Query 027347
Match_columns 224
No_of_seqs 143 out of 1323
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.9 1E-26 3.6E-31 210.9 18.2 149 69-221 8-156 (332)
2 1zcd_A Na(+)/H(+) antiporter 1 20.0 75 0.0026 29.0 3.6 100 109-214 64-172 (388)
3 3zux_A Transporter, ASBTNM; tr 9.7 8.3E+02 0.028 21.0 11.7 48 138-185 229-277 (332)
4 2ls4_A High affinity copper up 7.5 1.4E+02 0.0047 17.0 0.0 17 80-96 3-19 (26)
5 1tzs_X 23-MER peptide from PEL 4.2 4E+02 0.014 15.1 1.4 15 166-180 7-21 (26)
6 4dx5_A Acriflavine resistance 4.1 2.4E+03 0.083 20.8 10.7 21 201-221 477-497 (1057)
7 1q90_R Cytochrome B6-F complex 3.9 8.8E+02 0.03 15.4 3.5 22 75-98 13-34 (49)
8 3nd0_A SLL0855 protein; CLC fa 3.6 5.2E+02 0.018 23.6 2.5 15 81-95 31-45 (466)
9 2nwl_A GLTPH, glutamate sympor 3.1 1.5E+03 0.052 20.2 5.1 18 81-98 15-32 (422)
10 3tx3_A Uncharacterized protein 2.5 2.3E+03 0.078 17.5 9.1 57 87-144 152-211 (249)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.95 E-value=1e-26 Score=210.95 Aligned_cols=149 Identities=23% Similarity=0.231 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHH
Q 027347 69 WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL 148 (224)
Q Consensus 69 ~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fv 148 (224)
+++|+.+|+ ++++++++++++++|+++|+.+...+. ..+++++++||.+|++++.+|+++.++|||.++.+++.||+
T Consensus 8 ~l~~~~~~l-~~~~~l~i~~~~~lg~~~P~~~~~~~~--~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 8 ILSKISSFI-GKTFSLWAALFAAAAFFAPDTFKWAGP--YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HHHHHHHHH-HHTHHHHHHHHHHHHHHCGGGTGGGGG--GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHcchhhhhhHH--HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 568889999 578889999999999999998765543 45678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347 149 FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 149 l~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~ 221 (224)
++|+++|++++++.++++++.|+++++||||+.+|++ ||+++|||+++++.++++||+++++++|+++..+.
T Consensus 85 i~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v-~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 85 IMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999998764
No 2
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=20.04 E-value=75 Score=28.99 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhccccCHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH
Q 027347 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPV--GIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA 186 (224)
Q Consensus 109 ~~~~ialIff~~Gl~L~~~~l~~~l~~pr~--~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv 186 (224)
+...+++.||..|+++|.|.+...++++|- .-.....-=++.|.+.|.. +...+++-..| ...|+++.-..+
T Consensus 64 ndglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~--~~~~~~~~~~g----w~ip~ATdIAfa 137 (388)
T 1zcd_A 64 NDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA--FNYADPITREG----WAIPAATDIAFA 137 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG--GCCSSTTHHHH----TSSSSCCCHHHH
T ss_pred hhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HhcCChhhhhh----hHHHHHHHHHHH
Confidence 445677888999999999877544554433 1122222235668777532 12223333333 333444333332
Q ss_pred HHHhc---CC---CH-HHHHHHHHHHHHHHHHHHH
Q 027347 187 LTHLA---GG---NS-ALALAMTIISNLLGIMIVS 214 (224)
Q Consensus 187 ~T~lA---gG---Nv-alAl~lt~ls~Ll~~~itP 214 (224)
++-++ +- .. ...+..++++-+.+++++=
T Consensus 138 l~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIA 172 (388)
T 1zcd_A 138 LGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIA 172 (388)
T ss_dssp HHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 21 11 4566666677776666543
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=9.74 E-value=8.3e+02 Score=20.96 Aligned_cols=48 Identities=6% Similarity=-0.059 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh-HhcccchhhHHH
Q 027347 138 VGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLAL-FSCMPTTLSSGV 185 (224)
Q Consensus 138 ~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll-~~~~Pttv~S~V 185 (224)
..+...+..+++.-.++|.+++.++.+.+-...+.+ ++.=-++.+..+
T Consensus 229 ~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~l 277 (332)
T 3zux_A 229 LIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAAL 277 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHH
Confidence 344444455566667888888888888877777777 444444444444
No 4
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.46 E-value=1.4e+02 Score=17.00 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 027347 80 NFLPLALIGGVAFGFAN 96 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~ 96 (224)
-|+.+++++|..+|++.
