Query 027350
Match_columns 224
No_of_seqs 32 out of 34
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 08:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11932 DUF3450: Protein of u 95.3 0.81 1.8E-05 39.2 13.6 42 79-120 45-86 (251)
2 PF05529 Bap31: B-cell recepto 95.2 0.24 5.2E-06 40.7 9.7 87 18-119 104-190 (192)
3 PRK11637 AmiB activator; Provi 94.8 1.6 3.4E-05 40.1 14.7 23 39-61 49-71 (428)
4 PRK11637 AmiB activator; Provi 92.7 2.2 4.7E-05 39.2 11.7 23 39-61 42-64 (428)
5 PHA02562 46 endonuclease subun 92.5 7.5 0.00016 35.8 14.9 99 39-137 308-419 (562)
6 COG4942 Membrane-bound metallo 91.5 8.7 0.00019 37.3 14.6 79 44-126 38-116 (420)
7 PF08232 Striatin: Striatin fa 90.7 1.3 2.8E-05 35.9 7.1 47 76-122 18-64 (134)
8 KOG4196 bZIP transcription fac 90.6 3.1 6.8E-05 35.2 9.4 79 35-115 30-113 (135)
9 PF11365 DUF3166: Protein of u 89.8 0.98 2.1E-05 35.8 5.6 36 87-122 5-40 (96)
10 PF04156 IncA: IncA protein; 89.5 9.9 0.00021 30.7 15.2 67 40-110 84-150 (191)
11 PF09304 Cortex-I_coil: Cortex 89.4 10 0.00022 30.9 11.4 77 39-133 11-91 (107)
12 COG4942 Membrane-bound metallo 88.6 7.8 0.00017 37.6 11.7 69 54-130 38-106 (420)
13 TIGR01843 type_I_hlyD type I s 88.2 17 0.00036 31.7 12.8 50 74-123 135-184 (423)
14 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.9 12 0.00026 29.6 10.8 61 43-103 58-118 (132)
15 PF09726 Macoilin: Transmembra 87.7 4.1 8.8E-05 41.2 9.6 71 47-120 505-575 (697)
16 PF09744 Jnk-SapK_ap_N: JNK_SA 87.1 12 0.00025 31.6 10.6 41 78-118 84-124 (158)
17 PF12329 TMF_DNA_bd: TATA elem 86.4 11 0.00024 27.8 9.7 68 42-120 3-70 (74)
18 PF03962 Mnd1: Mnd1 family; I 86.1 20 0.00044 30.4 12.3 87 40-131 65-155 (188)
19 PF10211 Ax_dynein_light: Axon 85.9 20 0.00043 30.4 11.5 55 85-139 122-176 (189)
20 PRK10884 SH3 domain-containing 85.5 18 0.00039 31.5 11.3 64 41-118 90-160 (206)
21 TIGR01843 type_I_hlyD type I s 85.2 23 0.0005 30.9 11.8 53 70-122 124-176 (423)
22 PF02403 Seryl_tRNA_N: Seryl-t 84.9 9.6 0.00021 28.5 8.2 28 39-66 31-58 (108)
23 PRK01156 chromosome segregatio 84.4 21 0.00044 35.6 12.5 66 44-110 650-715 (895)
24 COG2433 Uncharacterized conser 84.4 17 0.00036 37.3 12.0 41 64-104 424-464 (652)
25 PRK09039 hypothetical protein; 84.2 34 0.00074 31.4 15.3 43 88-130 135-177 (343)
26 PF04111 APG6: Autophagy prote 83.7 9.1 0.0002 34.7 9.0 30 172-202 147-177 (314)
27 PF00769 ERM: Ezrin/radixin/mo 81.3 36 0.00078 30.0 11.6 78 39-120 35-112 (246)
28 KOG4571 Activating transcripti 81.2 9.8 0.00021 35.6 8.4 46 83-128 241-286 (294)
29 PF00261 Tropomyosin: Tropomyo 80.8 35 0.00077 29.3 12.7 51 80-130 159-209 (237)
30 PF12709 Kinetocho_Slk19: Cent 80.7 12 0.00026 29.5 7.5 64 42-110 13-76 (87)
31 PF08317 Spc7: Spc7 kinetochor 79.8 37 0.0008 30.6 11.4 35 86-120 212-246 (325)
32 PF04380 BMFP: Membrane fusoge 79.8 3.9 8.6E-05 30.4 4.5 30 89-118 49-78 (79)
33 TIGR03752 conj_TIGR03752 integ 78.4 24 0.00051 34.9 10.4 76 39-114 61-140 (472)
34 PF04977 DivIC: Septum formati 78.1 13 0.00028 25.7 6.4 47 83-133 17-63 (80)
35 PF08614 ATG16: Autophagy prot 77.1 24 0.00052 29.4 8.8 24 39-62 69-92 (194)
36 PRK10361 DNA recombination pro 77.0 64 0.0014 31.8 12.8 50 79-128 56-105 (475)
37 TIGR01000 bacteriocin_acc bact 76.9 22 0.00048 33.0 9.3 28 63-90 271-298 (457)
38 PRK03918 chromosome segregatio 76.9 75 0.0016 31.2 13.3 37 76-112 238-274 (880)
39 PF12761 End3: Actin cytoskele 76.5 8.7 0.00019 33.9 6.3 42 98-146 97-150 (195)
40 PF04977 DivIC: Septum formati 76.2 12 0.00025 25.9 5.7 44 80-123 21-64 (80)
41 TIGR02169 SMC_prok_A chromosom 76.1 80 0.0017 31.3 13.3 8 49-56 182-189 (1164)
42 COG1579 Zn-ribbon protein, pos 76.1 60 0.0013 29.3 12.0 45 76-120 96-140 (239)
43 PF08614 ATG16: Autophagy prot 75.9 8.4 0.00018 32.1 5.8 89 39-130 90-181 (194)
44 PF12240 Angiomotin_C: Angiomo 75.9 5.2 0.00011 35.7 4.8 35 96-130 128-162 (205)
45 PF12128 DUF3584: Protein of u 75.0 69 0.0015 33.9 13.2 71 39-110 773-843 (1201)
46 COG1579 Zn-ribbon protein, pos 74.8 66 0.0014 29.1 13.4 39 83-121 89-127 (239)
47 PRK11091 aerobic respiration c 74.5 67 0.0014 30.9 12.1 43 88-130 108-150 (779)
48 PHA02562 46 endonuclease subun 74.0 57 0.0012 30.2 11.1 24 11-34 114-139 (562)
49 TIGR02169 SMC_prok_A chromosom 73.9 93 0.002 30.9 13.1 6 51-56 198-203 (1164)
50 TIGR03185 DNA_S_dndD DNA sulfu 73.0 33 0.00071 33.5 9.8 40 71-110 250-289 (650)
51 PRK05431 seryl-tRNA synthetase 72.7 23 0.00051 33.3 8.5 66 39-119 30-95 (425)
52 PRK02224 chromosome segregatio 72.7 1E+02 0.0022 30.6 13.1 25 86-110 656-680 (880)
53 COG1340 Uncharacterized archae 72.6 66 0.0014 30.1 11.2 78 39-130 8-85 (294)
54 PF05149 Flagellar_rod: Parafl 72.6 82 0.0018 29.3 13.3 94 46-146 15-116 (289)
55 PF14362 DUF4407: Domain of un 71.5 69 0.0015 28.0 10.9 31 87-117 132-162 (301)
56 PF07888 CALCOCO1: Calcium bin 71.2 1E+02 0.0022 31.1 12.9 35 76-110 206-240 (546)
57 PF09849 DUF2076: Uncharacteri 71.2 16 0.00035 32.8 6.8 65 39-115 9-73 (247)
58 KOG0982 Centrosomal protein Nu 71.2 1.2E+02 0.0026 30.5 13.6 95 39-133 252-347 (502)
59 PF02403 Seryl_tRNA_N: Seryl-t 70.1 22 0.00048 26.6 6.4 47 79-125 46-95 (108)
60 TIGR00606 rad50 rad50. This fa 70.0 1.1E+02 0.0023 32.7 13.3 56 76-131 312-374 (1311)
61 PF11471 Sugarporin_N: Maltopo 69.5 6.6 0.00014 28.5 3.3 46 19-66 7-53 (60)
62 PF04899 MbeD_MobD: MbeD/MobD 69.5 31 0.00066 25.9 6.9 49 73-121 18-66 (70)
63 KOG0250 DNA repair protein RAD 69.4 89 0.0019 34.0 12.6 56 77-132 395-450 (1074)
64 PF09730 BicD: Microtubule-ass 69.2 87 0.0019 32.4 12.1 55 40-94 30-87 (717)
65 PRK10803 tol-pal system protei 69.0 21 0.00044 31.5 6.9 38 86-123 57-94 (263)
66 PRK00888 ftsB cell division pr 68.8 23 0.00049 27.7 6.4 51 83-137 27-77 (105)
67 PRK10884 SH3 domain-containing 68.6 80 0.0017 27.5 10.8 72 39-120 95-169 (206)
68 TIGR00414 serS seryl-tRNA synt 68.5 33 0.00071 32.2 8.5 28 39-66 32-59 (418)
69 PF04859 DUF641: Plant protein 67.8 21 0.00044 29.6 6.2 104 11-118 13-129 (131)
70 PRK02224 chromosome segregatio 67.8 1.3E+02 0.0029 29.8 12.8 35 78-112 553-587 (880)
71 PF02050 FliJ: Flagellar FliJ 67.6 40 0.00088 23.7 11.8 73 40-112 8-81 (123)
72 KOG4797 Transcriptional regula 67.3 9.4 0.0002 31.9 4.2 30 93-122 63-92 (123)
73 PRK09841 cryptic autophosphory 67.1 1E+02 0.0023 30.7 12.0 88 39-130 276-389 (726)
74 PLN02678 seryl-tRNA synthetase 66.8 42 0.00091 32.4 9.0 28 39-66 35-62 (448)
75 COG1196 Smc Chromosome segrega 66.5 1.4E+02 0.003 31.5 13.2 45 83-127 730-774 (1163)
76 PF07544 Med9: RNA polymerase 66.5 20 0.00044 26.7 5.5 45 88-132 33-80 (83)
77 COG1340 Uncharacterized archae 66.3 78 0.0017 29.6 10.3 60 39-109 43-102 (294)
78 PF01166 TSC22: TSC-22/dip/bun 66.0 4.5 9.7E-05 30.1 1.9 28 94-121 11-38 (59)
79 TIGR02231 conserved hypothetic 65.9 1.2E+02 0.0027 28.7 11.9 44 88-131 129-172 (525)
80 PF05276 SH3BP5: SH3 domain-bi 65.7 1E+02 0.0022 27.7 12.6 86 41-126 118-206 (239)
81 TIGR02680 conserved hypothetic 64.7 2.1E+02 0.0046 31.0 15.0 37 39-75 232-268 (1353)
82 COG2919 Septum formation initi 64.6 20 0.00043 28.3 5.4 46 87-136 54-99 (117)
83 PF11853 DUF3373: Protein of u 64.4 6.4 0.00014 38.7 3.1 36 83-118 24-59 (489)
84 PF10224 DUF2205: Predicted co 64.1 61 0.0013 24.9 7.8 49 82-130 15-63 (80)
85 PRK04863 mukB cell division pr 64.1 2.4E+02 0.0053 31.4 15.2 21 10-30 253-273 (1486)
86 PF13935 Ead_Ea22: Ead/Ea22-li 64.1 76 0.0016 25.6 9.1 21 39-59 69-89 (139)
87 COG2433 Uncharacterized conser 63.8 63 0.0014 33.4 9.9 42 85-126 469-510 (652)
88 PF00170 bZIP_1: bZIP transcri 63.5 47 0.001 23.1 7.3 30 88-117 31-60 (64)
89 COG1196 Smc Chromosome segrega 63.1 1.8E+02 0.0038 30.7 13.2 90 40-129 196-285 (1163)
90 TIGR03319 YmdA_YtgF conserved 63.0 1.6E+02 0.0034 28.9 15.7 14 44-57 25-38 (514)
91 PF14965 BRI3BP: Negative regu 62.9 15 0.00032 32.3 4.7 42 20-61 135-176 (177)
92 PF04201 TPD52: Tumour protein 62.7 23 0.0005 30.6 5.8 37 82-118 28-64 (162)
93 PF12808 Mto2_bdg: Micro-tubul 62.7 23 0.0005 25.5 4.9 25 86-110 25-49 (52)
94 PF07716 bZIP_2: Basic region 61.8 40 0.00086 23.0 5.8 35 85-119 20-54 (54)
95 PF05308 Mito_fiss_reg: Mitoch 61.5 9.6 0.00021 34.2 3.5 20 89-108 121-140 (253)
96 COG3883 Uncharacterized protei 61.4 1.4E+02 0.003 27.6 11.9 38 93-130 69-106 (265)
97 PF04111 APG6: Autophagy prote 61.3 94 0.002 28.4 9.7 38 82-119 56-93 (314)
98 PF07888 CALCOCO1: Calcium bin 60.8 1.9E+02 0.0042 29.2 13.4 51 80-130 196-246 (546)
99 PF00170 bZIP_1: bZIP transcri 60.7 43 0.00093 23.3 6.0 32 99-130 28-59 (64)
100 COG5185 HEC1 Protein involved 60.7 2.1E+02 0.0044 29.5 16.0 127 11-137 228-391 (622)
101 PF09789 DUF2353: Uncharacteri 60.6 84 0.0018 29.6 9.5 82 39-133 88-173 (319)
102 PF10146 zf-C4H2: Zinc finger- 60.5 1.2E+02 0.0027 26.9 11.3 48 83-130 39-86 (230)
103 cd04779 HTH_MerR-like_sg4 Heli 59.2 48 0.001 26.8 6.8 48 87-136 78-125 (134)
104 PF10473 CENP-F_leu_zip: Leuci 58.9 1.1E+02 0.0023 25.6 13.0 92 39-130 19-113 (140)
105 TIGR02492 flgK_ends flagellar 58.7 86 0.0019 28.1 8.9 71 39-133 136-210 (322)
106 PF12072 DUF3552: Domain of un 58.6 1.1E+02 0.0024 25.8 13.1 7 46-52 29-35 (201)
107 PF05615 THOC7: Tho complex su 58.1 45 0.00098 26.2 6.4 63 39-112 48-110 (139)
108 PRK07739 flgK flagellar hook-a 57.4 75 0.0016 30.5 8.8 80 39-139 148-228 (507)
109 PF06305 DUF1049: Protein of u 57.3 13 0.00027 25.6 2.8 17 41-57 45-61 (68)
110 PRK12704 phosphodiesterase; Pr 56.9 2E+02 0.0044 28.2 15.7 14 44-57 31-44 (520)
111 PF10267 Tmemb_cc2: Predicted 56.8 1.9E+02 0.0041 27.9 12.9 100 41-149 223-327 (395)
112 PF03194 LUC7: LUC7 N_terminus 56.2 1.5E+02 0.0032 26.5 9.9 84 39-128 85-170 (254)
113 TIGR02231 conserved hypothetic 56.1 1.1E+02 0.0023 29.0 9.5 40 80-119 128-167 (525)
114 KOG0837 Transcriptional activa 55.5 39 0.00086 31.6 6.4 29 85-113 222-250 (279)
115 KOG2751 Beclin-like protein [S 55.4 91 0.002 30.9 9.1 112 78-200 185-308 (447)
116 TIGR01837 PHA_granule_1 poly(h 55.4 1E+02 0.0023 24.4 8.9 40 79-118 70-117 (118)
117 PF12718 Tropomyosin_1: Tropom 54.5 1E+02 0.0023 25.1 8.1 17 42-58 12-28 (143)
118 TIGR03185 DNA_S_dndD DNA sulfu 54.3 1.8E+02 0.0039 28.5 11.0 19 40-58 394-412 (650)
119 COG3206 GumC Uncharacterized p 54.0 1.9E+02 0.004 26.9 11.0 57 70-130 333-392 (458)
120 PF14193 DUF4315: Domain of un 52.8 51 0.0011 25.4 5.7 32 92-123 3-34 (83)
121 KOG4673 Transcription factor T 52.7 1.6E+02 0.0034 31.6 10.7 69 39-111 404-488 (961)
122 PF07106 TBPIP: Tat binding pr 52.3 80 0.0017 25.5 7.1 22 111-132 116-137 (169)
123 KOG0161 Myosin class II heavy 52.1 2.4E+02 0.0052 32.6 12.6 75 39-113 910-987 (1930)
124 PF04012 PspA_IM30: PspA/IM30 52.1 1.4E+02 0.003 24.9 11.9 77 39-116 53-131 (221)
125 KOG1962 B-cell receptor-associ 51.9 1.8E+02 0.0039 26.2 12.2 37 84-120 152-188 (216)
126 TIGR01554 major_cap_HK97 phage 51.6 1E+02 0.0023 27.7 8.4 19 40-58 2-20 (378)
127 KOG0995 Centromere-associated 51.1 2.9E+02 0.0064 28.4 16.1 125 10-134 191-352 (581)
128 PF13600 DUF4140: N-terminal d 51.1 38 0.00082 25.2 4.7 36 79-114 66-101 (104)
129 PRK05683 flgK flagellar hook-a 51.0 99 0.0021 31.3 8.9 71 39-133 136-209 (676)
130 COG4913 Uncharacterized protei 51.0 1.3E+02 0.0028 32.5 9.9 55 39-103 778-832 (1104)
131 PLN02320 seryl-tRNA synthetase 50.7 1.1E+02 0.0024 30.3 9.0 6 187-192 221-226 (502)
132 PF10211 Ax_dynein_light: Axon 50.7 1.4E+02 0.003 25.4 8.5 47 87-133 131-178 (189)
133 PF04420 CHD5: CHD5-like prote 50.6 77 0.0017 26.1 6.8 60 40-112 36-95 (161)
134 TIGR01554 major_cap_HK97 phage 50.3 63 0.0014 29.1 6.8 31 90-120 27-57 (378)
135 PF05667 DUF812: Protein of un 49.8 2.3E+02 0.0049 28.6 11.0 54 79-132 415-475 (594)
136 TIGR01005 eps_transp_fam exopo 49.8 2.7E+02 0.0058 27.5 13.1 21 39-59 290-310 (754)
137 PRK13922 rod shape-determining 49.6 59 0.0013 28.0 6.3 47 80-130 66-112 (276)
138 PF08172 CASP_C: CASP C termin 49.3 83 0.0018 28.1 7.3 58 66-130 76-133 (248)
139 PRK12705 hypothetical protein; 49.2 2.8E+02 0.0061 27.6 14.8 11 47-57 40-50 (508)
140 COG3879 Uncharacterized protei 49.1 50 0.0011 30.2 5.9 17 188-205 197-213 (247)
141 PF11932 DUF3450: Protein of u 48.6 1.4E+02 0.0031 25.6 8.4 25 178-203 189-217 (251)
142 PRK07191 flgK flagellar hook-a 48.4 1.2E+02 0.0025 28.7 8.4 71 39-133 136-209 (456)
143 PRK15396 murein lipoprotein; P 48.0 1.2E+02 0.0027 23.2 7.7 61 14-75 5-74 (78)
144 PRK06665 flgK flagellar hook-a 47.3 1.3E+02 0.0028 29.9 8.9 71 39-133 148-221 (627)
145 KOG4001 Axonemal dynein light 47.1 1.1E+02 0.0023 28.4 7.7 42 85-126 187-228 (259)
146 PF10805 DUF2730: Protein of u 47.0 1.4E+02 0.0029 23.3 8.7 29 90-118 65-93 (106)
147 PF06936 Selenoprotein_S: Sele 46.9 1.8E+02 0.004 25.3 8.8 43 54-97 59-101 (190)
148 PRK11519 tyrosine kinase; Prov 46.6 2.8E+02 0.006 27.7 11.1 22 39-60 276-297 (719)
149 PF10186 Atg14: UV radiation r 46.5 1.7E+02 0.0038 24.4 12.3 20 90-109 70-89 (302)
150 PF07439 DUF1515: Protein of u 46.5 1.7E+02 0.0037 24.3 9.1 70 40-126 4-78 (112)
151 PRK14127 cell division protein 46.4 34 0.00074 27.6 4.0 29 87-115 41-69 (109)
152 PRK07521 flgK flagellar hook-a 46.1 1.4E+02 0.003 28.5 8.6 71 39-133 131-204 (483)
153 PF09712 PHA_synth_III_E: Poly 45.9 1.9E+02 0.0041 26.3 9.1 42 76-117 243-292 (293)
154 PF03961 DUF342: Protein of un 45.3 2.1E+02 0.0045 26.8 9.5 35 80-114 372-406 (451)
155 KOG2010 Double stranded RNA bi 45.3 73 0.0016 31.1 6.6 48 83-130 140-187 (405)
156 KOG4010 Coiled-coil protein TP 45.2 62 0.0014 29.2 5.8 37 83-119 44-80 (208)
157 TIGR00606 rad50 rad50. This fa 45.2 2.9E+02 0.0063 29.6 11.5 36 77-112 882-917 (1311)
158 PF09730 BicD: Microtubule-ass 45.1 3.8E+02 0.0083 28.0 12.5 82 39-124 354-439 (717)
159 PRK08147 flgK flagellar hook-a 45.1 1.5E+02 0.0032 28.6 8.7 71 39-133 137-212 (547)
160 PF09006 Surfac_D-trimer: Lung 45.0 55 0.0012 23.4 4.4 38 99-136 1-38 (46)
161 PF02841 GBP_C: Guanylate-bind 44.7 2.2E+02 0.0048 25.1 10.0 61 44-104 197-257 (297)
162 KOG0977 Nuclear envelope prote 44.6 2.4E+02 0.0053 28.5 10.3 23 39-61 108-130 (546)
163 KOG0996 Structural maintenance 44.5 2.2E+02 0.0048 31.8 10.6 67 39-107 860-931 (1293)
164 PTZ00332 paraflagellar rod pro 44.2 93 0.002 31.8 7.4 49 91-146 325-374 (589)
165 PF10212 TTKRSYEDQ: Predicted 44.1 2.2E+02 0.0048 28.7 10.0 71 39-116 443-513 (518)
166 PF06698 DUF1192: Protein of u 43.9 64 0.0014 23.7 4.8 27 36-62 20-46 (59)
167 PF14193 DUF4315: Domain of un 43.8 69 0.0015 24.7 5.2 34 86-119 4-37 (83)
168 TIGR01010 BexC_CtrB_KpsE polys 43.6 2.4E+02 0.0052 25.2 10.4 22 39-60 179-200 (362)
169 PF04156 IncA: IncA protein; 43.1 1.8E+02 0.0038 23.5 15.4 50 44-97 102-151 (191)
