Query 027346
Match_columns 224
No_of_seqs 135 out of 672
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670 Translation initiation 100.0 1.7E-61 3.7E-66 410.7 16.9 177 45-224 30-212 (212)
2 PF01652 IF4E: Eukaryotic init 100.0 1.3E-51 2.9E-56 341.3 17.5 159 51-209 1-165 (165)
3 PTZ00040 translation initiatio 100.0 2.5E-50 5.3E-55 350.9 17.3 165 46-210 34-231 (233)
4 KOG1669 Predicted mRNA cap-bin 100.0 5.5E-50 1.2E-54 332.6 11.4 172 43-214 23-196 (208)
5 COG5053 CDC33 Translation init 100.0 4.6E-45 9.9E-50 306.4 13.6 170 45-215 32-207 (217)
6 PF08939 DUF1917: Domain of un 96.5 0.021 4.7E-07 50.7 9.7 80 124-209 148-237 (243)
7 PF11525 CopK: Copper resistan 44.7 14 0.0003 27.0 1.5 21 99-120 10-30 (73)
8 KOG0080 GTPase Rab18, small G 37.0 53 0.0012 28.2 4.0 36 144-179 26-67 (209)
9 PF08977 BOFC_N: Bypass of For 31.7 26 0.00056 24.0 1.1 30 80-112 21-50 (51)
10 COG3822 ABC-type sugar transpo 29.1 48 0.001 28.9 2.5 30 106-135 90-125 (225)
11 PHA02744 hypothetical protein; 20.1 56 0.0012 24.8 1.1 38 157-194 40-82 (88)
No 1
>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-61 Score=410.75 Aligned_cols=177 Identities=51% Similarity=0.960 Sum_probs=167.8
Q ss_pred CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (224)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 124 (224)
....+|||++.|||||.++.++ ..|++.|+.|.+|+|||+||++|++|++||+|+.+|+|+|||+||+||||||+|+
T Consensus 30 ~~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~ 106 (212)
T KOG1670|consen 30 ENHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANK 106 (212)
T ss_pred ccccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCcccc
Confidence 3457999999999999988754 3899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecC---CChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCC
Q 027346 125 NGGKWTVIFPK---GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS 201 (224)
Q Consensus 125 nGG~w~i~~~k---~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~ 201 (224)
+||||+|.+++ +.+|.+|+++||+||||+|+++++|||+|+++|++++|||||++++.++..++.||..||++|+++
T Consensus 107 ~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~IG~~~Ke~L~~~ 186 (212)
T KOG1670|consen 107 NGGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLRIGRVLKEVLGLP 186 (212)
T ss_pred CCCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHHHHHHHHHHHHhCCC
Confidence 99999999986 458999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CeeeEEEccccc--cCCCCCceeeC
Q 027346 202 -DTIGFIFHEDAK--HDNRSKNRYTT 224 (224)
Q Consensus 202 -~~i~f~~H~~s~--~~~~~~~~~~~ 224 (224)
.+|+|+.|.++. .+|++|++|++
T Consensus 187 ~~~i~y~~H~ds~~k~~s~~K~~~tv 212 (212)
T KOG1670|consen 187 RDVIGYQLHKDSSKKSGSTAKNRYTV 212 (212)
T ss_pred cceEEEEechhhHhhcCCcccceecC
Confidence 799999999998 78899999985
No 2
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=1.3e-51 Score=341.29 Aligned_cols=159 Identities=48% Similarity=0.902 Sum_probs=147.2
Q ss_pred CCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCCCcEEE
Q 027346 51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT 130 (224)
Q Consensus 51 pL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~nGG~w~ 130 (224)
