BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027346
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 314 bits (804), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 146/178 (82%), Positives = 160/178 (89%), Gaps = 1/178 (0%)
Query: 48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
PH LE+SWTFWFD P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADF
Sbjct: 1 MPHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
YCFK+KIEPKWEDP+CANGGKWT +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV
Sbjct: 61 YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 168 RARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYTT 224
R R EKIS+WTKNASNEAAQ+SIGKQWKE LDY++T+GFIFH+DA K D +KN+Y
Sbjct: 121 RGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 178
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 284 bits (727), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 129/176 (73%), Positives = 154/176 (87%), Gaps = 1/176 (0%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPLE++WTFWFDNP KS+Q WGS++ I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
FKNKIEPKWEDP+CANGGKWT+ +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR
Sbjct: 62 FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRS-KNRYTT 224
+QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HEDAK ++ KNRYT
Sbjct: 122 KQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV 177
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 280 bits (717), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 128/176 (72%), Positives = 153/176 (86%), Gaps = 1/176 (0%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPLE++WTFWFDNP KS+Q WGS++ I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
FKNKIEPKWEDP+ ANGGKWT+ +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR
Sbjct: 62 FKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRS-KNRYTT 224
+QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HEDAK ++ KNRYT
Sbjct: 122 KQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV 177
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 106/184 (57%), Gaps = 12/184 (6%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 37 HPLQNRWALWF---FKKDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
VNVRA+ +KI++WT N A IG+ +KE L IG+ H D K + +KN
Sbjct: 154 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 213
Query: 221 RYTT 224
R+
Sbjct: 214 RFVV 217
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 10/181 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL + WT W+ + +W I +F +VE+FWSLYN+I PS++ +G+D+
Sbjct: 70 HPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVN 166
FK I P WED GG+W + K D WL LL +IGE FDH D+ICGAV+N
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVIN 186
Query: 167 VRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKNRY 222
+R + KIS+WT + +NE A + IG + ++ L ++++ + H+D K + K+ Y
Sbjct: 187 IRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIY 246
Query: 223 T 223
T
Sbjct: 247 T 247
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 37 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
VNVRA+ +KI++WT N A IG+ +KE L IG+ H D K + +KN
Sbjct: 154 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 213
Query: 221 RYTT 224
R+
Sbjct: 214 RFVV 217
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 60 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 116
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 117 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 176
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
VNVRA+ +KI++WT N A IG+ +KE L IG+ H D K + +KN
Sbjct: 177 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 236
Query: 221 RYTT 224
R+
Sbjct: 237 RFVV 240
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 143 bits (360), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 11 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 67
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 68 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 127
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
VNVRA+ +KI++WT N A IG+ +KE L IG+ H D K + +KN
Sbjct: 128 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 187
Query: 221 RYTT 224
R+
Sbjct: 188 RFVV 191
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 10 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 66
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 67 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 126
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
VNVRA+ +KI++WT N A IG+ +KE L IG+ H D K + +KN
Sbjct: 127 VNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 186
Query: 221 RYTT 224
R+
Sbjct: 187 RFVV 190
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 10/170 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL+ W W+ + W ++ + F +VE+FWSLYN+I S L G+D+Y
Sbjct: 3 HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK I+P WED GG+W V+ K K D WL L+A+IGEQF D+G+ ICGAV
Sbjct: 60 FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDA 212
VNVR + +K+SLWT+++ + + IG+ K L+ DT I + H+D+
Sbjct: 120 VNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDS 169
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 4/160 (2%)
Query: 44 AVMQQP--HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPS 99
AV+ P HPL++++TFW+ P + ++ +++ I TF+SVE+FW Y+++ P
Sbjct: 7 AVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPG 66
Query: 100 KLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDE 159
L +DF+ FK I+P WED NGGKW + KG + W +LAM+GEQF G+E
Sbjct: 67 DLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEE 126
