEecCccEEEEec-CCCCeeEE
Confidence 33566789999999999998764 32 2 3789999999999999988753 23455544
No 76
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.19 E-value=0.18 Score=44.76 Aligned_cols=68 Identities=26% Similarity=0.321 Sum_probs=50.7
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCC--CeEEEEeC--CCccEEEE
Q 027345 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG--MIHFQFNI--GKTNAVAF 173 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G--~~H~~~N~--G~~~a~~~ 173 (224)
..++.||...+||-|..-+-+.||++|+++-. |+.+ |+ ..+++||+-.+-+| +.|.-.|. .++++..+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~G--n~---~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLG--NK---GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCC--ce---eeecccceeEEcCCCceeecccCCccCCCcccee
Confidence 34589999999999985556678999998765 3332 43 78999999998875 78988886 33344443
No 77
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.15 E-value=0.11 Score=38.72 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCEEEEcCCCeEEEEeCCCccE
Q 027345 140 TLIAKVLNKGDVFVFPIGMIHFQFNIGKTNA 170 (224)
Q Consensus 140 ~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a 170 (224)
+.++.+-++||.+++|+|..|+..|.|..-+
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~ 109 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNIS 109 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSEEE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCceEE
Confidence 5678899999999999999999999997533
No 78
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.70 E-value=0.48 Score=40.12 Aligned_cols=88 Identities=20% Similarity=0.161 Sum_probs=61.4
Q ss_pred CCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCC---C----CCeEEEEE------E-cCCC-EEEE
Q 027345 90 LNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ---L----NNTLIAKV------L-NKGD-VFVF 154 (224)
Q Consensus 90 l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---~----~~~~~~~~------L-~~GD-v~~~ 154 (224)
.....+++..+-++||..+|+|=||+-.-+.-|+.|++.+.-.+--. + ..+..... + .+++ .+..
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 44446889999999999999999998778888999999886554211 0 00111111 2 2333 5556
Q ss_pred cC--CCeEEEEeCCCccEEEEEEecC
Q 027345 155 PI--GMIHFQFNIGKTNAVAFASLGS 178 (224)
Q Consensus 155 P~--G~~H~~~N~G~~~a~~~~~~~s 178 (224)
|. |-+|.+.+.+ +++.++-++..
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence 65 4899999987 88988888863
No 79
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.50 E-value=0.57 Score=40.98 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=45.9
Q ss_pred ceEEEEEEEcCCCcC-----CCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCc
Q 027345 94 GISAVRIDYAPYGQN-----PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 94 gis~~~v~l~pgg~~-----ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~ 168 (224)
++.+.++...+.... ..|.+.+.-.++++++|++.+...+ + ...+++||++++|.+.+|.+.-.++.
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g------~--~~~l~~G~~~l~~~~~p~~~~~~~~~ 115 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDD------R--QVQLAAGDITLIDASRPCSIYPQGLS 115 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECC------e--EEEEcCCCEEEEECCCCcEeecCCCc
Confidence 355666665554321 2344444456778899999887643 2 58999999999999999987654443
Q ss_pred c
Q 027345 169 N 169 (224)
Q Consensus 169 ~ 169 (224)
.
T Consensus 116 ~ 116 (302)
T PRK09685 116 E 116 (302)
T ss_pred e
Confidence 3
No 80
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.28 E-value=0.44 Score=41.95 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=47.1
Q ss_pred cCCCcCCCccC-CCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCC-CEEEEcCCCeEEEEeCC
Q 027345 103 APYGQNPPHTH-PRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG-DVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 103 ~pgg~~ppH~H-p~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~G-Dv~~~P~G~~H~~~N~G 166 (224)
-|++...+|.| +...|.+.|++|++.+.+.++.+ .......+.+. +.-++|++..|...-..
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g--~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG--EELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC--CeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 46788999999 55679999999999988877652 33444556664 56579999999987663
No 81
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=93.17 E-value=0.51 Score=39.67 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=48.6
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEE-eCEEEEEEEecC--C----C-------CCeEE------EEEEcCCCEEEEcCC
Q 027345 98 VRIDYAPYGQNPPHTHPRATEILVVL-EGTLYVGFVTSN--Q----L-------NNTLI------AKVLNKGDVFVFPIG 157 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl-~G~~~~~~~~~~--~----~-------~~~~~------~~~L~~GDv~~~P~G 157 (224)
-.+.+.+|...|+|.|++-.|=++=- .|++.+.+.... . . +++.. ...|+||+.+-+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 34568899999999999655543322 233433332211 0 0 01111 357999999999999
Q ss_pred CeEEEEeCCCccEEEEEEecCC
Q 027345 158 MIHFQFNIGKTNAVAFASLGSQ 179 (224)
Q Consensus 158 ~~H~~~N~G~~~a~~~~~~~s~ 179 (224)
+.|+++.-+.. +++.-.++-
T Consensus 169 ~~HsFwae~g~--vlvgEvSsv 188 (225)
T COG3822 169 LYHSFWAEEGG--VLVGEVSSV 188 (225)
T ss_pred ceeeeeecCCc--EEEEEEeec
Confidence 99999875443 444444443
No 82
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.09 E-value=0.72 Score=40.92 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=57.1
Q ss_pred cceEEEEEEEcCCC---cCCCccCCCCcEEEEEE---eCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCC
Q 027345 93 LGISAVRIDYAPYG---QNPPHTHPRATEILVVL---EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 93 ~gis~~~v~l~pgg---~~ppH~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G 166 (224)
-.+-+....+.||+ .-|||.|.|..|..|-- ++.-.+.+.++. ++.+...++-||+++.|+=.+|.- .|
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p---dETrh~~v~n~~aVisP~wsih~g--~g 247 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP---QETRHIVVHNEQAVISPSWSIHSG--VG 247 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc---cceeeEEEECCCEEECCCcceecC--cC
Confidence 35677777789998 46999999777754422 333333333332 444458999999999999999975 46
Q ss_pred CccEEEEEEecCCC
Q 027345 167 KTNAVAFASLGSQF 180 (224)
Q Consensus 167 ~~~a~~~~~~~s~~ 180 (224)
...-.||+....+|
T Consensus 248 t~~y~fiw~m~gen 261 (276)
T PRK00924 248 TSNYTFIWGMAGEN 261 (276)
T ss_pred ccccEEEEEecccC
Confidence 66777787776554
No 83
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.082 Score=50.02 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=44.1
Q ss_pred cCCC-cCCCccCCCCcEEEEEEeCEEEEEEEecCC-----------------CCCeEEEEEEcCCCEEEEcCCCeEEEEe
Q 027345 103 APYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQ-----------------LNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 103 ~pgg-~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----------------~~~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
+||. -.+|||-. -+-+++=++|+=+..+..+.. -+.-+....|++||++|||+|.+|...-
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 4444 57999985 566777889987766654420 0234567889999999999999997643
No 84
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=92.57 E-value=0.62 Score=40.04 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=58.4
Q ss_pred CCCCCccceEEEEEEEcCCCcCCC-ccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeC
Q 027345 87 IPGLNTLGISAVRIDYAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 87 ~P~l~~~gis~~~v~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
.|.--...+-+..+.++||+.+|- -+|- -+-=+||++|++...+... ...+++||.+.+-+-.+.+.+..
