Query 027347
Match_columns 224
No_of_seqs 143 out of 1323
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 6.1E-29 1.3E-33 226.4 17.0 139 80-221 13-151 (319)
2 PF13593 DUF4137: SBF-like CPA 100.0 1.9E-28 4.1E-33 222.8 17.3 142 80-221 1-147 (313)
3 TIGR00832 acr3 arsenical-resis 99.9 2.9E-26 6.2E-31 209.7 17.4 142 79-221 9-157 (328)
4 PF01758 SBF: Sodium Bile acid 99.9 5.6E-22 1.2E-26 167.1 13.1 111 111-222 2-113 (187)
5 KOG4821 Predicted Na+-dependen 99.8 2.8E-21 6E-26 168.1 7.2 158 64-221 7-172 (287)
6 TIGR00841 bass bile acid trans 99.8 6.8E-19 1.5E-23 157.9 13.8 110 112-222 13-122 (286)
7 COG0798 ACR3 Arsenite efflux p 99.7 3E-16 6.6E-21 143.8 17.5 142 80-222 18-166 (342)
8 KOG2718 Na+-bile acid cotransp 99.3 1.1E-11 2.4E-16 115.7 8.3 139 81-220 87-226 (371)
9 TIGR00946 2a69 he Auxin Efflux 99.0 8.2E-09 1.8E-13 93.4 15.3 143 72-219 175-319 (321)
10 PRK09903 putative transporter 98.9 2.2E-08 4.8E-13 90.6 14.4 144 70-219 164-309 (314)
11 PF03547 Mem_trans: Membrane t 98.7 3.1E-07 6.8E-12 84.1 12.4 143 72-217 237-385 (385)
12 COG0679 Predicted permeases [G 98.6 1.3E-06 2.8E-11 79.5 15.3 146 69-220 158-307 (311)
13 TIGR03082 Gneg_AbrB_dup membra 97.0 0.11 2.4E-06 42.9 16.4 134 80-219 22-155 (156)
14 PF05145 AmoA: Putative ammoni 96.8 0.083 1.8E-06 48.6 15.8 135 81-221 1-135 (318)
15 PF05145 AmoA: Putative ammoni 95.5 1.3 2.8E-05 40.7 16.8 103 116-222 213-315 (318)
16 PF04172 LrgB: LrgB-like famil 95.2 0.33 7.2E-06 42.7 11.3 90 126-220 67-158 (215)
17 TIGR00659 conserved hypothetic 95.1 0.37 8E-06 42.8 11.3 90 126-220 77-168 (226)
18 COG3180 AbrB Putative ammonia 95.0 1.8 3.9E-05 40.8 16.0 104 114-221 65-168 (352)
19 PRK10711 hypothetical protein; 94.7 0.67 1.4E-05 41.3 11.8 89 127-220 79-169 (231)
20 PRK04288 antiholin-like protei 94.6 0.69 1.5E-05 41.2 11.7 89 127-220 84-174 (232)
21 PF03601 Cons_hypoth698: Conse 94.5 0.35 7.6E-06 44.5 9.9 136 81-220 28-169 (305)
22 TIGR00932 2a37 transporter, mo 94.2 2.6 5.6E-05 37.0 14.5 59 73-134 10-72 (273)
23 PRK12460 2-keto-3-deoxyglucona 93.9 1.2 2.7E-05 41.3 12.3 132 84-220 167-303 (312)
24 COG2855 Predicted membrane pro 92.5 3 6.4E-05 39.2 12.6 134 82-220 40-178 (334)
25 COG1346 LrgB Putative effector 92.2 2.9 6.2E-05 37.3 11.5 90 126-220 80-171 (230)
26 PF03616 Glt_symporter: Sodium 92.2 3.3 7.2E-05 38.9 12.7 143 68-212 20-174 (368)
27 TIGR00210 gltS sodium--glutama 91.9 4.2 9.2E-05 38.8 13.2 141 68-214 20-176 (398)
28 PRK10669 putative cation:proto 91.2 5.3 0.00011 39.1 13.4 62 108-172 60-123 (558)
29 PRK03659 glutathione-regulated 90.5 6.4 0.00014 39.2 13.4 64 108-174 59-124 (601)
30 PRK03562 glutathione-regulated 90.5 7.1 0.00015 39.1 13.8 67 108-177 59-127 (621)
31 PF03812 KdgT: 2-keto-3-deoxyg 90.4 3.3 7.2E-05 38.5 10.5 130 80-214 13-155 (314)
32 TIGR00698 conserved hypothetic 90.3 6.2 0.00014 36.9 12.4 99 118-220 73-175 (335)
33 TIGR00844 c_cpa1 na(+)/h(+) an 89.8 4.5 9.7E-05 42.1 11.9 69 108-181 74-144 (810)
34 KOG2718 Na+-bile acid cotransp 88.9 0.12 2.7E-06 48.8 0.1 99 115-214 52-151 (371)
35 PRK03659 glutathione-regulated 88.7 20 0.00043 35.7 15.3 102 112-220 270-376 (601)
36 PRK03562 glutathione-regulated 86.3 32 0.00069 34.5 15.2 101 113-220 274-379 (621)
37 PRK05326 potassium/proton anti 84.7 22 0.00048 34.9 13.1 27 108-134 62-88 (562)
38 TIGR03802 Asp_Ala_antiprt aspa 84.5 23 0.0005 35.2 13.2 102 113-218 452-560 (562)
39 COG0475 KefB Kef-type K+ trans 83.0 30 0.00065 32.7 12.8 29 108-136 61-89 (397)
40 PLN03159 cation/H(+) antiporte 82.1 26 0.00056 36.6 12.8 25 108-132 107-131 (832)
41 PLN03159 cation/H(+) antiporte 78.0 37 0.00081 35.4 12.5 104 113-220 328-436 (832)
42 TIGR00698 conserved hypothetic 77.3 11 0.00023 35.4 7.6 77 80-159 252-329 (335)
43 COG0475 KefB Kef-type K+ trans 75.6 74 0.0016 30.1 13.5 103 112-219 278-386 (397)
44 PF03956 DUF340: Membrane prot 75.5 52 0.0011 28.3 13.2 127 84-218 3-136 (191)
45 COG0786 GltS Na+/glutamate sym 74.9 50 0.0011 31.9 11.5 142 68-212 22-175 (404)
46 TIGR00831 a_cpa1 Na+/H+ antipo 74.9 70 0.0015 31.4 12.9 53 80-133 23-76 (525)
47 COG3180 AbrB Putative ammonia 74.8 79 0.0017 30.0 16.3 102 116-222 246-348 (352)
48 PF03977 OAD_beta: Na+-transpo 70.4 50 0.0011 31.3 10.1 59 114-177 73-131 (360)
49 PF05982 DUF897: Domain of unk 65.7 1.2E+02 0.0026 28.5 12.2 33 67-100 165-197 (327)
50 PRK04949 putative sulfate tran 62.9 67 0.0015 28.7 9.2 57 88-144 149-211 (251)
51 PRK05274 2-keto-3-deoxyglucona 62.8 38 0.00083 31.6 7.9 128 84-219 178-310 (326)
52 PF00999 Na_H_Exchanger: Sodiu 61.9 0.54 1.2E-05 42.9 -4.5 132 80-216 21-163 (380)
53 PF04284 DUF441: Protein of un 61.3 61 0.0013 26.9 8.0 49 123-173 65-113 (140)
54 PRK04972 putative transporter; 60.4 1.7E+02 0.0036 29.2 12.3 102 113-218 447-555 (558)
55 TIGR03136 malonate_biotin Na+- 59.0 95 0.0021 29.9 9.8 90 114-222 109-199 (399)
56 TIGR00840 b_cpa1 sodium/hydrog 58.8 1E+02 0.0023 30.7 10.6 99 83-181 39-149 (559)
57 PRK10669 putative cation:proto 56.3 2E+02 0.0044 28.1 14.7 100 113-219 282-386 (558)
58 TIGR00844 c_cpa1 na(+)/h(+) an 55.3 83 0.0018 33.1 9.5 80 111-191 299-381 (810)
59 PRK03818 putative transporter; 52.5 2.5E+02 0.0054 27.9 13.7 103 113-219 437-548 (552)
60 PF03812 KdgT: 2-keto-3-deoxyg 52.4 60 0.0013 30.3 7.2 105 109-221 199-310 (314)
61 TIGR03802 Asp_Ala_antiprt aspa 51.9 1.2E+02 0.0027 30.1 9.8 63 113-177 62-128 (562)
62 PRK14853 nhaA pH-dependent sod 50.9 1.2E+02 0.0026 29.5 9.2 102 109-213 67-174 (423)
63 PF03601 Cons_hypoth698: Conse 49.8 16 0.00035 33.6 3.1 53 80-132 244-297 (305)
64 PRK14856 nhaA pH-dependent sod 49.6 60 0.0013 31.7 7.0 100 109-213 73-179 (438)
65 COG3263 NhaP-type Na+/H+ and K 48.1 3E+02 0.0065 27.6 11.5 76 108-190 63-140 (574)
66 PRK12460 2-keto-3-deoxyglucona 48.1 81 0.0018 29.5 7.4 82 80-165 13-100 (312)
67 TIGR00793 kdgT 2-keto-3-deoxyg 47.7 34 0.00074 31.9 4.8 82 81-165 14-100 (314)
68 PF03547 Mem_trans: Membrane t 43.7 2.5E+02 0.0055 25.5 10.0 79 116-198 46-124 (385)
69 COG4651 RosB Kef-type K+ trans 42.9 28 0.00061 32.9 3.5 50 109-161 61-110 (408)
70 PF09835 DUF2062: Uncharacteri 42.9 1E+02 0.0022 24.8 6.5 41 167-208 26-69 (154)
71 PRK05326 potassium/proton anti 40.7 2E+02 0.0044 28.2 9.3 102 111-219 278-389 (562)
72 KOG2722 Predicted membrane pro 39.5 36 0.00078 32.7 3.7 111 111-223 289-406 (408)
73 TIGR00793 kdgT 2-keto-3-deoxyg 38.8 2.2E+02 0.0047 26.7 8.6 107 109-220 199-309 (314)
74 TIGR01109 Na_pump_decarbB sodi 38.2 1.2E+02 0.0025 28.9 6.8 97 114-223 67-163 (354)
75 PRK15477 oxaloacetate decarbox 37.0 1.4E+02 0.0031 28.9 7.3 37 113-152 137-173 (433)
76 PRK15476 oxaloacetate decarbox 36.9 1.4E+02 0.0031 28.9 7.3 37 113-152 137-173 (433)
77 PRK03818 putative transporter; 36.7 3.3E+02 0.0071 27.1 10.1 59 113-173 65-127 (552)
78 PRK15475 oxaloacetate decarbox 36.2 1.5E+02 0.0033 28.7 7.3 37 113-152 137-173 (433)
79 PF05684 DUF819: Protein of un 35.8 3.9E+02 0.0084 25.3 15.5 140 68-212 227-367 (378)
80 COG2981 CysZ Uncharacterized p 35.8 3E+02 0.0065 25.0 8.7 54 86-140 146-205 (250)
81 PF00999 Na_H_Exchanger: Sodiu 35.7 18 0.0004 32.8 1.2 52 110-161 266-317 (380)
82 TIGR00841 bass bile acid trans 32.8 3.6E+02 0.0079 24.1 10.6 73 148-220 206-279 (286)
83 PRK15060 L-dehydroascorbate tr 29.1 4.4E+02 0.0096 25.5 9.4 20 117-137 253-272 (425)
84 PF03390 2HCT: 2-hydroxycarbox 29.0 1.7E+02 0.0036 28.5 6.4 55 109-165 306-361 (414)
85 TIGR00783 ccs citrate carrier 25.2 1.8E+02 0.0039 27.6 5.8 51 113-165 243-294 (347)
86 COG2855 Predicted membrane pro 20.7 3E+02 0.0064 26.0 6.2 36 108-145 283-318 (334)
87 smart00831 Cation_ATPase_N Cat 20.5 2.3E+02 0.0049 19.0 4.2 28 66-94 33-60 (64)
88 TIGR02908 CoxD_Bacillus cytoch 20.3 3.3E+02 0.0071 21.7 5.6 43 133-176 22-64 (110)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=99.96 E-value=6.1e-29 Score=226.38 Aligned_cols=139 Identities=24% Similarity=0.292 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~ 159 (224)
..+++++++...++...|+...+.+. ..++.++++||.+|++++.||+++.++|||.|+++++.||++||++++++++
T Consensus 13 ~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~ 90 (319)
T COG0385 13 KIFLLWVVLLAAIAPIFPETFGWLGS--AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAK 90 (319)
T ss_pred HHHHHHHHHHHHHHHhccccchhhhH--HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766544333 5688999999999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 160 l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~ 221 (224)
++.+||++++|+++++|||+|++||+ ||++||||+++|+++|.+||++++++||+++..+.
