Query 027346
Match_columns 224
No_of_seqs 135 out of 672
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2idr_A Eukaryotic translation 100.0 4.3E-61 1.5E-65 403.2 19.3 176 49-224 1-177 (177)
2 1ipb_A Eukaryotic translation 100.0 2.6E-59 8.9E-64 403.6 18.8 176 46-224 33-217 (217)
3 1ap8_A Translation initiation 100.0 1.2E-58 4.2E-63 398.4 22.5 177 45-224 32-213 (213)
4 3m94_A Translation initiation 100.0 7.9E-59 2.7E-63 393.2 19.8 174 48-224 1-183 (189)
5 1l8b_A Eukaryotic translation 100.0 4.6E-59 1.6E-63 394.8 16.1 176 46-224 6-190 (190)
6 3hxi_A Eukaryotic translation 100.0 4.5E-59 1.6E-63 394.7 13.6 177 45-224 5-189 (189)
7 2jgb_A Eukaryotic translation 100.0 8.7E-58 3E-62 388.4 18.2 169 45-213 10-182 (195)
8 4axg_A Eukaryotic translation 100.0 3.3E-57 1.1E-61 397.4 20.5 178 44-224 64-248 (248)
9 1ztp_A Basophilic leukemia exp 99.5 3E-14 1E-18 124.4 9.3 96 121-223 121-220 (251)
10 2k0q_A Putative uncharacterize 43.2 11 0.00037 26.6 1.7 21 99-120 10-30 (74)
11 1nrp_R Receptor based peptide 31.1 16 0.00054 20.3 0.8 12 112-123 13-24 (26)
12 1nro_R Receptor based peptide 26.6 19 0.00066 20.1 0.6 11 112-122 13-23 (27)
No 1
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=4.3e-61 Score=403.16 Aligned_cols=176 Identities=74% Similarity=1.323 Sum_probs=167.5
Q ss_pred CCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCCCcE
Q 027346 49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK 128 (224)
Q Consensus 49 ~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~nGG~ 128 (224)
+|||+++|||||+.+..+.+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~ 80 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK 80 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence 59999999999998876556789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeeeEEE
Q 027346 129 WTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIF 208 (224)
Q Consensus 129 w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~~i~f~~ 208 (224)
|+|+++|+.+|++|++|||+||||+|+.+++|||||+|+|+++++|+||++++++++.+..|++.|+++|+++..++|++
T Consensus 81 w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~y~~ 160 (177)
T 2idr_A 81 WTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIV 160 (177)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCSCCEEEE
T ss_pred EEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 99999999999999999999999999988999999999999999999999999999889999999999999988899999
Q ss_pred ccccc-cCCCCCceeeC
Q 027346 209 HEDAK-HDNRSKNRYTT 224 (224)
Q Consensus 209 H~~s~-~~~~~~~~~~~ 224 (224)
|.++. .++++|++|+|
T Consensus 161 H~d~~~~~~~~k~~~~~ 177 (177)
T 2idr_A 161 HEDAKRSDKGPKNRYTV 177 (177)
T ss_dssp GGGGGSCSSSCCCSEEC
T ss_pred chhhhhcCCCCccceEC
Confidence 99998 45678999986
No 2
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=2.6e-59 Score=403.63 Aligned_cols=176 Identities=42% Similarity=0.826 Sum_probs=164.3
Q ss_pred CCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCC
Q 027346 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (224)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~n 125 (224)
....|||+++|||||+.+.. ..+|.++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus 33 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~ 109 (217)
T 1ipb_A 33 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 109 (217)
T ss_dssp GTSCCEEEEEEEEEEECCCT---TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred cccCCCCCCeEEEEEEeCCc---ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 45789999999999998752 578999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346 126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 200 (224)
Q Consensus 126 GG~w~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~ 200 (224)
||+|+|++++.. +|.+|++|||+||||+| +.+++|||||||+|+++++|+||++++++++.+..|++.|+++|++
T Consensus 110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l 189 (217)
T 1ipb_A 110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGL 189 (217)
T ss_dssp CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999864 59999999999999999 6788999999999999999999999999998899999999999999
Q ss_pred CC--eeeEEEccccc--cCCCCCceeeC
Q 027346 201 SD--TIGFIFHEDAK--HDNRSKNRYTT 224 (224)
Q Consensus 201 ~~--~i~f~~H~~s~--~~~~~~~~~~~ 224 (224)
++ .|+|++|.++. .+|.+|++|+|
T Consensus 190 ~~~~~i~y~~H~d~~~~~~s~~~~~~~~ 217 (217)
T 1ipb_A 190 PPKIVIGYQSHADTATKSGSTTKNRFVV 217 (217)
T ss_dssp CTTCCCEEEEGGGCCCSTTCCCCCSEEC
T ss_pred CCCCeEEEEEchHhhhccCCCCceeeeC
Confidence 75 69999999998 56778999986
No 3