170 KOG0993 Rab5 GTPase effector R 43.0 69 0.0015 32.2 6.3 36 86-121 151-186 (542)
171 PF10354 DUF2431: Domain of un 42.7 25 0.00054 29.1 2.8 39 22-60 8-53 (166)
172 PF14817 HAUS5: HAUS augmin-li 42.4 1E+02 0.0023 31.3 7.5 47 83-132 79-125 (632)
173 PF04012 PspA_IM30: PspA/IM30 41.6 2.1E+02 0.0045 23.8 9.3 61 40-108 15-76 (221)
174 PF11180 DUF2968: Protein of u 41.2 2.6E+02 0.0057 24.9 10.7 50 71-120 135-184 (192)
175 COG4026 Uncharacterized protei 40.9 93 0.002 29.1 6.4 38 93-130 152-189 (290)
176 PRK04863 mukB cell division pr 40.8 5.7E+02 0.012 28.7 16.5 16 146-161 415-430 (1486)
177 PRK15422 septal ring assembly 40.7 1.8E+02 0.0039 22.8 8.2 42 87-128 8-53 (79)
178 PF02996 Prefoldin: Prefoldin 40.6 1.4E+02 0.0029 22.3 6.3 40 83-122 77-116 (120)
179 PRK13169 DNA replication intia 40.6 1.3E+02 0.0028 24.3 6.5 44 87-130 12-55 (110)
180 PRK14872 rod shape-determining 40.4 2.5E+02 0.0054 26.6 9.2 21 14-34 10-31 (337)
181 smart00338 BRLZ basic region l 40.3 1.2E+02 0.0027 20.9 6.8 33 89-121 25-57 (65)
182 PF12718 Tropomyosin_1: Tropom 40.0 2.1E+02 0.0045 23.4 11.4 44 87-130 77-131 (143)
183 PF06005 DUF904: Protein of un 40.0 1.6E+02 0.0034 22.0 8.6 33 86-118 7-39 (72)
184 PF15070 GOLGA2L5: Putative go 39.7 4.2E+02 0.0091 26.9 12.6 88 42-131 48-149 (617)
185 PRK13182 racA polar chromosome 39.6 2.4E+02 0.0052 24.1 8.8 78 44-122 50-143 (175)
186 KOG0999 Microtubule-associated 39.5 4.6E+02 0.0099 27.7 11.5 57 39-95 102-161 (772)
187 TIGR02894 DNA_bind_RsfA transc 39.4 2.2E+02 0.0047 24.8 8.0 53 78-133 99-151 (161)
188 PF14389 Lzipper-MIP1: Leucine 39.1 1.7E+02 0.0037 22.2 6.7 30 84-113 55-84 (88)
189 PF11382 DUF3186: Protein of u 38.9 87 0.0019 28.3 5.9 38 95-132 37-74 (308)
190 KOG1029 Endocytic adaptor prot 38.6 5.7E+02 0.012 28.1 13.6 57 75-133 361-428 (1118)
191 KOG1937 Uncharacterized conser 38.6 2.5E+02 0.0053 28.5 9.2 73 50-130 299-371 (521)
192 KOG0161 Myosin class II heavy 38.3 4.5E+02 0.0099 30.5 12.1 52 77-128 1485-1536(1930)
193 PF06305 DUF1049: Protein of u 38.2 47 0.001 22.7 3.2 19 39-57 50-68 (68)
194 PF10393 Matrilin_ccoil: Trime 38.2 89 0.0019 22.1 4.6 26 95-120 21-46 (47)
195 TIGR01834 PHA_synth_III_E poly 38.0 2E+02 0.0044 27.1 8.3 46 78-123 262-315 (320)
196 PF09403 FadA: Adhesion protei 37.5 2.3E+02 0.0051 23.3 8.9 54 39-113 22-75 (126)
197 PF10174 Cast: RIM-binding pro 37.3 5.1E+02 0.011 27.2 12.1 47 80-126 440-494 (775)
198 PF10174 Cast: RIM-binding pro 37.0 4.2E+02 0.0092 27.8 11.0 46 87-132 118-163 (775)
199 KOG0250 DNA repair protein RAD 36.9 6E+02 0.013 28.0 12.3 49 82-130 371-420 (1074)
200 PF12548 DUF3740: Sulfatase pr 36.8 62 0.0013 27.1 4.3 32 72-104 96-127 (145)
201 TIGR01000 bacteriocin_acc bact 36.7 3.5E+02 0.0077 25.2 10.7 23 39-61 99-121 (457)
202 PRK11281 hypothetical protein; 36.7 4.1E+02 0.0089 28.9 11.1 58 51-110 43-107 (1113)
203 KOG0837 Transcriptional activa 36.6 1.6E+02 0.0034 27.8 7.2 52 80-131 204-261 (279)
204 PF06210 DUF1003: Protein of u 36.5 1.6E+02 0.0034 23.5 6.4 28 96-123 79-106 (108)
205 PRK00888 ftsB cell division pr 36.4 1.3E+02 0.0028 23.5 5.8 21 38-58 28-48 (105)
206 PF13935 Ead_Ea22: Ead/Ea22-li 36.3 2.3E+02 0.005 22.8 7.7 30 67-98 57-89 (139)
207 PTZ00454 26S protease regulato 36.2 1E+02 0.0022 28.9 6.0 45 88-132 20-64 (398)
208 TIGR03752 conj_TIGR03752 integ 36.2 3E+02 0.0066 27.5 9.4 48 44-95 59-106 (472)
209 PRK10265 chaperone-modulator p 36.2 45 0.00097 25.6 3.1 36 62-108 61-96 (101)
210 PRK08871 flgK flagellar hook-a 36.0 2.3E+02 0.0049 28.5 8.7 71 39-133 139-209 (626)
211 PF11464 Rbsn: Rabenosyn Rab b 35.9 1.1E+02 0.0024 21.2 4.7 18 96-113 21-38 (42)
212 KOG3119 Basic region leucine z 35.7 1.4E+02 0.0031 26.7 6.6 28 86-113 218-245 (269)
213 PRK10929 putative mechanosensi 35.5 6.3E+02 0.014 27.7 13.6 64 37-103 102-200 (1109)
214 KOG0976 Rho/Rac1-interacting s 35.5 6.3E+02 0.014 27.9 12.0 88 38-127 35-129 (1265)
215 PRK05431 seryl-tRNA synthetase 35.4 2.5E+02 0.0055 26.5 8.5 44 79-122 45-91 (425)
216 PF09738 DUF2051: Double stran 35.0 1.7E+02 0.0038 27.1 7.2 28 83-110 105-132 (302)
217 PF09787 Golgin_A5: Golgin sub 34.9 1.6E+02 0.0034 28.4 7.2 40 83-122 274-313 (511)
218 PTZ00186 heat shock 70 kDa pre 34.8 4.9E+02 0.011 26.2 11.6 16 84-99 580-595 (657)
219 PF14817 HAUS5: HAUS augmin-li 34.7 5.2E+02 0.011 26.5 12.0 21 113-133 398-418 (632)
220 PF12711 Kinesin-relat_1: Kine 34.5 1.5E+02 0.0032 23.3 5.7 21 88-108 22-42 (86)
221 PF00038 Filament: Intermediat 34.1 3.1E+02 0.0067 23.7 13.7 22 39-60 20-41 (312)
222 PRK12714 flgK flagellar hook-a 34.0 2.9E+02 0.0063 27.5 9.0 71 39-133 136-207 (624)
223 PRK11239 hypothetical protein; 33.8 63 0.0014 29.2 4.1 23 88-110 188-210 (215)
224 PRK03947 prefoldin subunit alp 33.6 1.6E+02 0.0034 23.1 5.9 33 86-118 104-136 (140)
225 PF08581 Tup_N: Tup N-terminal 33.6 2.2E+02 0.0047 21.7 6.7 47 76-122 18-68 (79)
226 PRK13729 conjugal transfer pil 33.4 1.9E+02 0.0041 28.9 7.6 40 87-126 80-119 (475)
227 TIGR01834 PHA_synth_III_E poly 33.1 58 0.0013 30.7 3.9 28 103-130 288-315 (320)
228 KOG3335 Predicted coiled-coil 32.2 1.1E+02 0.0024 27.1 5.3 28 82-109 105-132 (181)
229 PF11440 AGT: DNA alpha-glucos 32.0 27 0.00059 33.5 1.6 43 121-164 262-305 (355)
230 KOG2211 Predicted Golgi transp 31.9 6.6E+02 0.014 26.9 12.4 90 14-110 48-141 (797)
231 PF06156 DUF972: Protein of un 31.9 2.6E+02 0.0057 22.2 7.1 44 87-130 12-55 (107)
232 PF07106 TBPIP: Tat binding pr 31.9 2.4E+02 0.0052 22.8 6.9 23 88-110 114-136 (169)
233 PF10458 Val_tRNA-synt_C: Valy 31.6 1.7E+02 0.0036 20.7 5.2 26 83-108 4-29 (66)
234 PF08657 DASH_Spc34: DASH comp 31.5 1.3E+02 0.0027 27.3 5.7 38 96-133 179-216 (259)
235 PF08172 CASP_C: CASP C termin 31.5 2E+02 0.0044 25.8 6.9 29 102-130 84-112 (248)
236 PRK09973 putative outer membra 31.4 2.6E+02 0.0055 22.0 6.6 33 39-71 33-69 (85)
237 KOG0996 Structural maintenance 31.4 8.1E+02 0.018 27.7 14.9 99 35-133 504-609 (1293)
238 PF11629 Mst1_SARAH: C termina 31.3 73 0.0016 23.0 3.3 24 37-60 8-35 (49)
239 PF03234 CDC37_N: Cdc37 N term 31.2 2.7E+02 0.0059 24.0 7.4 62 72-133 28-90 (177)
240 KOG2391 Vacuolar sorting prote 31.1 2E+02 0.0043 28.0 7.1 16 52-67 215-230 (365)
241 PRK08471 flgK flagellar hook-a 31.0 3.2E+02 0.0069 27.3 8.7 74 39-133 141-216 (613)
242 PRK11546 zraP zinc resistance 30.7 65 0.0014 27.2 3.5 21 91-111 90-110 (143)
243 PF02050 FliJ: Flagellar FliJ 30.5 1.9E+02 0.0042 20.2 12.9 80 39-118 14-94 (123)
244 PLN02943 aminoacyl-tRNA ligase 30.4 1.3E+02 0.0028 31.4 6.3 50 81-130 887-940 (958)
245 PF04678 DUF607: Protein of un 30.4 1.2E+02 0.0025 25.4 5.0 33 39-71 59-92 (180)
246 PF12017 Tnp_P_element: Transp 30.4 1.8E+02 0.0039 26.0 6.3 30 80-109 15-44 (236)
247 PRK13922 rod shape-determining 30.3 3.6E+02 0.0078 23.3 8.4 50 81-130 60-109 (276)
248 COG5509 Uncharacterized small 30.3 95 0.0021 23.7 3.9 24 87-110 29-52 (65)
249 PF06810 Phage_GP20: Phage min 30.2 3.2E+02 0.007 22.7 8.4 40 82-121 26-68 (155)
250 TIGR02449 conserved hypothetic 30.2 2.1E+02 0.0046 21.4 5.7 22 77-98 29-50 (65)
251 PF10183 ESSS: ESSS subunit of 30.1 1.2E+02 0.0027 23.6 4.8 41 10-50 55-102 (105)
252 PF06698 DUF1192: Protein of u 30.0 1.4E+02 0.0031 21.9 4.8 21 88-108 26-46 (59)
253 PF07412 Geminin: Geminin; In 29.8 95 0.0021 27.7 4.5 42 86-131 128-169 (200)
254 smart00787 Spc7 Spc7 kinetocho 29.7 4.5E+02 0.0098 24.2 11.7 24 39-62 174-197 (312)
255 PRK09039 hypothetical protein; 29.6 4.5E+02 0.0099 24.2 11.8 29 86-114 140-168 (343)
256 KOG0963 Transcription factor/C 29.4 6.7E+02 0.015 26.1 11.7 82 44-130 249-336 (629)
257 KOG0243 Kinesin-like protein [ 29.3 4.2E+02 0.009 29.1 9.7 58 51-112 411-470 (1041)
258 COG0172 SerS Seryl-tRNA synthe 29.2 4.1E+02 0.0089 26.1 9.0 21 100-120 71-91 (429)
259 PRK13729 conjugal transfer pil 29.1 2.5E+02 0.0054 28.0 7.6 22 85-106 99-120 (475)
260 KOG4674 Uncharacterized conser 29.0 4.3E+02 0.0094 30.6 10.1 71 51-121 1057-1137(1822)
261 PF13600 DUF4140: N-terminal d 28.8 1.7E+02 0.0036 21.7 5.1 26 90-115 70-95 (104)
262 PF13805 Pil1: Eisosome compon 28.8 4.8E+02 0.01 24.2 16.6 99 10-112 71-180 (271)
263 PF06216 RTBV_P46: Rice tungro 28.7 1.4E+02 0.0031 28.5 5.7 43 76-118 71-113 (389)
264 PF13851 GAS: Growth-arrest sp 28.3 3.8E+02 0.0083 23.0 12.3 16 44-59 27-42 (201)
265 PF13758 Prefoldin_3: Prefoldi 28.3 1.2E+02 0.0025 24.5 4.4 58 76-133 5-76 (99)
266 PF13514 AAA_27: AAA domain 28.2 7.1E+02 0.015 26.2 11.0 89 41-129 407-517 (1111)
267 TIGR02971 heterocyst_DevB ABC 28.1 4E+02 0.0086 23.1 10.0 32 88-119 88-119 (327)
268 PF07160 DUF1395: Protein of u 28.0 4.3E+02 0.0094 23.5 8.3 41 90-130 22-62 (243)
269 TIGR01069 mutS2 MutS2 family p 27.8 6.9E+02 0.015 25.8 11.2 10 21-30 481-490 (771)
270 PF12128 DUF3584: Protein of u 27.4 7.9E+02 0.017 26.3 15.0 67 46-112 322-388 (1201)
271 PF07047 OPA3: Optic atrophy 3 27.3 87 0.0019 25.2 3.6 23 88-110 110-132 (134)
272 TIGR00998 8a0101 efflux pump m 27.3 4E+02 0.0088 22.9 9.7 18 40-57 76-93 (334)
273 PRK14127 cell division protein 27.2 1.8E+02 0.0039 23.5 5.3 32 90-121 37-68 (109)
274 TIGR01010 BexC_CtrB_KpsE polys 26.7 4.6E+02 0.01 23.4 10.2 72 39-128 216-295 (362)
275 PF02388 FemAB: FemAB family; 26.7 3E+02 0.0066 25.6 7.4 21 85-105 244-264 (406)
276 PF11740 KfrA_N: Plasmid repli 26.7 2.3E+02 0.005 21.1 5.6 21 99-119 97-117 (120)
277 COG3937 Uncharacterized conser 26.7 3.7E+02 0.0079 22.2 10.4 32 88-119 66-105 (108)
278 PF04380 BMFP: Membrane fusoge 26.6 2.6E+02 0.0057 20.7 5.8 29 96-124 49-77 (79)
279 PRK07417 arogenate dehydrogena 26.6 1.8E+02 0.004 24.9 5.6 57 70-126 215-277 (279)
280 PF13851 GAS: Growth-arrest sp 26.6 4.1E+02 0.009 22.8 11.8 39 39-77 29-67 (201)
281 COG5185 HEC1 Protein involved 26.4 7.1E+02 0.015 25.8 10.2 94 39-133 332-429 (622)
282 PF11471 Sugarporin_N: Maltopo 26.3 2.4E+02 0.0051 20.5 5.3 44 16-59 8-54 (60)
283 PF07407 Seadorna_VP6: Seadorn 26.2 2.1E+02 0.0045 28.2 6.4 30 84-113 33-62 (420)
284 cd00584 Prefoldin_alpha Prefol 26.2 2.7E+02 0.006 21.3 6.0 28 85-112 8-35 (129)
285 PF03980 Nnf1: Nnf1 ; InterPr 26.2 2.9E+02 0.0063 20.9 7.9 71 39-122 29-105 (109)
286 PF04350 PilO: Pilus assembly 26.0 53 0.0011 24.9 2.0 11 91-101 7-17 (144)
287 KOG0971 Microtubule-associated 26.0 4.6E+02 0.01 29.1 9.3 11 186-196 572-582 (1243)
288 PRK06945 flgK flagellar hook-a 25.9 7E+02 0.015 25.2 11.1 80 30-133 122-211 (651)
289 PF06248 Zw10: Centromere/kine 25.7 6.2E+02 0.013 24.5 12.2 30 102-131 74-103 (593)
290 PF15070 GOLGA2L5: Putative go 25.6 2.4E+02 0.0052 28.5 7.0 46 62-108 23-68 (617)
291 PF04420 CHD5: CHD5-like prote 25.4 1E+02 0.0022 25.4 3.7 45 84-128 41-97 (161)
292 PF10046 BLOC1_2: Biogenesis o 25.4 3.1E+02 0.0067 20.9 7.1 36 95-130 57-92 (99)
293 PHA02557 22 prohead core prote 25.3 1.4E+02 0.003 28.0 4.9 36 99-134 143-178 (271)
294 cd00890 Prefoldin Prefoldin is 25.1 2.9E+02 0.0064 20.5 6.0 28 85-112 8-35 (129)
295 TIGR03007 pepcterm_ChnLen poly 25.0 5.6E+02 0.012 23.8 11.4 22 40-61 250-271 (498)
296 PF05644 Miff: Mitochondrial a 25.0 2E+02 0.0044 26.0 5.8 33 98-130 196-228 (246)
297 PF11461 RILP: Rab interacting 25.0 1.6E+02 0.0035 21.8 4.3 26 82-107 9-34 (60)
298 PF07795 DUF1635: Protein of u 24.8 3E+02 0.0064 24.9 6.7 35 103-137 29-63 (214)
299 cd04766 HTH_HspR Helix-Turn-He 24.7 1E+02 0.0022 22.6 3.2 19 88-106 70-88 (91)
300 PF04102 SlyX: SlyX; InterPro 24.7 2.7E+02 0.0059 20.0 6.1 27 96-122 17-43 (69)
301 PRK12726 flagellar biosynthesi 24.6 1.9E+02 0.004 28.3 5.8 72 66-143 88-164 (407)
302 PF03528 Rabaptin: Rabaptin; 24.5 2E+02 0.0044 23.3 5.1 57 74-131 40-96 (106)
303 PRK05771 V-type ATP synthase s 24.5 6.8E+02 0.015 24.6 9.7 33 87-119 90-122 (646)
304 PLN02678 seryl-tRNA synthetase 24.5 3.1E+02 0.0067 26.7 7.2 43 80-122 51-96 (448)
305 PF02388 FemAB: FemAB family; 24.4 5.3E+02 0.012 24.0 8.5 21 39-59 244-264 (406)
306 KOG0933 Structural maintenance 24.3 1E+03 0.022 26.6 11.8 42 83-124 829-870 (1174)
307 PF09970 DUF2204: Nucleotidyl 24.1 1.2E+02 0.0025 25.5 3.9 49 57-107 131-180 (181)
308 PF10168 Nup88: Nuclear pore c 24.0 7.4E+02 0.016 25.6 10.1 16 97-112 639-654 (717)
309 PF05988 DUF899: Bacterial pro 23.9 1.1E+02 0.0025 27.3 4.0 31 78-112 9-39 (211)
310 PRK03947 prefoldin subunit alp 23.9 2.9E+02 0.0063 21.6 5.9 26 87-112 17-42 (140)
311 COG3096 MukB Uncharacterized p 23.8 1E+03 0.023 26.5 13.6 76 50-136 835-918 (1480)
312 COG1842 PspA Phage shock prote 23.6 4.4E+02 0.0095 23.4 7.5 49 85-133 26-74 (225)
313 PF15456 Uds1: Up-regulated Du 23.6 4.1E+02 0.0088 21.7 7.7 74 39-120 31-104 (124)
314 PF09738 DUF2051: Double stran 23.6 6E+02 0.013 23.6 9.2 16 38-53 78-93 (302)
315 PF12325 TMF_TATA_bd: TATA ele 23.5 4E+02 0.0087 21.6 11.6 32 39-73 25-56 (120)
316 PF09969 DUF2203: Uncharacteri 23.5 3.9E+02 0.0085 21.5 7.5 21 116-136 52-72 (120)
317 PTZ00419 valyl-tRNA synthetase 23.5 1.4E+02 0.0031 31.0 5.1 50 81-130 927-980 (995)
318 PRK00106 hypothetical protein; 23.4 7.7E+02 0.017 24.8 16.6 17 16-32 9-25 (535)
319 PF10359 Fmp27_WPPW: RNA pol I 23.4 3.9E+02 0.0085 25.6 7.6 62 39-116 165-226 (475)
320 PRK10787 DNA-binding ATP-depen 23.3 6.2E+02 0.013 26.2 9.4 74 39-123 192-278 (784)
321 PF10482 CtIP_N: Tumour-suppre 23.3 4.5E+02 0.0098 22.1 7.5 57 37-97 5-63 (120)
322 PRK00409 recombination and DNA 23.3 8.4E+02 0.018 25.2 11.7 10 21-30 486-495 (782)
323 PRK05729 valS valyl-tRNA synth 23.3 2.2E+02 0.0047 29.2 6.2 50 81-130 809-862 (874)
324 PF05377 FlaC_arch: Flagella a 23.2 3.1E+02 0.0066 20.1 7.1 42 87-128 4-45 (55)
325 PF07246 Phlebovirus_NSM: Phle 23.2 4.4E+02 0.0096 24.6 7.7 7 96-102 229-235 (264)
326 PF08657 DASH_Spc34: DASH comp 23.2 1.7E+02 0.0038 26.4 5.0 44 68-113 167-210 (259)
327 COG5019 CDC3 Septin family pro 23.1 4.5E+02 0.0099 25.6 8.0 38 80-117 325-362 (373)
328 PTZ00419 valyl-tRNA synthetase 23.0 4.1E+02 0.0088 27.8 8.2 58 39-110 931-991 (995)
329 PF04375 HemX: HemX; InterPro 23.0 6.1E+02 0.013 23.5 12.4 23 39-61 55-77 (372)
330 PF10168 Nup88: Nuclear pore c 22.9 4.2E+02 0.0092 27.2 8.1 30 79-108 635-664 (717)
331 PF15188 CCDC-167: Coiled-coil 22.8 1.7E+02 0.0036 23.0 4.2 25 89-113 4-28 (85)
332 KOG3850 Predicted membrane pro 22.7 7.9E+02 0.017 24.7 13.7 94 42-146 272-374 (455)
333 PF08317 Spc7: Spc7 kinetochor 22.7 5.8E+02 0.012 23.1 13.2 12 99-110 211-222 (325)
334 TIGR02680 conserved hypothetic 22.6 1E+03 0.023 26.0 15.0 6 200-205 1037-1042(1353)
335 PF11336 DUF3138: Protein of u 22.5 1.1E+02 0.0024 30.9 3.9 25 86-110 28-52 (514)
336 PRK11239 hypothetical protein; 22.5 1.5E+02 0.0033 26.8 4.5 14 46-59 130-143 (215)