T Consensus 91 ~~~l~~~l~~Gl~ll~~~Pggv~S~~-~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 91 LFPLPPELAVGLLLLGCCPGGVASNA-MTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HcCCCHHHHHhHHheeeCCCchhHHH-HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999977 99999999999999999999999999999998753
No 2
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=99.96 E-value=1.9e-28 Score=222.75 Aligned_cols=142 Identities=32% Similarity=0.541 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccc---hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQ---LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~---~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~ 156 (224)
|||+++++.++++|+.+|..|...+... ..++.++++||++|+++++||++++++|||.|++++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999987655442 5667899999999999999999999999999999999999999999999
Q ss_pred HHHhh--cCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 157 ILQVQ--LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 157 l~~l~--~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~ 221 (224)
+.++. ..+++++.|+++++|+|||++|+|+||++||||+++|+++++++|++|++++|+++..++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 99886 578899999999999999999999999999999999999999999999999999999886
No 3
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=99.94 E-value=2.9e-26 Score=209.66 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=125.6
Q ss_pred HhHHHHHHHHHHHHHHHhCCccccccccc----hhh--HHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 027347 79 DNFLPLALIGGVAFGFANPSLGCLADKYQ----LSK--FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY 152 (224)
Q Consensus 79 ~~~~~l~ii~~vllg~~~P~~g~~~~~~~----~~~--~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pl 152 (224)
..|+.+++++++++|+..|..+.+.+... ..+ +.++++||.+|+++++||+++++||||.++.+++.||+++|+
T Consensus 9 ~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl 88 (328)
T TIGR00832 9 TLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF 88 (328)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 46777888889999999998876554321 112 235568999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-cCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 153 FSKLILQVQ-LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 153 la~~l~~l~-~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~ 221 (224)
++|++++++ .+++++++|+++++|||||++||+ ||++||||+++|+++|++|++++++++|+++..+.
T Consensus 89 la~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v-~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~ 157 (328)
T TIGR00832 89 LMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFV-WNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLL 157 (328)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999975 889999999999999999998888 99999999999999999999999999999987765
No 4
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.88 E-value=5.6e-22 Score=167.13 Aligned_cols=111 Identities=24% Similarity=0.339 Sum_probs=97.5
Q ss_pred HHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHHHHH
Q 027347 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTH 189 (224)
Q Consensus 111 ~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~ 189 (224)
..++++||.+|+++++||+++..||||..+.+++.||+++|+++|+++ .++.++++++.|+++++||||+..|++ ||+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~-~t~ 80 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNV-FTY 80 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHH-HHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHH-HHH
Confidence 568899999999999999999999999999999999999999999999 678899999999999999999999999 999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347 190 LAGGNSALALAMTIISNLLGIMIVSYLFKNDVM 222 (224)
Q Consensus 190 lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~~ 222 (224)
++|||+++|+.+|.++++++++++|+++..+..
T Consensus 81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988754
No 5
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=99.84 E-value=2.8e-21 Score=168.14 Aligned_cols=158 Identities=29% Similarity=0.405 Sum_probs=136.5
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcc----ccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhH
Q 027347 64 SKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLG----CLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVG 139 (224)
Q Consensus 64 ~~~~~~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~g----~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~ 139 (224)
..+.-|.+|+.++.+++||...+.+++..+.+.|+.| .++++++++++.++.||+.+|++++.|++.++.++||.|
T Consensus 7 ~~r~i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~Lh 86 (287)
T KOG4821|consen 7 LIRKIWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLH 86 (287)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchH
Confidence 4456799999999999999999999999999999774 467888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc---CCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHH
Q 027347 140 IFGLFSILLFTPYFSKLILQVQL---QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA-MTIISNLLGIMIVSY 215 (224)
Q Consensus 140 l~~l~~~fvl~Plla~~l~~l~~---~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~-lt~ls~Ll~~~itPl 215 (224)
+++++..+.++|-..|++..... .++++..|+.+++|||++++|+|++|+.+|||++.+.. ....+++.+.+++|-
T Consensus 87 LFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~ 166 (287)
T KOG4821|consen 87 LFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPA 166 (287)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999887643 44589999999999999999999999999999855543 344566667777776
Q ss_pred HHHHhh
Q 027347 216 LFKNDV 221 (224)
Q Consensus 216 l~~~~~ 221 (224)
+....+
T Consensus 167 l~q~LL 172 (287)
T KOG4821|consen 167 LVQMLL 172 (287)
T ss_pred HHHHHH
Confidence 665443
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.80 E-value=6.8e-19 Score=157.92 Aligned_cols=110 Identities=26% Similarity=0.317 Sum_probs=106.0
Q ss_pred HHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhc
Q 027347 112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA 191 (224)
Q Consensus 112 ~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lA 191 (224)
.++++||.+|++++.+|+++..+|||.+..+++.|++++|+++|++++++.++++++.|+++++||||+..|++ ||+++
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v-~t~~~ 91 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNV-FTYLL 91 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHH-HHHHh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347 192 GGNSALALAMTIISNLLGIMIVSYLFKNDVM 222 (224)
Q Consensus 192 gGNvalAl~lt~ls~Ll~~~itPll~~~~~~ 222 (224)
|||.++++.++++||+++++++|+++..+..
T Consensus 92 ~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 92 KGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred CCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764
No 7
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3e-16 Score=143.84 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccc---h-hhHHH--HHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQ---L-SKFST--FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF 153 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~---~-~~~~i--alIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pll 153 (224)
-|..+++.+|+.+|..+|+..+..+..+ + .+.++ .+||.=+-++++.||++++.+++|..++.++.|+++.|++
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~l 97 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLL 97 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4566899999999999998665555332 1 23333 4455556799999999999999999999999999999999
Q ss_pred HHHHHHhh-cCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347 154 SKLILQVQ-LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVM 222 (224)
Q Consensus 154 a~~l~~l~-~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~~ 222 (224)
.|++++++ .+.|++.+|+++++..||+ ++.++|++++|||-.+++..++++.++++++.|.+...|+.
T Consensus 98 m~~la~~fl~~~pey~~GlILlglApC~-aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~ 166 (342)
T COG0798 98 MFALAWFFLPDEPEYRAGLILLGLAPCI-AMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLG 166 (342)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhhH-HHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999985 5667999999999999999 68888999999999999999999999999999999988875
No 8
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.1e-11 Score=115.70 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHhC-CccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 027347 81 FLPLALIGGVAFGFANP-SLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159 (224)
Q Consensus 81 ~~~l~ii~~vllg~~~P-~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~ 159 (224)
.+++.....-.+....| ....+... .+.+......|+..|++++.+++++..+||....+|++.||+++|+.+|.+++
T Consensus 87 ~lp~~~~~~~v~~~~~~~~~~t~l~~-~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~ 165 (371)
T KOG2718|consen 87 ILPLLVFLLKVLFLLDPLLAFTWLVT-GCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSK 165 (371)
T ss_pred chhHHHHHHHHHhhcCCcccceEEEe-CccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhh
Confidence 44555555555555555 22211111 13446678899999999999999999999999999999999999999999998
Q ss_pred hhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 160 l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
.+..|...+.|++++.|++++..++.+++..-+||+++++.+|.+||+.+++++|++-..+
T Consensus 166 ~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l 226 (371)
T KOG2718|consen 166 VLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILL 226 (371)
T ss_pred HhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888867888777777777788845555599999999999999999999999987654
No 9
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.03 E-value=8.2e-09 Score=93.36 Aligned_cols=143 Identities=17% Similarity=0.106 Sum_probs=114.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHh-CCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHH
Q 027347 72 PLLKIAADNFLPLALIGGVAFGFAN-PSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF 149 (224)
Q Consensus 72 ~l~~fl~~~~~~l~ii~~vllg~~~-P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl 149 (224)
.+.+.+++..+ ++.++|+++...- +-++...+..+ +......+.++..|++++.++.+ +++|......+..+++
T Consensus 175 ~~~~~~~nP~i-ia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil 250 (321)
T TIGR00946 175 VWKKLIKFPPL-WAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLV 250 (321)
T ss_pred HHHHHHhCCCh-HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHH
Confidence 44555554444 8888888877653 21222233333 56667888999999999877764 3567888889999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347 150 TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKN 219 (224)
Q Consensus 150 ~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~ 219 (224)
.|++++++..++..+++...-.++.+++|++..+.+ +++..|+|...+.....+||+++.+++|+++..
T Consensus 251 ~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 251 QPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAV-LATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888889999999999987666 999999999999999999999999999999875
No 10
>PRK09903 putative transporter YfdV; Provisional
Probab=98.94 E-value=2.2e-08 Score=90.63 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-hCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHH
Q 027347 70 AKPLLKIAADNFLPLALIGGVAFGFA-NPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSIL 147 (224)
Q Consensus 70 ~~~l~~fl~~~~~~l~ii~~vllg~~-~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~f 147 (224)
.+.+++.+++..+ ++.++|+++... .+-++...+..+ +......+.++..|.++...+++ ..+....+.+..+
T Consensus 164 ~~~l~~~~~nP~i-ia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~----~~~~~~~~~~~Kl 238 (314)
T PRK09903 164 LSALISAAKEPVV-WAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE----FSAEIAYNTFLKL 238 (314)
T ss_pred HHHHHHHHhchHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccHHHHHHHHHHH
Confidence 3566677655555 888888776654 122222222222 45566788889999988776553 2244567778899
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347 148 LFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKN 219 (224)
Q Consensus 148 vl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~ 219 (224)
++.|++.+++......+++...-.++.+++|++..+.+ +....|||..++.....+||+++.+++|+++..
T Consensus 239 i~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 239 ILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII-IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777788888888999999999987666 999999999999999999999999999999875
No 11
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.66 E-value=3.1e-07 Score=84.10 Aligned_cols=143 Identities=24% Similarity=0.312 Sum_probs=109.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCCcc----cc-ccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHH
Q 027347 72 PLLKIAADNFLPLALIGGVAFGFANPSLG----CL-ADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFS 145 (224)
Q Consensus 72 ~l~~fl~~~~~~l~ii~~vllg~~~P~~g----~~-~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~ 145 (224)
.+.+.+++.-+ ++.++|++++..-+... .. .+..+ +....+.+.+|..|..+..+..+. ..+++......+.
T Consensus 237 ~~~~~~~nP~~-~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~-~~~~~~~~~~~~~ 314 (385)
T PF03547_consen 237 SILKLFKNPPL-IAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKS-ALGWKPSIIAVLV 314 (385)
T ss_pred HHHHHHhCcHH-HHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCccc-chhhHHHHHHHHH
Confidence 33444544444 88888998888754432 11 11111 445567889999998887654432 2345555667899
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027347 146 ILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLF 217 (224)
Q Consensus 146 ~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~ 217 (224)
-++++|++++++..++..+++....+++.+|+|+++.+.+ ++...+.|...+-.....+++++++.+|+|+
T Consensus 315 rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~-~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 315 RLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFV-IASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999988888888888999999999987777 9999999999999999999999999999984
No 12
>COG0679 Predicted permeases [General function prediction only]
Probab=98.63 E-value=1.3e-06 Score=79.47 Aligned_cols=146 Identities=24% Similarity=0.315 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH---hCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHH
Q 027347 69 WAKPLLKIAADNFLPLALIGGVAFGFA---NPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLF 144 (224)
Q Consensus 69 ~~~~l~~fl~~~~~~l~ii~~vllg~~---~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~ 144 (224)
+.+.+++-+++..+ ++.++|.++... .|+. ..+..+ .......+.++..|++++.++.++ .+++.......
T Consensus 158 ~~~~~~~~~~nP~i-~a~i~g~~~~~~~i~lP~~--~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~ 232 (311)
T COG0679 158 LLSVLKKLLTNPLI-IALILGLLLNLLGISLPAP--LDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALS 232 (311)
T ss_pred HHHHHHHHHhCcHH-HHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHH
Confidence 33444555555555 888888887753 2321 111111 455667889999999999844443 34566667777
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 145 SILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 145 ~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
..+++.|+++++++++++.++....-+++..++|++...-+ ++...++|..++.....+|++++.+.+|.+....
T Consensus 233 ~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v-~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 233 LKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYV-LARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998888877777888889999986666 9999999999999999999999999999987654
No 13
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.95 E-value=0.11 Score=42.86 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~ 159 (224)
.|+.-.++.+..+......... .+. ......-.++-...|++++.+++++..+.+...+...+...++.=..++.+.+
T Consensus 22 ~~llG~mi~~~~~~~~~~~~~~-~P~-~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~ 99 (156)
T TIGR03082 22 AWLLGPLLAGAVLSLAGGLEIT-LPP-WLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLAR 99 (156)
T ss_pred HHHHHHHHHHHHHHhcCCccCC-CCH-HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555543211110 111 12333444455678999999999999888888877777777776677888888
Q ss_pred hhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347 160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKN 219 (224)
Q Consensus 160 l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~ 219 (224)
....|..-+ +++++|+|.+--.+...-.|+|.+.-...=.+=-++-.+..|++..+
T Consensus 100 ~~~~~~~ta----~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 100 LTGVDPLTA----FLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HHCCCHHHH----HHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 776665332 58899999876665667778999887777777777777888887654
No 14
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.78 E-value=0.083 Score=48.62 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 027347 81 FLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQV 160 (224)
Q Consensus 81 ~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l 160 (224)
|+.-.++...+.+...+..-..-++ .......++=...|.+++++.+.+....+...++..+...+..-..+|.+.+.