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=1.2e-58 Score=398.44 Aligned_cols=177 Identities=35% Similarity=0.768 Sum_probs=163.8
Q ss_pred CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (224)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 124 (224)
....+|||+++|||||+.+.. .+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus 32 ~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~ 110 (213)
T 1ap8_A 32 HFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA 110 (213)
T ss_dssp CCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred CCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence 455899999999999998864 3467899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEec-C-CChHHHHHHHHHHHhcCCCCCCC-ceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCC
Q 027346 125 NGGKWTVIFP-K-GKSDTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS 201 (224)
Q Consensus 125 nGG~w~i~~~-k-~~~d~~W~~lll~~IGe~f~~~~-~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~ 201 (224)
+||||+|+++ + ..+|.+|++|||++|||+|+.++ +|||||+|+|+++++|+||++++ +++.+..|++.||++|+++
T Consensus 111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~~~Ig~~lk~~L~l~ 189 (213)
T 1ap8_A 111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEPLLRIGGKFKQVLKLT 189 (213)
T ss_dssp TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHHHHHHHHHHHHhCCC
Confidence 9999999984 3 47899999999999999998766 89999999999999999999998 8888999999999999995
Q ss_pred --CeeeEEEccccccCCCCCceeeC
Q 027346 202 --DTIGFIFHEDAKHDNRSKNRYTT 224 (224)
Q Consensus 202 --~~i~f~~H~~s~~~~~~~~~~~~ 224 (224)
..++|++|.++.. +++|++|++
T Consensus 190 ~~~~i~y~~H~d~~~-~~~k~~~~~ 213 (213)
T 1ap8_A 190 DDGHLEFFPHSSANG-RHPQPSITL 213 (213)
T ss_dssp SSCCCEEECGGGGGC-CCSCCSEEC
T ss_pred CCCeEEEEEchhhhc-ccCccceEC
Confidence 4799999999986 888999986
No 4
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=7.9e-59 Score=393.18 Aligned_cols=174 Identities=39% Similarity=0.814 Sum_probs=160.1
Q ss_pred CCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCCCc
Q 027346 48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG 127 (224)
Q Consensus 48 ~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~nGG 127 (224)
.+|||+++|||||+.+. ...+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus 1 ~~HpL~~~Wt~W~~~~~---~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG 77 (189)
T 3m94_A 1 MRHPLQCHWALWYLKAD---RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG 77 (189)
T ss_dssp CCCEEEEEEEEEEECCC---SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred CCCCCCCcEEEEEECCC---CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence 37999999999998764 257899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC----ChHHHHHHHHHHHhcCCCC-CCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC
Q 027346 128 KWTVIFPKG----KSDTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202 (224)
Q Consensus 128 ~w~i~~~k~----~~d~~W~~lll~~IGe~f~-~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~ 202 (224)
+|+|++++. .+|.+|++|||++|||+|+ .+++|||||||+|+++++|+||++++++++.+..|++.||++|+++.
T Consensus 78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~Ig~~lk~~L~l~~ 157 (189)
T 3m94_A 78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPD 157 (189)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCT
T ss_pred EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCcCC
Confidence 999999875 3699999999999999995 68999999999999999999999999999899999999999999974
Q ss_pred --eeeEEEccccc--cCCCCCceeeC
Q 027346 203 --TIGFIFHEDAK--HDNRSKNRYTT 224 (224)
Q Consensus 203 --~i~f~~H~~s~--~~~~~~~~~~~ 224 (224)
.|+|++|.+++ .+|++|++|+|
T Consensus 158 ~~~i~y~~H~d~~~~~~s~~k~~~~v 183 (189)
T 3m94_A 158 TEPIRYEVHKDSSVRTGSMVKPRIVI 183 (189)
T ss_dssp TSCEEEEECC-----CCSCCCCSEEE
T ss_pred CCEEEEEEchHhhhccCCCCceEEEE
Confidence 69999999997 78889999985
No 5
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=4.6e-59 Score=394.78 Aligned_cols=176 Identities=42% Similarity=0.825 Sum_probs=158.4
Q ss_pred CCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCC
Q 027346 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (224)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~n 125 (224)
...+|||+++|||||+.+.+ ..+|.++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus 6 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~ 82 (190)
T 1l8b_A 6 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 82 (190)
T ss_dssp ---CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred ccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 45789999999999998753 468999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346 126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 200 (224)