337 TIGR02894 DNA_bind_RsfA transc 22.3 5.3E+02 0.011 22.5 8.1 34 87-120 101-134 (161)
338 PF13094 CENP-Q: CENP-Q, a CEN 22.3 3.2E+02 0.0069 22.0 5.9 20 103-122 61-80 (160)
339 PF04417 DUF501: Protein of un 22.3 2.1E+02 0.0046 23.5 5.0 42 87-128 35-82 (139)
340 PF07716 bZIP_2: Basic region 22.3 2.6E+02 0.0056 18.9 5.3 32 79-110 21-52 (54)
341 KOG4376 Uncharacterized conser 22.2 30 0.00064 30.2 0.0 10 215-224 52-61 (161)
342 PF14335 DUF4391: Domain of un 22.2 2.2E+02 0.0047 24.3 5.2 32 39-70 177-208 (221)
343 PF05103 DivIVA: DivIVA protei 22.1 42 0.00092 25.3 0.8 41 87-127 29-69 (131)
344 cd00890 Prefoldin Prefoldin is 22.0 3.4E+02 0.0074 20.2 6.2 37 84-120 88-124 (129)
345 TIGR00293 prefoldin, archaeal 21.9 3.5E+02 0.0076 20.6 5.9 36 82-117 5-40 (126)
346 PF15546 DUF4653: Domain of un 21.9 5.4E+02 0.012 23.8 7.8 39 96-134 192-231 (239)
347 PF00038 Filament: Intermediat 21.9 5.2E+02 0.011 22.3 13.0 23 84-106 256-278 (312)
348 PF02994 Transposase_22: L1 tr 21.8 3.4E+02 0.0074 25.3 6.8 46 88-133 142-191 (370)
349 COG3771 Predicted membrane pro 21.7 1E+02 0.0023 25.0 3.0 49 11-59 40-91 (97)
350 PF10925 DUF2680: Protein of u 21.7 3.2E+02 0.0069 19.7 6.2 30 90-119 7-36 (59)
351 PF06295 DUF1043: Protein of u 21.6 3.4E+02 0.0073 21.7 5.9 52 16-77 4-55 (128)
352 PF05278 PEARLI-4: Arabidopsis 21.6 6.7E+02 0.014 23.4 15.7 50 81-130 205-254 (269)
353 PHA02109 hypothetical protein 21.6 2.6E+02 0.0056 25.5 5.7 55 66-120 159-223 (233)
354 PF10498 IFT57: Intra-flagella 21.4 4E+02 0.0087 25.2 7.2 65 55-130 242-306 (359)
355 PF00769 ERM: Ezrin/radixin/mo 21.3 5.7E+02 0.012 22.5 11.0 87 40-130 8-108 (246)
356 PF06156 DUF972: Protein of un 21.3 3.7E+02 0.008 21.4 6.0 39 85-123 3-41 (107)
357 COG0419 SbcC ATPase involved i 21.2 9E+02 0.02 24.8 14.5 74 39-112 331-411 (908)
358 TIGR00414 serS seryl-tRNA synt 21.2 7.1E+02 0.015 23.6 10.2 43 80-122 48-94 (418)
359 TIGR03007 pepcterm_ChnLen poly 21.2 6.7E+02 0.014 23.2 12.1 14 46-59 277-290 (498)
360 COG3132 Uncharacterized protei 21.1 1.2E+02 0.0027 27.4 3.6 33 46-78 128-169 (215)
361 PF04728 LPP: Lipoprotein leuc 21.1 3.1E+02 0.0068 20.1 5.1 24 87-110 14-37 (56)
362 PF08286 Spc24: Spc24 subunit 21.0 32 0.00069 26.8 -0.0 39 84-122 7-45 (118)
363 PF07798 DUF1640: Protein of u 20.9 4.8E+02 0.01 21.5 10.1 7 87-93 84-90 (177)
364 PF05384 DegS: Sensor protein 20.8 5.3E+02 0.011 21.9 7.3 43 88-130 89-131 (159)
365 PF07111 HCR: Alpha helical co 20.7 1E+03 0.022 25.4 10.4 37 77-113 236-272 (739)
366 PF10805 DUF2730: Protein of u 20.7 4.1E+02 0.0089 20.6 7.9 8 91-98 50-57 (106)
367 PF09311 Rab5-bind: Rabaptin-l 20.6 49 0.0011 27.6 1.0 63 68-130 7-76 (181)
368 TIGR02449 conserved hypothetic 20.6 3.7E+02 0.008 20.1 8.0 33 82-114 20-52 (65)
369 TIGR02209 ftsL_broad cell divi 20.5 3.2E+02 0.0069 19.3 6.5 27 87-113 28-54 (85)
370 COG2960 Uncharacterized protei 20.5 2.3E+02 0.0049 23.3 4.7 24 96-119 65-88 (103)
371 TIGR01730 RND_mfp RND family e 20.4 5.1E+02 0.011 21.6 9.3 21 40-60 60-80 (322)
372 PF05565 Sipho_Gp157: Siphovir 20.4 4.9E+02 0.011 21.4 9.1 41 68-108 46-86 (162)
373 PRK10929 putative mechanosensi 20.3 7.7E+02 0.017 27.0 9.7 54 51-108 30-90 (1109)
374 KOG0977 Nuclear envelope prote 20.2 3.3E+02 0.0071 27.7 6.7 26 84-109 107-132 (546)
375 PF08606 Prp19: Prp19/Pso4-lik 20.1 4.1E+02 0.0088 20.4 7.2 45 87-131 12-67 (70)
376 PF11336 DUF3138: Protein of u 20.1 1.8E+02 0.004 29.3 4.9 86 22-119 5-105 (514)
377 KOG4571 Activating transcripti 20.0 4.1E+02 0.009 25.2 6.9 40 77-116 242-281 (294)
No 1
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.31 E-value=0.81 Score=39.21 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 79 NAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
+.|..|+..|.++|..+..|+..|+...+.++..+...+++.
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el 86 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQEL 86 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998888887777775554443333
No 2
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=95.21 E-value=0.24 Score=40.70 Aligned_cols=87 Identities=25% Similarity=0.441 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 027350 18 LYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATE 97 (224)
Q Consensus 18 sYlGlSFalfla~lp~~~~~S~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~e 97 (224)
.|| .+|+|||+..-.- .-.|..++...++.++.+++.=....+++.++ =..+.+++..+|..+.+
T Consensus 104 ~YI-sGf~LfL~l~I~r----~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----------~~~~~~~~~~ei~~lk~ 168 (192)
T PF05529_consen 104 MYI-SGFALFLSLVIRR----VHSLIKELIKLEEKLEALKKQAESASEAAEKL----------LKEENKKLSEEIEKLKK 168 (192)
T ss_pred HHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhhhhHHHHHHHHH
Confidence 366 5677777643211 45677888888888888887666666665555 12344555566666666
Q ss_pred HHHHHHHhHHHHHHHHHHhHHH
Q 027350 98 EMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 98 Ei~~LR~kl~E~e~~v~~lErE 119 (224)
|+......++.++..++.+++|
T Consensus 169 el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 169 ELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6555554455555445554443
No 3
>PRK11637 AmiB activator; Provisional
Probab=94.81 E-value=1.6 Score=40.09 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
+..|.+.+...+.+|.++++...
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544443
No 4
>PRK11637 AmiB activator; Provisional
Probab=92.70 E-value=2.2 Score=39.16 Aligned_cols=23 Identities=4% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
...+..+|...+.+|.++++...
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888877776554
No 5
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.53 E-value=7.5 Score=35.82 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHh---hhchhhH---HHHHHHHHHHHHHH-------HHHHHHHHHh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIF---ASHRNAW---QAEEKRLLQQIDAA-------TEEMASLRSK 105 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IF---AsheqsW---~~ErKrLr~qI~al-------~eEi~~LR~k 105 (224)
+..|..++...+..+.++.....+-.+...++.++- ...+..+ ..++++|..+|..| .+++..|..+
T Consensus 308 i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~ 387 (562)
T PHA02562 308 LKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDE 387 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Confidence 555556666666666655555555444445554442 2222222 23445566666655 4567777777
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcchh
Q 027350 106 IDELEREKLESDKRVQELEDMIGFMSRRGCEF 137 (224)
Q Consensus 106 l~E~e~~v~~lErEv~eReEm~~~lsr~~~~~ 137 (224)
|.++......++++...|+.+.+.|++.|+..
T Consensus 388 l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~ 419 (562)
T PHA02562 388 LDKIVKTKSELVKEKYHRGIVTDLLKDSGIKA 419 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 77777778889999999988888888877654
No 6
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.51 E-value=8.7 Score=37.27 Aligned_cols=79 Identities=15% Similarity=0.263 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 44 ARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
++|.....+|.++.+...++.+.=.++-.=.++++ .+=.++.++|-...+++..++++++++..++..|+.+..+|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e----~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLE----TEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555554444333222222 22334444444445555666666666666666666555444
Q ss_pred HHH
Q 027350 124 EDM 126 (224)
Q Consensus 124 eEm 126 (224)
...
T Consensus 114 r~~ 116 (420)
T COG4942 114 RRR 116 (420)
T ss_pred HHH
Confidence 433
No 7
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=90.65 E-value=1.3 Score=35.89 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=41.2
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
.-+..|-.||-.|..+|..|.-|.+.+..--.++..+|+-||.....
T Consensus 18 rdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999888876543
No 8
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=90.58 E-value=3.1 Score=35.15 Aligned_cols=79 Identities=25% Similarity=0.372 Sum_probs=55.1
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHhhhhh----hhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 35 SSQAKEELKARLR-AAEEQLKQMKSRRKE----DSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 35 ~~~S~r~L~~KL~-~AE~Ei~eLKkrR~E----DAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+..|+|+|-++|. .-.+||.+||.+|+- -.-+|-|+-.|--- .---.++..|.+||+.|..|++.++..+.-.
T Consensus 30 vsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk--~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 30 VSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQK--HELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377999998886 346789999998863 34567777776433 3345667778888888888877777766666
Q ss_pred HHHHHH
Q 027350 110 EREKLE 115 (224)
Q Consensus 110 e~~v~~ 115 (224)
+.+-++
T Consensus 108 k~k~e~ 113 (135)
T KOG4196|consen 108 KSKYEA 113 (135)
T ss_pred HHHHHH
Confidence 655433
No 9
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=89.77 E-value=0.98 Score=35.82 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
-||+|.+.+++|+..||++|.+++..-+.++.|..+
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999888888776543
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.50 E-value=9.9 Score=30.74 Aligned_cols=67 Identities=25% Similarity=0.366 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
.++-+++.....++.++..+=.+-..--...-..+.... ...+....+++.+...+..++..+.++.
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667776666554444444444444444433 3334444444444444444444444444
No 11
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.44 E-value=10 Score=30.89 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----H
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK----L 114 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v----~ 114 (224)
..+|..+|...+..|...|-.+.+ |..+|+.|+.....|..+-.++..+++|+++.| .
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~e------------------L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGE------------------LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999888877665 456677777777777777777777777777665 3
Q ss_pred HhHHHHHHHHHHHHHhhhh
Q 027350 115 ESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 115 ~lErEv~eReEm~~~lsr~ 133 (224)
.+|.+..-+.+|...+++.
T Consensus 73 ~le~eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 73 NLEDEKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666554
No 12
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.62 E-value=7.8 Score=37.60 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=62.0
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 54 KQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 54 ~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
++|+..+.+.++-|.++..+ ..++.+|..+|..++.+|..|+.+|-+.......+++....-+.-+.+|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~--------~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQ--------QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999998876 4678999999999999999999999999999888888888777777777
No 13
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.22 E-value=17 Score=31.74 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=25.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 74 FASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 74 FAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
+..+.+....+...|..+|..+..++..++.+++.++..+...++.....
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555555555555554444444444433
No 14
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.93 E-value=12 Score=29.65 Aligned_cols=61 Identities=11% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 43 KARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 43 ~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR 103 (224)
+..|..+..++.+++....+=-..-..+..-....+.+|..+++.|..+|..+..=+..|.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555554444333333445556688899999999888776666555444443
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.69 E-value=4.1 Score=41.15 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 47 RAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 47 ~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
..+|.||.+.|+.|.+-.-+-+|.+.--++.++ .-=--+++++..|+.|+..||..|-..+.++..+|.++
T Consensus 505 ~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 505 ASLEKQLQEERKARKEEEEKAARALAQAQATRQ---ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccchhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888887776543222333111112222 11113566666666777777766666666655555554
No 16
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=87.15 E-value=12 Score=31.63 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+..|..|+|.|..+|..|..+.+.|..++..+-..+.+++.
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee 124 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEE 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccch
Confidence 79999999999999999999999999777766655555543
No 17
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.42 E-value=11 Score=27.84 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 42 LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
|..+|..=..+|.+|..-=.-=++.+-+- ..-=|+||.++..+...|..|+.++++.+..+..|+...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~-----------~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKL-----------NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666677777764322222222222 222378999999999999999999998888887776654
No 18
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.06 E-value=20 Score=30.43 Aligned_cols=87 Identities=9% Similarity=0.291 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHH
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE----REKLE 115 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e----~~v~~ 115 (224)
..+-.++..+..++.+++....+ ..+++...=.+.+.+ .||..|..++..|..++..|..+|+.+. ..++.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~---l~~~i~~~~~~r~~~--~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEE---LEEKIEEAKKGREES--EEREELLEELEELKKELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33445556666666666554432 333444444455555 8999999999999999999999999766 34677
Q ss_pred hHHHHHHHHHHHHHhh
Q 027350 116 SDKRVQELEDMIGFMS 131 (224)
Q Consensus 116 lErEv~eReEm~~~ls 131 (224)
+.++...=.+.+....