T Consensus 1 WllG~~ia~~~~~~~~~~~~~~p~~--~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ 78 (318)
T PF05145_consen 1 WLLGPMIAVIIAALFGPLPLRVPRR--LRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRI 78 (318)
T ss_pred CchHHHHHHHHHHHhCCCccCCCHH--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666664333221111 34455555666789999999999999999999988888888888889999888
Q ss_pred hcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 161 QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 161 ~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~ 221 (224)
...|..- .+.+++|++.+.-+++..-.|+|...-...=.+=-++-++.+|+......
T Consensus 79 ~~~d~~T----A~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~ 135 (318)
T PF05145_consen 79 SGLDRAT----AFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLG 135 (318)
T ss_pred cCCChhH----HHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7666543 36899999998888899999999998888888888888899999887654
No 15
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.52 E-value=1.3 Score=40.74 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=80.7
Q ss_pred HHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCH
Q 027347 116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNS 195 (224)
Q Consensus 116 Iff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNv 195 (224)
+=...|++++.+++++..|.....+...+...+..=+.++.+.++...|. .-.++++.|+|++.-.....-.|.|+
T Consensus 213 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~~l~~d~ 288 (318)
T PF05145_consen 213 IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIALALGADV 288 (318)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHHHcCCCh
Confidence 33467899999999998777777777766666777777888888776664 34578999999876665667778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347 196 ALALAMTIISNLLGIMIVSYLFKNDVM 222 (224)
Q Consensus 196 alAl~lt~ls~Ll~~~itPll~~~~~~ 222 (224)
+.-...=.+=.+.-.++.|++.+.+..
T Consensus 289 ~~V~~~q~~Rl~~v~~~~p~~~r~~~r 315 (318)
T PF05145_consen 289 AFVAAHQVVRLLFVLLLAPFIARWLRR 315 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888999999887643
No 16
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.22 E-value=0.33 Score=42.68 Aligned_cols=90 Identities=19% Similarity=0.310 Sum_probs=72.3
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHH
Q 027347 126 SGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTI 203 (224)
Q Consensus 126 ~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~ 203 (224)
.|+.....+|++.++.++...-++.-+..+.++++++.+++....++ |-.++..++ .+..-|||.+++...+.
T Consensus 67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSVTtpiAi~is~~iGG~~sLta~~Vv 141 (215)
T PF04172_consen 67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLA-----PKSVTTPIAIEISEQIGGIPSLTAVFVV 141 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH-----HHHhhHHHHHHHHHHhCChHHHHHHHHH
Confidence 45666667789999999888877777888888999999988776654 433333333 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027347 204 ISNLLGIMIVSYLFKND 220 (224)
Q Consensus 204 ls~Ll~~~itPll~~~~ 220 (224)
++-++|.++-|.+++.+
T Consensus 142 itGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 142 ITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHhhHHHHhHHHHHhHc
Confidence 99999999999998764
No 17
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=95.10 E-value=0.37 Score=42.78 Aligned_cols=90 Identities=16% Similarity=0.280 Sum_probs=69.9
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHH
Q 027347 126 SGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTI 203 (224)
Q Consensus 126 ~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~ 203 (224)
.|+.+..-+|++.++.++..--++--..++.++++++.+++....+ .|-.++..++ .+..-|||.+++...+.
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl-----~pkSvTtpiAm~vs~~iGG~~sLta~~vv 151 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASL-----LPKSVTTPIAMHVSEMIGGIPAVTAVFVI 151 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHh-----hhHHhhHHHHHHHHHHhCChHHHHHHHHH
Confidence 4555555668888888887766666677888999998988877644 3444444333 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027347 204 ISNLLGIMIVSYLFKND 220 (224)
Q Consensus 204 ls~Ll~~~itPll~~~~ 220 (224)
++-++|..+-|.+++.+
T Consensus 152 itGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 152 LTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999988764
No 18
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=94.97 E-value=1.8 Score=40.83 Aligned_cols=104 Identities=17% Similarity=0.272 Sum_probs=85.7
Q ss_pred HHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCC
Q 027347 114 FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG 193 (224)
Q Consensus 114 alIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgG 193 (224)
.++=...|.+++.+++....++|-..++..+......=+.+|.+.+....|.+-+ +.+++|++.+.=+++.+-.|-
T Consensus 65 ~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gA 140 (352)
T COG3180 65 VILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGA 140 (352)
T ss_pred HHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCC
Confidence 3344567899999999999999999999999999888899999988765554433 579999998777778888899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 194 NSALALAMTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 194 NvalAl~lt~ls~Ll~~~itPll~~~~~ 221 (224)
|.+.-..+-.+=-+.-++..|+..+.+.
T Consensus 141 d~~~VAl~Q~lRvl~Vvl~vplv~~~~~ 168 (352)
T COG3180 141 DLRLVALMQYLRVLFVVLLAPLVSRLFV 168 (352)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999888888878888888888877654
No 19
>PRK10711 hypothetical protein; Provisional
Probab=94.68 E-value=0.67 Score=41.29 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=71.2
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHHH
Q 027347 127 GEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTII 204 (224)
Q Consensus 127 ~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~l 204 (224)
|+....-++++.++.+...--++--+.++.++++++.++++...+ .|-.++..++ .++.-||+.+++...+.+
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl-----~pkSVTtPIAm~is~~iGG~~sLta~~Vii 153 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASI-----LPKSVTTPIAMAVGGSIGGIPAISAVCVIF 153 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhhhhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 555555568899999888777777788899999999998877655 4544444443 489999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027347 205 SNLLGIMIVSYLFKND 220 (224)
Q Consensus 205 s~Ll~~~itPll~~~~ 220 (224)
+-++|.++-|.+++.+
T Consensus 154 tGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 154 VGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998764
No 20
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=94.61 E-value=0.69 Score=41.25 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=71.3
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHHH
Q 027347 127 GEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTII 204 (224)
Q Consensus 127 ~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~l 204 (224)
|++...-++|+.++.+++.--++.-+.++.++++++.++++...+ .|-.++..++ .++.-||+.+++...+.+
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~psLtA~~Vii 158 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKEITSFAVIF 158 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 555555568999999988877777788899999999998766554 4544444443 489999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027347 205 SNLLGIMIVSYLFKND 220 (224)
Q Consensus 205 s~Ll~~~itPll~~~~ 220 (224)
+-++|.++-|.+++.+
T Consensus 159 tGi~Gai~g~~llk~~ 174 (232)
T PRK04288 159 NAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998764
No 21
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.47 E-value=0.35 Score=44.46 Aligned_cols=136 Identities=14% Similarity=0.067 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHH-HhCCccccccccch-hhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 027347 81 FLPLALIGGVAFGF-ANPSLGCLADKYQL-SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL 158 (224)
Q Consensus 81 ~~~l~ii~~vllg~-~~P~~g~~~~~~~~-~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~ 158 (224)
...+++++|++++- .......+.+-... ....+=.=-.++|.++++.|+.+.- ++..+...+.. ..+=++++.++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G--~~~~~~~~~~v-~~~~~~~~~lg 104 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG--WKGLLIIIIVV-ILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC--ccHHHHHHHHH-HHHHHHHHHHH
Confidence 34478888888884 43332222221111 2222222223579999999998853 33444333332 33335566677
Q ss_pred -HhhcCCHHHHHHHHhHhcccchhhHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 159 -QVQLQPQEFVTGLALFSCMPTTLSSGVALT---HLAGGNSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 159 -~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T---~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
+.+..|+++. -++=.+..=||.+..++.. +--+-|++.++..+.+=+.+++++.|.+-...
T Consensus 105 ~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 105 RRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 8888887633 3344455556643333322 33355899999999999999999999987754
No 22
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=94.17 E-value=2.6 Score=37.02 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCccc-ccc--ccc-hhhHHHHHHHHHhccccCHHHHHHHHh
Q 027347 73 LLKIAADNFLPLALIGGVAFGFANPSLGC-LAD--KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAE 134 (224)
Q Consensus 73 l~~fl~~~~~~l~ii~~vllg~~~P~~g~-~~~--~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~ 134 (224)
+.+.++-.....-++.|+++| |.... ..+ ... +..+.+..++|..|++++.+++++..+
T Consensus 10 l~~~l~lP~~v~~il~GillG---p~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~ 72 (273)
T TIGR00932 10 LSRRLGIPSVLGYLLAGVLIG---PSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRK 72 (273)
T ss_pred HHHHhCCCHHHHHHHHHHHhC---cccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344444555666677777777 32211 111 111 455677889999999999999988643
No 23
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=93.91 E-value=1.2 Score=41.28 Aligned_cols=132 Identities=13% Similarity=0.009 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCCccc-cccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 84 LALIGGVAFGFANPSLGC-LADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ 161 (224)
Q Consensus 84 l~ii~~vllg~~~P~~g~-~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~ 161 (224)
+.+++.+++|+++-+... ..+.+. -.++.+.+.-|.+|.+++++|+.++ -++.++++++.. +++=++.+.+.+++
T Consensus 167 v~lilpILiGmilGNld~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~--G~~GIlL~v~vv-~~t~~~~~~i~rll 243 (312)
T PRK12460 167 VAALLPLVLGMILGNLDPDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQA--GLAGILLGVLVT-IVTGFFNIFADRLV 243 (312)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHh--ChHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 445555666665533211 112221 2233455556789999999999874 244555554433 33446677777877
Q ss_pred cCCHHHHHHHHhH---hcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 162 LQPQEFVTGLALF---SCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 162 ~~~~~l~~Glll~---~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
..++.. |+.+- ++.=||-+.-.+..-..+..++.|....+.+.+...+++|++..++
T Consensus 244 g~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 244 GGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred CCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 33333 2222222222223344566788888888888888888888888775
No 24
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.54 E-value=3 Score=39.15 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 027347 82 LPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQV 160 (224)
Q Consensus 82 ~~l~ii~~vllg~~~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l 160 (224)
+.+++++|++++.+........+-.+ ..+..+=+=-.++|.+++..|+.+.--+ .+. .-.......=++++.++++
T Consensus 40 l~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~--~v~-~~~~~l~~t~~~~~~lg~~ 116 (334)
T COG2855 40 LTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGS--GVL-IIAITLSSTFLFAYFLGKL 116 (334)
T ss_pred HHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCcc--HHH-HHHHHHHHHHHHHHHHHHH
Confidence 44777777777744322212222111 1233332222357999999999885322 221 1222223333668888888
Q ss_pred hcCCHHHHHHHHhHhcccchhhHHHHHHH-hc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 161 QLQPQEFVTGLALFSCMPTTLSSGVALTH-LA---GGNSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 161 ~~~~~~l~~Glll~~~~Pttv~S~Vv~T~-lA---gGNvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
+++|..++ =++=++|.=||. |.++-+. .. +=|++.|+..+++=+.+++++.|.+-.+.
T Consensus 117 lgld~~~a-~Lia~GssICGa-sAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 117 LGLDKKLA-LLIAAGSSICGA-SAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred hCCCHHHH-HHHHccchhhHH-HHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 88887654 244466777784 5553332 22 34789999999999999999999886653
No 25
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.21 E-value=2.9 Score=37.32 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=73.2
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHH
Q 027347 126 SGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTI 203 (224)
Q Consensus 126 ~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~ 203 (224)
.|++...-|+|+.++.+.+.--++-=..+++++++++.++++.. +.+|-+++..++ .++.-||-.+++...+.
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi 154 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALTAVFVI 154 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHHHHHHH
Confidence 46677777899999998877666655778899999999987654 456766666555 48899999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027347 204 ISNLLGIMIVSYLFKND 220 (224)
Q Consensus 204 ls~Ll~~~itPll~~~~ 220 (224)
++-++|..+-|.+++.+
T Consensus 155 ~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 155 LTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998765
No 26
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.18 E-value=3.3 Score=38.92 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHhCCc---cccccccc--hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHH
Q 027347 68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSL---GCLADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG 142 (224)
Q Consensus 68 ~~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~---g~~~~~~~--~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~ 142 (224)
+|+++-.+++||.++|-.++.|.+.+.+.+.. +...-+++ +....+...|-..|++-+.+++++.-++--..+..
T Consensus 20 ~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~ 99 (368)
T PF03616_consen 20 KFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLI 99 (368)
T ss_pred HHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHH
Confidence 36677788999999999999998876653321 22212222 23333333444788998998888765433322222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhH-hcccchh--hHHHH--HHHh--cCCCHHHHHHHHHHHHHHHHHH
Q 027347 143 LFSILLFTPYFSKLILQVQLQPQEFVTGLALF-SCMPTTL--SSGVA--LTHL--AGGNSALALAMTIISNLLGIMI 212 (224)
Q Consensus 143 l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~-~~~Pttv--~S~Vv--~T~l--AgGNvalAl~lt~ls~Ll~~~i 212 (224)
.....++==+++.++++++..+|. .|++.- ...=+|- +.+.. +... ..|-..+++..++++.+.|.++
T Consensus 100 ~~~~~~~Q~~vG~~la~l~gl~p~--~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~li 174 (368)
T PF03616_consen 100 AIILAFLQNIVGLGLAKLLGLDPL--FGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLI 174 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCch--HHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 111122222456677777777764 354321 1222222 22222 2222 1345577888888888877555
No 27
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=91.91 E-value=4.2 Score=38.81 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH---hCCccccccccc--hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHH-
Q 027347 68 NWAKPLLKIAADNFLPLALIGGVAFGFA---NPSLGCLADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIF- 141 (224)
Q Consensus 68 ~~~~~l~~fl~~~~~~l~ii~~vllg~~---~P~~g~~~~~~~--~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~- 141 (224)
+|+++-.++++|..+|-.++.|.+.+.. .|..+...-+++ +....+...|-..|++-+.+++++.-+.-...+.