T Consensus 174 ~P~d~r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~d--------wv~V~aGD~mwm~A~cpQacyag 244 (264)
T COG3257 174 LPKELRFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNNN--------WVPVEAGDYIWMGAYCPQACYAG 244 (264)
T ss_pred CccccCcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecCc--------eEEeecccEEEeeccChhhhccC
Confidence 343334578889999999998765 3453 3445899999999887422 68999999999999999888887
Q ss_pred CCccEEEE
Q 027345 166 GKTNAVAF 173 (224)
Q Consensus 166 G~~~a~~~ 173 (224)
|....+.+
T Consensus 245 G~g~frYL 252 (264)
T COG3257 245 GRGAFRYL 252 (264)
T ss_pred CCCceEEE
Confidence 76644433
No 85
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.01 E-value=2.2 Score=39.25 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=47.1
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCc
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~ 168 (224)
|+.+....+..+-....-..-+++|++++-+|++++...-. ..++++||..+||+|+.-..+-...+
T Consensus 124 g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~G--------~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 124 GVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTELG--------VLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred ceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEeec--------eEEecCCcEEEeeCCceEEEEecCCc
Confidence 44444333333323355566778999999999998764322 48999999999999999888765544
No 86
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.48 E-value=1.3 Score=41.24 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=41.2
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
.+.+.++++..+. .+....+.++++|++|++++.. . +. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~---~~~~~~~~~Illv~~G~~~i~~--~----~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQP---TTLSQQSAAILFCVEGEAVLWK--G----EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCce---EEecCCCcEEEEEEcceEEEEe--C----Ce--EEEECCCCEEEEeCCCccEEE
Confidence 3566666665542 2222246799999999999863 2 21 478999999999998776554
No 87
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=90.67 E-value=1.5 Score=32.71 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=43.0
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEe
Q 027345 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASL 176 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~ 176 (224)
..+.++||+.......+...-++||++|++.+. ++ ...+.+|+.+++..|..=.+.+.+ +.++++..-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~--~~--------~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG--GE--------EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET--TT--------TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC--CC--------cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 467888988653333333467899999998653 22 157999999999976666666654 666666443
No 88
>PLN02288 mannose-6-phosphate isomerase
Probab=90.19 E-value=0.92 Score=42.27 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=40.6
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCC
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGM 158 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~ 158 (224)
.+++.++++.++.......+ ++.++++|++|++++..... . .+..|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~~~----~--~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTGSS----E--DGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecCCc----c--ceEEEeceeEEEEeCCC
Confidence 47788888887754222223 37899999999999753211 1 13579999999999864
No 89
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=89.80 E-value=2.5 Score=37.72 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=41.6
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
-+.+.++++..... ...+ ....+++|++|++++.. . +. +..|++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~--~----~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKS--G----GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEE--C----CE--EEEEecccEEEEccCCccEEE
Confidence 56777777764321 1123 36789999999998764 2 21 478999999999999866544
No 90
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=89.77 E-value=4.6 Score=30.13 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=41.3
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEE
Q 027345 101 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~ 175 (224)
.+.||. .+....+.|+.-|++|++++.+.+++ . .+.+++|+.|.+|++.--.++-. ++...+|.
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~----e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGED----E--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT-S----S---EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc----c--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 355655 23333478999999999999987653 2 68999999999999988777653 34444443
No 91
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.54 E-value=1.8 Score=39.93 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeC
Q 027345 86 QIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 86 ~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
..|... .+.+.+++++.|...-.-.-+ +.-|++|++|++++.-... . ...+++||+++||+...-.+. .
T Consensus 326 Y~Ppi~--eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t~----~---~~~v~rG~V~fI~a~~~i~~~-~ 394 (411)
T KOG2757|consen 326 YDPPIE--EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDTD----S---KILVNRGDVLFIPANHPIHLS-S 394 (411)
T ss_pred eCCCCc--ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCCC----C---ceeeccCcEEEEcCCCCceee-c
Confidence 344444 467888888886653333333 7889999999999876522 2 489999999999999776443 3
Q ss_pred CCccEEEEEEe
Q 027345 166 GKTNAVAFASL 176 (224)
Q Consensus 166 G~~~a~~~~~~ 176 (224)
.+++...+-++
T Consensus 395 ~sd~~~~yrAf 405 (411)
T KOG2757|consen 395 SSDPFLGYRAF 405 (411)
T ss_pred cCcceeeeecc
Confidence 34545544444
No 92
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=88.97 E-value=4.4 Score=34.24 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=75.7
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
+.......+++|..+-..-.+ ...+.+|++|.+.+...++++ ++.....+.+||++-+..+..+...-.-.++.+++
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G--~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG--RRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC--cEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 456666788888866444344 678999999999998877653 44456677999988665554443222223444444
Q ss_pred EEec-------CCCCceee----------------------------cchhhh------cC----CCCCCHHHHHhhcCC
Q 027345 174 ASLG-------SQFPGVIT----------------------------IADTVF------GA----DPPINPDFLGKAFQL 208 (224)
Q Consensus 174 ~~~~-------s~~pg~~~----------------------------~~~~~f------~~----~p~~~~~vla~af~~ 208 (224)
.+-. ..+|.... ++..+. +. ..+++.+-||..+|+
T Consensus 112 ~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGi 191 (230)
T PRK09391 112 LIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGL 191 (230)
T ss_pred EEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCC
Confidence 3311 12332210 111111 10 113678899999999
Q ss_pred CHHHHHHHhhhhc
Q 027345 209 DPNVVKDLQKKFI 221 (224)
Q Consensus 209 ~~~~v~~l~~~~~ 221 (224)
..+++.++.+++.
T Consensus 192 sretlsR~L~~L~ 204 (230)
T PRK09391 192 TIETVSRALSQLQ 204 (230)
T ss_pred CHHHHHHHHHHHH
Confidence 9999988777664
No 93
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=88.93 E-value=4.8 Score=29.18 Aligned_cols=63 Identities=17% Similarity=0.031 Sum_probs=42.3
Q ss_pred CCCcCCCccCCCC-cEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 104 PYGQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 104 pgg~~ppH~Hp~a-~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
|.++...|.-..+ -..+-|++|++.+...++.++ -......+.+|+..++++...|.+.-.++
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~-~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGE-EPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT--SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCC-ceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 3345556644322 255779999999988876421 11236789999999999999999988765
No 94
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=88.86 E-value=4.9 Score=31.34 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=41.2
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCc
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~ 168 (224)
+.+.++.....-.+...-+.+.--+.+.++|...+...+. ...+.+||+++++.+.++.+.-.++.
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~--------~~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGR--------EVELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCE--------EEEEcCCeEEEEcCCCCEEEEECCCc
Confidence 4555555543222211111223445667788888775432 58999999999999999987765443
No 95
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=88.65 E-value=4.5 Score=33.11 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=71.5
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEc----CCCeEEEEeCCCccEEEE
Q 027345 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFP----IGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P----~G~~H~~~N~G~~~a~~~ 173 (224)
....+++|..+-..-.+ ...+.+|++|.+.+...+.++ ++.....+.+||++-.. .+..+...-...+++.++
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~ 97 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG--KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 97 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC--CEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEE
Confidence 45578888866443334 678999999999988766542 45556789999997432 222222222234455555
Q ss_pred EEec-------CCCCceee----------------------------cchhhh------cC-------CCCCCHHHHHhh
Q 027345 174 ASLG-------SQFPGVIT----------------------------IADTVF------GA-------DPPINPDFLGKA 205 (224)
Q Consensus 174 ~~~~-------s~~pg~~~----------------------------~~~~~f------~~-------~p~~~~~vla~a 205 (224)
.+=. .++|.... ++..+. +. .-.++.+-||+-
T Consensus 98 ~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~ 177 (211)
T PRK11753 98 EISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRI 177 (211)
T ss_pred EEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHH
Confidence 4311 12332210 011111 00 013777899999
Q ss_pred cCCCHHHHHHHhhhhc
Q 027345 206 FQLDPNVVKDLQKKFI 221 (224)
Q Consensus 206 f~~~~~~v~~l~~~~~ 221 (224)
+|++.+++.++.+++.