T Consensus 140 ~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666666655555553
No 19
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.93 E-value=20 Score=30.42 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchhHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEV 139 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~~~ 139 (224)
...|..+|..|..++..|..++.+++...+.+++...++.....+.....+.+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk 176 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999988888877777777666665533
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.53 E-value=18 Score=31.46 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHH
Q 027350 41 ELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQ-------IDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 41 ~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~q-------I~al~eEi~~LR~kl~E~e~~v 113 (224)
.+..+|...+.|+.+|+..-.+ -.+.|......|.+. |..|.+|-..|+.+|+.++..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNN--------------IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558888999999988843222 124466555555554 4445555555555555555555
Q ss_pred HHhHH
Q 027350 114 LESDK 118 (224)
Q Consensus 114 ~~lEr 118 (224)
+.++.
T Consensus 156 ~~l~~ 160 (206)
T PRK10884 156 DAANL 160 (206)
T ss_pred HHHHH
Confidence 44443
No 21
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.22 E-value=23 Score=30.91 Aligned_cols=53 Identities=11% Similarity=0.275 Sum_probs=38.4
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 70 VVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 70 Vv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
+..+|.+..+........+..++..+..++..++.+++.++..+..++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~ 176 (423)
T TIGR01843 124 VPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEV 176 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777778888888888888888887777766655555433
No 22
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.87 E-value=9.6 Score=28.51 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
+-.|-++...+..++.+|+..|+.=+|.
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6666777777777778887777765554
No 23
>PRK01156 chromosome segregation protein; Provisional
Probab=84.44 E-value=21 Score=35.58 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 44 ARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
.++.....+|.+++..+.+-...++++..| ...-..+..+...|..+|..+..++..++.+++.++
T Consensus 650 ~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~ 715 (895)
T PRK01156 650 GKIDNYKKQIAEIDSIIPDLKEITSRINDI-EDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444555555454444444444444 222223344444444444444444444444433333
No 24
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.41 E-value=17 Score=37.29 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=17.5
Q ss_pred hhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 64 SKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRS 104 (224)
Q Consensus 64 AKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~ 104 (224)
-+++++.|+=+-.+-..-+++=..|.+.|..|.+++..+++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333
No 25
>PRK09039 hypothetical protein; Validated
Probab=84.15 E-value=34 Score=31.43 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
...+|..|..+|..||++|+.++..+.++|+.-.+-+.-|..|
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888777777665555555555
No 26
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.66 E-value=9.1 Score=34.74 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=17.0
Q ss_pred CCCCCC-CCCchhhhhhhhhhhHHhhhhhhhh
Q 027350 172 DGQIGN-FGFSSEFLASASKFWTERASSIWQD 202 (224)
Q Consensus 172 ~g~~~~-~gf~~~f~~sask~W~e~~~~~wQD 202 (224)
||++|. +||-=--+++..-.|.|=. ..|+-
T Consensus 147 dG~fGTINGlRLGrl~~~~V~W~EIN-AA~Gq 177 (314)
T PF04111_consen 147 DGPFGTINGLRLGRLPNVPVEWNEIN-AAWGQ 177 (314)
T ss_dssp ETTEEEETTEEE--BTTB---HHHHH-HHHHH
T ss_pred cCCeeeECCeeeccCCCCCCChHHHH-HHHHH
Confidence 355655 7776444566777999976 77864
No 27
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.30 E-value=36 Score=29.95 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
...|..++..|+.+-..|.+.|.+=-.+|.++..-.... ..|+..|-++|..+..+|..|......-+..+..+..
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~----~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ----EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999988888888877655544 5678889999999999888888777766655555554
Q ss_pred HH
Q 027350 119 RV 120 (224)
Q Consensus 119 Ev 120 (224)
++
T Consensus 111 el 112 (246)
T PF00769_consen 111 EL 112 (246)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=81.24 E-value=9.8 Score=35.58 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
+=|+|=|.+-.+|+.|+-.|-++-++++.+|.++|||++.-+.+|.
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677889999999999999999999999999998766654
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.81 E-value=35 Score=29.27 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
++-.-..+.-...+.+.+-|..|..+|.+.+.|++..|+.|...+..|+.|
T Consensus 159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~l 209 (237)
T PF00261_consen 159 SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566777788899999999999999999999999999888888877
No 30
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=80.70 E-value=12 Score=29.50 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 42 LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
...++...-.++--+=+.-+| .||.-+=.|.+..|...-++|..++..+.+|+..|+.+|+-..
T Consensus 13 v~~~ve~vA~eLh~~YssKHE-----~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 13 VEKAVEKVARELHALYSSKHE-----TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHhhHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 7899999999999999999999999999999999998876443
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.84 E-value=37 Score=30.58 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
..|+.++..+..+|..+|+++++++....+++.++
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444444333
No 32
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=79.82 E-value=3.9 Score=30.44 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 89 LQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
|.+.++....+..+|.||+.+++++.+||.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777788888889999999988888874
No 33
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.44 E-value=24 Score=34.94 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH----HhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVE----IFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~----IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~ 114 (224)
+|+|+-++...+.++..|.+-=..=.+.|++.-. |=--=.++-..+|..|.+++..|.+++..|...|.++..+.+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888877777776644444444554422 222223344457777777777777777777777777665543
No 34
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.08 E-value=13 Score=25.67 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~ 133 (224)
..-..++++|..+..++..|+.+.++++..++.|.. -.+.++++.|.
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~----~~~~ie~~AR~ 63 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKN----DPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHH
Confidence 344567777777777777777777777666655511 24455555554
No 35
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.11 E-value=24 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKE 62 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~E 62 (224)
...+..++.....++.++.+.|.+
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~e 92 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGE 92 (194)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 334444455555555555444443
No 36
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=77.04 E-value=64 Score=31.83 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 79 NAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
+.|..+...+..++..+..+...++..+.+++.+.+...+...++..++.
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~ 105 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMI 105 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888888888888888888888776554444444444443
No 37
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.88 E-value=22 Score=32.95 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=13.2
Q ss_pred hhhhhhHHHHHhhhchhhHHHHHHHHHH
Q 027350 63 DSKANARVVEIFASHRNAWQAEEKRLLQ 90 (224)
Q Consensus 63 DAKANeKVv~IFAsheqsW~~ErKrLr~ 90 (224)
|+.++.++..+++.....+..+-..+..
T Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 298 (457)
T TIGR01000 271 ASSQNSKLAQLKEQQLAKVKQEITDLNQ 298 (457)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666655444334333333333
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=76.87 E-value=75 Score=31.24 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=19.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
...+.+..+...|..++..+.++|..+...+++++..
T Consensus 238 ~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~ 274 (880)
T PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556655555555555555554444433
No 39
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=76.50 E-value=8.7 Score=33.88 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=28.3
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHH------------HHHHHHHhhhhcchhHHHHHHHHh
Q 027350 98 EMASLRSKIDELEREKLESDKRVQE------------LEDMIGFMSRRGCEFEVEQQQQQH 146 (224)
Q Consensus 98 Ei~~LR~kl~E~e~~v~~lErEv~e------------ReEm~~~lsr~~~~~~~~qq~~q~ 146 (224)
|++.|+++|++++..+..+++++.. |.|+++.| +|-+++.+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL-------~YK~~ql~~ 150 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLL-------DYKERQLRE 150 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHH-------HHHHHHHHh
Confidence 5666677777777776666666665 56777777 776666555
No 40
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.22 E-value=12 Score=25.93 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
....+-..|..+|..+..+...|..+++.++.--+.+|+.+.++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45566677777777777777777777777744444555544433
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=76.15 E-value=80 Score=31.34 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 027350 49 AEEQLKQM 56 (224)
Q Consensus 49 AE~Ei~eL 56 (224)
++..+.+|
T Consensus 182 ~~~~l~el 189 (1164)
T TIGR02169 182 VEENIERL 189 (1164)
T ss_pred HHHHHHHH
Confidence 33333333
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.10 E-value=60 Score=29.32 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=28.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
.-.+.|+.....|.++|.-+++++..|..++.++..++.++|+..
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777776666666666665544444443
No 43
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.94 E-value=8.4 Score=32.10 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRN---AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheq---sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~ 115 (224)
..+|.++|..+..++.++++.-.++.+.=...-.--+.-+. ....+=+.+..-|..+.+|+..|+-.++-++.+...
T Consensus 90 ~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 90 KGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677999999999999888766666554433332222221 222222333444555567777777777777777676
Q ss_pred hHHHHHHHHHHHHHh
Q 027350 116 SDKRVQELEDMIGFM 130 (224)
Q Consensus 116 lErEv~eReEm~~~l 130 (224)
|+.| -++|+..+
T Consensus 170 l~~E---n~~Lv~Rw 181 (194)
T PF08614_consen 170 LEEE---NRELVERW 181 (194)
T ss_dssp HHHH---HHHHHHHH
T ss_pred HHHH---HHHHHHHH
Confidence 6655 34555544
No 44
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=75.94 E-value=5.2 Score=35.68 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=33.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+++|..-+.|..|||.+++.|+-...|+|-||.-|
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVL 162 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVL 162 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999988
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.98 E-value=69 Score=33.90 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
+..|..++..++.+|...+..|.+=..=..=+-.-|. +..+|..++..|..++..+..++..|+.+++...
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 843 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWD-KVDELREEKPELEEQLRDLEQELQELEQELNQLQ 843 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988765444333333333 2334444666666666666666666666555444
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.75 E-value=66 Score=29.09 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
.|.+.|.++|+.+.+.++.|+..|.++..+++.++.+.-
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777766655555443
No 47
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=74.47 E-value=67 Score=30.91 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|..++..+..++....+...++......|+++..+|++.+..|
T Consensus 108 l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l 150 (779)
T PRK11091 108 LKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIEL 150 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544444433333333333455555555555554444
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.95 E-value=57 Score=30.20 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHh--hCCCC
Q 027350 11 QLQQLLRLYIGMSFSLFLA--SLPKN 34 (224)
Q Consensus 11 ~~~kla~sYlGlSFalfla--~lp~~ 34 (224)
+....+..-||+++-.|.- .+|-+
T Consensus 114 ~~~~~i~~~~g~~~~~f~~~v~l~q~ 139 (562)
T PHA02562 114 DFQKYFEQMLGMNYKSFKQIVVLGTA 139 (562)
T ss_pred HHHHHHHHHHCCCHHHHhHHheeccC
Confidence 4455555678888877743 35544
No 49
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=73.93 E-value=93 Score=30.88 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027350 51 EQLKQM 56 (224)
Q Consensus 51 ~Ei~eL 56 (224)
.++..|
T Consensus 198 ~q~~~l 203 (1164)
T TIGR02169 198 QQLERL 203 (1164)
T ss_pred HHHHHH
Confidence 333333
No 50
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.99 E-value=33 Score=33.46 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 71 VEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 71 v~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
..-|.+..-.|..+|..|..+|..+..+....+.++.++-
T Consensus 250 ~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 250 EKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667778999999999999999888888888887665
No 51
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.72 E-value=23 Score=33.26 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+-.|-.+......++.+||+.|++-+|+=.+.. .. ......+.+++..|+.++.+++.....++.
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~---~~------------~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAK---RK------------GEDAEALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hc------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777778888888877776621100 00 012334555666666666666665555554
Q ss_pred H
Q 027350 119 R 119 (224)
Q Consensus 119 E 119 (224)
+
T Consensus 95 ~ 95 (425)
T PRK05431 95 E 95 (425)
T ss_pred H
Confidence 3
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=72.66 E-value=1e+02 Score=30.62 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
.++...+..+...+..++.+++++.
T Consensus 656 ~~~~~~~~~l~~~l~~~~~~~~~l~ 680 (880)
T PRK02224 656 ERAEEYLEQVEEKLDELREERDDLQ 680 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333333
No 53
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.60 E-value=66 Score=30.11 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
.-++..|.......+.+++..|.| ....-.+|...|..|+.+..-+.+.+.+||.+..+.-.+|..+
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~E-----------l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~el-- 74 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDE-----------LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQEL-- 74 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 455666666777777777777733 2222345677777777777777777777777777666555444
Q ss_pred HHHHHHHHHHHh
Q 027350 119 RVQELEDMIGFM 130 (224)
Q Consensus 119 Ev~eReEm~~~l 130 (224)
..+|+++...+
T Consensus 75 -K~kR~ein~kl 85 (294)
T COG1340 75 -KEKRDEINAKL 85 (294)
T ss_pred -HHHHHHHHHHH
Confidence 23456655555
No 54
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=72.56 E-value=82 Score=29.25 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHhH
Q 027350 46 LRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDE--------LEREKLESD 117 (224)
Q Consensus 46 L~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E--------~e~~v~~lE 117 (224)
+..-+.-|+.++.-|..-..+-.+-..-|+..+..|...=.....+-..+=++|..|-.+|.+ .+++++.-+
T Consensus 15 ~~~~~~Dl~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~e 94 (289)
T PF05149_consen 15 KQACEEDLERIKEKIQNTDAEDAAQRKRYAAQRKESEKFLQKNEEQQQELWREIQELERELQDLAEERREEVERRIEMRE 94 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554444444455566788888888765444444444444444444444433 346688999
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHHHh
Q 027350 118 KRVQELEDMIGFMSRRGCEFEVEQQQQQH 146 (224)
Q Consensus 118 rEv~eReEm~~~lsr~~~~~~~~qq~~q~ 146 (224)
+|.+++.+...|| ..+.|+-|-
T Consensus 95 qE~~R~~~~~~Fl-------~~~~qh~q~ 116 (289)
T PF05149_consen 95 QEAKRRTAAEEFL-------QAASQHKQR 116 (289)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHH
Confidence 9999999999999 666665554
No 55
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=71.53 E-value=69 Score=27.97 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
.+..+|..+..++..|++++..++..+.++.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665655555544433
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.22 E-value=1e+02 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=23.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
......+.+...++.+|..|.++|..|+.+..+++
T Consensus 206 ~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e 240 (546)
T PF07888_consen 206 EERESLKEQLAEARQRIRELEEDIKTLTQKEKEQE 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777777777777777775554
No 57
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=71.19 E-value=16 Score=32.83 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~ 115 (224)
+..|..||..||.. ..|+.|.+.+..-++.+-.+ -..|.+.|=..+..|..+.+||++||..|..
T Consensus 9 I~~lf~RL~~ae~~--------prD~eAe~lI~~~~~~qP~A----~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 9 IDDLFSRLKQAEAQ--------PRDPEAEALIAQALARQPDA----PYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHhccCC--------CCCHHHHHHHHHHHHhCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899988877 77999999999988888754 5778888777777766666666666665544
No 58
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.17 E-value=1.2e+02 Score=30.51 Aligned_cols=95 Identities=22% Similarity=0.205 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhh-hHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKAN-ARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKAN-eKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
.-.|.+|.-..|+++++..-++.|---.- -|--+|++--+--=-.+.-.|.-.|.+|.+|...||.-++.++..++.|+
T Consensus 252 nlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 252 NLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777766544443321111 12234444333222234456777888999999999999999998888888
Q ss_pred HHHHHHHHHHHHhhhh
Q 027350 118 KRVQELEDMIGFMSRR 133 (224)
Q Consensus 118 rEv~eReEm~~~lsr~ 133 (224)
.+.++-.+.++.++-+
T Consensus 332 ee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 332 EEDQRSSDLLEALRLQ 347 (502)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 8888777777777544
No 59
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.10 E-value=22 Score=26.57 Aligned_cols=47 Identities=26% Similarity=0.467 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHhHHHHHHHHH
Q 027350 79 NAWQAEEKRLLQQIDAATE---EMASLRSKIDELEREKLESDKRVQELED 125 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~e---Ei~~LR~kl~E~e~~v~~lErEv~eReE 125 (224)
+..+.+|+.+-.+|+.++. ++..|.++..+++..+..+|.+..+-++
T Consensus 46 e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 46 EELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888887755 4666666666666666666665555333
No 60
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.05 E-value=1.1e+02 Score=32.72 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=27.7
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHhHHHHHHHHHHHHHhh
Q 027350 76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE-------KLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~-------v~~lErEv~eReEm~~~ls 131 (224)
..-..+..++.++..++..+..++..||.+..++... ++.-++.+.+|+.|+.-++
T Consensus 312 ~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~ 374 (1311)
T TIGR00606 312 RTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA 374 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555544422 3444444555555555553
No 61
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=69.54 E-value=6.6 Score=28.51 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCCCCchhh-HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 19 YIGMSFSLFLASLPKNSSQA-KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 19 YlGlSFalfla~lp~~~~~S-~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
|+-+++.|+....+.+ +++ .-++.+||...|..|.+.++ |..++++
T Consensus 7 ~la~~~~L~~~~~~~~-a~a~~ltiEqRLa~LE~rL~~ae~-ra~~ae~ 53 (60)
T PF11471_consen 7 ALAVAILLASSACSAS-AQAAPLTIEQRLAALEQRLQAAEQ-RAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHh-hccccCCHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444444444433112 222 44577788877777777764 4444444
No 62
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.47 E-value=31 Score=25.91 Aligned_cols=49 Identities=14% Similarity=0.390 Sum_probs=43.2
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 73 IFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 73 IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
-|..+.+.|...=..|+........+-+.|+++++.+-..|..|.+.+.
T Consensus 18 ~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 18 SYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999999999999999888888776654
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.40 E-value=89 Score=34.00 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=41.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 77 HRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 77 heqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
...-=..+.+.|..+|..+.+.+++||.++++....+...+.+....+.+|--|++
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334456678888888888889999999999888887777777666666655533
No 64
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.22 E-value=87 Score=32.44 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhh---chhhHHHHHHHHHHHHHH
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFAS---HRNAWQAEEKRLLQQIDA 94 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAs---heqsW~~ErKrLr~qI~a 94 (224)
..|..|+...+.+|+++|.--.-.---|+|...+..- .-+.--.+|++||.+|..
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777666554444445555444322 122233445555544443
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.04 E-value=21 Score=31.54 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
-.|.+||+.+..||+.||.+++++.-.++.+.+.-.++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998877666555444
No 66
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.78 E-value=23 Score=27.72 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEF 137 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~ 137 (224)
..-.+|.++|..+..++..|.++-++++..++.|... .++++.+.|...|.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~----~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG----QEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHHcCC
Confidence 3455678888888888888877777777777666532 36788777765443
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.62 E-value=80 Score=27.52 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH---hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEI---FASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~I---FAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~ 115 (224)
...|.+.|..++.++.++... .|.+..++ .+... ..-..|..+-..|.+++..++.+++++++...+
T Consensus 95 lp~le~el~~l~~~l~~~~~~------~~~~~~~l~~~~~~~~----~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNT------WNQRTAEMQQKVAQSD----SVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557777777777776543 11121111 11111 112237777777777777777777777777666
Q ss_pred hHHHH
Q 027350 116 SDKRV 120 (224)
Q Consensus 116 lErEv 120 (224)
+.+..
T Consensus 165 ~~~~~ 169 (206)
T PRK10884 165 KQRTI 169 (206)
T ss_pred HHHHH
Confidence 65543
No 68
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.49 E-value=33 Score=32.23 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
+-.|-.+...+..++.+|++.|+.-+|.
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~ 59 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQ 59 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777777777666654
No 69
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=67.80 E-value=21 Score=29.64 Aligned_cols=104 Identities=24% Similarity=0.310 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHH---HHHhhCCCCch--hhHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHH-
Q 027350 11 QLQQLLRLYIGMSFS---LFLASLPKNSS--QAKEELKARLRAAE-EQLKQMKSRRKEDSKANARVVEIFASHRNAWQA- 83 (224)
Q Consensus 11 ~~~kla~sYlGlSFa---lfla~lp~~~~--~S~r~L~~KL~~AE-~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~- 83 (224)
-+.++|.+--+|=.| |=.||.|-+.. ++ +-++-.+| +.+.+||.+=..+-.....-+.+.+++-+-=+.
T Consensus 13 li~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~a----AD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsl 88 (131)
T PF04859_consen 13 LIAKLFATVSALKAAYAQLQQAHSPYDPDKIQA----ADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSL 88 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHH
Confidence 344555444343333 33468888722 22 11111111 234556655444444434444445554433222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 84 ------EEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 84 ------ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
-=++|..++.+=..||..||.+|+++...-..||+
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 25778899999999999999999999887777664
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=67.76 E-value=1.3e+02 Score=29.76 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
-+.|..+++.+...+..+.++|..+..++++++..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 587 (880)
T PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587 (880)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777666666666666665533
No 71
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=67.61 E-value=40 Score=23.73 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 40 EELKARLRAAEEQLKQMKSRRKED-SKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~ED-AKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
......+..++.+|..|...+.+= ...+....+|-.+.=..|..-...|...|..+..++..++..++.....