T Consensus 20 ~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~ 99 (398)
T TIGR00210 20 RYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLAT 99 (398)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHH
Confidence 4677778899999999999999886432 244432222222 3444444445578888888887764322111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh-HhcccchhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHHH
Q 027347 142 ---GLFSILLFTPYFSKLILQVQLQPQEFVTGLAL-FSCMPTTLSSGVALTHLA------GGNSALALAMTIISNLLGIM 211 (224)
Q Consensus 142 ---~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll-~~~~Pttv~S~Vv~T~lA------gGNvalAl~lt~ls~Ll~~~ 211 (224)
..+.|+ .++.++++++..+|. .|++. -...-+|-..+.+|.... .|...+++..++++.+.|.+
T Consensus 100 ~~~l~~~Qn----~vGv~la~~~gl~P~--~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~l 173 (398)
T TIGR00210 100 AVGFLVIQN----AVGIGMASLLGQAPL--MGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGI 173 (398)
T ss_pred HHHHHHHHH----HHHHHHHHHcCCChH--HHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 112333 446666677777763 35552 344444444444443333 34567777888888887776
Q ss_pred HHH
Q 027347 212 IVS 214 (224)
Q Consensus 212 itP 214 (224)
+==
T Consensus 174 iGg 176 (398)
T TIGR00210 174 IGG 176 (398)
T ss_pred HHH
Confidence 643
No 28
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.20 E-value=5.3 Score=39.09 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHH
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLA 172 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~--~~l~~Gll 172 (224)
+..+.+.+++|..|++++.+++++. ++..+.+...++++.-+++++++..+..+ ..+..|..
T Consensus 60 la~lGli~llF~~Gle~d~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ 123 (558)
T PRK10669 60 LAELGVILLMFGVGLHFSLKDLMAV---KSIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLC 123 (558)
T ss_pred HHHHHHHHHHHHhHhcCCHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4556777889999999999999764 34444455556555555666666555433 23444443
No 29
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.54 E-value=6.4 Score=39.19 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhH
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALF 174 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~ 174 (224)
+..+.+.+++|..|++++++++++. +|..+..-..|.++.-++.++++..++.+. .+.+|+.+.
T Consensus 59 laelGvv~LLF~iGLel~~~~l~~~---~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la 124 (601)
T PRK03659 59 FSELGVVFLMFIIGLELNPSKLWQL---RRSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA 124 (601)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456778899999999999999874 223333333344443334444444443332 355665444
No 30
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.52 E-value=7.1 Score=39.10 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHhHhcc
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLALFSCM 177 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~--~~l~~Glll~~~~ 177 (224)
+..+.+.+++|..|++++++++++. +|..+..-..|.++.-+++++++..++.+ ..+.+|..+..+.
T Consensus 59 laelGvv~LlF~iGLEl~~~~l~~~---~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 59 FAEFGVVLMLFVIGLELDPQRLWKL---RRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3456777788999999999999874 33333333345444444555555555443 3466677665554
No 31
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=90.39 E-value=3.3 Score=38.50 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccc-----hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQ-----LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFS 154 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~-----~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla 154 (224)
-.+.+=++++.++--++|+.....+.++ -....+++.+|++|.+++.|+..+++||--.++ +..+++-=+++
T Consensus 13 G~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll---~~K~~~~~~lg 89 (314)
T PF03812_consen 13 GMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLL---LVKFIIGALLG 89 (314)
T ss_pred ceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHH---HHHHHHHHHHH
Confidence 3455777888888889998865334333 133467888899999999999999988765554 44555555778
Q ss_pred HHHHHhhcCCH---HHHH---HHHhHhcccchhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHH
Q 027347 155 KLILQVQLQPQ---EFVT---GLALFSCMPTTLSSGVALTHLAG--GNSALALAMTIISNLLGIMIVS 214 (224)
Q Consensus 155 ~~l~~l~~~~~---~l~~---Glll~~~~Pttv~S~Vv~T~lAg--GNvalAl~lt~ls~Ll~~~itP 214 (224)
+++.+++..+. .... -+.+++++-.+-. ++ +..+.+ ||..=.-....+|..-+|+++=
T Consensus 90 l~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~Ng-gL-Y~aL~~~yGd~~D~gA~~i~sl~~GPf~tM 155 (314)
T PF03812_consen 90 LLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNG-GL-YLALMGQYGDEEDVGAFSILSLNDGPFFTM 155 (314)
T ss_pred HHHHHHcCccccccccccchHHHHHHHHHhcCCH-HH-HHHHHHHhCCHHHhHHHHHHHhhhhHHHHH
Confidence 88888765542 1122 2345555544432 22 333332 5554444555555556666553
No 32
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=90.32 E-value=6.2 Score=36.87 Aligned_cols=99 Identities=11% Similarity=0.068 Sum_probs=60.3
Q ss_pred HHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHHHHHhc---CC
Q 027347 118 IVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA---GG 193 (224)
Q Consensus 118 f~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lA---gG 193 (224)
.++|.+++++|+.+.- ++.+......... +=++++.++ +.+..|+++. -++=.++.=||.+..++..... +-
T Consensus 73 VLlG~~l~~~~i~~~G--~~~l~~~~~~v~~-~~~~~~~~g~k~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~ 148 (335)
T TIGR00698 73 TLYGFRLTFPYIADVG--PNEIVADTLILTS-TFFLTVFLGSSRLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKE 148 (335)
T ss_pred HHHCccccHHHHHHhh--HHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCcc
Confidence 3579999999997753 3333332222222 223345555 6777776533 2333444555643333333333 44
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 194 NSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 194 NvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
|++.++..+.+-+.+++++.|++-.++
T Consensus 149 ~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 149 KVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred ceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998654
No 33
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=89.82 E-value=4.5 Score=42.12 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHhHhcccchh
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ--LQPQEFVTGLALFSCMPTTL 181 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~--~~~~~l~~Glll~~~~Pttv 181 (224)
++-+.++++.|..|++++.+++++. |+.....++....++=++..+++++. .++ +..++++-+|+-.|.
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~---wrsV~rLl~~~M~lT~livAL~a~~Li~GL~--~~~ALLLGAILAPTD 144 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKH---WVSVTMLLVPVMTSGWLVIALFVWILVPGLN--FPASLLMGACITATD 144 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhhhcCCc
Confidence 3445778899999999999999875 44433333222222222222233322 333 555666666655554
No 34
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=88.95 E-value=0.12 Score=48.82 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=85.9
Q ss_pred HHHHHhccccCHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCC
Q 027347 115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL-FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG 193 (224)
Q Consensus 115 lIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fv-l~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgG 193 (224)
..++..|++++.+++++..++++.....+..++. ++|...+.....+..++....-.+...|+|.+..+|+ +..-.++
T Consensus 52 ~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~-ls~g~~~ 130 (371)
T KOG2718|consen 52 FVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNM-LSFGIKL 130 (371)
T ss_pred HhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHH-HHHhcCc
Confidence 6778889999999999988888877888888999 9999999999888777778888999999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 027347 194 NSALALAMTIISNLLGIMIVS 214 (224)
Q Consensus 194 NvalAl~lt~ls~Ll~~~itP 214 (224)
|.....-++.-.+.+.+-++|
T Consensus 131 ~~~~~~~~~~rP~~~~lG~v~ 151 (371)
T KOG2718|consen 131 DMDLFAGMIKRPTPLALGFVP 151 (371)
T ss_pred cHHHHhhHhhCCcceeehHHH
Confidence 999999988776666655555
No 35
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.73 E-value=20 Score=35.74 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=59.3
Q ss_pred HHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhHhcccchhhHHHHHHH
Q 027347 112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTH 189 (224)
Q Consensus 112 ~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~~~~Pttv~S~Vv~T~ 189 (224)
.+.+-|...|++++++.+.+ +|...+...+..++.-++..++.++.+..+. .+..|+.+ .|.|--+-++.+.
T Consensus 270 ll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L---~~~Gef~~vl~~~ 343 (601)
T PRK03659 270 LLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVL---SQGGEFAFVLFSA 343 (601)
T ss_pred HHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH---hccccHHHHHHHH
Confidence 44445557899999987754 4666666666667778888888887776664 35566553 4445444442221
Q ss_pred h-cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 190 L-AGG--NSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 190 l-AgG--NvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
. ..| +......+ ....+++.+++|++...+
T Consensus 344 a~~~g~i~~~~~~~l-v~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 344 ASSQRLLQGDQMALL-LVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HHhCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 1 122 12222222 344566667788877653
No 36
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.27 E-value=32 Score=34.54 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=59.1
Q ss_pred HHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhHhcccchhhHHHHHHHh
Q 027347 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHL 190 (224)
Q Consensus 113 ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~~~~Pttv~S~Vv~T~l 190 (224)
+.+-|...|+++++..+.+ +|...+...+..++.-++..++.++.+..+. .+..|+.+. +.|--+-++++..
T Consensus 274 l~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~---~~Gef~~vl~~~a 347 (621)
T PRK03562 274 LGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLG---QGGEFAFVVFGAA 347 (621)
T ss_pred HHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHh---ccccHHHHHHHHH
Confidence 3444456899999877754 4555555555667777888888888776653 467776443 3343344423221
Q ss_pred -cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 191 -AGG--NSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 191 -AgG--NvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
..| |......+.. ..+++.+++|++...+
T Consensus 348 ~~~~~i~~~~~~~lv~-~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 348 QMANVLEPEWAKLLTL-AVALSMAATPLLLVLL 379 (621)
T ss_pred HHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 122 2333333332 4577888888877653
No 37
>PRK05326 potassium/proton antiporter; Reviewed
Probab=84.74 E-value=22 Score=34.88 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHh
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAE 134 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~ 134 (224)
+..+.+.+++|..|++++.+++++..+
T Consensus 62 i~~l~L~~iLF~~Gl~~~~~~l~~~~~ 88 (562)
T PRK05326 62 VGNLALAVILFDGGLRTRWSSFRPALG 88 (562)
T ss_pred HHHHHHHHHHHcCccCCCHHHHHHHHH
Confidence 455678889999999999999997543
No 38
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=84.54 E-value=23 Score=35.17 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=57.7
Q ss_pred HHHHHHHhccccCHH-HHHHHHhc--chhHHHHHHHHHHHHH-HHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHHH
Q 027347 113 TFAIFIVSGLTLRSG-EIGAAAEA--WPVGIFGLFSILLFTP-YFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVAL 187 (224)
Q Consensus 113 ialIff~~Gl~L~~~-~l~~~l~~--pr~~l~~l~~~fvl~P-lla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv~ 187 (224)
+++.+|+....++-. ++.+.+++ ++..+++.+. .+.| ++++.++ +++..++....|. +.+++=.+-+-+. .
T Consensus 452 ~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~-~aG~~t~t~~l~~-a 527 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVV--TILPLIITMLIGKYVLKYDPALLLGA-LAGARTATPALGA-V 527 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHH-hhccCCCcHHHHH-H
Confidence 455666554444433 36666666 3444444444 4446 5577777 5788999899898 4455444433333 3
Q ss_pred HHhcCCCH-HHHHHHH-HHHHHHHHHHHHHHHH
Q 027347 188 THLAGGNS-ALALAMT-IISNLLGIMIVSYLFK 218 (224)
Q Consensus 188 T~lAgGNv-alAl~lt-~ls~Ll~~~itPll~~ 218 (224)
+..++-|. +++=..+ .++|++=++..|+++.
T Consensus 528 ~~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv~ 560 (562)
T TIGR03802 528 LERAGSSVPALGYTITYALGNVLLTLLGPLIVA 560 (562)
T ss_pred HHhcCCCCcccchHhHHHHHHHHHHHHHHHHHH
Confidence 45554332 2222222 4678888888887664
No 39
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=83.00 E-value=30 Score=32.72 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHhcc
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~p 136 (224)
.....+...||..|++.+.+++++..++.
T Consensus 61 laelGvi~LlF~~GLE~~~~~l~~~~~~~ 89 (397)
T COG0475 61 LAELGVVFLLFLIGLEFDLERLKKVGRSV 89 (397)
T ss_pred HHHHhHHHHHHHHHHCcCHHHHHHhchhh
Confidence 45667788899999999999999965554
No 40
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=82.06 E-value=26 Score=36.56 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHH
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAA 132 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~ 132 (224)
+..+.+.+.||..|++++.+++++.
T Consensus 107 la~lGlillmFliGLE~Dl~~lr~~ 131 (832)
T PLN03159 107 MANLGLLYFLFLVGVEMDISVIRRT 131 (832)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHhc
Confidence 4455677788999999999999864
No 41
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=78.03 E-value=37 Score=35.40 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhHhcccchhhHHHHHH-H
Q 027347 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALT-H 189 (224)
Q Consensus 113 ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~~~~Pttv~S~Vv~T-~ 189 (224)
+.+-|...|++++.+.+.. ...+...+...+..++.--+.+++.++....+. .+++|+++.. -|...-++.. .