||+++|||||+......+..+|.++|++|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|+
T Consensus 1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~ 80 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI 80 (165)
T ss_dssp EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence 89999999999655445568999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC---ChHHHHHHHHHHHhcCCCCCC-CceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC--ee
Q 027346 131 VIFPKG---KSDTSWLYTLLAMIGEQFDHG-DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TI 204 (224)
Q Consensus 131 i~~~k~---~~d~~W~~lll~~IGe~f~~~-~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~--~i 204 (224)
|++++. .++++|++|||++|||+|+.. ++|||||+|+|++.++|+||++++++++.+.+|++.|+++|+++. .|
T Consensus 81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 160 (165)
T PF01652_consen 81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQNRIGKKIKEILNLPPNTKI 160 (165)
T ss_dssp EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHHHHHHHHHHHHHTTTTTSEE
T ss_pred EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHHHHHHHHHHHHhCcCCCCeE
Confidence 999998 899999999999999999865 899999999999999999999999888889999999999999874 69
Q ss_pred eEEEc
Q 027346 205 GFIFH 209 (224)
Q Consensus 205 ~f~~H 209 (224)
+|++|
T Consensus 161 ~y~~H 165 (165)
T PF01652_consen 161 EYKSH 165 (165)
T ss_dssp EEEEH
T ss_pred EEecC
Confidence 99998
No 3
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=2.5e-50 Score=350.92 Aligned_cols=165 Identities=28% Similarity=0.557 Sum_probs=144.9
Q ss_pred CCCCCCCCcceEEEEECCCCc-ccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCce---------------EEE
Q 027346 46 MQQPHPLEHSWTFWFDNPFAK-SKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGAD---------------FYC 109 (224)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~-~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~---------------~~l 109 (224)
...+|||+++|||||+.+... .+..+|.++|++|++|+|||+||++|+||++||+|+.+++ |||
T Consensus 34 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~l 113 (233)
T PTZ00040 34 LSTPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMI 113 (233)
T ss_pred cCCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeee
Confidence 467899999999999977543 3457899999999999999999999999999999998874 999
Q ss_pred ecCCCccCCCCCCCCCCcEEEEEecC-----CChHHHHHHHHHHHhcCCCCCCCceeeEEE----EecCCCcEEEEecCC
Q 027346 110 FKNKIEPKWEDPVCANGGKWTVIFPK-----GKSDTSWLYTLLAMIGEQFDHGDEICGAVV----NVRARQEKISLWTKN 180 (224)
Q Consensus 110 FK~gI~P~WEDp~N~nGG~w~i~~~k-----~~~d~~W~~lll~~IGe~f~~~~~I~Gvvv----s~R~~~~~IsIW~~~ 180 (224)
||+||+||||||+|++||+|+|++.+ ..+|++|++|||++|||+|+.+++|||||| |+|++.+||+||+++
T Consensus 114 FK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~ 193 (233)
T PTZ00040 114 FKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTN 193 (233)
T ss_pred ecCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCC
Confidence 99999999999999999999999965 347999999999999999998999999996 677888999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC--C------CCeeeEEEcc
Q 027346 181 ASNEAAQMSIGKQWKELLD--Y------SDTIGFIFHE 210 (224)
Q Consensus 181 ~~~~~~~~~I~~~lk~~L~--~------~~~i~f~~H~ 210 (224)
+++++.+.+|++.++++|. + ++.+.-++|.