T Consensus 8 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~ 81 (123)
T PF02050_consen 8 AEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666667777766655543 1111111245555556666666666666666666666666666555543
No 72
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=67.26 E-value=9.4 Score=31.87 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 93 DAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 93 ~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
=|+.+|+..||.++-|++.+..+||+|-.-
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~EN~l 92 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALERENSL 92 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999998653
No 73
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.12 E-value=1e+02 Score=30.65 Aligned_cols=88 Identities=18% Similarity=0.329 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh---hhhhhhHHHH--------------------HhhhchhhHHHHHHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKE---DSKANARVVE--------------------IFASHRNAWQAEEKRLLQQIDAA 95 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~E---DAKANeKVv~--------------------IFAsheqsW~~ErKrLr~qI~al 95 (224)
...|..+|..||.++.+.|+...= +..+...+-. .|......+ +.|+.++..|
T Consensus 276 L~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v----~~l~~~~~~L 351 (726)
T PRK09841 276 LPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTY----RALLEKRQTL 351 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchH----HHHHHHHHHH
Confidence 566667777777777777765411 1122222222 222222222 2344455555
Q ss_pred HHHHHHHHHhHHHHH---HHHHHhHHHHHHHHHHHHHh
Q 027350 96 TEEMASLRSKIDELE---REKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e---~~v~~lErEv~eReEm~~~l 130 (224)
..++..++.++..+- ....+|+|++.--+++...|
T Consensus 352 ~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 352 EQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554432 33577888887777777665
No 74
>PLN02678 seryl-tRNA synthetase
Probab=66.84 E-value=42 Score=32.42 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
+-.|-++......++.+|+..|+.-+|+
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~ 62 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKE 62 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666677777777777776665
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.50 E-value=1.4e+02 Score=31.53 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~ 127 (224)
.+.+++..++..+.+++..|+..+.++..++..++.+...-.+.+
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655555555544444444444333333
No 76
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=66.46 E-value=20 Score=26.74 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHH---HHHhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 88 LLQQIDAATEEMAS---LRSKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 88 Lr~qI~al~eEi~~---LR~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
|++.|..+..-|.. +..-+++++..++.||++.....+++.++..
T Consensus 33 lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 33 LKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333 5566677777788888888888888888744
No 77
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.34 E-value=78 Score=29.65 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+..|-.++...-+++.+|+..|.+ -|++|..+ +.+|+.+...+..|..++..|+.+.++.
T Consensus 43 Rdeln~kvrE~~e~~~elr~~rde---ineev~el--------K~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 43 RDELNAKVRELREKAQELREERDE---INEEVQEL--------KEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555555555555555555543 46666554 5667777777777777777777777755
No 78
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=66.00 E-value=4.5 Score=30.14 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 94 AATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 94 al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
|+.+|+..||.++.|++.++..||.|-.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999988754
No 79
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.86 E-value=1.2e+02 Score=28.66 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~ls 131 (224)
|..-.+....++..|+.++.+++...++++++..+-+.-+..|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444555555555555555555555555444444444443
No 80
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=65.65 E-value=1e+02 Score=27.69 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHhH
Q 027350 41 ELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAA---TEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 41 ~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al---~eEi~~LR~kl~E~e~~v~~lE 117 (224)
+....|..|-..|.+-...|.+--+.-.+++.+|..-++.=..=.|+|..-|... .+.=+.+..+|++++.+|..|+
T Consensus 118 ~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le 197 (239)
T PF05276_consen 118 AWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELE 197 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555666666778889999998888888888899999887 5666778999999999999999
Q ss_pred HHHHHHHHH
Q 027350 118 KRVQELEDM 126 (224)
Q Consensus 118 rEv~eReEm 126 (224)
+.|...+.-
T Consensus 198 ~~v~~aK~~ 206 (239)
T PF05276_consen 198 AKVKQAKSR 206 (239)
T ss_pred HHHHHHHHH
Confidence 999887653
No 81
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.74 E-value=2.1e+02 Score=31.03 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFA 75 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFA 75 (224)
...+-.+|...+..+..|++....--+-|..+..+-+
T Consensus 232 ~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~ 268 (1353)
T TIGR02680 232 LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRA 268 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555688888888899998888876666665555443
No 82
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=64.62 E-value=20 Score=28.28 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcch
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCE 136 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~ 136 (224)
+|..+|.++..|+..|.+....+++.|..|... .++|+...|+-.+
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg----~~~i~e~AR~~l~ 99 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG----RDYIEERARSELG 99 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhC
Confidence 445555566667777777777777777666666 5677777666444
No 83
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=64.42 E-value=6.4 Score=38.75 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+.+-.|.++|++|+.||..|.+++.++..+|..+|+
T Consensus 24 ~~~~~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 24 ADDIDLLQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 344455668999999998888888888888877766
No 84
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.13 E-value=61 Score=24.94 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
..++.+|.++|.+|.+-+..|-.++++.+...+.|+.|-.=-.+-|+-|
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999988888888888888888888877777777766
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=64.12 E-value=2.4e+02 Score=31.45 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027350 10 KQLQQLLRLYIGMSFSLFLAS 30 (224)
Q Consensus 10 ~~~~kla~sYlGlSFalfla~ 30 (224)
....+++..-||.|.+.|.+.
T Consensus 253 q~drdlFk~lI~~~~~~~aad 273 (1486)
T PRK04863 253 QSDRDLFKHLITESTNYVAAD 273 (1486)
T ss_pred ccHHHHHHHHhhhhhhhhHHH
Confidence 445788999999999999885
No 86
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=64.06 E-value=76 Score=25.59 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027350 39 KEELKARLRAAEEQLKQMKSR 59 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkr 59 (224)
+-.|+--|..++..|..+...
T Consensus 69 vLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 69 VLALLDELERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666667766666666554
No 87
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.77 E-value=63 Score=33.37 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDM 126 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm 126 (224)
..+..++|.++.++|..|+.+|.+.+.+++.|+++-.+-..|
T Consensus 469 ~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 469 KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777766655543
No 88
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.54 E-value=47 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
|..+++.|..+...|+..+..++..+..|.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 89
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=63.14 E-value=1.8e+02 Score=30.74 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.+|..+|...+.|....++...-+++-...=..++...=..+..+...+..++..+..++..+-.++.+.+.++..+..+
T Consensus 196 ~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 275 (1163)
T COG1196 196 EELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333333333344444444445555555555555555444444444444444444444
Q ss_pred HHHHHHHHHH
Q 027350 120 VQELEDMIGF 129 (224)
Q Consensus 120 v~eReEm~~~ 129 (224)
..+-++.+..
T Consensus 276 ~~e~~~~~~~ 285 (1163)
T COG1196 276 LEELREELEE 285 (1163)
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 90
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=63.00 E-value=1.6e+02 Score=28.87 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 027350 44 ARLRAAEEQLKQMK 57 (224)
Q Consensus 44 ~KL~~AE~Ei~eLK 57 (224)
..+..|+.+..+++
T Consensus 25 ~~l~~Ae~eAe~i~ 38 (514)
T TIGR03319 25 KKLGSAEELAKRII 38 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555555
No 91
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=62.89 E-value=15 Score=32.27 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 027350 20 IGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 20 lGlSFalfla~lp~~~~~S~r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
||+=-+..+...|.+++|+...|..|+...|.||++|++|.+
T Consensus 135 L~~lv~~~~l~g~~gs~~~~~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 135 LCLLVLVCFLTGLVGSYWRSASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred HHHHHHHHHHccccCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 333334444455666667788899999999999999998854
No 92
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=62.70 E-value=23 Score=30.62 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
-.||..|+.++.-+++||.-||.-|.--+.+.-+|-|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKr 64 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKR 64 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4678899999999999999999988776666555543
No 93
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=62.68 E-value=23 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
...+.+|..|..|-+.||++|+-++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456788888888888888887543
No 94
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=61.83 E-value=40 Score=22.97 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
|.+-+..+..+..++..|......|...+..|++|
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445556666666666666666666666666554
No 95
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=61.49 E-value=9.6 Score=34.24 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 027350 89 LQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E 108 (224)
.+.|.||++|++.||+|++.
T Consensus 121 lqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999874
No 96
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.38 E-value=1.4e+02 Score=27.65 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 93 DAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 93 ~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+-+.++|..+...+..++..+..++....+|++.++.=
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444445556666666666666543
No 97
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.34 E-value=94 Score=28.35 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
..|++.|.+++..|..|-..|.+.+.+++...++++++
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444444433
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.84 E-value=1.9e+02 Score=29.22 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
........|..+++.|..+...++.++.+++..+..+.+...+-+.+.+.|
T Consensus 196 el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 196 ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555556666666555555555555555555544
No 99
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.75 E-value=43 Score=23.26 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 99 MASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 99 i~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|..|..++..++.....|..++..-...+..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333333
No 100
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=60.69 E-value=2.1e+02 Score=29.47 Aligned_cols=127 Identities=21% Similarity=0.307 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCch-----------------------hh-HHHHHHHHHHHH------HHHHHHHhhh
Q 027350 11 QLQQLLRLYIGMSFSLFLASLPKNSS-----------------------QA-KEELKARLRAAE------EQLKQMKSRR 60 (224)
Q Consensus 11 ~~~kla~sYlGlSFalfla~lp~~~~-----------------------~S-~r~L~~KL~~AE------~Ei~eLKkrR 60 (224)
-.++++--||.=|.-+||-.-|...| .+ .+.|..++..|+ +.+++-++-=
T Consensus 228 ~Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l 307 (622)
T COG5185 228 MVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRAL 307 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999987666622 12 233333333322 2222222222
Q ss_pred hhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHhHHHHHHHHHHHHHhhhh
Q 027350 61 KEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK-------LESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 61 ~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v-------~~lErEv~eReEm~~~lsr~ 133 (224)
..|.--=.-.|.-.-+--+.|.--=++|.-+|...++||..|+++..++...+ +..|.-++||+++-.-|-+-
T Consensus 308 ~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i 387 (622)
T COG5185 308 KSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI 387 (622)
T ss_pred hhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34543334455556678899999999999999999999999999999999663 88999999999998888776
Q ss_pred cchh
Q 027350 134 GCEF 137 (224)
Q Consensus 134 ~~~~ 137 (224)
|+..
T Consensus 388 ~~~~ 391 (622)
T COG5185 388 NIQS 391 (622)
T ss_pred cchH
Confidence 6443
No 101
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.63 E-value=84 Score=29.57 Aligned_cols=82 Identities=26% Similarity=0.319 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKS----RRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKk----rR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~ 114 (224)
+..|.+||..|...|+=||. .|..| .+|=+.|.. .||..|..|+..+...+..|-. |+.+...
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~r~~~-------~~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~---d~qs~lD 154 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQRVGD-------EGIGARHFP---HEREDLVEQLEKLREQIEQLER---DLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhhhhh-------ccccccccc---hHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 34555666666666544443 23333 344444444 8999999999777776666543 3345567
Q ss_pred HhHHHHHHHHHHHHHhhhh
Q 027350 115 ESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 115 ~lErEv~eReEm~~~lsr~ 133 (224)
+.|+=+.|||.+-.+..|-
T Consensus 155 EkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRL 173 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888999988888775
No 102
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.52 E-value=1.2e+02 Score=26.89 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.|...|.++=.+..+|++.+..-++.|+.-+..++.+-.++.+.+..+
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666667777766666666666666666554
No 103
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=59.19 E-value=48 Score=26.80 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcch
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCE 136 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~ 136 (224)
.+.+++..+..-+..|..++..++.....+++ ..|+.|-..|+-.|..
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~--~~~~~~~~~~~~~~~~ 125 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR--AQRMKMTKELSQQVLT 125 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCHHhHH
Confidence 46677778888888888889888888888888 7889998888766643
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=58.87 E-value=1.1e+02 Score=25.64 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh---hhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKE---DSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~E---DAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~ 115 (224)
...|..++...|.++..+..-... ||-.--+++.-.-..=..=..++++|..++..+..|--.|-..+.+++.+|..
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888887666544332 33333456666666667778889999999999999988888888888888888
Q ss_pred hHHHHHHHHHHHHHh
Q 027350 116 SDKRVQELEDMIGFM 130 (224)
Q Consensus 116 lErEv~eReEm~~~l 130 (224)
||.-...-..+|..+
T Consensus 99 LE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 99 LESLNSSLENLLQEK 113 (140)
T ss_pred HHHHhHHHHHHHHHH
Confidence 887776655555443
No 105
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=58.70 E-value=86 Score=28.11 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H---HH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELER-E---KL 114 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~-~---v~ 114 (224)
...|+.++...-.+|..++..=.++. +....+|..+.++|+.|+.++...+. - .-
T Consensus 136 a~~l~~~~n~~~~~L~~~~~~~~~~i---------------------~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n 194 (322)
T TIGR02492 136 AQALANSFNQTSNELQDLRKGINAEI---------------------KSAVTEINSLLKQIASLNKEIQQVEAKSGQDAN 194 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch
Confidence 77788888888888888876433222 23455788888888888888877664 1 22
Q ss_pred HhHHHHHHHHHHHHHhhhh
Q 027350 115 ESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 115 ~lErEv~eReEm~~~lsr~ 133 (224)
+| .-+||.++..||.-
T Consensus 195 ~L---~DqRD~ll~~LS~~ 210 (322)
T TIGR02492 195 DL---LDQRDLLLKELSQL 210 (322)
T ss_pred Hh---HHHHHHHHHHHHhH
Confidence 22 34799999999875
No 106
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=58.63 E-value=1.1e+02 Score=25.80 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027350 46 LRAAEEQ 52 (224)
Q Consensus 46 L~~AE~E 52 (224)
+..|+.+
T Consensus 29 ~~~A~~~ 35 (201)
T PF12072_consen 29 LEQAEKE 35 (201)
T ss_pred HHHHHHH
Confidence 3333333
No 107
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=58.11 E-value=45 Score=26.21 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
...+..-|.+++-.+..++. |+..-.-..+.|.....++...|..+.++|..|+.+|.+.+..
T Consensus 48 ~e~~l~~l~~~e~~~~k~q~-----------~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 48 YERLLKELAQFEFSILKSQL-----------ILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRV 110 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666655443 3333334668899999999999999999999999999988754
No 108
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=57.40 E-value=75 Score=30.46 Aligned_cols=80 Identities=11% Similarity=0.220 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
...|+.++..+-.+|.+++.-=..+. +....+|..+.++|+.|+.++...+..-..-=.
T Consensus 148 a~~La~~~n~~~~~L~~~~~~~~~~i---------------------~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~nd 206 (507)
T PRK07739 148 AQALAETFNYLSQSLTDIQNDLKSEI---------------------DVTVKEINSLASQISDLNKQIAKVEPNGYLPND 206 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 67777888888888877765322222 345567888888888888888766532100111
Q ss_pred HHHHHHHHHHHhhhh-cchhHH
Q 027350 119 RVQELEDMIGFMSRR-GCEFEV 139 (224)
Q Consensus 119 Ev~eReEm~~~lsr~-~~~~~~ 139 (224)
=.-+||.++..||.. +|.+.+
T Consensus 207 LlDqRD~ll~~LS~~v~i~v~~ 228 (507)
T PRK07739 207 LYDQRDLLLDELSKIVNITVEY 228 (507)
T ss_pred hHHHHHHHHHHHHhhcCeEEec
Confidence 234799999999876 565443
No 109
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.32 E-value=13 Score=25.59 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027350 41 ELKARLRAAEEQLKQMK 57 (224)
Q Consensus 41 ~L~~KL~~AE~Ei~eLK 57 (224)
.+..++..+++++++++
T Consensus 45 ~~r~~~~~~~k~l~~le 61 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLE 61 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 110
>PRK12704 phosphodiesterase; Provisional
Probab=56.89 E-value=2e+02 Score=28.18 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 027350 44 ARLRAAEEQLKQMK 57 (224)
Q Consensus 44 ~KL~~AE~Ei~eLK 57 (224)
.++..|+.+...++
T Consensus 31 ~~l~~Ae~eAe~I~ 44 (520)
T PRK12704 31 AKIKEAEEEAKRIL 44 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 111
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=56.83 E-value=1.9e+02 Score=27.91 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHH-HH
Q 027350 41 ELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAA----TEEMASLRSKIDELEREK-LE 115 (224)
Q Consensus 41 ~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al----~eEi~~LR~kl~E~e~~v-~~ 115 (224)
++.......+..+..||..=.-|.+- -.=+-++.+-+.|| |-.|+..+ .+||..|+..|+.++.++ =.
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e~~~-----~~~~LqEEr~R~er--LEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yq 295 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQREYQF-----ILEALQEERYRYER--LEEQLNDLTELHQNEIYNLKQELASMEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344555566666666432222210 00122344444433 45555444 789999999999999775 23
Q ss_pred hHHHHHHHHHHHHHhhhhcchhHHHHHHHHhhhh
Q 027350 116 SDKRVQELEDMIGFMSRRGCEFEVEQQQQQHYHQ 149 (224)
Q Consensus 116 lErEv~eReEm~~~lsr~~~~~~~~qq~~q~~~~ 149 (224)
..+...+=.|.++-+.-+=...+ +|++|++-+
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE--~~~~Qq~~q 327 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE--QQQQQQVVQ 327 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhh
Confidence 33444444555554422211113 566666443
No 112
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=56.23 E-value=1.5e+02 Score=26.47 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRS--KIDELEREKLES 116 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~--kl~E~e~~v~~l 116 (224)
.+.|..-+......|+.-+.|-..+.......+.-.. ...-..|..+|+.++.++..|-. ++++.+..+..+
T Consensus 85 ~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~------~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~ 158 (254)
T PF03194_consen 85 LRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEK------AEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEV 158 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhH------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444455555555565555554444333222211100 33445566667777777666654 477777777777
Q ss_pred HHHHHHHHHHHH
Q 027350 117 DKRVQELEDMIG 128 (224)
Q Consensus 117 ErEv~eReEm~~ 128 (224)
|+=..+|+++..
T Consensus 159 e~Lk~ek~~le~ 170 (254)
T PF03194_consen 159 EKLKEEKEELEK 170 (254)
T ss_pred HHHHHHHHHHHh
Confidence 777777777777
No 113
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.09 E-value=1.1e+02 Score=29.04 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.|..--.-+..++..+..++..|..++.+++.++..|+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4665444555555555555555555555555555444444
No 114
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=55.53 E-value=39 Score=31.58 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
|+|++++|.-|++-+..|-.+..++...+
T Consensus 222 r~rkLdrisrLEdkv~~lk~~n~~L~~~l 250 (279)
T KOG0837|consen 222 RKRKLDRISRLEDKVKTLKIYNRDLASEL 250 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 44444444444444444444444433333
No 115
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=55.38 E-value=91 Score=30.93 Aligned_cols=112 Identities=25% Similarity=0.325 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcch-----------hHHHHHHHHh
Q 027350 78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCE-----------FEVEQQQQQH 146 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~-----------~~~~qq~~q~ 146 (224)
.+.=+.|+++|.+++..+..+=..|...|.+.+.+.+++.++...--.--..+-|.-+. ..|+++|+.-
T Consensus 185 ~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldk 264 (447)
T KOG2751|consen 185 LKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDK 264 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 45567889999999999998888888888888888777766654433323333233211 2444444432
Q ss_pred hhhhhhhHHHhhhccccccccCCCCCCCCCC-CCCchhhhhhhhhhhHHhhhhhh
Q 027350 147 YHQHQEEEEEEFGVCESRECYGGANDGQIGN-FGFSSEFLASASKFWTERASSIW 200 (224)
Q Consensus 147 ~~~~~e~ee~~~g~c~~recy~g~~~g~~~~-~gf~~~f~~sask~W~e~~~~~w 200 (224)
--..-+|..| .---.+|..|- +||-...+++..=.|.|=. .-|
T Consensus 265 -----L~ktNv~n~~-----F~I~~~G~fgtIN~FRLG~lp~~pVew~EIN-AA~ 308 (447)
T KOG2751|consen 265 -----LRKTNVFNAT-----FHIWHDGEFGTINNFRLGRLPSVPVEWDEIN-AAW 308 (447)
T ss_pred -----HHhhhhhhhe-----eeEeecccccccccceeccccCCCcCHHHHH-HHh
Confidence 1223444443 33345666666 8899889999999999955 445
No 116
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=55.35 E-value=1e+02 Score=24.39 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHhHH
Q 027350 79 NAWQAEEKRLLQQIDAA--------TEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al--------~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
..|..=.+.+..++..+ .+||..|+.+|+.+++++.+|+.