T Consensus 178 lG~tr~tvsR~l~~l~ 193 (211)
T PRK11753 178 VGCSREMVGRVLKMLE 193 (211)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999887765
No 96
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=88.48 E-value=7.7 Score=34.12 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=50.9
Q ss_pred eEEEecccCCCCCCccceEEEEEEEcCCC---cCCCccCCCC--------cEEEEEE----eCEEEEEEEecCCCCCeEE
Q 027345 78 SVTNANVEQIPGLNTLGISAVRIDYAPYG---QNPPHTHPRA--------TEILVVL----EGTLYVGFVTSNQLNNTLI 142 (224)
Q Consensus 78 ~v~~~~~~~~P~l~~~gis~~~v~l~pgg---~~ppH~Hp~a--------~Ei~yVl----~G~~~~~~~~~~~~~~~~~ 142 (224)
.|......+.+. .-.+-+..+. .|+| .-|||.|.+. +|+.|-. +|-+.-.+....+ ..-.
T Consensus 136 ~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~--~~d~ 210 (261)
T PF04962_consen 136 TVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP--QLDE 210 (261)
T ss_dssp EEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS--SSEE
T ss_pred EEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC--CCcE
Confidence 454444444442 2245566555 6666 4699999863 5666653 2444322332221 2223
Q ss_pred EEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCC
Q 027345 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQF 180 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~ 180 (224)
...++-||++.+|+|. |-+...-.....++.+....+
T Consensus 211 ~~~V~~~d~V~iP~gy-Hp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 211 HYVVRNGDAVLIPSGY-HPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEEETTEEEEESTTB--SEEEEEESSEEEEEEEESSS
T ss_pred EEEEECCCEEEeCCCC-CCcCcCCCcCcEEEEEEEcCC
Confidence 6889999999999993 333332233444777776666
No 97
>PRK10579 hypothetical protein; Provisional
Probab=87.90 E-value=4.7 Score=30.09 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=38.3
Q ss_pred CCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeC
Q 027345 114 PRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 114 p~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
..+.|+.-|++|++++.+.+++ . .+.+++|+.|-+|++.--.++..
T Consensus 39 T~~~E~MeivsG~l~V~Lpg~~----e--w~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 39 TAEPEEMTVISGALNVLLPGAT----D--WQVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred CCCcEEEEEEeeEEEEECCCCc----c--cEEeCCCCEEEECCCCeEEEEEC
Confidence 3478999999999999987653 2 68999999999999998776653
No 98
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=87.82 E-value=2.6 Score=34.61 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=28.0
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEE
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLY 128 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~ 128 (224)
+++..+++.||...|+|-|- -.-++=|+.|.-+
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~ 105 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGET 105 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccc
Confidence 57889999999999999995 7778888888644
No 99
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=87.79 E-value=3.5 Score=28.26 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=41.3
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEe
Q 027345 100 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
+.+.||....++-.. +.+ +-|.+|++-++..+.. .-+.|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~~-~~~-l~v~~G~vWlT~~g~~------~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-GQR-LRVESGRVWLTREGDP------DDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC-CcE-EEEccccEEEECCCCC------CCEEECCCCEEEeCCCCEEEEEe
Confidence 356777777666553 344 8999999887764432 24899999999999998766654
No 100
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.17 E-value=2.4 Score=29.21 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEE
Q 027345 101 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
.+++|..+-..-. ....+.+|++|.+.+...+.++ .......+.+||++
T Consensus 3 ~~~~g~~i~~~g~-~~~~~~~i~~G~v~~~~~~~~~--~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGD-PCDHIYIILSGEVKVSSINEDG--KEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTS-BESEEEEEEESEEEEEEETTTS--EEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCC-cCCEEEEEEECceEEEeceecc--eeeeecceeeeccc
Confidence 3455553322222 2689999999999999887752 23346788888876
No 101
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=83.09 E-value=3.2 Score=38.26 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=41.9
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecC-CC-------------CCeEEEEEEcCCCEEEEcCCCeEEEEeCC
Q 027345 101 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-QL-------------NNTLIAKVLNKGDVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~~-------------~~~~~~~~L~~GDv~~~P~G~~H~~~N~G 166 (224)
...+||.+-+||-+. +-+++=..|+=+..+.... .. ..-....+|.|||++|+|+|..|+-...+
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 457899999999973 4444444454455554321 00 00112357999999999999999876653
No 102
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=81.94 E-value=6.3 Score=32.06 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=36.3
Q ss_pred EEEEcCCCcCCCccCC-CCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEE
Q 027345 99 RIDYAPYGQNPPHTHP-RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 154 (224)
...+++|..+-.---+ ....+.+|++|.+.+...++++ .+.....+.+||++=.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G--~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG--NALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC--CEEEEEEecCCCeech
Confidence 3456666644322221 2467999999999998887652 4555677899998744
No 103
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=81.16 E-value=8.7 Score=27.08 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=36.5
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEE
Q 027345 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 154 (224)
...+++|..+- +.......+.+|++|.+.+...+.++ +......+.+||.+-.
T Consensus 19 ~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 19 PVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDG--REQILGILGPGDFFGE 71 (120)
T ss_pred EEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCC--ceEEEEeecCCceech
Confidence 45677777552 23333678999999999988765442 4556778899997744
No 104
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=80.44 E-value=13 Score=33.59 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=40.6
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
.+++.+.++..-... .+ + ++..+++|++|++++...++ +..|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~~~~~-~~-~-~~~~il~v~eG~~~l~~~~~--------~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISGTAEF-IK-Q-ESFSILLVLEGEGTLIGGGQ--------TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccChhhh-cc-C-CCcEEEEEEcCeEEEecCCE--------EEEEcCCcEEEEEcCCCcEE
Confidence 456666666541111 11 2 37899999999999875422 68999999999999965544
No 105
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=79.28 E-value=8.7 Score=26.98 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=35.5
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEE
Q 027345 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~ 153 (224)
....+++|..+-..--+ ...+.+|++|.+.+...++++ .+.....+.+|+++-
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g 70 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDG--REQIVGFLGPGDLFG 70 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCC--cEEEEEecCCccCcC
Confidence 34567777755222222 578999999999988776542 345567788998763
No 106
>PHA02984 hypothetical protein; Provisional
Probab=77.33 E-value=16 Score=32.31 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=38.0
Q ss_pred EEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 119 ILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 119 i~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
++.+++|+..+..... ++..+..+++||.|.+.-+.-|...- ++....++
T Consensus 96 FvlCl~G~~~I~~~~~----~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~ 145 (286)
T PHA02984 96 FVLCLNGKTSIECFNK----GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLA 145 (286)
T ss_pred EEEEcCCeEEEEEecC----CceeeeEEecCceEEEEccceEEEEe-CCCceEEE
Confidence 3446789999988765 55668999999999999999998864 34444443
No 107
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=76.65 E-value=9.1 Score=32.10 Aligned_cols=52 Identities=4% Similarity=-0.029 Sum_probs=36.5
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEE
Q 027345 100 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 154 (224)
..+++|..+-..=- ....+.+|++|.+.+...++++ .+.....+.+||++-.
T Consensus 34 ~~~~kge~l~~~G~-~~~~~y~V~~G~v~v~~~~~~G--~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 34 FHFLAREYIVQEGQ-QPSYLFYLTRGRAKLYATLANG--KVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeeCCCCEEEcCCC-CCceEEEEEeCEEEEEEECCCC--CEeeeeecCCCCeEEe
Confidence 45677765533222 2678999999999999887763 4455677899998754
No 108
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=74.68 E-value=22 Score=31.63 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=36.5
Q ss_pred CcEE-EEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEe--CCCccEEEEE
Q 027345 116 ATEI-LVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN--IGKTNAVAFA 174 (224)
Q Consensus 116 a~Ei-~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N--~G~~~a~~~~ 174 (224)
..|+ ++.+.|++++.+.++ ++.|.+.|++++|+|..-.... ....++++..
