Query 027347
Match_columns 224
No_of_seqs 143 out of 1323
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 14:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027347.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027347hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 15.0 74 0.0054 17.7 2.9 23 75-99 6-28 (34)
2 d1jb0i_ f.23.17.1 (I:) Subunit 4.6 3.3E+02 0.024 15.2 2.9 11 147-157 12-22 (38)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 4.6 1.9E+02 0.014 18.8 2.2 21 81-101 6-26 (158)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.2 5.1E+02 0.037 20.6 5.1 20 80-100 4-23 (405)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 3.9 4.2E+02 0.03 21.6 4.4 21 63-83 43-63 (472)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.3 2.9E+02 0.021 21.4 2.5 19 136-154 53-73 (248)
7 d2bwba1 a.5.2.1 (A:328-371) DS 2.9 2.7E+02 0.019 16.1 1.4 13 188-200 27-39 (44)
8 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 2.8 3E+02 0.022 16.3 1.5 13 188-200 30-42 (50)
9 d1gg4a4 c.72.2.1 (A:99-312) UD 2.8 4.5E+02 0.033 17.8 3.0 23 115-137 191-213 (214)
10 d1e8ca3 c.72.2.1 (A:104-337) U 2.7 4.2E+02 0.03 18.4 2.7 22 116-137 212-233 (234)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.03 E-value=74 Score=17.67 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhCCc
Q 027347 75 KIAADNFLPLALIGGVAFGFANPSL 99 (224)
Q Consensus 75 ~fl~~~~~~l~ii~~vllg~~~P~~ 99 (224)
+|. |.+.++.+.++.+|.++|..
T Consensus 6 qfm--nlltfgt~tg~alg~lypvv 28 (34)
T d2e74d2 6 QFM--NLLAFGTVTGVALGALYPLV 28 (34)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHhhHHHHHHhhhhhHH
Confidence 454 56678999999999988753
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.62 E-value=3.3e+02 Score=15.25 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 027347 147 LLFTPYFSKLI 157 (224)
Q Consensus 147 fvl~Plla~~l 157 (224)
+++.|+++|+.
T Consensus 12 wI~iPvv~wl~ 22 (38)
T d1jb0i_ 12 WIFIPVVCWLM 22 (38)
T ss_dssp HHHHHHHHTHH
T ss_pred hhHHHHHHHHH
Confidence 44556666554
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.61 E-value=1.9e+02 Score=18.85 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhCCccc
Q 027347 81 FLPLALIGGVAFGFANPSLGC 101 (224)
Q Consensus 81 ~~~l~ii~~vllg~~~P~~g~ 101 (224)
++.+..++|++.++..|....
T Consensus 6 LlVViaIIgILaaia~P~~~~ 26 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQD 26 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455888899999999887643
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.15 E-value=5.1e+02 Score=20.61 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHhCCcc
Q 027347 80 NFLPLALIGGVAFGFANPSLG 100 (224)
Q Consensus 80 ~~~~l~ii~~vllg~~~P~~g 100 (224)
|.+ +++++|+++|.+++..+
T Consensus 4 ril-i~lv~Gi~~G~~~~~~~ 23 (405)
T d2nwwa1 4 KIL-IGLILGAIVGLILGHYG 23 (405)
T ss_dssp HHH-HHHHHHHHHHHHHHTTT
T ss_pred HHH-HHHHHHHHHHHHHcccc
Confidence 344 88999999999887653
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.90 E-value=4.2e+02 Score=21.59 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=14.1
Q ss_pred cccchhhHHHHHHHHHHhHHH
Q 027347 63 SSKGLNWAKPLLKIAADNFLP 83 (224)
Q Consensus 63 ~~~~~~~~~~l~~fl~~~~~~ 83 (224)
+.++++|++.+.+-++|.+..
T Consensus 43 ~~~~~s~~~~~~~~~~~~~~~ 63 (472)
T d1wpga4 43 AEEGKSLWELVIEQFEDLLVR 63 (472)
T ss_dssp CCCCCCHHHHHHHHTCSHHHH
T ss_pred CCCCCCHHHHHHHHHhCHHHH
Confidence 344577888888877665553
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.30 E-value=2.9e+02 Score=21.41 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=12.3
Q ss_pred chhHH--HHHHHHHHHHHHHH
Q 027347 136 WPVGI--FGLFSILLFTPYFS 154 (224)
Q Consensus 136 pr~~l--~~l~~~fvl~Plla 154 (224)
+|.++ +.+++.|++.|++-
T Consensus 53 ~kyi~PG~~~l~~Fvi~Pi~y 73 (248)
T d2r6gf1 53 WRYVYPGMAGMGLFVLFPLVC 73 (248)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH
T ss_pred eehhhhHHHHHHHHHHHhhee
Confidence 44444 45667788889754
No 7
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.93 E-value=2.7e+02 Score=16.06 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=9.4
Q ss_pred HHhcCCCHHHHHH
Q 027347 188 THLAGGNSALALA 200 (224)
Q Consensus 188 T~lAgGNvalAl~ 200 (224)
=..++||+..|+=
T Consensus 27 L~~t~GdV~~Aie 39 (44)
T d2bwba1 27 LRRSGGSVQGALD 39 (44)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHcCCCHHHHHH
Confidence 3567888888764
No 8
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.78 E-value=3e+02 Score=16.32 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHhcCCCHHHHHH
Q 027347 188 THLAGGNSALALA 200 (224)
Q Consensus 188 T~lAgGNvalAl~ 200 (224)
=..++||+..|+=
T Consensus 30 L~~t~GdV~~Aie 42 (50)
T d2dnaa1 30 LIATDGDTNAAIY 42 (50)
T ss_dssp HHHTTSCHHHHHH
T ss_pred HHHcCCCHHHHHH
Confidence 3567889888764
No 9
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Probab=2.76 E-value=4.5e+02 Score=17.81 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=16.5
Q ss_pred HHHHHhccccCHHHHHHHHhcch
Q 027347 115 AIFIVSGLTLRSGEIGAAAEAWP 137 (224)
Q Consensus 115 lIff~~Gl~L~~~~l~~~l~~pr 137 (224)
.+....-+.++.+++.+++++-|
T Consensus 191 Aia~~~~lgi~~~~i~~~l~~fk 213 (214)
T d1gg4a4 191 AAALSMSVGATLDAIKAGLANLK 213 (214)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHhcC
Confidence 34444556789999999988754
No 10
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
Probab=2.71 E-value=4.2e+02 Score=18.36 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=15.8
Q ss_pred HHHHhccccCHHHHHHHHhcch
Q 027347 116 IFIVSGLTLRSGEIGAAAEAWP 137 (224)
Q Consensus 116 Iff~~Gl~L~~~~l~~~l~~pr 137 (224)
+-...-+.++.+++.+++++-+
T Consensus 212 iava~~lGi~~~~i~~~l~~fk 233 (234)
T d1e8ca3 212 LATLLALGYPLADLLKTAARLQ 233 (234)
T ss_dssp HHHHHHTTCCHHHHHHHGGGCC
T ss_pred HHHHHHcCCCHHHHHHHHhhCC
Confidence 3334456788999999988765
Done!