T Consensus 70 ~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 70 RNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555544 57788888888888888777753
No 117
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=54.54 E-value=1e+02 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027350 42 LKARLRAAEEQLKQMKS 58 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKk 58 (224)
...|...++.++++|..
T Consensus 12 a~~r~e~~e~~~K~le~ 28 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQ 28 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.32 E-value=1.8e+02 Score=28.51 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027350 40 EELKARLRAAEEQLKQMKS 58 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKk 58 (224)
..|..++...+.+|.++.+
T Consensus 394 ~~~~~~~~~~e~el~~l~~ 412 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDK 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543
No 119
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=53.98 E-value=1.9e+02 Score=26.91 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=43.1
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHhHHHHHHHHHHHHHh
Q 027350 70 VVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE---KLESDKRVQELEDMIGFM 130 (224)
Q Consensus 70 Vv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~---v~~lErEv~eReEm~~~l 130 (224)
...|-+++. .+.+.|.+++..|..++..++.++..+-.. ..+|+|++.--..+.+-|
T Consensus 333 ~~~~~~~~~----~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~l 392 (458)
T COG3206 333 LRQILASLP----NELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETL 392 (458)
T ss_pred HHHHHHhch----hHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444 347889999999999999999888776533 689999998887777766
No 120
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=52.77 E-value=51 Score=25.42 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 92 IDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 92 I~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
|+-+..||.--|+|+++++++++.||....+-
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666655443
No 121
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.74 E-value=1.6e+02 Score=31.56 Aligned_cols=69 Identities=32% Similarity=0.378 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHhhhhhhhhhhhH-----HHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQL-----------KQMKSRRKEDSKANAR-----VVEIFASHRNAWQAEEKRLLQQIDAATEEMASL 102 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei-----------~eLKkrR~EDAKANeK-----Vv~IFAsheqsW~~ErKrLr~qI~al~eEi~~L 102 (224)
+.+.+||+.++|+.+ +++|+.|.|+|-+=-| --+|. ..-+.|=.+|-.+|-+-..=|..|
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I----~~lm~EGEkLSK~ql~qs~iIkKL 479 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEII----NQLMAEGEKLSKKQLAQSAIIKKL 479 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788889999998876 4566777777654222 11122 223445555555555555558888
Q ss_pred HHhHHHHHH
Q 027350 103 RSKIDELER 111 (224)
Q Consensus 103 R~kl~E~e~ 111 (224)
|+|..+.+.
T Consensus 480 RAk~ke~et 488 (961)
T KOG4673|consen 480 RAKIKEAET 488 (961)
T ss_pred HHHhhhhhH
Confidence 888877763
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.30 E-value=80 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=12.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhhh
Q 027350 111 REKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 111 ~~v~~lErEv~eReEm~~~lsr 132 (224)
..+..|+.+...-++-+..|..
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666544
No 123
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=52.14 E-value=2.4e+02 Score=32.63 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRR---KEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR---~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
.+++..++...+++-..|.+-+ .++...+.++..=..+..+-|..|...+-++|..|.+||..++..++.+-...
T Consensus 910 l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 910 LKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEK 987 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554433332211 24566666777777788888999999999999999999888887776665443
No 124
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.08 E-value=1.4e+02 Score=24.86 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDS--KANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDA--KANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
...|..++..++.++..+..+ .+.| +-|+-.+.-.+...+.-...-..|..++..+...+..|+..|.+++.++..+
T Consensus 53 ~~~le~~~~~~~~~~~~~~~~-A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 53 QKRLERKLDEAEEEAEKWEKQ-AELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666655555432 2222 1234444444444444444455555555555555555555555555444443
No 125
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.87 E-value=1.8e+02 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
|-..+.....-|.+|+...-.+|+..+..+.+|.+..
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444544444444444433
No 126
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=51.64 E-value=1e+02 Score=27.69 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027350 40 EELKARLRAAEEQLKQMKS 58 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKk 58 (224)
.+|.+++..+..+++.|-.
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 5788888888888888875
No 127
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.14 E-value=2.9e+02 Score=28.37 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCch-hh----------------HHHHHHHHHHHHHHH-------------HHHHhh
Q 027350 10 KQLQQLLRLYIGMSFSLFLASLPKNSS-QA----------------KEELKARLRAAEEQL-------------KQMKSR 59 (224)
Q Consensus 10 ~~~~kla~sYlGlSFalfla~lp~~~~-~S----------------~r~L~~KL~~AE~Ei-------------~eLKkr 59 (224)
+-+-|++-.|+-=|+-.|+=.-++..+ |+ ...|......++++| ++.+++
T Consensus 191 ~~m~k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~ 270 (581)
T KOG0995|consen 191 KTMNKLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKAR 270 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 334478889999999999887776532 21 112222222333333 333333
Q ss_pred hhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHhHHHHHHHHHHHHHhhh
Q 027350 60 RKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE-------KLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 60 R~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~-------v~~lErEv~eReEm~~~lsr 132 (224)
=+.|..-=.-.|.=+-++-|.|--.=++|.-+|....+|+-.|+.+..+++.. ++++|+-..+|.++..-|-+
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34454433455666889999999999999999999999999999999999865 37888888888887766655
Q ss_pred hc
Q 027350 133 RG 134 (224)
Q Consensus 133 ~~ 134 (224)
-+
T Consensus 351 i~ 352 (581)
T KOG0995|consen 351 IQ 352 (581)
T ss_pred HH
Confidence 44
No 128
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.12 E-value=38 Score=25.15 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027350 79 NAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~ 114 (224)
..+..+-+.|+.+|..+.++++.++.+++-+++++.
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777766665544
No 129
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=51.05 E-value=99 Score=31.34 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE---KLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~---v~~ 115 (224)
...|+.++...-.+|.+|++-=..+ =+....+|..+.++|+.|+.++..++.. .-+
T Consensus 136 A~~La~~fn~~~~~L~~l~~~vn~q---------------------I~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~Nd 194 (676)
T PRK05683 136 AQGLSKRFNSLSSQLNQQNSNINSQ---------------------LSAMTDQVNNLTTSIASYNKQIAQASASGATPND 194 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Confidence 6677777777777777776432222 2234557777788888888888655432 122
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 027350 116 SDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 116 lErEv~eReEm~~~lsr~ 133 (224)
| .-+||.++..||.-
T Consensus 195 L---lDqRD~Ll~eLS~~ 209 (676)
T PRK05683 195 L---LDARDEAVRQLNEL 209 (676)
T ss_pred h---HHHHHHHHHHHHhh
Confidence 2 34799999999876
No 130
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.98 E-value=1.3e+02 Score=32.48 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR 103 (224)
++-|-.|+.+-+.++++| |+++++|..+-...|..++-.|-.+.+.+-+-|+.|.
T Consensus 778 r~~LqkrIDa~na~Lrrl----------~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~ 832 (1104)
T COG4913 778 RRQLQKRIDAVNARLRRL----------REEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQ 832 (1104)
T ss_pred HHHHHHhhhhhHHHHHHH----------HHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHH
Confidence 555666677667776655 5789999999999999999999999998877766654
No 131
>PLN02320 seryl-tRNA synthetase
Probab=50.75 E-value=1.1e+02 Score=30.31 Aligned_cols=6 Identities=67% Similarity=1.065 Sum_probs=3.4
Q ss_pred hhhhhh
Q 027350 187 SASKFW 192 (224)
Q Consensus 187 sask~W 192 (224)
+|++||
T Consensus 221 sG~~f~ 226 (502)
T PLN02320 221 SGSKFY 226 (502)
T ss_pred CCCeeE
Confidence 356664
No 132
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=50.74 E-value=1.4e+02 Score=25.38 Aligned_cols=47 Identities=15% Similarity=0.363 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhHHHHHHHHHHHHHhhhh
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREK-LESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v-~~lErEv~eReEm~~~lsr~ 133 (224)
.|..++..|..++..|+.+.+.++.+. +....+.....+=+.+|.+.
T Consensus 131 ~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 131 ELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555442 23333344444445555443
No 133
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=50.65 E-value=77 Score=26.13 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
.....+......||.+||+-.+- | .++.+ ++.=-||+++++.+++|+..++..+...+..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~----------i-S~qDe--FAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA----------I-SAQDE--FAKWAKLNRKLDKLEEELEKLNKSLSSEKSS 95 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT----------S--TTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHc----------C-CcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666543322 1 11111 2222357888888888877777666555443
No 134
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=50.30 E-value=63 Score=29.07 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
.++.+..+++..|.++++.++...+.++.+.
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 57 (378)
T TIGR01554 27 KELTAAALEKEELETDVEKLKEEIKLLEDAI 57 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666677777766666665544444333
No 135
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.85 E-value=2.3e+02 Score=28.62 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 79 NAWQAEEKRLLQQIDAATE-------EMASLRSKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~e-------Ei~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
+-|-.-|+-|..++..|.+ |....-.++.++...+++++.|+..+++++..|..
T Consensus 415 ~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 415 QQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777766666643 34444455556666688889999999998777643
No 136
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.78 E-value=2.7e+02 Score=27.50 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027350 39 KEELKARLRAAEEQLKQMKSR 59 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkr 59 (224)
+..|..++..++.++.+|..+
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~ 310 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTT 310 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 666677777777666665553
No 137
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=49.63 E-value=59 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.|....+.|..+...|++|++.|+.++.+++ ++..|-.+-.++++.-
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~----~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQELE----QLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCc
Confidence 4666777788888888888777777766553 4444555555565544
No 138
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.30 E-value=83 Score=28.14 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=43.3
Q ss_pred hhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 66 ANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 66 ANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.+..+..|..+| |.|+|+++..|++|++.+...+..++..++.|..+--+-=|=+-+|
T Consensus 76 ~~~siLpIVtsQ-------RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 76 GDSSILPIVTSQ-------RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred CcccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677666 5678888999999999888888888888888877665555555555
No 139
>PRK12705 hypothetical protein; Provisional
Probab=49.23 E-value=2.8e+02 Score=27.56 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 027350 47 RAAEEQLKQMK 57 (224)
Q Consensus 47 ~~AE~Ei~eLK 57 (224)
..|+.+...++
T Consensus 40 ~~a~~~a~~~~ 50 (508)
T PRK12705 40 QEAQKEAEEKL 50 (508)
T ss_pred HHHHHHHHHHH
Confidence 34555554444
No 140
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.14 E-value=50 Score=30.25 Aligned_cols=17 Identities=18% Similarity=-0.093 Sum_probs=10.9
Q ss_pred hhhhhHHhhhhhhhhcch
Q 027350 188 ASKFWTERASSIWQDVQY 205 (224)
Q Consensus 188 ask~W~e~~~~~wQDvqy 205 (224)
.++.=+..+ ++.+|+.|
T Consensus 197 ~m~~~~~~~-ggl~d~~~ 213 (247)
T COG3879 197 AMLAALNAP-GGLQDLLL 213 (247)
T ss_pred HHHHHhhcc-chHHHHHh
Confidence 455555666 77787755
No 141
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.58 E-value=1.4e+02 Score=25.63 Aligned_cols=25 Identities=20% Similarity=0.522 Sum_probs=12.7
Q ss_pred CCCchhhhhh--hhh--hhHHhhhhhhhhc
Q 027350 178 FGFSSEFLAS--ASK--FWTERASSIWQDV 203 (224)
Q Consensus 178 ~gf~~~f~~s--ask--~W~e~~~~~wQDv 203 (224)
.|.-+-||-| ++. +|.... ..|+.+
T Consensus 189 lGr~~l~~~t~Dg~~~g~~~~~~-~~W~~l 217 (251)
T PF11932_consen 189 LGRVALYYQTLDGSQAGVWDPAT-GQWQWL 217 (251)
T ss_pred ecchhheeECCCccceeeecCCC-CCCeEC
Confidence 4444445544 333 444444 678875
No 142
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=48.38 E-value=1.2e+02 Score=28.74 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE---KLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~---v~~ 115 (224)
...|+.++...-.+|.+++.. +|. +=+....+|..+.++|+.|+.++...+.. .-+
T Consensus 136 a~~la~~~n~~~~~l~~~~~~------~~~---------------~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~nd 194 (456)
T PRK07191 136 ANAMALRFNNVNNFIVQQKKS------IGQ---------------QRDATVKQINSLTRSIADYNQKILKNRSDGNNISD 194 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Confidence 566666666666666666542 121 12344567888888888888888766532 122
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 027350 116 SDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 116 lErEv~eReEm~~~lsr~ 133 (224)
| .-+||.+|..||.-
T Consensus 195 L---~DqRD~ll~eLS~~ 209 (456)
T PRK07191 195 L---LDQRDLQIKKLSGL 209 (456)
T ss_pred h---HHHHHHHHHHHHhh
Confidence 2 34799999999876
No 143
>PRK15396 murein lipoprotein; Provisional
Probab=48.01 E-value=1.2e+02 Score=23.16 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCC--ch--hh-HHHHHHHHHHHHHHHHHHHh----hhhhhhhhhhHHHHHhh
Q 027350 14 QLLRLYIGMSFSLFLASLPKN--SS--QA-KEELKARLRAAEEQLKQMKS----RRKEDSKANARVVEIFA 75 (224)
Q Consensus 14 kla~sYlGlSFalfla~lp~~--~~--~S-~r~L~~KL~~AE~Ei~eLKk----rR~EDAKANeKVv~IFA 75 (224)
+|...-+.||++| |+--.++ +- .+ ...|-.+...+...+..+|. --.|-+|||.|.--|-.
T Consensus 5 kl~l~av~ls~~L-LaGCAs~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 5 KLVLGAVILGSTL-LAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred HHHHHHHHHHHHH-HHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555532 2322222 11 22 55666666666666555543 23466677777655533
No 144
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=47.34 E-value=1.3e+02 Score=29.93 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE---KLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~---v~~ 115 (224)
...|+.++...-.+|.+++.-=..+ -+....+|..+.++|+.|+.++...+.. .-+
T Consensus 148 A~~La~~~n~~~~~L~~~~~~~~~~---------------------i~~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~nd 206 (627)
T PRK06665 148 AQSLGERIHDRYRSLERIRDMANDE---------------------IEITVEEINNILRNIADLNEQIVKSQAMGDNPND 206 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchh
Confidence 6667777777777777776432221 2223457777888888888888766532 122
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 027350 116 SDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 116 lErEv~eReEm~~~lsr~ 133 (224)
| .-+||.|+..||.-
T Consensus 207 L---lDqRD~ll~eLS~~ 221 (627)
T PRK06665 207 L---LDRRDLLVDKLSSL 221 (627)
T ss_pred h---HHHHHHHHHHHHhh
Confidence 2 34799999999876
No 145
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=47.12 E-value=1.1e+02 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDM 126 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm 126 (224)
.-++..++.-++.+-..|-.++++++...+..|+...|+-+.
T Consensus 187 k~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~i 228 (259)
T KOG4001|consen 187 KTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREI 228 (259)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 456778888888888888888888886654444444443333
No 146
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.99 E-value=1.4e+02 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+.++.|.-+|+.+|.++..+.++++.+++
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666666666666666666666655544
No 147
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=46.92 E-value=1.8e+02 Score=25.34 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=22.3
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 027350 54 KQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATE 97 (224)
Q Consensus 54 ~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~e 97 (224)
..++.++..|+.++.....+.+-++ +=.+-|+||..+.++...
T Consensus 59 r~~r~~~~~~~~~~~dpd~v~~rqE-a~eaAR~RmQEE~dakA~ 101 (190)
T PF06936_consen 59 RSLRERRQLDAAAKKDPDVVVRRQE-AMEAARRRMQEELDAKAE 101 (190)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcChhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4556666666666544444444433 333455556555554433
No 148
>PRK11519 tyrosine kinase; Provisional
Probab=46.63 E-value=2.8e+02 Score=27.72 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRR 60 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR 60 (224)
...|..+|..||..+.+.|+.-
T Consensus 276 l~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 276 LPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 6666777777777777777654
No 149
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.55 E-value=1.7e+02 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 027350 90 QQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~ 109 (224)
.++..+.++|..++.++++.
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 150
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=46.51 E-value=1.7e+02 Score=24.30 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---H
Q 027350 40 EELKARLRAAEEQLKQMKS--RRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK---L 114 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKk--rR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v---~ 114 (224)
..|++.+.+...+|.+||. +|.||.-| .-|-.+-++++.|-+.+..|-..+..+++.+ +
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa----------------~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSA----------------ASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------hhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 4678888888899988874 34444433 2244566677777777777766666666553 5
Q ss_pred HhHHHHHHHHHH
Q 027350 115 ESDKRVQELEDM 126 (224)
Q Consensus 115 ~lErEv~eReEm 126 (224)
.++.+|. |-.+
T Consensus 68 pVT~dV~-rwkl 78 (112)
T PF07439_consen 68 PVTDDVK-RWKL 78 (112)
T ss_pred chHHHHH-HHHH
Confidence 6667776 4444
No 151
>PRK14127 cell division protein GpsB; Provisional
Probab=46.40 E-value=34 Score=27.55 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLE 115 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~ 115 (224)
.|..+|..|.+++..|+.+|++++.++..
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555666666666666666666665543
No 152
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=46.15 E-value=1.4e+02 Score=28.50 Aligned_cols=71 Identities=8% Similarity=0.192 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE---KLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~---v~~ 115 (224)
...|+.++...-.+|.+++.-= | .+-+....+|..+.++|+.|+.++...+.. .-+
T Consensus 131 a~~L~~~~n~~~~~L~~~~~~~------~---------------~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~~~nd 189 (483)
T PRK07521 131 AQDLANSLNDASDAVQSARADA------D---------------AEIADSVDTLNDLLAQFEDANNAVVSGTATGRDASD 189 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchh
Confidence 6667777777777777766432 2 222334567788888888888888665532 122
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 027350 116 SDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 116 lErEv~eReEm~~~lsr~ 133 (224)
| .-+||.+|..||.-
T Consensus 190 L---~DqRD~ll~~LS~~ 204 (483)
T PRK07521 190 A---LDQRDKLLKQISQI 204 (483)
T ss_pred h---HHHHHHHHHHHHhh
Confidence 2 34799999999876
No 153
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=45.87 E-value=1.9e+02 Score=26.28 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=24.9
Q ss_pred hchhhHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHhH
Q 027350 76 SHRNAWQAEEKRLLQQIDAA--------TEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al--------~eEi~~LR~kl~E~e~~v~~lE 117 (224)
.-=++...=|+++...++.. ..||..|-++|.|+++++.+|.
T Consensus 243 ~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 243 QLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 33345555555555555544 5667777777777776666553
No 154
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=45.34 E-value=2.1e+02 Score=26.82 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~ 114 (224)
..+..-++|......+.+++..|..++.+++..++
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555665555566665555555555554443
No 155
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=45.33 E-value=73 Score=31.10 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.|+.-|.=|++.|.+++-.+-++|++.-+.-+++..|+.+-+-|+..|
T Consensus 140 NEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~L 187 (405)
T KOG2010|consen 140 NEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVL 187 (405)
T ss_pred ccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999999999988899999999999999988
No 156
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=45.23 E-value=62 Score=29.21 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.|+..|++++.-+++||.-||..|+--++.+-+|-|.