T Consensus 194 ~~d~~~~~~i~~~i~~~l~~~l~~~~~~~~~~~~~~h~ 231 (233)
T PTZ00040 194 LGDQSDRNQLMKEIETCMARRLDGSSGFPPKFDLKSHS 231 (233)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcceecCCcceeeccc
Confidence 9999888999999998762 2 2345566665
No 4
>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-50 Score=332.61 Aligned_cols=172 Identities=37% Similarity=0.716 Sum_probs=162.7
Q ss_pred CCCCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCC
Q 027346 43 TAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV 122 (224)
Q Consensus 43 ~~~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~ 122 (224)
.+.....|||++..+|||.........++|++++++|++|.|||+||++|.||+.|+.|+...++||||+||+|+|||++
T Consensus 23 ~v~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~a 102 (208)
T KOG1669|consen 23 RVLMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKA 102 (208)
T ss_pred ccCCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcC
Confidence 33466789999999999997766556789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC
Q 027346 123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202 (224)
Q Consensus 123 N~nGG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~ 202 (224)
|.|||+|+|+++|+.+.++||+|||+++||+|..+++|||.|+|+|.++++||||+|+.++.....+|++.||.+|++++
T Consensus 103 N~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~~~irdtLk~~L~lp~ 182 (208)
T KOG1669|consen 103 NCNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADTGRIRDTLKRVLELPF 182 (208)
T ss_pred CCCCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred --eeeEEEcccccc
Q 027346 203 --TIGFIFHEDAKH 214 (224)
Q Consensus 203 --~i~f~~H~~s~~ 214 (224)
.++|+.|.+++.
T Consensus 183 ~~vmeYK~H~~~Lr 196 (208)
T KOG1669|consen 183 NTVMEYKNHDDSLR 196 (208)
T ss_pred ceEEEecchhhhhh
Confidence 699999999983
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-45 Score=306.44 Aligned_cols=170 Identities=39% Similarity=0.759 Sum_probs=155.8
Q ss_pred CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (224)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 124 (224)
-++..|||+..|||||..+... ..+.|.+.|+.|++|+|||+||+++++|+.++.||..++|++||+||+|+|||++|.
T Consensus 32 ~f~~~hpl~~~wtlw~l~p~e~-g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~ 110 (217)
T COG5053 32 HFMNKHPLAFHWTLWFLKPPED-GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANM 110 (217)
T ss_pred hHhhcCccccceEEEEecCCcc-chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccC
Confidence 3678999999999999987653 245599999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCC---ChHHHHHHHHHHHhcCCCCC-CCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346 125 NGGKWTVIFPKG---KSDTSWLYTLLAMIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 200 (224)
Q Consensus 125 nGG~w~i~~~k~---~~d~~W~~lll~~IGe~f~~-~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~ 200 (224)
+||+|.+.++.. ..+++|..+|+++||++|+. +.+|||||++.|++++||+||++++.+.+.+.+|+.++|.+|++
T Consensus 111 ~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~l 190 (217)
T COG5053 111 NGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLEL 190 (217)
T ss_pred CCCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhcccc
Confidence 999999999874 37899999999999999974 77899999999999999999999999999999999999999998
Q ss_pred C--CeeeEEEccccccC
Q 027346 201 S--DTIGFIFHEDAKHD 215 (224)
Q Consensus 201 ~--~~i~f~~H~~s~~~ 215 (224)
. ..|+|+.|..++.+
T Consensus 191 s~~~tle~k~heSsk~g 207 (217)
T COG5053 191 SDVETLEYKAHESSKLG 207 (217)
T ss_pred cceeEEEeccccccccc
Confidence 6 47999999855554
No 6
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=96.53 E-value=0.021 Score=50.71 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=56.1
Q ss_pred CCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEe------cCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027346 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV------RARQEKISLWTKNASNEAAQMSIGKQWKEL 197 (224)