Q Consensus 126 GG~w~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~ 200 (224)
||+|+|++++.. +|.+|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++.+..|++.|+++|++
T Consensus 83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l 162 (190)
T 1l8b_A 83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGL 162 (190)
T ss_dssp CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999998753 59999999999999999 5688999999999999999999999999998899999999999999
Q ss_pred CC--eeeEEEccccc--cCCCCCceeeC
Q 027346 201 SD--TIGFIFHEDAK--HDNRSKNRYTT 224 (224)
Q Consensus 201 ~~--~i~f~~H~~s~--~~~~~~~~~~~ 224 (224)
++ .|+|++|.+++ .+|.+|++|++
T Consensus 163 ~~~~~~~y~~H~d~~~~~~~~~~~~~~~ 190 (190)
T 1l8b_A 163 PPKIVIGYQSHADTATKSGSTTKNRFVV 190 (190)
T ss_dssp CTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred CCCCeEEEEEcHHHHhccCCCCceeeeC
Confidence 64 69999999988 56778999986
No 6
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=4.5e-59 Score=394.67 Aligned_cols=177 Identities=31% Similarity=0.680 Sum_probs=163.2
Q ss_pred CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (224)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 124 (224)
.+...|||+++|||||+.+.. ..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus 5 ~~~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~ 81 (189)
T 3hxi_A 5 SPEFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNE 81 (189)
T ss_dssp --CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHH
T ss_pred CCCccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCC
Confidence 356789999999999997753 36899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCC-ChHHHHHHHHHHHhcCCC-CCCCc--eeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346 125 NGGKWTVIFPKG-KSDTSWLYTLLAMIGEQF-DHGDE--ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 200 (224)
Q Consensus 125 nGG~w~i~~~k~-~~d~~W~~lll~~IGe~f-~~~~~--I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~ 200 (224)
+||+|+|++++. .+|.+|++|||++|||+| +.+++ |||||+|+|+++++|+||++++++++.+..|++.||++|++
T Consensus 82 ~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l 161 (189)
T 3hxi_A 82 NGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLEL 161 (189)
T ss_dssp TCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCc
Confidence 999999999997 589999999999999999 55667 99999999999999999999999998899999999999999
Q ss_pred CC--eeeEEEccccc--cCCCCCceeeC
Q 027346 201 SD--TIGFIFHEDAK--HDNRSKNRYTT 224 (224)
Q Consensus 201 ~~--~i~f~~H~~s~--~~~~~~~~~~~ 224 (224)
++ .|+|++|++++ .+|.++++|+|
T Consensus 162 ~~~~~i~y~~H~d~~~~~~s~~~~~~~~ 189 (189)
T 3hxi_A 162 EDTIYFQPVSDQRSQTRGSDICTGKYEI 189 (189)
T ss_dssp CSCCEEEEHHHHHHCCTTCC-CCCSEEC
T ss_pred CCCCeEEEEEchhhhhcCCCCCCceEeC
Confidence 85 49999999987 66778999986
No 7
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=8.7e-58 Score=388.39 Aligned_cols=169 Identities=37% Similarity=0.733 Sum_probs=158.4
Q ss_pred CCCCCCCCCcceEEEEECCCC--cccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCC
Q 027346 45 VMQQPHPLEHSWTFWFDNPFA--KSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV 122 (224)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~--~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~ 122 (224)
+....|||+++|||||+.... +.+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus 10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~ 89 (195)
T 2jgb_A 10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA 89 (195)
T ss_dssp CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence 346789999999999997532 224578999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC
Q 027346 123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202 (224)
Q Consensus 123 N~nGG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~ 202 (224)
|++||+|+|++++..+|++|++|||+||||+|+.+++|||||+|+|.++++|+||++++++++.+..|++.|+++|++++
T Consensus 90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~ 169 (195)
T 2jgb_A 90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPP 169 (195)
T ss_dssp TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHCCCCT
T ss_pred CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999864
Q ss_pred --eeeEEEccccc
Q 027346 203 --TIGFIFHEDAK 213 (224)
Q Consensus 203 --~i~f~~H~~s~ 213 (224)
.|+|++|++++
T Consensus 170 ~~~~~y~~H~d~~ 182 (195)
T 2jgb_A 170 NTIMEYKTHTDSI 182 (195)
T ss_dssp TCCEEEEEHHHHH
T ss_pred CCeEEEEEchHhh
Confidence 69999999998