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999988766666555443
No 157
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.16 E-value=2.9e+02 Score=29.58 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 77 HRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 77 heqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
..+.|..+-..|..+|..+..+|..+..+++.+...
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~ 917 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455666666666666666666655555555555533
No 158
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.10 E-value=3.8e+02 Score=27.96 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhHHHHHhh---hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA-NARVVEIFA---SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA-NeKVv~IFA---sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~ 114 (224)
...|.+|+..|..|+.+||. +-|+ .++...... -....|..+-..|..++..+......-++++.+++..+.
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~----ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr 429 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKA----ELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELR 429 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 56788999999999988843 2221 122222222 223457777777777777777766666778888888877
Q ss_pred HhHHHHHHHH
Q 027350 115 ESDKRVQELE 124 (224)
Q Consensus 115 ~lErEv~eRe 124 (224)
.+..-+++..
T Consensus 430 ~l~~~A~E~q 439 (717)
T PF09730_consen 430 ALSKLAGESQ 439 (717)
T ss_pred HHHHHHHhHH
Confidence 7777776643
No 159
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.05 E-value=1.5e+02 Score=28.55 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----H
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE-----K 113 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~-----v 113 (224)
...|+.++...-.+|.+++.-=.++. +....+|..+.++|+.|+.++...+.. .
T Consensus 137 a~~l~~~~n~~~~~L~~~~~~~~~~i---------------------~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ 195 (547)
T PRK08147 137 AEGLVNQFKTTDQYLRDQDKGVNTAI---------------------GSSVDQINNYAKQIASLNDQITRLTGVGAGASP 195 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 67788888888888888775322222 234567888888888888888766541 1
Q ss_pred HHhHHHHHHHHHHHHHhhhh
Q 027350 114 LESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 114 ~~lErEv~eReEm~~~lsr~ 133 (224)
-+| .-+||.++..||..
T Consensus 196 ndL---~DqRD~ll~eLS~~ 212 (547)
T PRK08147 196 NDL---LDQRDQLVSELNQI 212 (547)
T ss_pred chh---HHHHHHHHHHHHhh
Confidence 222 34799999999876
No 160
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=45.03 E-value=55 Score=23.39 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcch
Q 027350 99 MASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCE 136 (224)
Q Consensus 99 i~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~ 136 (224)
|..||.+++.++.++..|......=+.+.-|-+-++||
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG 38 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVG 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhh
Confidence 45677777777777777766666655555555444443
No 161
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=44.70 E-value=2.2e+02 Score=25.14 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 44 ARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRS 104 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~ 104 (224)
+.|...+.++...+.+...--+.+.........+++......+.+..+|..|.+.+..-|.
T Consensus 197 ~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 197 QQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555444444455555556656666555555555555555555444444
No 162
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.56 E-value=2.4e+02 Score=28.55 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
+..+...+..++.|+.+||++=.
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 78888899999999999987643
No 163
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.53 E-value=2.2e+02 Score=31.75 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----HhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQM-----KSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKID 107 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eL-----KkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~ 107 (224)
.++|-..++.++.|+.++ |+-|.+--+ .++.+||---=|.=+++=+++.++|+.+..+|+.+...+.
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq--~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~ 931 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAKKARIKELQ--NKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIK 931 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 444445566666666666 433333333 3677788777777788888888888888888777766554
No 164
>PTZ00332 paraflagellar rod protein; Provisional
Probab=44.22 E-value=93 Score=31.76 Aligned_cols=49 Identities=20% Similarity=0.376 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchhHHHHHHHHh
Q 027350 91 QIDAATEEMASL-RSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEVEQQQQQH 146 (224)
Q Consensus 91 qI~al~eEi~~L-R~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~~~~qq~~q~ 146 (224)
.|..|..++..| +.+..+.++|++..++|.++|.+-..|| .+.-|+-|-
T Consensus 325 rI~eLer~Lq~l~~eR~~eV~rRIe~~~rEekRr~~yeqFl-------~~asQHkqr 374 (589)
T PTZ00332 325 KIQDLERQLQRLGTERFEEVKRRIEENDREEKRRVEYQQFL-------EVAGQHKKL 374 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-------HHHHHHHHH
Confidence 456666665554 5677888999999999999999999999 777776664
No 165
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.13 E-value=2.2e+02 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
-+.|..||..||.+... ...+=..+|.++-.+ +.-=-.-|+.-..||..+.|-+++|+++|..+...++.|
T Consensus 443 c~aL~~rL~~aE~ek~~---l~eeL~~a~~~i~~L----qDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 443 CRALQKRLESAEKEKES---LEEELKEANQNISRL----QDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777664433 334444455444333 122223456666788888888888888888887776655
No 166
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=43.91 E-value=64 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 027350 36 SQAKEELKARLRAAEEQLKQMKSRRKE 62 (224)
Q Consensus 36 ~~S~r~L~~KL~~AE~Ei~eLKkrR~E 62 (224)
++|..+|..|+...+.||..++.-+..
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999988876543
No 167
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=43.81 E-value=69 Score=24.71 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.|++..|.-..+-|+.+.+||.+++++..++|-.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999886655543
No 168
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.60 E-value=2.4e+02 Score=25.20 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRR 60 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR 60 (224)
...+..+|..||.++.+.|..-
T Consensus 179 l~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 179 VKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 5556677777777777776654
No 169
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.12 E-value=1.8e+02 Score=23.53 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 027350 44 ARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATE 97 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~e 97 (224)
.++.....++..++.-...+- .....+...-++|...-+.+..++.-+.+
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~e~~~l~~ 151 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKELEKEIRELQK 151 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443 22333444445555555555555555553
No 170
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.03 E-value=69 Score=32.17 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
+|||.=+--..+||..|.+||...+.++.+|+++..
T Consensus 151 eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~ 186 (542)
T KOG0993|consen 151 EKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKH 186 (542)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhc
Confidence 344444444467788888888888888888875543
No 171
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=42.67 E-value=25 Score=29.05 Aligned_cols=39 Identities=33% Similarity=0.399 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCC-C---chhh---HHHHHHHHHHHHHHHHHHHhhh
Q 027350 22 MSFSLFLASLPK-N---SSQA---KEELKARLRAAEEQLKQMKSRR 60 (224)
Q Consensus 22 lSFalfla~lp~-~---~~~S---~r~L~~KL~~AE~Ei~eLKkrR 60 (224)
+|||+.|+...+ + ++.| ..+|.+|-..|+.-|.+|++.-
T Consensus 8 fSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g 53 (166)
T PF10354_consen 8 FSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG 53 (166)
T ss_pred hHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC
Confidence 799999995333 3 4443 8999999999999999996543
No 172
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=42.42 E-value=1e+02 Score=31.30 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
.+|+.|..+|..|..||..|+..|+.++..+. ++...++-|.+.++.
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~---~~e~~~~q~~~~~~~ 125 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREVS---RQEASREQMLDKISD 125 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 37888888888888888888888877775543 444455555555543
No 173
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.63 E-value=2.1e+02 Score=23.85 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 40 EELKARLRAAEEQLKQ-MKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~e-LKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
..++.+++..+.-|.+ ++.....=.++..-|+.+.| .+++|.+++..+..++..+..+...
T Consensus 15 ~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a--------~~~~le~~~~~~~~~~~~~~~~A~~ 76 (221)
T PF04012_consen 15 NELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMA--------NQKRLERKLDEAEEEAEKWEKQAEL 76 (221)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433332 22333333444445555543 3455666666666666555555443
No 174
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=41.20 E-value=2.6e+02 Score=24.92 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 71 VEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 71 v~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
..|=-.|++.=-...+..+.++.+|..|-+..+++|..+...|..|++..
T Consensus 135 l~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 135 LQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555677777778889999999999999999999999999999998765
No 175
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.91 E-value=93 Score=29.13 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 93 DAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 93 ~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.+|.+|+..|-+++++...++++||.|...-+||..+|
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666677788888888888887777
No 176
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.78 E-value=5.7e+02 Score=28.72 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=6.2
Q ss_pred hhhhhhhhHHHhhhcc
Q 027350 146 HYHQHQEEEEEEFGVC 161 (224)
Q Consensus 146 ~~~~~~e~ee~~~g~c 161 (224)
.|.+--..=+..-.-|
T Consensus 415 q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 415 QYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333444444
No 177
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.66 E-value=1.8e+02 Score=22.84 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH----HHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE----LEDMIG 128 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e----ReEm~~ 128 (224)
+|-..|..+-+.|..|+-.++|++..-..|.+++.. |+++..
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~ 53 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 678889999999999999999999887777777655 555544
No 178
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=40.59 E-value=1.4e+02 Score=22.31 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
...+-|.++|..+.+.+..|+.++.+++.++..++....+
T Consensus 77 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 77 EAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888777666655443
No 179
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.57 E-value=1.3e+02 Score=24.28 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.|-++|+.+..++..|...+.++...-.+|.-|-..-.+.++.+
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777777776655555555555444455544
No 180
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=40.37 E-value=2.5e+02 Score=26.64 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHh-hCCCC
Q 027350 14 QLLRLYIGMSFSLFLA-SLPKN 34 (224)
Q Consensus 14 kla~sYlGlSFalfla-~lp~~ 34 (224)
+-+..|+-++|+|||+ .++..
T Consensus 10 ~~~~~l~~~~~~l~l~~~~~~~ 31 (337)
T PRK14872 10 VRFIVYLIIALGIIVSWSLPRP 31 (337)
T ss_pred hhhHHHHHHHHHHHHHhcCCcH
Confidence 3467788899999988 45544
No 181
>smart00338 BRLZ basic region leucin zipper.
Probab=40.31 E-value=1.2e+02 Score=20.94 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 89 LQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
...|..|..++..|.....++...+..|+.+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544
No 182
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=39.98 E-value=2.1e+02 Score=23.42 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHhHHHHH----HHHHHHHHh
Q 027350 87 RLLQQIDAATEEMASLRSKIDELE-------REKLESDKRVQ----ELEDMIGFM 130 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e-------~~v~~lErEv~----eReEm~~~l 130 (224)
.|.++|..|.+|+.....+|.+.. .+++.+||-|. +|+.+..++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 788899999888766655555444 34455555543 344554444
No 183
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.96 E-value=1.6e+02 Score=22.02 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
.+|-..|..+.+-|..|+.++++++.....|..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~ 39 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKE 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356777888888888888888877776555553
No 184
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.66 E-value=4.2e+02 Score=26.88 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHH--------------HHHhHH
Q 027350 42 LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMAS--------------LRSKID 107 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~--------------LR~kl~ 107 (224)
...++...|..|.+||.--.+-..-+.. ....--++.+..|=+.|+.++..|...+.. .-.+|.
T Consensus 48 ~~~~V~eLE~sL~eLk~q~~~~~~~~~p--a~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ 125 (617)
T PF15070_consen 48 DISRVQELERSLSELKNQMAEPPPPEPP--AGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLA 125 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554443322221 122233456666666777777666443221 123344
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 027350 108 ELEREKLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 108 E~e~~v~~lErEv~eReEm~~~ls 131 (224)
+++.+++++..+...|..|+.-|.
T Consensus 126 ELE~~le~~~e~~~D~~kLLe~lq 149 (617)
T PF15070_consen 126 ELEEELERLQEQQEDRQKLLEQLQ 149 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444445555555555666666553
No 185
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=39.60 E-value=2.4e+02 Score=24.06 Aligned_cols=78 Identities=10% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHh-----------hhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH-----HHhHH
Q 027350 44 ARLRAAEEQLKQMKS-----------RRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASL-----RSKID 107 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKk-----------rR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~L-----R~kl~ 107 (224)
.++..+---|.+++. ++.-|+-..+ ...++-.|.+.=...-+.|.+.+..+.++|++- |+.++
T Consensus 50 ~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~-R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~e 128 (175)
T PRK13182 50 KSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSV-DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREME 128 (175)
T ss_pred HHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHH
Confidence 445555555555544 3344444433 356777777766666666666666666666553 56666
Q ss_pred HHHHHHHHhHHHHHH
Q 027350 108 ELEREKLESDKRVQE 122 (224)
Q Consensus 108 E~e~~v~~lErEv~e 122 (224)
|+..++..||..+.+
T Consensus 129 e~~~~l~~le~~~~~ 143 (175)
T PRK13182 129 EMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 186
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.47 E-value=4.6e+02 Score=27.66 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---HHHHHhhhchhhHHHHHHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANA---RVVEIFASHRNAWQAEEKRLLQQIDAA 95 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANe---KVv~IFAsheqsW~~ErKrLr~qI~al 95 (224)
-..+.+|+...+.+++++|.-=..---.|+ +|+.=|--..+.--++|.||+.+|...
T Consensus 102 E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 102 EEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 345668888888888777654333223333 445555555566666777777666544
No 187
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.41 E-value=2.2e+02 Score=24.78 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 027350 78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~ 133 (224)
.+.+..|-++|..++..|...+..|..+++.++.....++++- +.|+.-|-|.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY---~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY---QTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4455566666666666666666666666666655554444433 3456666443
No 188
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=39.12 E-value=1.7e+02 Score=22.21 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
.=+.|..+|..++.||..|-.++.++...+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888877553
No 189
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=38.93 E-value=87 Score=28.35 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 95 ATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 95 l~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
+.+.+..||.+.++++.+++.++.+...++..+..+..
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~ 74 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAP 74 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555444433
No 190
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.62 E-value=5.7e+02 Score=28.07 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=32.9
Q ss_pred hhchhhHHHH---HHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHh------HHHHHHHHHHHHHhhhh
Q 027350 75 ASHRNAWQAE---EKRLLQQ--IDAATEEMASLRSKIDELEREKLES------DKRVQELEDMIGFMSRR 133 (224)
Q Consensus 75 AsheqsW~~E---rKrLr~q--I~al~eEi~~LR~kl~E~e~~v~~l------ErEv~eReEm~~~lsr~ 133 (224)
+-+||-|+.+ +|+|.+| |..-.+| .-|+.++..|++-++| |=|..+|.||+.-+-|-
T Consensus 361 erqEqErk~qlElekqLerQReiE~qrEE--erkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~re 428 (1118)
T KOG1029|consen 361 ERQEQERKAQLELEKQLERQREIERQREE--ERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNRE 428 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3467777764 3445433 3443444 3345566666554444 44678888988877554
No 191
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.56 E-value=2.5e+02 Score=28.54 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Q 027350 50 EEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGF 129 (224)
Q Consensus 50 E~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~ 129 (224)
+..|..+.+++-+++ .++-.+++.-..+...|+.+.+.++-|-.. =+++.++++-++++.++...++++-..
T Consensus 299 ~~~l~~~~~~~~~lt-------qqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~ 370 (521)
T KOG1937|consen 299 MGKLAELNKQMEELT-------QQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEK 370 (521)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444444443 344555566666666667676666444333 256778887777777777777766655
Q ss_pred h
Q 027350 130 M 130 (224)
Q Consensus 130 l 130 (224)
|
T Consensus 371 L 371 (521)
T KOG1937|consen 371 L 371 (521)
T ss_pred H
Confidence 5
No 192
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=38.27 E-value=4.5e+02 Score=30.55 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=36.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 77 HRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 77 heqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
+-..=..+.|.|.++|+-|++-+..+.+.+.+++....++|.++.+....++
T Consensus 1485 ~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLe 1536 (1930)
T KOG0161|consen 1485 QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALE 1536 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888777777777777777666677766655544433
No 193
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.22 E-value=47 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMK 57 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLK 57 (224)
.+.+..++..+|+|+.+||
T Consensus 50 ~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7777888999999988875
No 194
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=38.22 E-value=89 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 95 ATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 95 l~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
..+.+..|..+|+++-.|+++||...
T Consensus 21 v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 21 VTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678889999999999999888643
No 195
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=38.04 E-value=2e+02 Score=27.14 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 78 RNAWQAEEKRLLQQIDAA--------TEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al--------~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
-++...=|+.+-..++.. ..||..+-++|.|+++++.+|++++++-
T Consensus 262 vna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l 315 (320)
T TIGR01834 262 INALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDL 315 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777776666665 6788888888888888888888886553
No 196
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=37.54 E-value=2.3e+02 Score=23.29 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
...+..++.+.|.|+..|-. .||++-| +.+++...+..+++.+++.-+..+.+.
T Consensus 22 ~~~v~~~l~~LEae~q~L~~--kE~~r~~-------------------~~k~~ae~a~~~L~~~~~~~~~i~e~~ 75 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQ--KEEARYN-------------------EEKQEAEAAEAELAELKELYAEIEEKI 75 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHH--HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH--HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677778888888888864 4555543 234445555555555555555444443
No 197
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=37.32 E-value=5.1e+02 Score=27.19 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAA--------TEEMASLRSKIDELEREKLESDKRVQELEDM 126 (224)
Q Consensus 80 sW~~ErKrLr~qI~al--------~eEi~~LR~kl~E~e~~v~~lErEv~eReEm 126 (224)
-|..|+-|+.-.|..+ .+++..++..+.+++..+..|+.+..+++--
T Consensus 440 ea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~ 494 (775)
T PF10174_consen 440 EALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQ 494 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4677777777776665 5777888888888888888888888888733
No 198
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=37.00 E-value=4.2e+02 Score=27.77 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
+|..+.+.+..|+.-||..+++++.+++.+-.+-..+++=|.+|.-
T Consensus 118 rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 118 RLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777778888888899999998888877777777777777743
No 199
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=36.87 E-value=6e+02 Score=28.05 Aligned_cols=49 Identities=29% Similarity=0.375 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 82 QAEEKRLLQQIDAATEEM-ASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi-~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+.+...|+.+|.-+.++. ..+..++.+.+...+.|++||..-++.+..|
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665554 5555555555555666666666655555555
No 200
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=36.79 E-value=62 Score=27.13 Aligned_cols=32 Identities=16% Similarity=0.480 Sum_probs=23.6
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 72 EIFASHRNAWQAEEKRLLQQIDAATEEMASLRS 104 (224)
Q Consensus 72 ~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~ 104 (224)
.||- -.++|+.-|..+-++|..|.+-|-.|+.
T Consensus 96 ~iY~-d~~aWk~hr~~ID~eIe~Lq~Ki~~LKe 127 (145)
T PF12548_consen 96 VIYQ-DPKAWKDHRLHIDHEIETLQDKIKNLKE 127 (145)
T ss_pred hhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3554 4789999999988888877766655554
No 201
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.74 E-value=3.5e+02 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
...|..++..++.++..|+.-+.
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788888888888876553
No 202
>PRK11281 hypothetical protein; Provisional
Probab=36.67 E-value=4.1e+02 Score=28.93 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHH
Q 027350 51 EQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAA-------TEEMASLRSKIDELE 110 (224)
Q Consensus 51 ~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al-------~eEi~~LR~kl~E~e 110 (224)
.+|.+|++. +...++.|.+-=.-..--.|..+-++...+++++ ..+++..+++++.++
T Consensus 43 ~~l~~~~~~--~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 43 AQLDALNKQ--KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHhhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 455667773 3333334433222233455655555555444444 444555555555444
No 203
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=36.65 E-value=1.6e+02 Score=27.78 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 027350 80 AWQAEEKRLLQQIDAA------TEEMASLRSKIDELEREKLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 80 sW~~ErKrLr~qI~al------~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~ls 131 (224)
.-+-||||||+++.|- .+=|..|-+++..++..-.+|.-++.++.+..+-+.