T Consensus 73 rrE~giV~lgG~~~V~vdG~--------~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 73 RRELGIINIGGAGTVTVDGE--------TYELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred CcEEEEEEccceEEEEECCE--------EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 5665 556789999987533 4779999999999998766554 2345666653
No 109
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=74.56 E-value=17 Score=31.98 Aligned_cols=78 Identities=17% Similarity=0.026 Sum_probs=47.7
Q ss_pred EEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCC--------C
Q 027345 79 VTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG--------D 150 (224)
Q Consensus 79 v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~G--------D 150 (224)
+..++.... +.. -+.+..++|++|.....-.. +.+-.++.++|++++.+.+. + .+.|..- |
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~g~-----~--~~~l~~R~~vF~~~~d 82 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVDGE-----E--FYELGGRESVFDGPPD 82 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEETTE-----E--EEEE-TTSSGGGS--E
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeCCc-----e--EEEecccccccCCCCc
Confidence 444544444 333 24556788889887655543 23344557799999998431 1 4666666 9
Q ss_pred EEEEcCCCeEEEEeCCC
Q 027345 151 VFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 151 v~~~P~G~~H~~~N~G~ 167 (224)
++++|+|..-.+...++
T Consensus 83 ~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 83 ALYVPRGTKVVIFASTD 99 (261)
T ss_dssp EEEE-TT--EEEEESST
T ss_pred EEEeCCCCeEEEEEcCC
Confidence 99999999988887555
No 110
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.31 E-value=12 Score=27.47 Aligned_cols=42 Identities=29% Similarity=0.233 Sum_probs=34.5
Q ss_pred CcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEE
Q 027345 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 116 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
+.|+.-|+.|.+.+.+.+.. ..++..+|+.|.+|...-..++
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~------dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSD------DWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CceEEEEEeeEEEEEcCCCc------ccEEecCCceEEcCCCCeEEEE
Confidence 67999999999999887653 2689999999999998665443
No 111
>PLN02868 acyl-CoA thioesterase family protein
Probab=72.88 E-value=13 Score=34.39 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=37.8
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEE
Q 027345 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 154 (224)
....+++|..+-.--.+ ...+.+|++|++++...+++ ++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~---ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEE---ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCC---CcEEEEEeCCCCEeeh
Confidence 33567777765433333 67899999999998876664 3455678899998873
No 112
>PHA02890 hypothetical protein; Provisional
Probab=72.87 E-value=23 Score=31.15 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.1
Q ss_pred cEEEE--EEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEe
Q 027345 117 TEILV--VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 117 ~Ei~y--Vl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
.|.+| +++|+..+.+... ++..+..+++||.|.+.-+.-|.+.-
T Consensus 91 nEy~FVlCL~Gs~~In~~~~----d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIG----DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEecC----CceeeeeeecCceEEEEccceEEEEc
Confidence 45554 6789999887655 56678999999999999999998865
No 113
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=72.67 E-value=12 Score=29.44 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=47.6
Q ss_pred CCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEE----eCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEE
Q 027345 87 IPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVL----EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 87 ~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl----~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
-|+++ .+...++.+++|...--- ++.|+..+. .|++.+++.++. + ..++|||++.+-.|+.-.+
T Consensus 11 ~P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~---~----~~~~PGDIirLt~Gy~Si~ 78 (134)
T KOG3416|consen 11 KPGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEE---G----CLIQPGDIIRLTGGYASIF 78 (134)
T ss_pred Chhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCc---C----cccCCccEEEecccchhhh
Confidence 46777 467777778888755332 345666554 578888888764 2 5799999999999988877
Q ss_pred Ee
Q 027345 163 FN 164 (224)
Q Consensus 163 ~N 164 (224)
++
T Consensus 79 qg 80 (134)
T KOG3416|consen 79 QG 80 (134)
T ss_pred cC
Confidence 65
No 114
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=72.67 E-value=25 Score=28.77 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=47.1
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEecCC--CCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEE
Q 027345 109 PPHTHPRATEILVVLEGTLYVGFVTSNQ--LNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~--~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~ 173 (224)
.+-.||.++|.++-+.|+-.+-++.+.+ .-.+++.+..++|+.+.+-+|+.|.-.-.=+.+..++
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~ 138 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFL 138 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEE
Confidence 3446888999999999998887776531 1135778999999999999999996432223334443
No 115
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=71.89 E-value=2.1 Score=38.18 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEEEcCCCEEEEcCCCeEE
Q 027345 141 LIAKVLNKGDVFVFPIGMIHF 161 (224)
Q Consensus 141 ~~~~~L~~GDv~~~P~G~~H~ 161 (224)
+....+++||++++|+|.+|.
T Consensus 150 ln~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 150 LNRIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred hcccccCCCCEEEeCCCCccc
Confidence 346789999999999999997
No 116
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=71.20 E-value=9.5 Score=32.70 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCce-
Q 027345 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGV- 183 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~- 183 (224)
.|....|| ++-...|++|+......+ +....+.+|||..+.|+|.....+-..+ +-++.--..--|..
T Consensus 111 eGhsGrh~---ad~y~tIL~G~~~~~~~g------~~~~evy~pGd~~~l~rg~a~~y~m~~~--tw~LEY~RG~IP~~l 179 (216)
T PF04622_consen 111 EGHSGRHW---ADDYFTILSGEQWAWSPG------SLEPEVYKPGDSHHLPRGEAKQYQMPPG--TWALEYGRGWIPSML 179 (216)
T ss_pred CCCCcceE---eeeEEEEEEEEEEEEcCC------CCCceEeccCCEEEecCceEEEEEeCCC--eEEEEecCCchhhhh
Confidence 34455554 677899999999876543 3336899999999999999886654322 33332111222322
Q ss_pred -eecchhhhcCCCCCCHHHHHhhcCCCHH
Q 027345 184 -ITIADTVFGADPPINPDFLGKAFQLDPN 211 (224)
Q Consensus 184 -~~~~~~~f~~~p~~~~~vla~af~~~~~ 211 (224)
+.+++.+|.+ ++-..+-++..+...
T Consensus 180 pf~~~dt~~sT---lDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 180 PFGFADTLFST---LDFPTLYRTVYITAR 205 (216)
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHH
Confidence 3334566664 666666666655543
No 117
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=70.82 E-value=7.3 Score=35.47 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=32.7
Q ss_pred CeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecCCCCce
Q 027345 139 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGSQFPGV 183 (224)
Q Consensus 139 ~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s~~pg~ 183 (224)
.+-..-..++|+.+++|.|..|.+.|...+-|+---..+..|.+.
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~ 304 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPF 304 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCce
Confidence 455577899999999999999999998666554433334455444
No 118
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=70.04 E-value=22 Score=28.90 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCccCCCCcEEEEEEeCEE-EEEEEecCC---CCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEE
Q 027345 109 PPHTHPRATEILVVLEGTL-YVGFVTSNQ---LNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~-~~~~~~~~~---~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~ 175 (224)
-+=.|+..+|.++-+.|+. .+-++.+.. +-++++.+.+.+|+.+.+-+|+.|.-.-.=+++..++.+
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv 143 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVV 143 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEE
Confidence 3345777999999999988 555554431 114678999999999999999999743322356666655
No 119
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=68.28 E-value=4.4 Score=36.66 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEEcCCCEEEEcCCCeEEEE
Q 027345 141 LIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 141 ~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
+....|+|||.+++|+|.+|...