T Consensus 328 lPlFFv~vGl~idl~~l~~-~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~---kG~~~Lii~~ig 403 (832)
T PLN03159 328 LPLFFAISGLKTNVTKIQG-PATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNT---KGLVEMIVLNVG 403 (832)
T ss_pred HHHHHHHhhheeeHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc---ccHHHHHHHHHH
Confidence 3334457899999976642 011112122222223333334444555555553 4666665532 2333333221 2
Q ss_pred hcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 190 LAGGNS--ALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 190 lAgGNv--alAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
...|-. ..-..++....+...+++|++...|
T Consensus 404 ~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 404 RDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred HhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 223322 1111222223345667777766543
No 42
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=77.34 E-value=11 Score=35.38 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL 158 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~ 158 (224)
.||.++.+..+++..+.+-+....+... ...+.+..-|...|++.+++|+++. .+|+.+.+++... ..-..++.+.
T Consensus 252 P~FvlgFl~~~~l~S~~~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~--G~kp~~~g~i~~~-~l~~~~~~l~ 328 (335)
T TIGR00698 252 PWFAVLFIGVAIFNSFDLLPGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKA--GVKPLFASYAGYL-WLVGGGFVLN 328 (335)
T ss_pred ChHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHc--CchHHHHHHHHHH-HHHHHHHHHH
Confidence 5666777777777665322222222222 5667788888999999999999884 6777777766542 2234444444
Q ss_pred H
Q 027347 159 Q 159 (224)
Q Consensus 159 ~ 159 (224)
+
T Consensus 329 ~ 329 (335)
T TIGR00698 329 Y 329 (335)
T ss_pred H
Confidence 3
No 43
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=75.60 E-value=74 Score=30.09 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhc
Q 027347 112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA 191 (224)
Q Consensus 112 ~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lA 191 (224)
.+.+-|...|++++.+.+.+. +...+.......+..=+..+..++..+.+...+.+.-......+.. +-+ ....+
T Consensus 278 fiplFFi~vG~~~dl~~l~~~---~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~-~~v-~~~~~ 352 (397)
T COG0475 278 FIPLFFISVGMSLDLGVLLEN---LLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEF-AFV-LAGIA 352 (397)
T ss_pred HHHHHHHHhhHHcCHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHH-HHH-HHHhc
Confidence 344445578999998888763 3332222222222333445556666665555555555555555554 333 66666
Q ss_pred CC-C---HHHH--HHHHHHHHHHHHHHHHHHHHH
Q 027347 192 GG-N---SALA--LAMTIISNLLGIMIVSYLFKN 219 (224)
Q Consensus 192 gG-N---valA--l~lt~ls~Ll~~~itPll~~~ 219 (224)
.| . ..++ +.++.+.+.+.+..+|.+...
T Consensus 353 ~~~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 353 LGSAISEALLTAVVILSMITTPILPLLTPILLKR 386 (397)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 2 2222 445555555555566655544
No 44
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=75.53 E-value=52 Score=28.29 Aligned_cols=127 Identities=24% Similarity=0.261 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHH--HHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHh
Q 027347 84 LALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSG--EIGAAA-EAWPVGIFGLFSILLFTPYFSKLILQV 160 (224)
Q Consensus 84 l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~--~l~~~l-~~pr~~l~~l~~~fvl~Plla~~l~~l 160 (224)
.++++|+++|++........+ ....+.+.+++|..|+++..+ .+++.. -++|..++.+.....- =+.++....+
T Consensus 3 ~~li~Gi~lG~~~~~~~~~~~--~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGS-llgg~l~~~l 79 (191)
T PF03956_consen 3 IALILGILLGYFLRPPFSLID--KISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGS-LLGGLLASLL 79 (191)
T ss_pred eeHHHHHHHHHHhcccccccc--cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 457889999998765522222 256777888888999887654 344433 2566665555543221 1333444444
Q ss_pred hcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Q 027347 161 QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNL----LGIMIVSYLFK 218 (224)
Q Consensus 161 ~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~L----l~~~itPll~~ 218 (224)
...+ +..++.+..-.===--|++..|+. +|..+. +.+.++|+ ++.+..|++.+
T Consensus 80 l~~~--~~~~lav~sG~GwYSlsg~~i~~~--~~~~~G-~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 80 LGLS--LKESLAVASGFGWYSLSGVLITQL--YGPELG-TIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred hcCC--HHHHHHHHccCcHHHhHHHHHHhh--hCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 222332221110000133423443 222222 23445554 79999999887
No 45
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=74.94 E-value=50 Score=31.86 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHhCCc---cccccccc--hhhHHHHHHHH-HhccccCHHHHHHHHhcchhHHH
Q 027347 68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSL---GCLADKYQ--LSKFSTFAIFI-VSGLTLRSGEIGAAAEAWPVGIF 141 (224)
Q Consensus 68 ~~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~---g~~~~~~~--~~~~~ialIff-~~Gl~L~~~~l~~~l~~pr~~l~ 141 (224)
++++|-.+|++|-.+|=-++.|++.+.+.|.. +.+.-+++ .... +.++|| ..|++-+.+.+++.-|.--..+.
T Consensus 22 ~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~-fmliFFttiglsa~~~~lkkgGk~l~if~~ 100 (404)
T COG0786 22 RFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDV-FMLIFFATIGLSASFKLLKKGGKKLAIFLA 100 (404)
T ss_pred HHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccH-HHHHHHHHhccccchhHHHhcChhHHHHHH
Confidence 35566678999988888888888888876533 22222333 2333 344555 78999999999886433222221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh-HhcccchhhHHHH----HHHh-cCCCHHHHHHHHHHHHHHHHHH
Q 027347 142 GLFSILLFTPYFSKLILQVQLQPQEFVTGLAL-FSCMPTTLSSGVA----LTHL-AGGNSALALAMTIISNLLGIMI 212 (224)
Q Consensus 142 ~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll-~~~~Pttv~S~Vv----~T~l-AgGNvalAl~lt~ls~Ll~~~i 212 (224)
....--++==.++.+++++...+|. .|++. --.+=+|=..+.+ +.+. +.+-..+++..++++.+.|.++
T Consensus 101 ~a~~l~~~Qn~igi~la~~lgidpl--~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A~~va~A~ATfGlv~Ggli 175 (404)
T COG0786 101 TAAGLAVLQNFIGIGLAKLLGLDPL--IGLLAGSISLVGGHGTAAAWGPTFEDLGAEGATEVAMASATFGLVAGGLI 175 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHH--HHHHhcceeecCCCchHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhc
Confidence 1111001111345556666566653 45544 1122222222222 3333 2344556677777777776554
No 46
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=74.89 E-value=70 Score=31.37 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhCCcccc-ccccchhhHHHHHHHHHhccccCHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCL-ADKYQLSKFSTFAIFIVSGLTLRSGEIGAAA 133 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~-~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l 133 (224)
......+++|+++|.. |..+.. .++...-...+..++|..|++++.+++++..
T Consensus 23 P~~v~lil~Gi~lg~~-~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~ 76 (525)
T TIGR00831 23 PYPIALILAGLLLGLA-GLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENF 76 (525)
T ss_pred CHHHHHHHHHHHHHhc-cccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4445667778888853 111111 1111123345667899999999999998743
No 47
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=74.78 E-value=79 Score=30.03 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCC-C
Q 027347 116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG-N 194 (224)
Q Consensus 116 Iff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgG-N 194 (224)
+--..|++++...+++.-|--...++..+......=..++++.+....|.. -.+++..|+|+..-. .+..+-| |
T Consensus 246 iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma-~~A~~l~ad 320 (352)
T COG3180 246 IGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMA-AIAAALGAD 320 (352)
T ss_pred HHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHH-HHHHHcCCC
Confidence 445678899988888865544555555555555555667777766555542 246789999987666 4555555 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347 195 SALALAMTIISNLLGIMIVSYLFKNDVM 222 (224)
Q Consensus 195 valAl~lt~ls~Ll~~~itPll~~~~~~ 222 (224)
.+.-..+-++=.++=.++.|.+.+..-.
T Consensus 321 ~a~V~a~q~lRll~il~i~p~l~r~l~~ 348 (352)
T COG3180 321 PAFVMALQVLRLLFILLLGPALARFLSK 348 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777777777777665543
No 48
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=70.42 E-value=50 Score=31.34 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=39.5
Q ss_pred HHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcc
Q 027347 114 FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCM 177 (224)
Q Consensus 114 alIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~ 177 (224)
.+||+..|.- -|+...+.|||..+++...|+.++ ..+..+...+.++..+..+-+.+..
T Consensus 73 ~LIF~GIGAm---tDFgpllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgA 131 (360)
T PF03977_consen 73 PLIFMGIGAM---TDFGPLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGA 131 (360)
T ss_pred HHHHHHHhHH---HhhHHHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccC
Confidence 4588888874 466677889999999999999874 4455554445555444444444444
No 49
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=65.73 E-value=1.2e+02 Score=28.53 Aligned_cols=33 Identities=24% Similarity=0.581 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcc
Q 027347 67 LNWAKPLLKIAADNFLPLALIGGVAFGFANPSLG 100 (224)
Q Consensus 67 ~~~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~g 100 (224)
..|.+-++|-+.++-. +.++.++++|++....+
T Consensus 165 ~~~~~~l~E~l~~~sv-~LLlGgliIG~~~g~~g 197 (327)
T PF05982_consen 165 ISWGELLHESLTNKSV-VLLLGGLIIGFLAGPEG 197 (327)
T ss_pred ccHHHHHHHHHcCchH-HHHHHHHHHhheeCccc
Confidence 3466666777777777 88999999999876554
No 50
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=62.89 E-value=67 Score=28.73 Aligned_cols=57 Identities=9% Similarity=-0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCcccccccc---chhhHHHHHHHHHhcc---ccCHHHHHHHHhcchhHHHHHH
Q 027347 88 GGVAFGFANPSLGCLADKY---QLSKFSTFAIFIVSGL---TLRSGEIGAAAEAWPVGIFGLF 144 (224)
Q Consensus 88 ~~vllg~~~P~~g~~~~~~---~~~~~~ialIff~~Gl---~L~~~~l~~~l~~pr~~l~~l~ 144 (224)
+.+.+-.+.|..|+..... .++-+.++.=++-+-+ +++++|.++..++.|...++..
T Consensus 149 i~llll~fIP~vg~~~~pvl~~~~~awll~~ey~d~~~~r~~~~~~~~r~~l~~~r~~~~gfG 211 (251)
T PRK04949 149 IVLLLLSFIPVVGQTVAPVLWFLFSAWMMAIQYCDYPFDNHKVSFKDMRAALRQKRGTSLQFG 211 (251)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhHhHHHHCCCCHHHHHHHHHHhhhHHHHHH
Confidence 3443334558887533221 1344444554443332 4899999999998887766654
No 51
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=62.80 E-value=38 Score=31.55 Aligned_cols=128 Identities=16% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027347 84 LALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQ 163 (224)
Q Consensus 84 l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~ 163 (224)
+.+++|..++-+.+...+..+. -.++++-.--+.+|.+++..++.++ .+...+++.. +.++.+.+.+.+.+++..
T Consensus 178 lplliG~~lgnl~~~l~~~~~~--Gi~~lLp~~~~~lG~~l~lq~i~~~--G~~GilL~~~-~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 178 LPLLVGFILGNLDPELRQFLGK--AVPVLIPFFAFALGNGIDLGTIITA--GLSGILLGVA-VVAVTGIPLYLADRLIGG 252 (326)
T ss_pred HHHHHHHHHHhHHHhhHHHhcC--CcEEEHHHHHHHHhcceeHhHHHhc--CCcchhhhhh-HhhccchhhHhHhheeec
Confidence 4455555555544432211111 1222344444558999998888653 3444444443 334567778888887744
Q ss_pred CHH---HHHH--HHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347 164 PQE---FVTG--LALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKN 219 (224)
Q Consensus 164 ~~~---l~~G--lll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~ 219 (224)
++. .+.+ ---..|-|-.++ ...-..++.+.-+....+...++..++.|++..+
T Consensus 253 ~~g~~g~a~~ttaG~aic~pAAva---a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~ 310 (326)
T PRK05274 253 GNGVAGAAAGSTAGNAVATPAAVA---AADPSFAPFAPAATAQVAAAVIVTAILAPILTAW 310 (326)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHH---hhccccccchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 2221 112223333321 1223335555555555555555666666666654
No 52
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=61.88 E-value=0.54 Score=42.93 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHhCCcccc-ccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHH-HHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCL-ADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF-SKL 156 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~-~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pll-a~~ 156 (224)
.-...-++.|+++|...-..-.- ...++ +..+.+..++|..|++++.+++++..++. +......+++.=.+ ++.