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-57 Score=397.36 Aligned_cols=178 Identities=38% Similarity=0.824 Sum_probs=163.2
Q ss_pred CCCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCC
Q 027346 44 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123 (224)
Q Consensus 44 ~~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N 123 (224)
+....+|||+++|||||+.+.. ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|
T Consensus 64 ~~~~~kHpL~~~WtlW~~~~~~---~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N 140 (248)
T 4axg_A 64 TEHLYKHPLMNVWTLWYLENDR---SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAAN 140 (248)
T ss_dssp --CCCCCEEEEEEEEEEESCSC---CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTT
T ss_pred cccccCCCCCCeEEEEEeeCCC---ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccC
Confidence 3456789999999999997643 4689999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCC---hHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346 124 ANGGKWTVIFPKGK---SDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 200 (224)
Q Consensus 124 ~nGG~w~i~~~k~~---~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~ 200 (224)
++||+|+|++.+.. +|++|++|||+||||+|+.+++|||||+|+|+++++|+||++++++++.+..|++.|+++|++
T Consensus 141 ~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~~I~~~lk~~L~l 220 (248)
T 4axg_A 141 KQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRL 220 (248)
T ss_dssp TTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHTTC
T ss_pred CCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHHHHHHHHHHHHhCC
Confidence 99999999998754 589999999999999999889999999999999999999999999999999999999999998
Q ss_pred C--CeeeEEEccccc--cCCCCCceeeC
Q 027346 201 S--DTIGFIFHEDAK--HDNRSKNRYTT 224 (224)
Q Consensus 201 ~--~~i~f~~H~~s~--~~~~~~~~~~~ 224 (224)
+ ..|+|+.|.+++ .+|++|++|+|
T Consensus 221 ~~~~~i~yk~H~ds~~~~~s~~k~~y~v 248 (248)
T 4axg_A 221 GRNNSLQYQLHKDTMVKQGSNVKSIYTL 248 (248)
T ss_dssp CTTSCEEEEETGGGCCCC--CCCCSEEC
T ss_pred CCCCeEEEeehhhhhhccCCCCceeEeC
Confidence 5 469999999997 78889999986
No 9
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=99.52 E-value=3e-14 Score=124.39 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCCCCCcEEEEEecC-CChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCC---CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027346 121 PVCANGGKWTVIFPK-GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRAR---QEKISLWTKNASNEAAQMSIGKQWKE 196 (224)
Q Consensus 121 p~N~nGG~w~i~~~k-~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~---~~~IsIW~~~~~~~~~~~~I~~~lk~ 196 (224)
+.|..||||+|.+.+ ..+|.+|+++++++|+++ +||++|+.|.. ..+|+||+++..+...+++|++.||+
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~RV~~~Lre 194 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA 194 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 458999999999988 679999999999999765 59999999986 79999999999999999999999999
Q ss_pred HcCCCCeeeEEEccccccCCCCCceee
Q 027346 197 LLDYSDTIGFIFHEDAKHDNRSKNRYT 223 (224)
Q Consensus 197 ~L~~~~~i~f~~H~~s~~~~~~~~~~~ 223 (224)
|++...|.|++|.++..|+..+++|.
T Consensus 195 -LGl~~~I~YK~D~~T~~Giy~~n~~~ 220 (251)
T 1ztp_A 195 -AGIKCLLTYKPDVYTYLGIYRANRWH 220 (251)
T ss_dssp -TTCCSCEEEEEHHHHHTTCCSSCSSC
T ss_pred -cCCCcceeeccchHhhcCCccCCcce
Confidence 99988899999999887777777664
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=43.16 E-value=11 Score=26.64 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=16.5
Q ss_pred CcCCCCceEEEecCCCccCCCC
Q 027346 99 SKLAVGADFYCFKNKIEPKWED 120 (224)
Q Consensus 99 s~l~~~~~~~lFK~gI~P~WED 120 (224)
-.|..++.+|+||+|---| ||
T Consensus 10 v~LkDGstvyiFKDGKMam-Ed 30 (74)
T 2k0q_A 10 YDLQDGSKVHVFKDGKMGM-EN 30 (74)
T ss_dssp EEBTTSCEEEEETTSCEEE-EC
T ss_pred EecCCCcEEEEEcCCceeh-hh
Confidence 3688999999999996553 44
No 11
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=31.14 E-value=16 Score=20.30 Aligned_cols=12 Identities=50% Similarity=0.902 Sum_probs=9.1
Q ss_pred CCCccCCCCCCC
Q 027346 112 NKIEPKWEDPVC 123 (224)
Q Consensus 112 ~gI~P~WEDp~N 123 (224)
+..+|.|||.+.
T Consensus 13 dkyepfwedee~ 24 (26)
T 1nrp_R 13 DKYEPFWEDEEX 24 (26)
T ss_pred cccCcccccccc
Confidence 457899999753
No 12
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=26.57 E-value=19 Score=20.10 Aligned_cols=11 Identities=55% Similarity=0.990 Sum_probs=8.6
Q ss_pred CCCccCCCCCC
Q 027346 112 NKIEPKWEDPV 122 (224)
Q Consensus 112 ~gI~P~WEDp~ 122 (224)
+..+|.|||.+
T Consensus 13 dkyepfwedee 23 (27)
T 1nro_R 13 DKYEPFWEDEE 23 (27)
T ss_pred cccCccccchh
Confidence 45789999974
Done!