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred hcEEecCCCCEEEecCCCceeec
Confidence 44689999999999999999763
No 120
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=67.53 E-value=5.7 Score=36.95 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.9
Q ss_pred EEEEEEcCCCEEEEcCCCeEEE
Q 027345 141 LIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 141 ~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
+....|++||++++|+|.+|..
T Consensus 236 LN~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEE
Confidence 5578999999999999999975
No 121
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=66.50 E-value=21 Score=31.80 Aligned_cols=46 Identities=2% Similarity=-0.055 Sum_probs=37.0
Q ss_pred cEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCcc
Q 027345 117 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTN 169 (224)
Q Consensus 117 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~ 169 (224)
.-++++.+|.+.+.-.+. . +..+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~g-----~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSSG-----E--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCCC-----c--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 468899999998875332 1 478999999999999999999876544
No 122
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=65.36 E-value=57 Score=27.10 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=34.6
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEE
Q 027345 101 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 154 (224)
.+++|..+-.---+ ...+.+|++|.+.+...++++ ++.....+.+||++-.
T Consensus 41 ~~~kge~l~~~Gd~-~~~ly~v~~G~v~~~~~~~~G--~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKAGDE-LKSLYAIRSGTIKSYTITEQG--DEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECCCCC-cceEEEEeeceEEEEEECCCC--CEEEEEeccCCceecc
Confidence 46666644332222 577899999999998877653 4444556689999854
No 123
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=64.18 E-value=28 Score=27.71 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=39.0
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcC
Q 027345 97 AVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 97 ~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 156 (224)
.....+++|..+-..--+ +.-+.+|++|.+.+....+++ .+.....+.+||.+-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G--~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG--REIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC--cEEEEEEecCCchhhhHH
Confidence 344456666554444444 556889999999999887762 445566799999886654
No 124
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=62.49 E-value=77 Score=25.14 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=51.1
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeC-EEEEEEEecCCCCCeEEEEEEc----CCC--EEEEcCCCeEEEEeCCC
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEG-TLYVGFVTSNQLNNTLIAKVLN----KGD--VFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~~~~~~~~~~L~----~GD--v~~~P~G~~H~~~N~G~ 167 (224)
.+....-+.++....+|.= +++|+.+...| .+++.+.+++ ++..+.+|. +|+ .++||+|.....+-.+.
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d---g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD---GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT---STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC---CCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 4555566777777777755 58999999998 6888888886 555555663 443 78999999998765444
Q ss_pred ccEEEEE
Q 027345 168 TNAVAFA 174 (224)
Q Consensus 168 ~~a~~~~ 174 (224)
..-.+++
T Consensus 117 ~~y~Lvs 123 (139)
T PF06172_consen 117 GDYSLVS 123 (139)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 4444443
No 125
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=61.36 E-value=76 Score=27.82 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=54.9
Q ss_pred EEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecC-C-CCCeEEEEEEcCCCEEEEcC
Q 027345 79 VTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-Q-LNNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 79 v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~-~~~~~~~~~L~~GDv~~~P~ 156 (224)
+..++.++ ++..- +.+..++|++|.....-.-. -+-++++++|++++...+.. + -+.|.-.++=++=|++++|.
T Consensus 16 v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~ 91 (270)
T COG3718 16 VQDVTPES-AGWEY--VGFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPA 91 (270)
T ss_pred eEEecCCC-CCcee--EEEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecC
Confidence 44444332 34432 44555678999887766654 34455678999998765543 0 01343345566779999999
Q ss_pred CCeEEEEeCCCc
Q 027345 157 GMIHFQFNIGKT 168 (224)
Q Consensus 157 G~~H~~~N~G~~ 168 (224)
|..-.+...++-
T Consensus 92 g~~~~vtA~t~~ 103 (270)
T COG3718 92 GSAFSVTATTDL 103 (270)
T ss_pred CceEEEEeecce
Confidence 999888776554
No 126
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=61.30 E-value=21 Score=25.63 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=37.8
Q ss_pred EEEcCCCcCCCccCC---CCcEEEEE--Ee-CE-----EEEEEEecCCCCCeEEEEE-----EcCCCEEEEcC-CCeEEE
Q 027345 100 IDYAPYGQNPPHTHP---RATEILVV--LE-GT-----LYVGFVTSNQLNNTLIAKV-----LNKGDVFVFPI-GMIHFQ 162 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp---~a~Ei~yV--l~-G~-----~~~~~~~~~~~~~~~~~~~-----L~~GDv~~~P~-G~~H~~ 162 (224)
..+.+|+...||+.. ....+.++ +. .. +...+......+....... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 346899999999876 34444444 33 11 3333332100001112233 88999999999 999988
Q ss_pred EeC
Q 027345 163 FNI 165 (224)
Q Consensus 163 ~N~ 165 (224)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 766
No 127
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.79 E-value=11 Score=28.03 Aligned_cols=13 Identities=38% Similarity=0.237 Sum_probs=6.5
Q ss_pred CchhhHHHHHHHH
Q 027345 1 MKAVQFLSGFALL 13 (224)
Q Consensus 1 m~~~~~~~~~~~~ 13 (224)
|+|-.|++|.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 7764444443333
No 128
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.31 E-value=5.4 Score=34.22 Aligned_cols=42 Identities=26% Similarity=0.201 Sum_probs=34.7
Q ss_pred ccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEe
Q 027345 92 TLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVT 133 (224)
Q Consensus 92 ~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~ 133 (224)
+-++|+..+.++|++++|+|-||.-.-+.=++-|++.+.-.+
T Consensus 72 cD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 72 CDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred cCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 336889999999999999999997667777889999876543
No 129
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=56.11 E-value=74 Score=24.99 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=34.9
Q ss_pred cCCCccCCCCcEEEEEEeCEEEEEEEecCC----------C--------CCeEEEEEEcCCCEEEEcCCCeEE
Q 027345 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQ----------L--------NNTLIAKVLNKGDVFVFPIGMIHF 161 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~----------~--------~~~~~~~~L~~GDv~~~P~G~~H~ 161 (224)
-..+=.|.+-.-+-|+++|+=++++..... + +.......|++|+..+|-++-+|.