T Consensus 21 P~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ 97 (380)
T PF00999_consen 21 PSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRA---LALGLVGFLLPFILVGFL 97 (380)
T ss_dssp ---------------------------S-SSHHHHS--SSHHHHTTGGGG------------------------------
T ss_pred CHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc---cccccceeeehhhHHHHH
Confidence 33445566666666542221000 12222 56677888999999999999998865442 22222222221122 333
Q ss_pred HHH---hh--cCCHHHHHHHHhHhcccchhhHHHHHHH--hcCC-CHHHHHHHHHHHHHHHHHHHHHH
Q 027347 157 ILQ---VQ--LQPQEFVTGLALFSCMPTTLSSGVALTH--LAGG-NSALALAMTIISNLLGIMIVSYL 216 (224)
Q Consensus 157 l~~---l~--~~~~~l~~Glll~~~~Pttv~S~Vv~T~--lAgG-NvalAl~lt~ls~Ll~~~itPll 216 (224)
+.. .. .....+..|.++..+.|..+ +.+ ..+ ..++ ...+....+.++.+.+.++....
T Consensus 98 ~~~~~~~~~~~~~~al~l~~~~~~ts~~~v-~~~-l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~ 163 (380)
T PF00999_consen 98 LSFFLFILGLSWAEALLLGAILSATSPAIV-SPV-LKELGLLPSRLGRLLLSESVINDIIAIILLSIL 163 (380)
T ss_dssp ----------------TTHHHHTT--HHHH-HHH-H-HHHT-SSTTHHHHTTTTTTTTTTTTTTT---
T ss_pred HHHhhccchhhhHHHhhhHHhhhcccccch-hhh-hhhhhcccccccchhhhhchhhccchhhhhhhh
Confidence 332 11 22234666776666666664 333 222 2233 33344455555555555444443
No 53
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=61.34 E-value=61 Score=26.88 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=31.5
Q ss_pred ccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh
Q 027347 123 TLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLAL 173 (224)
Q Consensus 123 ~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll 173 (224)
+++.+|+.+.+++|+..+......++ .=+-+.++.. ...+|+...|+++
T Consensus 65 ki~~~~l~~~f~s~~g~~Ai~~Gilv-a~l~g~Gv~L-l~~~P~v~~gLvi 113 (140)
T PF04284_consen 65 KIGFKDLLNSFKSWKGIIAILAGILV-AWLGGRGVNL-LKVQPQVIVGLVI 113 (140)
T ss_pred CcCHHHHHHHHhCHHHHHHHHHHHHH-HHHhccChHH-HccCChhhHHHHH
Confidence 89999999999999987655443322 1233344432 4556777777665
No 54
>PRK04972 putative transporter; Provisional
Probab=60.40 E-value=1.7e+02 Score=29.24 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=57.9
Q ss_pred HHHHHHHhccccCHHH-HHHHHhc--chhHHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHHHH
Q 027347 113 TFAIFIVSGLTLRSGE-IGAAAEA--WPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALT 188 (224)
Q Consensus 113 ialIff~~Gl~L~~~~-l~~~l~~--pr~~l~~l~~~fvl~Plla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T 188 (224)
+.+.+|+....++-.. +.+.+++ ++..+.+.+...+- .++++.++ +++..++....|. +.++.=.+-+-+. .+
T Consensus 447 ~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~-~~~~~~~~~~~~k~~~~~~~G~-~aG~~t~~~~l~~-~~ 523 (558)
T PRK04972 447 FGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVP-VVICFLFGAYVLRMNRALLFGA-IMGARTCAPAMEI-IS 523 (558)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHH-HhCCCCCcHHHHH-HH
Confidence 4555665555444433 5566665 45555665554332 35567777 4588888888887 4555544433333 35
Q ss_pred HhcCCCH---HHHHHHHHHHHHHHHHHHHHHHH
Q 027347 189 HLAGGNS---ALALAMTIISNLLGIMIVSYLFK 218 (224)
Q Consensus 189 ~lAgGNv---alAl~lt~ls~Ll~~~itPll~~ 218 (224)
..++-|. +.+... .++|++=++..|+++.
T Consensus 524 ~~~~~~~~~~gYa~~y-p~~~il~~l~~~~iv~ 555 (558)
T PRK04972 524 DTARSNIPALGYAGTY-AIANVLLTLAGTLIVI 555 (558)
T ss_pred hhcCCCCcccccHhHH-HHHHHHHHHHHHHHHH
Confidence 5554332 233333 3567777788887776
No 55
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=58.99 E-value=95 Score=29.90 Aligned_cols=90 Identities=13% Similarity=0.009 Sum_probs=52.5
Q ss_pred HHHHHHhccccCHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcC
Q 027347 114 FAIFIVSGLTLRSGEIGAAAEAWPVGIF-GLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG 192 (224)
Q Consensus 114 alIff~~Gl~L~~~~l~~~l~~pr~~l~-~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAg 192 (224)
.+||+..|.-. |+...+.|||..++ +...|+.++= .+..+..++.+..-+ .++..-+-|+
T Consensus 109 ~LIFlGIGAMt---DFgpllanP~~~ll~gaaAQ~GiF~--t~~~A~~lGF~~~eA--------------AsIgIIGgAD 169 (399)
T TIGR03136 109 CILFFGIGAMS---DISFILARPWASITVALFAEMGTFA--TLVIGYYCGLTPGEA--------------AAVGTIGGAD 169 (399)
T ss_pred HHHHHhccHHh---cchHHHhChHHHHHHHHHHHhhHHH--HHHHHHHcCCCHHHh--------------hHHhhcccCC
Confidence 45888888744 56667789999999 7999998753 334443333333333 3333344445
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347 193 GNSALALAMTIISNLLGIMIVSYLFKNDVM 222 (224)
Q Consensus 193 GNvalAl~lt~ls~Ll~~~itPll~~~~~~ 222 (224)
|-.+.=++......+++++.+-.+.+-.+.
T Consensus 170 GPTaIf~s~kLAp~Llg~IaVAAYsYMaLV 199 (399)
T TIGR03136 170 GPMVLFASLILAKDLFVPISIIAYLYLSLT 199 (399)
T ss_pred ccHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 555544445555566666555554444443
No 56
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=58.75 E-value=1e+02 Score=30.67 Aligned_cols=99 Identities=10% Similarity=-0.003 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCcc---c-cccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHHH
Q 027347 83 PLALIGGVAFGFANPSLG---C-LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVG-IFGLFSILLFTPYFSKLI 157 (224)
Q Consensus 83 ~l~ii~~vllg~~~P~~g---~-~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~-l~~l~~~fvl~Plla~~l 157 (224)
.+.+++|+++|......+ . ..++-..-.+.+..|.|-.|.+++.+++++.++.--.. ..|.+.+.+++-...+.+
T Consensus 39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776531111 0 01111123345666889999999999999876542222 234445555444444444
Q ss_pred HHhhc-------CCHHHHHHHHhHhcccchh
Q 027347 158 LQVQL-------QPQEFVTGLALFSCMPTTL 181 (224)
Q Consensus 158 ~~l~~-------~~~~l~~Glll~~~~Pttv 181 (224)
..... ....+..|-++...=|.++
T Consensus 119 ~~~~~~~~~~l~~~~allfGAiiSaTDPVAV 149 (559)
T TIGR00840 119 CLIGGFGSIDIGLLDNLLFGSLISAVDPVAV 149 (559)
T ss_pred HhhccccccCCCHHHHHHHhHHhcCCchHHH
Confidence 32211 1123555555555555544
No 57
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=56.34 E-value=2e+02 Score=28.09 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=52.2
Q ss_pred HHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHhHhcccchhhHHHHHHH-
Q 027347 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLALFSCMPTTLSSGVALTH- 189 (224)
Q Consensus 113 ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~--~~l~~Glll~~~~Pttv~S~Vv~T~- 189 (224)
..+-|...|+++++..+.+ ++...+...+..++.-.+..+..++.++.+ ..+..|+.+.. .+--+-+..+.
T Consensus 282 ~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~---~Gef~lii~~~~ 355 (558)
T PRK10669 282 AVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQ---IGEFAFILAGLG 355 (558)
T ss_pred HHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhc---ccchHHHHHHHH
Confidence 3334457899999988764 344444444445555666666666655433 34777776543 23223332221
Q ss_pred hcCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347 190 LAGG--NSALALAMTIISNLLGIMIVSYLFKN 219 (224)
Q Consensus 190 lAgG--NvalAl~lt~ls~Ll~~~itPll~~~ 219 (224)
...| +..... ...+..++..+++|++...
T Consensus 356 ~~~gii~~~~~~-~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 356 MALNLLPQAGQN-LVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HhCCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1233 111111 2334456777778877654
No 58
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=55.34 E-value=83 Score=33.06 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccccCHHHHHH-H--HhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHH
Q 027347 111 FSTFAIFIVSGLTLRSGEIGA-A--AEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVAL 187 (224)
Q Consensus 111 ~~ialIff~~Gl~L~~~~l~~-~--l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~ 187 (224)
.+..++|++.|+.++.+++.. . ...|+..++++++.|+.-|..++.+..+.........-+++--.=|-|++|-+ +
T Consensus 299 LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIy-y 377 (810)
T TIGR00844 299 LLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVF-A 377 (810)
T ss_pred HHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHH-H
Confidence 455668889999999888743 1 23488999999999999998888754432211123344455555678877766 5
Q ss_pred HHhc
Q 027347 188 THLA 191 (224)
Q Consensus 188 T~lA 191 (224)
..+|
T Consensus 378 l~~A 381 (810)
T TIGR00844 378 AILS 381 (810)
T ss_pred HHHH
Confidence 5555
No 59
>PRK03818 putative transporter; Validated
Probab=52.50 E-value=2.5e+02 Score=27.94 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=54.5
Q ss_pred HHHHHHHhccccCHHH-HHHHHhc---chhHHHHHHHHHHHHH-HHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHH
Q 027347 113 TFAIFIVSGLTLRSGE-IGAAAEA---WPVGIFGLFSILLFTP-YFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVA 186 (224)
Q Consensus 113 ialIff~~Gl~L~~~~-l~~~l~~---pr~~l~~l~~~fvl~P-lla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv 186 (224)
+.+.+|+....++-.+ +.+.+++ ++..+.+.+. .+.| ++++.++ +++..++....|. +.++.=.+-+-+.
T Consensus 437 ~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v--~~~~~~~~~~~~~~~~~~~~~~~~G~-~aG~~t~tp~l~~- 512 (552)
T PRK03818 437 LGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLI--TAVPLLIVGILARMLAKMNYLTLCGM-LAGSMTDPPALAF- 512 (552)
T ss_pred HhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHH-HhccCCCcHHHHH-
Confidence 4556665555554443 6666544 3334444444 3445 4466665 4688998888898 4555544433344
Q ss_pred HHHh-cCCC-HHHHHHHH-HHHHHHHHHHHHHHHHH
Q 027347 187 LTHL-AGGN-SALALAMT-IISNLLGIMIVSYLFKN 219 (224)
Q Consensus 187 ~T~l-AgGN-valAl~lt-~ls~Ll~~~itPll~~~ 219 (224)
.+.. ++.| .+.+-..+ .++.+.-++..++++..
T Consensus 513 a~~~~~~~~~~~~gYa~~Yp~~~~~~i~~~~~~~~~ 548 (552)
T PRK03818 513 ANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVL 548 (552)
T ss_pred HhcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3553 5555 22222222 34556666666665543
No 60
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=52.35 E-value=60 Score=30.35 Aligned_cols=105 Identities=12% Similarity=0.018 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhH------hcccchh
Q 027347 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ-LQPQEFVTGLALF------SCMPTTL 181 (224)
Q Consensus 109 ~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~-~~~~~l~~Glll~------~~~Pttv 181 (224)
.+..+...-|..|.+++.+++.++ --..+++++... +++-...+...++. ..+. . .|...- .+.|..+
T Consensus 199 ~~~lIPF~~f~lGa~inl~~i~~a--Gl~GIlLgv~~~-~vtg~~~~~~dr~i~~~~g-~-aG~A~sstAGnavatPaai 273 (314)
T PF03812_consen 199 VPILIPFFGFALGAGINLSNIIKA--GLSGILLGVIVV-VVTGIPLYLADRLILKGNG-V-AGAAISSTAGNAVATPAAI 273 (314)
T ss_pred CCeeeehhhhhhcCCCCHHHHHHh--CcchHHHHHHHH-HHHhHHHHHHHHHHcCCCC-c-eeehHHhhhhhhhhhhHHH
Confidence 345566677889999999998774 233444444433 33444456555542 2222 1 132221 2234333
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 182 SSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 182 ~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~ 221 (224)
+..- -.....++.|....+.+.++..+++|++..++.
T Consensus 274 A~~d---P~~~~~~~~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 274 AAAD---PSFAPYAASATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred HHhC---hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 112456777888888888999999999988764
No 61
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=51.91 E-value=1.2e+02 Score=30.11 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=40.7
Q ss_pred HHHHHH--HhccccCHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcc
Q 027347 113 TFAIFI--VSGLTLRSGEIGAAAEA--WPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCM 177 (224)
Q Consensus 113 ialIff--~~Gl~L~~~~l~~~l~~--pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~ 177 (224)
+++++| ..|++.-++=+. .+|+ ++..+++++...+- =++++++++++..++..+.|++-=+..