T Consensus 3 g~l~iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYFL 19 (26)
Confidence 35667888888888764
No 5
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=4.20 E-value=4e+02 Score=15.09 Aligned_cols=15 Identities=27% Similarity=0.487 Sum_probs=10.4
Q ss_pred HHHHHHHhHhcccch
Q 027347 166 EFVTGLALFSCMPTT 180 (224)
Q Consensus 166 ~l~~Glll~~~~Ptt 180 (224)
..+.|+++...-|+=
T Consensus 7 piAaGLLLa~sqp~l 21 (26)
T 1tzs_X 7 TAAAGLLLLAAQPAM 21 (26)
T ss_pred hHHHHHHHHhcChHh
Confidence 467788777777653
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.06 E-value=2.4e+03 Score=20.84 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027347 201 MTIISNLLGIMIVSYLFKNDV 221 (224)
Q Consensus 201 lt~ls~Ll~~~itPll~~~~~ 221 (224)
...+|.+++.+++|.++..+.
T Consensus 477 gl~~s~~~~l~~~P~l~~~~~ 497 (1057)
T 4dx5_A 477 AMALSVLVALILTPALCATML 497 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445778889999999887653
No 7
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=3.94 E-value=8.8e+02 Score=15.44 Aligned_cols=22 Identities=18% Similarity=-0.017 Sum_probs=12.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhCC
Q 027347 75 KIAADNFLPLALIGGVAFGFANPS 98 (224)
Q Consensus 75 ~fl~~~~~~l~ii~~vllg~~~P~ 98 (224)
+|+ |++.+.....+.++...|.
T Consensus 13 qfl--n~l~~G~~a~~a~~~~~P~ 34 (49)
T 1q90_R 13 NIM--NLILAGGAGLPITTLALGY 34 (49)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhh
Confidence 455 3454677777666666553
No 8
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=3.63 E-value=5.2e+02 Score=23.62 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027347 81 FLPLALIGGVAFGFA 95 (224)
Q Consensus 81 ~~~l~ii~~vllg~~ 95 (224)
|..+++++|++.|..
T Consensus 31 l~l~~~liGi~~Gl~ 45 (466)
T 3nd0_A 31 TLVAAIVVGLITGVL 45 (466)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666777766653
No 9
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=3.06 E-value=1.5e+03 Score=20.21 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 027347 81 FLPLALIGGVAFGFANPS 98 (224)
Q Consensus 81 ~~~l~ii~~vllg~~~P~ 98 (224)
...+++++|+++|+++|.
T Consensus 15 ~ili~lvlGi~~G~~~~~ 32 (422)
T 2nwl_A 15 KILIGLILGAIVGLILGH 32 (422)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 345899999999999874
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=2.50 E-value=2.3e+03 Score=17.51 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCccccccccchhhHHHHHHHHHhcc---ccCHHHHHHHHhcchhHHHHHH
Q 027347 87 IGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGL---TLRSGEIGAAAEAWPVGIFGLF 144 (224)
Q Consensus 87 i~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl---~L~~~~l~~~l~~pr~~l~~l~ 144 (224)
+....+.++.|..|.. -.+.++.+..+.-++-+-. +++.+|.++..|+.|....+..
T Consensus 152 l~ll~L~f~IP~vg~v-l~~~~~~~~lg~ey~d~~~~r~~~~~~~~~~~lr~~r~~~~~fG 211 (249)
T 3tx3_A 152 LGFFLLSLVIPVIGQV-LWYIFVCWMMSIQYLDYPFDNHKLSFPRMRSELHQQRSKTLGFG 211 (249)
T ss_dssp HHHHHHHHHSTTHHHH-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHHHHHH
Confidence 3344444436876641 1111333444443332222 3789999999998887665543
Done!