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~ 132 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHK 132 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCccc
Confidence 345556777889999999999998853210 0 011224566667766666666664
No 130
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=54.78 E-value=41 Score=26.84 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=27.8
Q ss_pred CcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEE
Q 027345 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 116 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~ 153 (224)
...+.+|++|.+.+...++++ .......+.+||++=
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G--~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG--EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC--cEeeeEEccCCCEee
Confidence 467889999999998877652 455567899999774
No 131
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=54.74 E-value=87 Score=24.98 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=40.0
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEecCC---------C-------CCeEEEEEEcCCCEEEEcCCCeEEEE
Q 027345 109 PPHTHPRATEILVVLEGTLYVGFVTSNQ---------L-------NNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---------~-------~~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
.+=.|.+-..+-|+++|+-.+++..... + +... ...|++|+.++|.++-+|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~-~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGE-TVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCc-EEEeCCCeEEEECCcccccCC
Confidence 4456777899999999999888854321 0 1122 678999999999999999764
No 132
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=54.10 E-value=37 Score=28.34 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=35.0
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEE
Q 027345 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~ 153 (224)
...+++|..+- +-......+.+|++|.+.+.....+ ++.....+.+||++-
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~---~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD---RETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC---ceEEEEEeCCCchhh
Confidence 35567776543 2333467899999999998865432 455567889999764
No 133
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=53.72 E-value=15 Score=34.02 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=44.3
Q ss_pred CCcCCCc---cCCCCcEEEEEEeCEEEEEEEecCCC----------------------CCeEEEEEEcCCCEEEEcCCCe
Q 027345 105 YGQNPPH---THPRATEILVVLEGTLYVGFVTSNQL----------------------NNTLIAKVLNKGDVFVFPIGMI 159 (224)
Q Consensus 105 gg~~ppH---~Hp~a~Ei~yVl~G~~~~~~~~~~~~----------------------~~~~~~~~L~~GDv~~~P~G~~ 159 (224)
|.-.|.| +| +.-+...+.|.=+.-+..+..+ ..+..+..=++|+.+++|.|.-
T Consensus 208 gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW~ 285 (427)
T KOG2131|consen 208 GSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGWH 285 (427)
T ss_pred CCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCccc
Confidence 4467888 77 4667788888877666554310 0122234558999999999999
Q ss_pred EEEEeCCCc
Q 027345 160 HFQFNIGKT 168 (224)
Q Consensus 160 H~~~N~G~~ 168 (224)
|...|.+++
T Consensus 286 hQV~NL~dT 294 (427)
T KOG2131|consen 286 HQVLNLGDT 294 (427)
T ss_pred cccccccce
Confidence 999999886
No 134
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=53.24 E-value=50 Score=26.17 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=37.4
Q ss_pred ceEEEEEEEcCC--CcCCCccCCCCcEEEEEEeCEEEEEEE-ecCC---------C--------CCeEEEEEEcCCCEEE
Q 027345 94 GISAVRIDYAPY--GQNPPHTHPRATEILVVLEGTLYVGFV-TSNQ---------L--------NNTLIAKVLNKGDVFV 153 (224)
Q Consensus 94 gis~~~v~l~pg--g~~ppH~Hp~a~Ei~yVl~G~~~~~~~-~~~~---------~--------~~~~~~~~L~~GDv~~ 153 (224)
++.+...+.... .-..+=.|.+-..+-|+++|+=++++. .... + +.......|++|+.++
T Consensus 45 ~~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~i 124 (153)
T PF04074_consen 45 DLFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAI 124 (153)
T ss_dssp S-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEE
T ss_pred cEEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEE
Confidence 344444444333 334556788889999999999999883 2210 0 1122246799999999
Q ss_pred EcCCCeEEE
Q 027345 154 FPIGMIHFQ 162 (224)
Q Consensus 154 ~P~G~~H~~ 162 (224)
|-++-+|.-
T Consensus 125 ffP~d~H~p 133 (153)
T PF04074_consen 125 FFPEDAHRP 133 (153)
T ss_dssp E-TT--EEE
T ss_pred ECCCccccc
Confidence 999999974
No 135
>COG1741 Pirin-related protein [General function prediction only]
Probab=52.58 E-value=1.7e+02 Score=26.01 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEE
Q 027345 86 QIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVG 130 (224)
Q Consensus 86 ~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~ 130 (224)
..|.-... +.+..+.+++|+..+.+ =+.-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 44555555 78888899999987776 222356899999988764
No 136
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=52.15 E-value=90 Score=25.77 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=46.7
Q ss_pred CCccCCCCcEEEEEEeC-EEEEEEEecCC--CCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEE
Q 027345 109 PPHTHPRATEILVVLEG-TLYVGFVTSNQ--LNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAS 175 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~--~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~ 175 (224)
.+-.||.+++-++-+.| ..++-++.+.+ .-+.++.+....|+.+-+-+|+.|.-.-.=+.+..++++
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 34467878999998999 76666665421 113578899999999999999999754332334445544
No 137
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=51.08 E-value=1.3e+02 Score=24.36 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=47.7
Q ss_pred ceEEEEEEE--cCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCC-----------------CCeEEEEEEcCCCEEEE
Q 027345 94 GISAVRIDY--APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-----------------NNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 94 gis~~~v~l--~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-----------------~~~~~~~~L~~GDv~~~ 154 (224)
++.+...+. .+....-+-.|.+-..+-++++|+=.+++....+. .......+|.+|+..+|
T Consensus 45 ~if~~v~~~~t~~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiF 124 (154)
T COG2731 45 NIFYNVMEDETQEAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIF 124 (154)
T ss_pred cEEEEEEeccccchhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEE
Confidence 344444443 23334445566678999999999988887654320 11133678999999999
Q ss_pred cCCCeEEEEeC
Q 027345 155 PIGMIHFQFNI 165 (224)
Q Consensus 155 P~G~~H~~~N~ 165 (224)
=+|.+|.-.-.
T Consensus 125 fP~e~H~P~c~ 135 (154)
T COG2731 125 FPGEPHRPGCN 135 (154)
T ss_pred CCCCccccccc
Confidence 99999975433
No 138
>PHA00672 hypothetical protein
Probab=47.98 E-value=1.2e+02 Score=23.99 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=51.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEE
Q 027345 94 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 171 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~ 171 (224)
|++...+.++.|....=-.|. -|-+++.+|.+++...++ ...|+.=-++.-|+|--...+.-.|+...
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdge--------~~rl~g~~~i~~~aG~KragyAHeDT~wt 113 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGGE--------AVELRGYHVIPASAGRKQAFVAHADTDLT 113 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCCc--------EEEEecceeeecCCCcccceeeeccceEE
Confidence 889999999999988777784 445599999999987643 46788777888888877766655444433
No 139
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=46.71 E-value=1.1e+02 Score=26.77 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=56.9
Q ss_pred CCCccceEEEEEEEcCCCc---CCCccCCCCcEEEEEE---eCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEE
Q 027345 89 GLNTLGISAVRIDYAPYGQ---NPPHTHPRATEILVVL---EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 89 ~l~~~gis~~~v~l~pgg~---~ppH~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
++++-.+++....++||.+ .|.|.|.|..|..+-. +-+-.+.+-++. .+.+..+++--+.++-|+=.+|.-
T Consensus 171 ~~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP---~ETRHiv~~NEqAViSP~WSIHSG 247 (278)
T COG3717 171 VLESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP---QETRHIVMHNEQAVISPPWSIHSG 247 (278)
T ss_pred hhhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC---CceeEEEEeccceeeCCCceeecC
Confidence 3444457777788999985 5999999998876533 222333343332 344466777777888888888864
Q ss_pred EeCCCccEEEEEEecCCC
Q 027345 163 FNIGKTNAVAFASLGSQF 180 (224)
Q Consensus 163 ~N~G~~~a~~~~~~~s~~ 180 (224)
.|...-.++++...+|
T Consensus 248 --~GT~~YtFIWaMaGeN 263 (278)
T COG3717 248 --VGTANYTFIWAMAGEN 263 (278)
T ss_pred --ccccceEEEEEecccc
Confidence 4556666777765444
No 140
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=44.71 E-value=49 Score=33.59 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=34.5
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEE
Q 027345 97 AVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 97 ~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
+....+.||..+-.-=.+ .+++.+|++|++.+...... ++.....+++||++
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~---~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGE---KERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCC---cceeeEEccCCCEe
Confidence 344567888755333233 67899999999998543221 44446789999977
No 141
>PLN02288 mannose-6-phosphate isomerase
Probab=41.53 E-value=20 Score=33.52 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=18.1
Q ss_pred EEEEcCCCEEEEcCCCeEEE
Q 027345 143 AKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~ 162 (224)
...|+|||.+++|+|.+|.-
T Consensus 252 ~v~L~PGeaifl~ag~~HAY 271 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAY 271 (394)
T ss_pred eEecCCCCEEEecCCCCcee
Confidence 57899999999999999954
No 142
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=41.44 E-value=27 Score=27.09 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHhhhhc
Q 027345 196 PINPDFLGKAFQLDPNVVKDLQKKFI 221 (224)
Q Consensus 196 ~~~~~vla~af~~~~~~v~~l~~~~~ 221 (224)
|++|..+|+..++++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 59999999999999999999998755
No 143
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=41.25 E-value=1.8e+02 Score=23.02 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=40.1
Q ss_pred CcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEE---eCCCccEEEEEE
Q 027345 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF---NIGKTNAVAFAS 175 (224)
Q Consensus 116 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~---N~G~~~a~~~~~ 175 (224)
..-+.+|++|+=++.++++ .+...+|+.++.+..++-..+ ...++|...+..