T Consensus 62 ~gl~lFvy~vG~~~Gp~Ff~-~l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~g~~~~~~~Gl~aGalT 128 (562)
T TIGR03802 62 VFFALFIFAIGYEVGPQFFA-SLKKDGLREIILALVFAVSG-LITVYALAKIFGLDKGTAAGLAAGGLT 128 (562)
T ss_pred HHHHHHHHHhhhccCHHHHH-HHHhccHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhchhh
Confidence 444554 455666555454 4555 56666666655433 366788888899999999998764444
No 62
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=50.88 E-value=1.2e+02 Score=29.47 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHH--HHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH
Q 027347 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSI--LLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA 186 (224)
Q Consensus 109 ~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~--fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv 186 (224)
+....++-||..|+++|.|=+..-++++|-..+-.+.. =++.|.+.|... ...+++..-|--+-.+.=.+.+-.+
T Consensus 67 NDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~--n~~~~~~~~GW~Ip~ATDIAFalgv- 143 (423)
T PRK14853 67 ADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAV--NLAGGGALRGWAIPTATDIAFALAV- 143 (423)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHH--hCCchhhhhhhhhhhhhHHHHHHHH-
Confidence 33455666779999999888877788877555433322 245688777663 2234455566655555444444444
Q ss_pred HHHhcCC-CHHHH---HHHHHHHHHHHHHHH
Q 027347 187 LTHLAGG-NSALA---LAMTIISNLLGIMIV 213 (224)
Q Consensus 187 ~T~lAgG-NvalA---l~lt~ls~Ll~~~it 213 (224)
+..+.+. +.++- +..++++-+.+++++
T Consensus 144 LallG~rvp~~l~~FLlaLAIvDDl~AIiVI 174 (423)
T PRK14853 144 LAVIGTHLPSALRTFLLTLAVVDDLLAITVI 174 (423)
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4554444 44444 334456666666554
No 63
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=49.78 E-value=16 Score=33.61 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAA 132 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~ 132 (224)
.||.++.++..++.-+...+....+... ...+.+..-|...|++.+.+|+++.
T Consensus 244 P~FvlgFl~~~~l~s~~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 244 PWFVLGFLAASLLNSLGLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHhc
Confidence 4555666666655554432222122222 4666777778888888888888774
No 64
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=49.62 E-value=60 Score=31.67 Aligned_cols=100 Identities=16% Similarity=0.310 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHH--HHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH
Q 027347 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSIL--LFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA 186 (224)
Q Consensus 109 ~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~f--vl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv 186 (224)
+....++-||..|++++.|=+..-++++|-..+-.+... .+.|.+.|...- ..++. .-|.-+-.+.=.+-+-++
T Consensus 73 NDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n--~~~~~-~~GWgIPmATDIAFAlgv- 148 (438)
T PRK14856 73 DDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLN--ADTPS-QHGFGIPMATDIAFALGV- 148 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhhee--cCCCc-cCccccccHHHHHHHHHH-
Confidence 334556667799999999888888888876554444332 456877776532 12222 445444333333333333
Q ss_pred HHHhcCCCHHHHH-----HHHHHHHHHHHHHH
Q 027347 187 LTHLAGGNSALAL-----AMTIISNLLGIMIV 213 (224)
Q Consensus 187 ~T~lAgGNvalAl-----~lt~ls~Ll~~~it 213 (224)
+ .+.|..++.++ ++++++-+.+++++
T Consensus 149 L-allG~rvP~~LrvFLlaLAIvDDlgAI~VI 179 (438)
T PRK14856 149 I-MLLGKRVPTALKVFLITLAVADDLGAIVVI 179 (438)
T ss_pred H-HHhcCCCCHHHHHHHHHHHHHHHhhhHhhe
Confidence 2 33344444333 45556666666543
No 65
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=48.10 E-value=3e+02 Score=27.57 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHH
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGI--FGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGV 185 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l--~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~V 185 (224)
+..+++++|.|-.|++-+.+.++.++. |..-+ +|.++.-+ +.+...++++.+ +...|+++-+.+=+|.+.+|
T Consensus 63 vg~lALaiILfdgG~~T~lss~r~a~~-palsLATlGVl~Ts~---Ltg~aA~~ll~l--~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 63 VGNLALAIILFDGGFGTQLSSFRVAAG-PALSLATLGVLITSG---LTGVAAAYLLNL--DWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHhhcCccCCcHHHHHHHhh-hhHHHHHHHHHHHHH---HHHHHHHHHhcc--HHHHHHHHHHhhccccHHHH
Confidence 566788889999999999999987653 33333 22222222 233333333333 57889999999999998888
Q ss_pred HHHHh
Q 027347 186 ALTHL 190 (224)
Q Consensus 186 v~T~l 190 (224)
+.-+
T Consensus 137 -F~lL 140 (574)
T COG3263 137 -FSLL 140 (574)
T ss_pred -HHHH
Confidence 7766
No 66
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=48.09 E-value=81 Score=29.46 Aligned_cols=82 Identities=11% Similarity=-0.045 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHhCCccccccccc------hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 027347 80 NFLPLALIGGVAFGFANPSLGCLADKYQ------LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF 153 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~------~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pll 153 (224)
-.+.+=++++.++.-++|+.... +.++ -....+++.+|++|.+++.|+....+++--.++. ..+++-=++
T Consensus 13 g~m~vPl~lga~inTf~P~~l~i-G~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~---~K~~~~~~~ 88 (312)
T PRK12460 13 GMMVVPLLIGALINTFFPQALEI-GGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTI---TKLGVAIVI 88 (312)
T ss_pred ceeHHHHHHHHHHHhccCcchhh-CcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhh---HHHHHHHHH
Confidence 34445577888888888987432 2222 1234678888999999999999998877654433 344444466
Q ss_pred HHHHHHhhcCCH
Q 027347 154 SKLILQVQLQPQ 165 (224)
Q Consensus 154 a~~l~~l~~~~~ 165 (224)
++.+++++..+.
T Consensus 89 g~~~~~~~g~~g 100 (312)
T PRK12460 89 GLLVGKFFGAEG 100 (312)
T ss_pred HHHHHHHcCccc
Confidence 777777665443
No 67
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=47.66 E-value=34 Score=31.93 Aligned_cols=82 Identities=9% Similarity=0.050 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhCCccccccccc-----hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 027347 81 FLPLALIGGVAFGFANPSLGCLADKYQ-----LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSK 155 (224)
Q Consensus 81 ~~~l~ii~~vllg~~~P~~g~~~~~~~-----~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~ 155 (224)
.+.+=++++.++.-++|+.....+.++ -....+++.+|++|.+++.|+..+.++|--.++ +..+++-=++++
T Consensus 14 ~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~---~~K~~i~~~~g~ 90 (314)
T TIGR00793 14 MMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTLV---VTKIAVAWVVAA 90 (314)
T ss_pred eeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcceee---eHHHHHHHHHHH
Confidence 443556778888888898855434443 123467888899999999999998887765443 234444446677
Q ss_pred HHHHhhcCCH
Q 027347 156 LILQVQLQPQ 165 (224)
Q Consensus 156 ~l~~l~~~~~ 165 (224)
.+++++..+.
T Consensus 91 ~~~~~~g~~G 100 (314)
T TIGR00793 91 IASRIIPEDG 100 (314)
T ss_pred HHHHHcCcCC
Confidence 7887766543
No 68
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=43.67 E-value=2.5e+02 Score=25.47 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCH
Q 027347 116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNS 195 (224)
Q Consensus 116 Iff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNv 195 (224)
+|-...-+.+.+++.+ +.......+..+++.=++++.+.+++..+.+....+.+.++.+-+..-++.+....-|+.
T Consensus 46 iF~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~ 121 (385)
T PF03547_consen 46 IFSSIANTDTLEDLLS----LWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGER 121 (385)
T ss_pred HHHHHHhccchhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcch
Confidence 4433333344444443 555554444555555577788877777777777667777777777766666666666664
Q ss_pred HHH
Q 027347 196 ALA 198 (224)
Q Consensus 196 alA 198 (224)
+.+
T Consensus 122 ~~~ 124 (385)
T PF03547_consen 122 GVA 124 (385)
T ss_pred hhh
Confidence 433
No 69
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=42.93 E-value=28 Score=32.95 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ 161 (224)
Q Consensus 109 ~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~ 161 (224)
.-..+.+.||..|++.+.||+.++ | ..-+-+-+.|..+.-+.++++.+..
T Consensus 61 AelGViLLmFgvGLhfslkdLLav-k--~iAipgAl~qia~at~lg~gL~~~l 110 (408)
T COG4651 61 AELGVILLMFGVGLHFSLKDLLAV-K--AIAIPGALAQIALATLLGMGLSSLL 110 (408)
T ss_pred HHhhHHHHHHhcchheeHHHHhhH-H--HHhcchHHHHHHHHHHHHhHHHHHc
Confidence 345678899999999999999873 1 1123445556666667788887763
No 70
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=42.88 E-value=1e+02 Score=24.81 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=26.5
Q ss_pred HHHHHHhHhcccc-hhhH--HHHHHHhcCCCHHHHHHHHHHHHHH
Q 027347 167 FVTGLALFSCMPT-TLSS--GVALTHLAGGNSALALAMTIISNLL 208 (224)
Q Consensus 167 l~~Glll~~~~Pt-tv~S--~Vv~T~lAgGNvalAl~lt~ls~Ll 208 (224)
+++|+.+ ++.|. +... .+....+.++|...++..+.++|=+
T Consensus 26 ~AiG~fi-g~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~nPl 69 (154)
T PF09835_consen 26 FAIGVFI-GFLPIFGLQTVLAIALALLFRLNKPAAILGTWISNPL 69 (154)
T ss_pred HHHHHHH-HHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHHhHH
Confidence 3444433 36676 3333 3336788899999999998887633
No 71
>PRK05326 potassium/proton antiporter; Reviewed
Probab=40.74 E-value=2e+02 Score=28.25 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhHhcccchhhHHHHHH
Q 027347 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALT 188 (224)
Q Consensus 111 ~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~~~~Pttv~S~Vv~T 188 (224)
....++|+..|+.+++.++.+.. +..+++.++..++.=|+..+.....+..+. ...+|.. -|-|..+-+ +.
T Consensus 278 l~~~~~Fv~lGl~~~~~~l~~~~--~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~----g~RG~v~i~-lA 350 (562)
T PRK05326 278 LAQIGMFLVLGLLVTPSRLLDIA--LPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV----GLRGAVPIV-LA 350 (562)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee----cchhHHHHH-HH
Confidence 34455777899999998886432 333444444555666766665544333321 2333331 233322222 22
Q ss_pred Hh------cCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 027347 189 HL------AGGNS--ALALAMTIISNLLGIMIVSYLFKN 219 (224)
Q Consensus 189 ~l------AgGNv--alAl~lt~ls~Ll~~~itPll~~~ 219 (224)
.+ -+++. .....++.+|++++..++|.+...
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 351 TFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred HHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHH
Confidence 11 12222 344456678888888888876654
No 72
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=39.47 E-value=36 Score=32.75 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh-------hcCCHHHHHHHHhHhcccchhhH
Q 027347 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQV-------QLQPQEFVTGLALFSCMPTTLSS 183 (224)
Q Consensus 111 ~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l-------~~~~~~l~~Glll~~~~Pttv~S 183 (224)
.++..|++..|=++- ++.++...+.|.++...+.-+++.|+.+.++... ..+||-+..=+++.-.+|+++..
T Consensus 289 ~~IP~illvLGgnL~-~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~l 367 (408)
T KOG2722|consen 289 GAIPCILLVLGGNLI-QGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINL 367 (408)
T ss_pred ccchhhhhhhccccc-cCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhH
Confidence 355667777775553 3334555667777778888899999999887654 12667788888899999999988
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027347 184 GVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMY 223 (224)
Q Consensus 184 ~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~~~ 223 (224)
+- +|++-|=-+.-+-..-.-+-..+.+-.-+|...|+.|
T Consensus 368 g~-itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~l 406 (408)
T KOG2722|consen 368 GT-ITQLNGVAERECSVILFWTYAVASLSLTVWSVFFLWL 406 (408)
T ss_pred HH-HHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 87 7888775444444444445555555555555555544
No 73
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=38.82 E-value=2.2e+02 Score=26.71 Aligned_cols=107 Identities=15% Similarity=-0.007 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHhHhcccchhhHHHHH
Q 027347 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQL-QPQEFVTGLALFSCMPTTLSSGVAL 187 (224)
Q Consensus 109 ~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~-~~~~l~~Glll~~~~Pttv~S~Vv~ 187 (224)
.+..+...-|..|.+++.+++.++ --..+++++...+ ++-...|...++.. .++ .+ |...-.+.=.+++.-.+.