Q Consensus 124 ~nGG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~------R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~ 197 (224)
.-.|+|+|-++...+|.+|..+.-+++.+.|. +++-|+. ..+...|.|.+.|..+...+.++.+.|+++
T Consensus 148 v~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~RVl~~Lr~~ 222 (243)
T PF08939_consen 148 VTSGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVMRVLRRLREL 222 (243)
T ss_dssp ---EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHHHHHHHHHHT
T ss_pred cccceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 34899999999999999999999999988773 2444444 123478999999999999999999999776
Q ss_pred cCCCC----eeeEEEc
Q 027346 198 LDYSD----TIGFIFH 209 (224)
Q Consensus 198 L~~~~----~i~f~~H 209 (224)
++-. .|.||+-
T Consensus 223 -gl~~~~~~~i~YK~D 237 (243)
T PF08939_consen 223 -GLVDPDGRPIYYKPD 237 (243)
T ss_dssp -T--S-----EEEEEH
T ss_pred -CCccccccceeecCc
Confidence 6544 6899874
No 7
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=44.67 E-value=14 Score=26.99 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=16.1
Q ss_pred CcCCCCceEEEecCCCccCCCC
Q 027346 99 SKLAVGADFYCFKNKIEPKWED 120 (224)
Q Consensus 99 s~l~~~~~~~lFK~gI~P~WED 120 (224)
-.|..|+.+|+||+|---| ||
T Consensus 10 i~LkDGstvyiFKDGKMam-Ed 30 (73)
T PF11525_consen 10 IPLKDGSTVYIFKDGKMAM-ED 30 (73)
T ss_dssp EEBTTSEEEEEETTS-EEE-EE
T ss_pred EecCCCCEEEEEcCCceeh-hh
Confidence 3688999999999996654 54
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=37.02 E-value=53 Score=28.19 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCC-CCceeeEEE-----EecCCCcEEEEecC
Q 027346 144 YTLLAMIGEQFDH-GDEICGAVV-----NVRARQEKISLWTK 179 (224)
Q Consensus 144 ~lll~~IGe~f~~-~~~I~Gvvv-----s~R~~~~~IsIW~~ 179 (224)
.|+|.++...|+. .+.-.||-| +++.+..+++||-.
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDT 67 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDT 67 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEec
Confidence 5788999999975 344479855 45678899999954
No 9
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=31.69 E-value=26 Score=24.02 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=22.0
Q ss_pred eeeccHHHHHHhccccCCCCcCCCCceEEEecC
Q 027346 80 YTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKN 112 (224)
Q Consensus 80 ~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~ 112 (224)
.++-|.++||+-|..-.. +....++.+||+
T Consensus 21 Eti~s~ed~w~~Y~~WqL---v~q~~~~ivFrk 50 (51)
T PF08977_consen 21 ETIWSMEDFWAKYKGWQL---VDQDDDQIVFRK 50 (51)
T ss_dssp EEEEEHHHHHHHSTTSEE---EEEETTEEEEEE
T ss_pred eeeccHHHHHHhhcCcEE---EEccCCEEEEEc
Confidence 578999999999997542 334456777774
No 10
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=29.10 E-value=48 Score=28.92 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=24.5
Q ss_pred eEEEecCCCccC---C---CCCCCCCCcEEEEEecC
Q 027346 106 DFYCFKNKIEPK---W---EDPVCANGGKWTVIFPK 135 (224)
Q Consensus 106 ~~~lFK~gI~P~---W---EDp~N~nGG~w~i~~~k 135 (224)
-+++++.-+.|| | ||-.|.+||.+++++-+
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~ 125 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWN 125 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEec
Confidence 356777778887 4 88899999999999854
No 11
>PHA02744 hypothetical protein; Provisional
Probab=20.09 E-value=56 Score=24.83 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCceeeEEEEecC-----CCcEEEEecCCCCCHHHHHHHHHHH
Q 027346 157 GDEICGAVVNVRA-----RQEKISLWTKNASNEAAQMSIGKQW 194 (224)
Q Consensus 157 ~~~I~Gvvvs~R~-----~~~~IsIW~~~~~~~~~~~~I~~~l 194 (224)
...|.|+++++.. ..+...+|+|...+....-+..+-+
T Consensus 40 ~~~i~Ga~~~i~gVTAkL~y~~~~~WmrK~~D~~~~P~~~eYf 82 (88)
T PHA02744 40 TTCIHGANTNIAGVSTKLEYNDLKLWLKKQDDISARPDQGDYF 82 (88)
T ss_pred hceeccceEEEccEEEEEEEcCCccceeEcCCCCCCCCHHHhh
Confidence 3457777766543 3577789999887654433444433
Done!