T Consensus 23 ~p~i~~vlQG~K~~~~g~~--------~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLGDQ--------VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CCeEEEEEeeeEEEEECCc--------eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 3578999999999988643 589999999999999876543 344667666654
No 144
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=39.61 E-value=48 Score=26.19 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCEEEEcCCCeEEE-EeCCCcc
Q 027345 140 TLIAKVLNKGDVFVFPIGMIHFQ-FNIGKTN 169 (224)
Q Consensus 140 ~~~~~~L~~GDv~~~P~G~~H~~-~N~G~~~ 169 (224)
......+++||++++...++|.- .|.++..
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~ 208 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPNTSDDP 208 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B-SSST
T ss_pred ceEEeecCCCeEEEEcCCccccCCCCCCcCc
Confidence 34567899999999999999974 4555543
No 145
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=38.28 E-value=3.1e+02 Score=24.99 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=43.5
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCCccEEEEEEecC
Q 027345 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFASLGS 178 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~~~a~~~~~~~s 178 (224)
...-+..+++=++.--+|.+.+. .+- + ...+.++++.+||+|+-..+.-.|.....++-++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~--TEf---G---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWIT--TEF---G---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEE--eec---c---ceeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 34445555555555566776654 332 3 367899999999999998887777777777777653
No 146
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=36.77 E-value=1.1e+02 Score=28.12 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=61.3
Q ss_pred CCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEE-
Q 027345 74 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF- 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~- 152 (224)
..|..|..++..- ++.-+.+.|+.++..-+...+..-.+..+..++|..-++.++.+++ ..+-...|++||-+
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG--~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDG--KPVSVVDLKPGDEVL 323 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4677777775432 2235778899998888776666556889999999999999998862 33557899999954
Q ss_pred -EEcCCCeEEEEe
Q 027345 153 -VFPIGMIHFQFN 164 (224)
Q Consensus 153 -~~P~G~~H~~~N 164 (224)
+++.+--|+-..
T Consensus 324 ~~~~~~~RHfG~~ 336 (344)
T PRK02290 324 GYLEEAARHFGMA 336 (344)
T ss_pred EEecCCcccccce
Confidence 566666676443
No 147
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=36.67 E-value=39 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.6
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHhhh
Q 027345 195 PPINPDFLGKAFQLDPNVVKDLQKK 219 (224)
Q Consensus 195 p~~~~~vla~af~~~~~~v~~l~~~ 219 (224)
|.++++-+|++|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4689999999999999999999874
No 148
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.24 E-value=60 Score=32.83 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=33.6
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEE
Q 027345 102 YAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 102 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
+.||..+-..=.+ -+|+.||++|.+++.-.+.+ +......|++||.+
T Consensus 447 f~pge~iireGd~-v~~myFI~rG~le~~~~~~g---~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 447 FTPGEYIIREGDP-VTDMYFIVRGSLESITTDGG---GFFVVAILGPGDFF 493 (727)
T ss_pred cCCCCeEEecCCc-cceeEEEEeeeEEEEEccCC---ceEEEEEecCCCcc
Confidence 5566666555566 68999999999976543321 44557899999987
No 149
>PF13994 PgaD: PgaD-like protein
Probab=35.94 E-value=44 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=21.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHHhhh
Q 027345 196 PINPDFLGKAFQLDPNVVKDLQKK 219 (224)
Q Consensus 196 ~~~~~vla~af~~~~~~v~~l~~~ 219 (224)
+++++-+|+.|+++++.++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999874
No 150
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=35.36 E-value=45 Score=27.10 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=22.6
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHhhh
Q 027345 195 PPINPDFLGKAFQLDPNVVKDLQKK 219 (224)
Q Consensus 195 p~~~~~vla~af~~~~~~v~~l~~~ 219 (224)
|.++++-+|+.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4689999999999999999999874
No 151
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=32.50 E-value=62 Score=32.99 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=43.4
Q ss_pred EEEcCCCcCC-CccCCCCcEEEEEEeCEEEEE----------------EEecCCCCCeEEEEEEcCCCEEEEcCCCeEEE
Q 027345 100 IDYAPYGQNP-PHTHPRATEILVVLEGTLYVG----------------FVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 100 v~l~pgg~~p-pH~Hp~a~Ei~yVl~G~~~~~----------------~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
.-+++||... -|.+. +.-++|-|.++..-. |++. ..+.+.-.|++|+-++||.|.+|..
T Consensus 141 fhidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~---VdkC~~~~l~~g~T~~iPsGwIhAV 216 (776)
T KOG1633|consen 141 FHIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDC---VDKCYKCILKQGQTLFIPSGWIHAV 216 (776)
T ss_pred cccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCc---cceeEEEEeccCceEecccceeEee
Confidence 3466666543 36664 677777776653211 1111 2456678899999999999999988
Q ss_pred EeCCCccE
Q 027345 163 FNIGKTNA 170 (224)
Q Consensus 163 ~N~G~~~a 170 (224)
+-..+.-+
T Consensus 217 ~Tp~d~l~ 224 (776)
T KOG1633|consen 217 LTPTDCLV 224 (776)
T ss_pred ecCcchhe
Confidence 76544433
No 152
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=32.33 E-value=48 Score=22.34 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=17.2
Q ss_pred CHHHHHhhcCCCHHHHHHHhhhh
Q 027345 198 NPDFLGKAFQLDPNVVKDLQKKF 220 (224)
Q Consensus 198 ~~~vla~af~~~~~~v~~l~~~~ 220 (224)
.+.-|.+.++++++++++||+++
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 56688899999999999999875
No 153
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=31.74 E-value=1.5e+02 Score=27.48 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=61.3
Q ss_pred CCCceEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEE-
Q 027345 74 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF- 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~- 152 (224)
..|..|..++..- ++.-+.+.|+.++..-+...+-..++.++..++|...++.+..+++ ..+-...|++||-+
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G--~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDG--EPVSVTELKPGDEVL 333 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4566777665432 1234678888888887765555557899999999999999998762 33557899999955
Q ss_pred -EEcCCCeEEEEeC
Q 027345 153 -VFPIGMIHFQFNI 165 (224)
Q Consensus 153 -~~P~G~~H~~~N~ 165 (224)
++..+--|+-...
T Consensus 334 ~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 334 VYLEEAGRHFGMKI 347 (354)
T ss_pred EEecCCCcccceEe
Confidence 5666777765433
No 154
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=31.64 E-value=52 Score=20.47 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=18.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHHhhhhc
Q 027345 196 PINPDFLGKAFQLDPNVVKDLQKKFI 221 (224)
Q Consensus 196 ~~~~~vla~af~~~~~~v~~l~~~~~ 221 (224)
+.+..-+++.++++..+|.+..++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 47888999999999999999999875
No 155
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=31.33 E-value=65 Score=25.96 Aligned_cols=37 Identities=22% Similarity=0.595 Sum_probs=24.7
Q ss_pred CCCCcceEeecCCCCCcceecCcccCCCCCCCCCCeeee
Q 027345 25 PSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLS 63 (224)
Q Consensus 25 ~~~~~dfcv~~~~~~~~~~~~g~~ck~~~~~~~~df~~~ 63 (224)
|.-..|||++.+.....+.+-|.--..| ...+||+|.