Query: 160 ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 199
ICGAVV+VR +++ IS+W K AS++A I + +L+
Sbjct: 127 ICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 166
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Query: 49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
PHPL+ SW+++ F K W + + TFS++E+FWS+ + P ++ G D Y
Sbjct: 9 PHPLQDSWSYYL---FQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 109 CFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDE---ICGAV 164
FK+ I PKWEDP NGG+W + + + D W L+ +IG +D +E ICGAV
Sbjct: 66 MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNR 221
R+R K+S+W + + E +SIG++ KE L+ DTI F D RS+ R
Sbjct: 126 FQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYF----QPVSDQRSQTR 178
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL WT W+ P A K +W +R + +F +VEEFW++ NI P +L + +D++
Sbjct: 37 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGD-EICGAVV 165
F+N + P+WED A GGKW+ +GK D WL TLLA+IGE D D +I G V+
Sbjct: 96 FRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTLLAVIGETIDEDDSQINGVVL 154
Query: 166 NVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202
++R K +LWTK+ E + IG ++K++L +D
Sbjct: 155 SIRKGGNKFALWTKSEDKEPL-LRIGGKFKQVLKLTD 190
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL WT W+ P A K +W +R + +F +VEEFW++ NI P +L + +D++
Sbjct: 37 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTV-IFPKGKS-DTSWLYTLLAMIGEQFDHGD-EICGAVVN 166
F+N + P+WED A GGKW+ + KG D WL TLLA+IGE D D +I G V++
Sbjct: 96 FRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVVLS 155
Query: 167 VRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202
+R K +LWTK E + IG ++K++L +D
Sbjct: 156 IRKGGNKFALWTKCEDKEPL-LRIGGKFKQVLKLTD 190
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
PL WTFW D + A S+++ IYT +V+ FWS+YNNI + L + ++
Sbjct: 31 PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFD----HGDEICGAVVN 166
+ + P WE+ A GG W + PK + T W LLA IGEQF DEI G V+
Sbjct: 91 RGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVS 150
Query: 167 VRARQEKISLWTKNAS 182
VR R++ + +W NAS
Sbjct: 151 VRDREDVVQVWNVNAS 166
>pdb|1YTL|A Chain A, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|B Chain B, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|C Chain C, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|D Chain D, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
Length = 174
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 144 YTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT 203
Y L+ M+G + HG ++ A+ N +++ N A MS G WK+ DY
Sbjct: 109 YDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPN--ADMSFGNLWKKEEDYLKL 166
Query: 204 IGFIFHE 210
+ I E
Sbjct: 167 LDEILAE 173
>pdb|3MGJ|A Chain A, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a.
pdb|3MGJ|B Chain B, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a
Length = 118
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 114 IEPKWEDPVCANGGKWTVI-FPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
I PK D + GG + V+ F GK T Y + +IG H DEI + ++ A
Sbjct: 17 ILPKVFDKILDXGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDLGA 73
>pdb|1MHZ|B Chain B, Methane Monooxygenase Hydroxylase
pdb|1MHY|B Chain B, Methane Monooxygenase Hydroxylase
Length = 395
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHD 215
V + A+ EK++ T +A A + WK +DY+D IGF D K D
Sbjct: 339 VGLYAKVEKVAGATDSAGVSEALQRVFGDWK--IDYADKIGFRVDVDQKVD 387
>pdb|2WC6|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With Bombykol And Water To Arg 110
pdb|2WCH|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With Bombykal
pdb|2WCJ|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With (10e,12z)-Tetradecadien-1-Ol
pdb|2WCK|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) Without Ligand
pdb|2WCL|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With (8e,10z)-Hexadecadien-1-Ol
pdb|2WCM|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With (10e)-Hexadecen-12-Yn-1-Ol
Length = 141
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 64 FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
F K+ + S S+ + FWS ++ H +G C NK +D
Sbjct: 12 FGKTLEECREESGLSVDILDEFKHFWSDDFDVVHRE---LGCAIICMSNKFSLMDDDVRM 68
Query: 124 --ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
N ++ FP G+ + L+ +QFD + C VV V A
Sbjct: 69 HHVNMDEYIKSFPNGQVLAEKMVKLIHNCEKQFDTETDDCTRVVKVAA 116
>pdb|2WC5|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2)
Length = 142
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 64 FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
F K+ + S S+ + FWS ++ H +G C NK +D
Sbjct: 13 FGKTLEECREESGLSVDILDEFKHFWSDDFDVVHRE---LGCAIICMSNKFSLMDDDVRM 69
Query: 124 --ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
N ++ FP G+ + L+ +QFD + C VV V A
Sbjct: 70 HHVNMDEYIKSFPNGQVLAEKMVKLIHNCEKQFDTETDDCTRVVKVAA 117
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 96 HHPSKLAVGADFY--------CFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLL 147
++PS +V D++ C K+ IE K ED +CA G + WL +
Sbjct: 545 YYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604
Query: 148 AMIGEQ 153
I E+
Sbjct: 605 NRIAEE 610
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 147 LAMIGEQFDHGDEICGAVVNVRARQEK 173
+ ++GEQF G+ I A+ N R +EK
Sbjct: 252 MRLMGEQFVTGETIAEALANARKLEEK 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,282,771
Number of Sequences: 62578
Number of extensions: 285013
Number of successful extensions: 415
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 29
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)