T Consensus 199 ~~~lIpFf~FaLGaginl~~i~~a--Gl~GIlLGl~v~~-vtG~~~~~~dr~~~g~~g-~a-G~A~sstAGnAvatPaav 273 (314)
T TIGR00793 199 VQTLIPFFAFALGNTIDLGVIIQT--GLLGILLGVSVII-LTGIPLILADKFIGGGDG-TA-GIAASSSAGAAVATPVLI 273 (314)
T ss_pred CCeeeehhhhhhcCCCCHHHHHHh--CcchHHHHHHHHH-HHhHHHHHHHHHhcCCCC-ch-hhHHHHHHHHhhhhHHHH
Confidence 455667777899999999998663 1234445554433 33344555555442 222 11 333322111111110100
Q ss_pred ---HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347 188 ---THLAGGNSALALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 188 ---T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~ 220 (224)
--.....++.|....+-+.+...+++|++..++
T Consensus 274 A~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~ 309 (314)
T TIGR00793 274 AEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWW 309 (314)
T ss_pred HHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111133556666666677777778888887765
No 74
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=38.19 E-value=1.2e+02 Score=28.87 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=54.6
Q ss_pred HHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCC
Q 027347 114 FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG 193 (224)
Q Consensus 114 alIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgG 193 (224)
.+||+..|.- -|+...+.|||..+++...|+.++= .+..+...+.++. +-.... -+.++..-.-|+|
T Consensus 67 ~LIFlGIGAm---tDFgpllanP~~~llGaaAQ~GiF~--t~~~A~~lGf~~~------~~~~~~--eAAsIgIIGgADG 133 (354)
T TIGR01109 67 LLIFMGIGAL---TDFGPLLANPRTLLLGAAAQFGIFA--TVFGALTLNFFGI------ISFSLP--QAAAIGIIGGADG 133 (354)
T ss_pred HHHHHhccHH---hhhHHHHhChHHHHHHHHHHhhHHH--HHHHHHHhCCCcc------cccChh--hceeeeeeccCCC
Confidence 4588888874 4566678899999999999998753 3333333222110 000011 1233333455555
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027347 194 NSALALAMTIISNLLGIMIVSYLFKNDVMY 223 (224)
Q Consensus 194 NvalAl~lt~ls~Ll~~~itPll~~~~~~~ 223 (224)
-.+.=++......+++++.+-.+.+..+.|
T Consensus 134 Pt~If~s~~lap~Llg~IaVAAYsYMaLvP 163 (354)
T TIGR01109 134 PTAIYLSGKLAPELLAAIAVAAYSYMALVP 163 (354)
T ss_pred chhhhhHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 555555555666677766665555544443
No 75
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=37.00 E-value=1.4e+02 Score=28.88 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 027347 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY 152 (224)
Q Consensus 113 ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pl 152 (224)
-.+||+..|.- .|+...+.|||..++|...|+.++-.
T Consensus 137 P~LIF~GIGAM---tDFgpLlanP~~~llGaAAQ~GIF~t 173 (433)
T PRK15477 137 PLVIFMGVGAM---TDFGPLLANPRTLLLGAAAQFGIFAT 173 (433)
T ss_pred HHHHHHhccHH---hcchHHhhCHHHHHHHHHHHhhHHHH
Confidence 35588888874 45666788999999999999987643
No 76
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=36.91 E-value=1.4e+02 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 027347 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY 152 (224)
Q Consensus 113 ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pl 152 (224)
-.+||+..|.- .|+...+.|||..++|...|+.++-.
T Consensus 137 P~LIF~GIGAM---tDFgpLlanP~~~llGaAAQ~GIF~t 173 (433)
T PRK15476 137 PLVIFMGVGAM---TDFGPLLANPRTLLLGAAAQFGIFAT 173 (433)
T ss_pred HHHHHHhccHH---hcchHHhhCHHHHHHHHHHHhhHHHH
Confidence 35578888874 45666788999999999999987643
No 77
>PRK03818 putative transporter; Validated
Probab=36.70 E-value=3.3e+02 Score=27.13 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHH--hccccCHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh
Q 027347 113 TFAIFIV--SGLTLRSGEIGAAAEA--WPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLAL 173 (224)
Q Consensus 113 ialIff~--~Gl~L~~~~l~~~l~~--pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll 173 (224)
+++.+|+ .|++--+ ++.+.+++ ++..+++.+...+ --++++.+.+++..++..+.|++-
T Consensus 65 ~gl~lFv~~vGl~~Gp-~f~~~l~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~a 127 (552)
T PRK03818 65 FGLILFVYTIGIQVGP-GFFSSLRKSGLRLNLFAVLIVIL-GGLVTAILHKLFGIPLPVMLGIFS 127 (552)
T ss_pred HHHHHHHHHHhhcccH-HHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHhh
Confidence 4555554 4555444 44455665 4555555554332 224567777778899888888754
No 78
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=36.17 E-value=1.5e+02 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 027347 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY 152 (224)
Q Consensus 113 ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pl 152 (224)
-.+||+..|.- .|+...+.|||..++|...|+.++-.
T Consensus 137 P~LIF~GIGAM---tDFgpLlanP~~~llGaAAQ~GIF~t 173 (433)
T PRK15475 137 PLVIFMGVGAM---TDFGPLLANPRTLLLGAAAQFGIFAT 173 (433)
T ss_pred HHHHHHhccHH---hcchHHhhCHHHHHHHHHHHhhHHHH
Confidence 35578888874 45666788999999999999987643
No 79
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=35.83 E-value=3.9e+02 Score=25.33 Aligned_cols=140 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcccc-ccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHH
Q 027347 68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCL-ADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSI 146 (224)
Q Consensus 68 ~~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~g~~-~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~ 146 (224)
.|+.++..-+.+....+.+...+.++..+|..... .....+..+.+-+.|-..|.+.+.+++.+ .|...+++.+.-
T Consensus 227 ~~l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l~g~~~lg~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~i~l 303 (378)
T PF05684_consen 227 AWLPPLFAGISSSTWLILTVTTLGLATSFPPFRKLLRGASELGTFLLYLFFAVIGASADISELLD---APSLFLFGFIIL 303 (378)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHhccchhhcCCchHHHHHHHHHHHHHHHccccCHHHHHH---hHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 027347 147 LLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMI 212 (224)
Q Consensus 147 fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~i 212 (224)
.+=+ ++.+++++++..| .....+.-.+++=+..+..++-+..-+.=+.-++.+.+++..+|-+.
T Consensus 304 ~iH~-~l~l~~~kl~k~~-l~~~~vAS~AnIGGpaTA~a~A~a~~~~Lv~pgvL~gvlGyaiGty~ 367 (378)
T PF05684_consen 304 AIHL-LLMLILGKLFKID-LFELLVASNANIGGPATAPAVAAAKGPSLVPPGVLMGVLGYAIGTYL 367 (378)
T ss_pred HHHH-HHHHHHHHHHCCC-HHHHHHHhhcccCCcchHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
No 80
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=35.76 E-value=3e+02 Score=24.97 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCccccccc---cchhhHHHHHHHHHh---ccccCHHHHHHHHhcchhHH
Q 027347 86 LIGGVAFGFANPSLGCLADK---YQLSKFSTFAIFIVS---GLTLRSGEIGAAAEAWPVGI 140 (224)
Q Consensus 86 ii~~vllg~~~P~~g~~~~~---~~~~~~~ialIff~~---Gl~L~~~~l~~~l~~pr~~l 140 (224)
.+++.++. +.|..|+.... +..+.++.+.-|+=+ --+++++|.+...++.|..-
T Consensus 146 ~ivll~L~-fvP~~g~~v~pv~~flft~wmlaiqy~dyp~dnhk~~f~~mr~~l~q~~~~~ 205 (250)
T COG2981 146 AIVLLLLL-FVPGVGQTVAPVAWFLFTAWMLAIQYFDYPADNHKVPFAEMRLLLRQYRVTV 205 (250)
T ss_pred HHHHHHHH-HhcccCChHHHHHHHHHHHHHHHHHHhccHHhcCCCcHHHHHHHHHHhhhHH
Confidence 33333333 44888763322 224556666666633 35889999999888766543
No 81
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=35.66 E-value=18 Score=32.84 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 110 KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ 161 (224)
Q Consensus 110 ~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~ 161 (224)
.+...+.|...|++++.+++......+...+...+..++.-++..+...+..
T Consensus 266 ~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 317 (380)
T PF00999_consen 266 GFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLF 317 (380)
T ss_dssp ----------------------------------------------------
T ss_pred HHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhc
Confidence 3445556678999999888864334455555555555555555555555443
No 82
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=32.82 E-value=3.6e+02 Score=24.10 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 027347 148 LFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSAL-ALAMTIISNLLGIMIVSYLFKND 220 (224)
Q Consensus 148 vl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNval-Al~lt~ls~Ll~~~itPll~~~~ 220 (224)
++.-.++|.+++.+..+.+-...+.+...+-.+.....+-+...++.++. +......-|+.+..+.-.+-..+
T Consensus 206 ~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~~~~~ 279 (286)
T TIGR00841 206 LAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLFLIIH 279 (286)
T ss_pred HHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677777777676655555555555555432222122223344444 33344455555555554444433
No 83
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=29.10 E-value=4.4e+02 Score=25.46 Aligned_cols=20 Identities=0% Similarity=-0.097 Sum_probs=14.1
Q ss_pred HHHhccccCHHHHHHHHhcch
Q 027347 117 FIVSGLTLRSGEIGAAAEAWP 137 (224)
Q Consensus 117 ff~~Gl~L~~~~l~~~l~~pr 137 (224)
+|.+. +++.||+.+.+++--
T Consensus 253 ~~iyr-~l~~~~l~~~l~~t~ 272 (425)
T PRK15060 253 VVIYR-EMTFSTLYHVLINAA 272 (425)
T ss_pred HHHHc-CcCHHHHHHHHHHHH
Confidence 34444 788999999877643
No 84
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=29.04 E-value=1.7e+02 Score=28.47 Aligned_cols=55 Identities=16% Similarity=-0.008 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhccc-cCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 027347 109 SKFSTFAIFIVSGLT-LRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ 165 (224)
Q Consensus 109 ~~~~ialIff~~Gl~-L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~ 165 (224)
..-....+++..|+. .+.+|+.+++ ++..+++.+..-... =+.++.++++.+..|
T Consensus 306 ~~~lt~~lLvgiGv~~~~l~~l~~a~-t~~~vv~~~~~Vl~~-~~~a~~vG~l~g~YP 361 (414)
T PF03390_consen 306 SKNLTWPLLVGIGVAYTDLNDLIAAF-TPQYVVIVLATVLGA-VIGAFLVGKLVGFYP 361 (414)
T ss_pred HHHHHHHHHHHHHhhhCcHHHHHHHh-CHHHHHHHHHHHHHH-HHHHHHHHHHhCCCh
Confidence 333456678888988 9999999998 777666666554433 477888898876555
No 85
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=25.22 E-value=1.8e+02 Score=27.57 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=33.1
Q ss_pred HHHHHHHhccc-cCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 027347 113 TFAIFIVSGLT-LRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ 165 (224)
Q Consensus 113 ialIff~~Gl~-L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~ 165 (224)
...+|...|+. .+++|+.++++ +....+....- +-+=+.++.++++++..|
T Consensus 243 t~~ll~giGla~t~l~~L~~a~t-~~~vviiv~~V-lg~ii~s~lvGKllG~YP 294 (347)
T TIGR00783 243 TWPLMVGVGVSYIDLDDLVAALS-WQFVVICLSVV-VAMILGGAFLGKLMGMYP 294 (347)
T ss_pred HHHHHHHcccccCCHHHHHHHhc-hhHhhhHHHHH-HHHHHHHHHHHHHhCCCh
Confidence 44466666876 89999999885 54444444433 333466788888876655
No 86
>COG2855 Predicted membrane protein [Function unknown]
Probab=20.66 E-value=3e+02 Score=26.05 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHH
Q 027347 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFS 145 (224)
Q Consensus 108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~ 145 (224)
...+++..-|...|++.+.++++++- .|+.+.+...
T Consensus 283 lst~ll~~aMaAlGL~t~i~~l~~~G--~kpl~la~~~ 318 (334)
T COG2855 283 LSTFLLAMAMAALGLTTHIKALKKAG--GKPLLLALLL 318 (334)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHcC--ccHHHHHHHH
Confidence 45566666778899999999999854 5555555443
No 87
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=20.45 E-value=2.3e+02 Score=19.03 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027347 66 GLNWAKPLLKIAADNFLPLALIGGVAFGF 94 (224)
Q Consensus 66 ~~~~~~~l~~fl~~~~~~l~ii~~vllg~ 94 (224)
..+|++.+.+.+.+.+. +.++++.++.+
T Consensus 33 ~~s~~~~~l~~~~~p~~-~iL~~~a~is~ 60 (64)
T smart00831 33 KRSPLLRFLRQFHNPLI-YILLAAAVLSA 60 (64)
T ss_pred CCCHHHHHHHHHHhHHH-HHHHHHHHHHH
Confidence 35677788777766555 44444444433
No 88
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=20.32 E-value=3.3e+02 Score=21.73 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=28.5
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhc
Q 027347 133 AEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSC 176 (224)
Q Consensus 133 l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~ 176 (224)
-+..|.+++|++...+++ +++|.+......++......++.++
T Consensus 22 ~~~~k~yviGFiLSiiLT-~I~F~~V~~~~l~~~~~~~~I~~lA 64 (110)
T TIGR02908 22 AEEMKKQIVTFALMIFLT-LIAFFAVMLDEIDKWFVIPFILLLA 64 (110)
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHHHhccCChhHHHHHHHHHH
Confidence 345788999999987776 5666666544456666555555444
Done!