T Consensus 105 PaG~YDy~I~~P~~~~kiwIaGd~g~~~--tr~dDy~fE 141 (161)
T PF10365_consen 105 PAGTYDYCIAAPQPGGKIWIAGDGGDGP--TRGDDYVFE 141 (161)
T ss_pred cCceeEEEEecCCCCCeEEEecCCCCCC--ccccceEEe
Confidence 5668899999665545677766432222 347899996
No 156
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=29.99 E-value=19 Score=36.59 Aligned_cols=60 Identities=18% Similarity=0.077 Sum_probs=36.6
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCE---EEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 102 YAPYGQNPPHTHPRATEILVVLEGT---LYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 102 l~pgg~~ppH~Hp~a~Ei~yVl~G~---~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
.+-|..+++-.||-.+.-.|.-++- +.-.++ -+-.+++=..||.++||+|.+|.++|.-.
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyG------Ve~WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYG------VEPWTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHHHHHHHHHhC------CCccchhhcccceEEecCCCcHHhhhhhh
Confidence 3444455666677655555554431 111111 11235677889999999999999999753
No 157
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=29.30 E-value=1.2e+02 Score=20.33 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=21.7
Q ss_pred EEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEeCC
Q 027345 129 VGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 129 ~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~G 166 (224)
+.+-++. ++.++..|++|..+.--+|.++.-.-+|
T Consensus 12 VQlTD~K---gr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 12 VQLTDPK---GRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEETT-----EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEccCC---CCeeeEEECCCCeEEcCccccchhheec
Confidence 4555664 7888999999999999988776543344
No 158
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=28.99 E-value=79 Score=26.11 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=22.1
Q ss_pred CcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcC
Q 027345 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 116 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 156 (224)
..-++|+++|++.+.... ....|.+||.+++..
T Consensus 135 ~~~l~~~~~G~~~i~~~~--------~~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEGG--------NCISLSAGDLLLIDD 167 (184)
T ss_dssp SEEEEEESSS-EEECCCE--------EEEEE-TT-EEEEES
T ss_pred CEEEEEEeeCcEEEecCC--------CceEcCCCCEEEEeC
Confidence 567789999987754321 158999999998877
No 159
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=28.98 E-value=67 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=27.6
Q ss_pred EEEEcCCCEEEEcCCCeEEE-EeCCCcc-EEEEEEecCCC
Q 027345 143 AKVLNKGDVFVFPIGMIHFQ-FNIGKTN-AVAFASLGSQF 180 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~-~N~G~~~-a~~~~~~~s~~ 180 (224)
...+++||++++..-++|.- .|.++.+ ..++..|++.+
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~ 251 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVE 251 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCC
Confidence 46789999999999999974 5666554 44555676543
No 160
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=24.56 E-value=1.4e+02 Score=24.81 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=33.2
Q ss_pred EEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEe
Q 027345 118 EILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 118 Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
-+..-++|++.+.+... +.++...|.+|+-+++..+.+-.+..
T Consensus 131 ~~~~~l~G~G~v~l~~~----G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSGY----GAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEEESSCEEEEEEC----CSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred cEEEEEEEEEEEEEEeC----CcEEEEEccCCceEEEcCCCEEEECC
Confidence 34456789999888776 67888999999999999988776654
No 161
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=23.99 E-value=1.3e+02 Score=24.52 Aligned_cols=27 Identities=37% Similarity=0.336 Sum_probs=11.6
Q ss_pred CchhhHHHHHHHHHHHHhhhhccCCCC
Q 027345 1 MKAVQFLSGFALLALASLLASAYDPSP 27 (224)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~d~~~ 27 (224)
|+...+.++++.+++++..+.+.|+++
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~~~~ 27 (185)
T PRK15194 1 MKLRFISSAIASLLFVAGAAYAADPTP 27 (185)
T ss_pred CchHHHHHHHHHHHHHhhhhhhccccc
Confidence 666433322222223334445566544
No 162
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.81 E-value=75 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=13.8
Q ss_pred CchhhHHHHHHHHHHHHhhhhccCCC
Q 027345 1 MKAVQFLSGFALLALASLLASAYDPS 26 (224)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~d~~ 26 (224)
|..+++.+|++|+ |+-++|.-||++
T Consensus 1 mnn~Si~VLlaLv-LIg~fAVqSdag 25 (71)
T PF04202_consen 1 MNNLSIAVLLALV-LIGSFAVQSDAG 25 (71)
T ss_pred CCchhHHHHHHHH-HHhhheeeecCc
Confidence 5665555544443 334556677775
No 163
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=23.71 E-value=60 Score=29.90 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=16.3
Q ss_pred EEEEcCCCEEEEcCCCeEEEE
Q 027345 143 AKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~~ 163 (224)
...|++|+.+++|+|.+|...
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl 271 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYL 271 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEE
T ss_pred EEEecCCceEEecCCCccccc
Confidence 468999999999999999643
No 164
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=23.57 E-value=1.1e+02 Score=30.64 Aligned_cols=58 Identities=28% Similarity=0.297 Sum_probs=36.7
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCCCCCeEEEEEEcCCCEEEEcCCCeEEEEe
Q 027345 95 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
+.+....-+||.+. -|+-..-+.+.||++|++++-=.++ +...|.+||+| |-..|..|
T Consensus 569 m~f~~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQDDE-------VVAILGKGDVF----GD~FWK~~ 626 (971)
T KOG0501|consen 569 MEFQTNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQDDE-------VVAILGKGDVF----GDEFWKEN 626 (971)
T ss_pred HHHHhccCCCccee-eecCCccceEEEEEecceEEeecCc-------EEEEeecCccc----hhHHhhhh
Confidence 33333445665543 3444445689999999999764333 36899999998 54445444
No 165
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=22.85 E-value=86 Score=28.76 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=53.6
Q ss_pred cccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEecCC------C-------------------
Q 027345 83 NVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ------L------------------- 137 (224)
Q Consensus 83 ~~~~~P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~------~------------------- 137 (224)
+.-.+|+.++.++.+.....+.|...|.|.-|. .-++.=+.|+.++.+.-+.+ .
T Consensus 238 Dyc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~ 316 (355)
T KOG2132|consen 238 DYCSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKA 316 (355)
T ss_pred ceeecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhh
Confidence 334566666544555544445588889997664 66777788888877764421 0
Q ss_pred -----CCeEEEEEEcCCCEEEEcCCCeEEEEeC
Q 027345 138 -----NNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 138 -----~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
..+.....|++||++++|+-..|+.+..
T Consensus 317 fp~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 317 FPKFAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred hhHHHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 0011123689999999999999987643
No 166
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.80 E-value=78 Score=19.41 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=6.4
Q ss_pred CcceecCcccC
Q 027345 40 DGVFVNGKFCK 50 (224)
Q Consensus 40 ~~~~~~g~~ck 50 (224)
+.+.+|| -|+
T Consensus 24 G~ViING-~C~ 33 (36)
T PF08194_consen 24 GNVIING-KCI 33 (36)
T ss_pred CeEEECc-eee
Confidence 4578888 344
No 167
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=21.50 E-value=1e+02 Score=18.27 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=19.2
Q ss_pred CCHHHHHhhcCCCHHHHHHHhhhhc
Q 027345 197 INPDFLGKAFQLDPNVVKDLQKKFI 221 (224)
Q Consensus 197 ~~~~vla~af~~~~~~v~~l~~~~~ 221 (224)
++.+-+|...++..++|.++-++|.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5677889999999999999888775
No 168
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=20.79 E-value=2.8e+02 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEcCCCEEEEcCCCeEEEEeCCC
Q 027345 143 AKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~~N~G~ 167 (224)
...+++|++++||...+|...-+..
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccC
Confidence 5788999999999999998876443
Done!