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4467999999998764 566777777777777777888888888888777663
No 204
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.52 E-value=1.6e+02 Score=23.46 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
+.||..|.++++++.....+.-.+..++
T Consensus 79 e~ei~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 79 EQEIERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3455555555555554443333333333
No 205
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.44 E-value=1.3e+02 Score=23.48 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 027350 38 AKEELKARLRAAEEQLKQMKS 58 (224)
Q Consensus 38 S~r~L~~KL~~AE~Ei~eLKk 58 (224)
+.+.|.+++..++.++.+|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~ 48 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKA 48 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477777888877777777653
No 206
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=36.31 E-value=2.3e+02 Score=22.84 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=15.7
Q ss_pred hhHHHHHhhhchhhHH---HHHHHHHHHHHHHHHH
Q 027350 67 NARVVEIFASHRNAWQ---AEEKRLLQQIDAATEE 98 (224)
Q Consensus 67 NeKVv~IFAsheqsW~---~ErKrLr~qI~al~eE 98 (224)
|..++--+ .-..|. +|..++.++|..+..+
T Consensus 57 ~~~fia~a--nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 57 NAEFIAAA--NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333 455554 4566666666666544
No 207
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=36.21 E-value=1e+02 Score=28.94 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
|......+..++..|..+...++.....+.++..+-++-+..|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333444444555555555555545555555555555555533
No 208
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.19 E-value=3e+02 Score=27.49 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHH
Q 027350 44 ARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAA 95 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al 95 (224)
--|.+.=.++++||++=..=-+.|++... .-..++.-+..+.++|..+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~----eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKA----ENERLQKREQSIDQQIQQA 106 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHH
Confidence 34556666777887777776777776532 3334444444444555433
No 209
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=36.16 E-value=45 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=23.6
Q ss_pred hhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 62 EDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 62 EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
.|-..|---+.+-- .|.++|+.|..|+..|+.||.-
T Consensus 61 ~dl~in~~gialvl-----------~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 61 HELALDWPGIAVAL-----------TLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHcCCCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655554432 4788888888888888777643
No 210
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.96 E-value=2.3e+02 Score=28.53 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
...|+.++...-.+|.+++.-=..+. +....+|..+.++|+.|+.++.......-+
T Consensus 139 A~~La~~fn~~~~~L~~~~~~vn~qi---------------------~~~V~~IN~l~~qIA~LN~qI~~~~g~pNd--- 194 (626)
T PRK08871 139 AKLISQTLNDFHETVRQQKDVTNKKL---------------------DLGVERINQIALEIRDIHRLMMRTPGPHND--- 194 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhcCCCchh---
Confidence 67777888888888877764332222 223457777888888888887643311112
Q ss_pred HHHHHHHHHHHhhhh
Q 027350 119 RVQELEDMIGFMSRR 133 (224)
Q Consensus 119 Ev~eReEm~~~lsr~ 133 (224)
=.-+||.++..||.-
T Consensus 195 LlDqRD~ll~eLS~~ 209 (626)
T PRK08871 195 LMDQHEKLVKELSQY 209 (626)
T ss_pred hHHHHHHHHHHHHhh
Confidence 234799999999875
No 211
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=35.87 E-value=1.1e+02 Score=21.25 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 027350 96 TEEMASLRSKIDELEREK 113 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v 113 (224)
.+|++.|.+-|.|++..+
T Consensus 21 ~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 21 FDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 677777777777776554
No 212
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=35.68 E-value=1.4e+02 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
..+.++|+.|+.|-..||.+++.++...
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888777777554
No 213
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=35.49 E-value=6.3e+02 Score=27.67 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH---------------------HHHh--------------hhchhhH
Q 027350 37 QAKEELKARLRAAEEQLKQMKSRRKEDSKANARV---------------------VEIF--------------ASHRNAW 81 (224)
Q Consensus 37 ~S~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKV---------------------v~IF--------------AsheqsW 81 (224)
.|..+|.+++..+..++.+++.--. ..|.+. .+|= .++...+
T Consensus 102 ~s~~~Leq~l~~~~~~L~~~q~~l~---~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~l 178 (1109)
T PRK10929 102 MSTDALEQEILQVSSQLLEKSRQAQ---QEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTAL 178 (1109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHH
Confidence 5578888888888888777765443 233333 2222 3345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR 103 (224)
.+|+..|..++..+..|..+..
T Consensus 179 qae~~~l~~~~~~l~~~l~s~~ 200 (1109)
T PRK10929 179 QAESAALKALVDELELAQLSAN 200 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhccH
Confidence 7777778788877766654433
No 214
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=35.49 E-value=6.3e+02 Score=27.94 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH-------HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 38 AKEELKARLRAAEEQLKQMKSRRKEDSKANARVV-------EIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 38 S~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv-------~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
|..+|..|+..|+.=|-+|++-| ||--|.+|- -|.-+....-..|.+++|+-...+++..-.+..++-+++
T Consensus 35 s~edlk~r~L~aeniiqdlrser--dalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQ 112 (1265)
T KOG0976|consen 35 SHEDLKKRLLDAENIIQDLRSER--DALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQ 112 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 37789999999999999999877 555555543 244445555566777788888888777777777777666
Q ss_pred HHHHHhHHHHHHHHHHH
Q 027350 111 REKLESDKRVQELEDMI 127 (224)
Q Consensus 111 ~~v~~lErEv~eReEm~ 127 (224)
....++|-+...-.+.|
T Consensus 113 n~c~~lE~ekq~lQ~ti 129 (1265)
T KOG0976|consen 113 NKCLRLEMEKQKLQDTI 129 (1265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65555555554444433
No 215
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.40 E-value=2.5e+02 Score=26.51 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 79 NAWQAEEKRLLQQIDAAT---EEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~---eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
+..+.+|+.+-.+|+.+. ++...|.++..+++..++.+|.+..+
T Consensus 45 ~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 45 EELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555422 12334555666666666666666554
No 216
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.97 E-value=1.7e+02 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
.|+-.|.-||+.|.+.+-.|-..+.++.
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~ 132 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQ 132 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777666555444444444
No 217
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.89 E-value=1.6e+02 Score=28.39 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
.|-..|+++.+.+.+||..|+.++.+++..+.+.|-+...
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667788888888888888888887776555444444333
No 218
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=34.83 E-value=4.9e+02 Score=26.19 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027350 84 EEKRLLQQIDAATEEM 99 (224)
Q Consensus 84 ErKrLr~qI~al~eEi 99 (224)
+++.+..-|..+.+-+
T Consensus 580 ~~~~~~~~~~~~~~~l 595 (657)
T PTZ00186 580 EKENVKTLVAELRKAM 595 (657)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554433
No 219
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=34.66 E-value=5.2e+02 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=11.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhh
Q 027350 113 KLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 113 v~~lErEv~eReEm~~~lsr~ 133 (224)
+.+....+.++++.|..|.+.
T Consensus 398 I~~frqlv~e~QeqIr~LiK~ 418 (632)
T PF14817_consen 398 ILDFRQLVSEKQEQIRALIKG 418 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555655555443
No 220
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=34.47 E-value=1.5e+02 Score=23.29 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E 108 (224)
|.++..+|.+||..||++++.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~ 42 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEH 42 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 445557778888888877763
No 221
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=34.11 E-value=3.1e+02 Score=23.70 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRR 60 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR 60 (224)
++.|-..=...+.+|..++...
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~ 41 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKK 41 (312)
T ss_dssp HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhhHHHHHHHHhcc
Confidence 6666666666777777777665
No 222
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=34.01 E-value=2.9e+02 Score=27.54 Aligned_cols=71 Identities=8% Similarity=0.228 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHhH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE-KLESD 117 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~-v~~lE 117 (224)
...|+.++...-.+|.+++.-=..+ =+....+|..+.++|+.|+.++...... .-+
T Consensus 136 A~~La~~f~~~~~~L~~~~~~~n~~---------------------i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~nd-- 192 (624)
T PRK12714 136 GNSLATRFKQLNGQMDSLSNEVNSG---------------------LTSSVDEVNRLTQQIAKINGTIGSSAQNAAPD-- 192 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh--
Confidence 6677777777777777776432222 2233557788888888888888543211 112
Q ss_pred HHHHHHHHHHHHhhhh
Q 027350 118 KRVQELEDMIGFMSRR 133 (224)
Q Consensus 118 rEv~eReEm~~~lsr~ 133 (224)
-.-+||.++..||.-
T Consensus 193 -LlDqRD~ll~eLS~~ 207 (624)
T PRK12714 193 -LLDQRDALVSKLVGY 207 (624)
T ss_pred -hHHHHHHHHHHHHhh
Confidence 245799999999865
No 223
>PRK11239 hypothetical protein; Provisional
Probab=33.80 E-value=63 Score=29.18 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e 110 (224)
|..+|.+|+.|++.||++|+++.
T Consensus 188 Le~rv~~Le~eva~L~~~l~~l~ 210 (215)
T PRK11239 188 LQARVEALEIEVAELKQRLDSLL 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555443
No 224
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.60 E-value=1.6e+02 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+.|...|..+.+.+..++.+++.+...+.++..
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554444433
No 225
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.59 E-value=2.2e+02 Score=21.74 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=36.6
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHhHHHHHH
Q 027350 76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE----KLESDKRVQE 122 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~----v~~lErEv~e 122 (224)
..-++++..+..+-+.|..-..|+..+|.+|-+|+.. ...-|.|..+
T Consensus 18 ~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~r 68 (79)
T PF08581_consen 18 QEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIAR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888899999999999999999999955 3555655554
No 226
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.44 E-value=1.9e+02 Score=28.89 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDM 126 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm 126 (224)
.|..+|.++..|+..+-+++.+++.+++.+|.|...-+.-
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544455555555555555555444333
No 227
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=33.10 E-value=58 Score=30.66 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 103 RSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 103 R~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|+.|+|+-.++.+|+|++.+-+.-++.|
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l 315 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDL 315 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566666666666555444444
No 228
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.15 E-value=1.1e+02 Score=27.11 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+.|.+.|+.+++-+.++|+.++.+++++
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444
No 229
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=31.98 E-value=27 Score=33.46 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHHHhhhhh-hhhHHHhhhccccc
Q 027350 121 QELEDMIGFMSRRGCEFEVEQQQQQHYHQH-QEEEEEEFGVCESR 164 (224)
Q Consensus 121 ~eReEm~~~lsr~~~~~~~~qq~~q~~~~~-~e~ee~~~g~c~~r 164 (224)
.=|+||+++||.+|.+.-...- +|.|-+. -|----+.|+||+-
T Consensus 262 Yi~~E~~~~Maks~Fgy~~~k~-~~~y~~r~mEYt~iE~~A~GtI 305 (355)
T PF11440_consen 262 YIRSEGLERMAKSLFGYQLSKL-QQKYLQRSMEYTQIELIAVGTI 305 (355)
T ss_dssp --HHHHHHHHHTEEEEEE------GGG-SS---HHHHHHHHCTSE
T ss_pred hhhHHHHHHHhhccceeecHHH-HHHHHHhhhhhheeeeeeecee
Confidence 3589999999999877533222 2233332 34445688999864
No 230
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.93 E-value=6.6e+02 Score=26.87 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHH---HHhhCCCCchhh-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHH
Q 027350 14 QLLRLYIGMSFSL---FLASLPKNSSQA-KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLL 89 (224)
Q Consensus 14 kla~sYlGlSFal---fla~lp~~~~~S-~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr 89 (224)
..+++++--+|+. +-+....+++-+ ...|+++|.....|+..-=-.|+.+.-|- |+|+-.--.+-..|+
T Consensus 48 p~ls~fln~~fSv~~~tSas~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQ-------at~~~~~d~~l~sl~ 120 (797)
T KOG2211|consen 48 PALSSFLNTLFSVQMMTSASKESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQ-------ATEELFEDLELRSLL 120 (797)
T ss_pred ccccccccchhhhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HhhhhhHHHHHHHHH
Confidence 3445555555553 334455555534 88999999999999988777888887774 344444455667777
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 027350 90 QQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e 110 (224)
-.+..+..+|..++.++.+.-
T Consensus 121 ~~v~~lqs~i~riknd~~epy 141 (797)
T KOG2211|consen 121 VKVAELQSEIKRIKNDNKEPY 141 (797)
T ss_pred HHHHHHHHHHHHHHHhhhhHH
Confidence 888888888888888777765
No 231
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.92 E-value=2.6e+02 Score=22.20 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.|-++|..+.++|..|+..+.++...-.+|..|-..-.+.+..+
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444544444444444
No 232
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.90 E-value=2.4e+02 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e 110 (224)
|..+|..+..|+..|..+|..++
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 233
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.57 E-value=1.7e+02 Score=20.74 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
.|..||..++.-+..+|..+..+|..
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58899999999999999999998873
No 234
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.55 E-value=1.3e+02 Score=27.29 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~ 133 (224)
.+-|..||.+-+++...+..||.++.+-+.-+..|.+.
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~ 216 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRS 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666666666666666666666666666666443
No 235
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.49 E-value=2e+02 Score=25.76 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=15.2
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 102 LRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 102 LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+..|.+-++.|+.+||+|+..-..-+..|
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L 112 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSL 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444
No 236
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.42 E-value=2.6e+02 Score=22.03 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSR----RKEDSKANARVV 71 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkr----R~EDAKANeKVv 71 (224)
+..|-.|...+...+..+|.- -.|-+|||.|.-
T Consensus 33 V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 33 VQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666777777776666665542 235566666654
No 237
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.40 E-value=8.1e+02 Score=27.70 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=62.9
Q ss_pred chhh-HHHHHHHHHHHHHHHHHHHhhhhh---hhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 35 SSQA-KEELKARLRAAEEQLKQMKSRRKE---DSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 35 ~~~S-~r~L~~KL~~AE~Ei~eLKkrR~E---DAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
++.| ..-|..+-.++-..+.+|++.=.. +.+-+.-.+.-.-.-=++|+.|.+.....+.-+.+|...|+.++..+.
T Consensus 504 vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 504 VAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555 555555555555555555543211 111111111112233478999999999999999999999999998888
Q ss_pred HHHH---HhHHHHHHHHHHHHHhhhh
Q 027350 111 REKL---ESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 111 ~~v~---~lErEv~eReEm~~~lsr~ 133 (224)
.+|+ .......-|-+.+.+|.|-
T Consensus 584 qrveE~ks~~~~~~s~~kVl~al~r~ 609 (1293)
T KOG0996|consen 584 QRVEEAKSSLSSSRSRNKVLDALMRL 609 (1293)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 8763 3456777888888888754
No 238
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=31.28 E-value=73 Score=23.04 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHhhh
Q 027350 37 QAKEELKARLRAA----EEQLKQMKSRR 60 (224)
Q Consensus 37 ~S~r~L~~KL~~A----E~Ei~eLKkrR 60 (224)
||..+|.+||... |.||++|++|=
T Consensus 8 ls~~eL~~rl~~LD~~ME~Eieelr~RY 35 (49)
T PF11629_consen 8 LSYEELQQRLASLDPEMEQEIEELRQRY 35 (49)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6688899998764 78899998763
No 239
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=31.23 E-value=2.7e+02 Score=24.03 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=45.6
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH-HHHHHHHHHHhhhh
Q 027350 72 EIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR-VQELEDMIGFMSRR 133 (224)
Q Consensus 72 ~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE-v~eReEm~~~lsr~ 133 (224)
+.|--..+++-..|....++|..|..+......++.+++.++..+... ......+..++..+
T Consensus 28 S~~rwk~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 90 (177)
T PF03234_consen 28 SLFRWKHQARHERREERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEADKQEVMESLNEP 90 (177)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhcc
Confidence 345556677777888889999999999999999999988887665554 33446666666443
No 240
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.08 E-value=2e+02 Score=28.04 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=7.3
Q ss_pred HHHHHHhhhhhhhhhh
Q 027350 52 QLKQMKSRRKEDSKAN 67 (224)
Q Consensus 52 Ei~eLKkrR~EDAKAN 67 (224)
=...||.||.|-.--|
T Consensus 215 ~~eklR~r~eeeme~~ 230 (365)
T KOG2391|consen 215 VREKLRRRREEEMERL 230 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555444333
No 241
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.97 E-value=3.2e+02 Score=27.32 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH-Hh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE-KL-ES 116 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~-v~-~l 116 (224)
...|+.++..+-.+|.+++.- +| .+-+....+|..+.++|+.|+.++...+.. .. .-
T Consensus 141 a~~L~~~~n~~~~~L~~~~~~------~~---------------~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~g~~~~~ 199 (613)
T PRK08471 141 TETLTNNIKDTRERLDTLQKK------VN---------------EELKVTVDEINSLGKQIAEINKQIKEVEAGKTLKHA 199 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Confidence 667778888888888777654 22 222334567788888888888888765532 00 00
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027350 117 DKRVQELEDMIGFMSRR 133 (224)
Q Consensus 117 ErEv~eReEm~~~lsr~ 133 (224)
=.=.-+||.++..||.-
T Consensus 200 ndL~DqRD~ll~eLS~~ 216 (613)
T PRK08471 200 NELRDKRDELELTLSKL 216 (613)
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 11235799999999876
No 242
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.72 E-value=65 Score=27.20 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 027350 91 QIDAATEEMASLRSKIDELER 111 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~ 111 (224)
.|.+|..||..||.+|.++..
T Consensus 90 kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 90 KINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999887653
No 243
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=30.46 E-value=1.9e+02 Score=20.23 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDS-KANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDA-KANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
......+|...+..+.++...-.... ..|.--...+.+.-..+...-..+..+|..+..++...|..+.+....++.+|
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777754444444 34555556677777788888888888899999998888888888876655554
Q ss_pred H
Q 027350 118 K 118 (224)
Q Consensus 118 r 118 (224)
.
T Consensus 94 ~ 94 (123)
T PF02050_consen 94 K 94 (123)
T ss_dssp H
T ss_pred H
Confidence 4
No 244
>PLN02943 aminoacyl-tRNA ligase
Probab=30.44 E-value=1.3e+02 Score=31.41 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHH--HHHhHHHHHHHHHHHHHh
Q 027350 81 WQAEEKRLLQQIDAATEEMASLRSKIDE--LERE--KLESDKRVQELEDMIGFM 130 (224)
Q Consensus 81 W~~ErKrLr~qI~al~eEi~~LR~kl~E--~e~~--v~~lErEv~eReEm~~~l 130 (224)
=..|++||..+|..+..||..+..+|.. +..+ .+-+|+|..+..+++..|
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l 940 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKI 940 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999984 3333 244444444444554444
No 245
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=30.42 E-value=1.2e+02 Score=25.38 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKE-DSKANARVV 71 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~E-DAKANeKVv 71 (224)
.+.|..+|..++.||..|.+.+.+ |.+|..++-
T Consensus 59 ~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~ 92 (180)
T PF04678_consen 59 ERQLRKRLEELRQELAPLEKIKQEIDEKAEKRAR 92 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999987776 777765543
No 246
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=30.38 E-value=1.8e+02 Score=26.00 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+=+.|.++|+.+|..+.+++..|+.+++..
T Consensus 15 ~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~ 44 (236)
T PF12017_consen 15 TLKIENKKLKKKIRRLEKELKKLKQKLEKY 44 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888777543
No 247
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.33 E-value=3.6e+02 Score=23.28 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 81 WQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 81 W~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|..+--..-..+..+.+|...|++++++++.....++.-..|-+++-..|
T Consensus 60 ~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 60 FVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555555555555555555555555555554444
No 248
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.25 E-value=95 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e 110 (224)
.|..+|.+|.+||..|.+.+..-.
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467788888888888877776544
No 249
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.19 E-value=3.2e+02 Score=22.67 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHhHHHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRS---KIDELEREKLESDKRVQ 121 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~---kl~E~e~~v~~lErEv~ 121 (224)
..+++.|..||..+-+.|..|.. -.++++..++.|+.+..
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56888888888888777777776 34445444555544443
No 250
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=30.15 E-value=2.1e+02 Score=21.38 Aligned_cols=22 Identities=23% Similarity=0.604 Sum_probs=14.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 027350 77 HRNAWQAEEKRLLQQIDAATEE 98 (224)
Q Consensus 77 heqsW~~ErKrLr~qI~al~eE 98 (224)
+..+|..||..|......+..=
T Consensus 29 q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 29 QEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776666443
No 251
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=30.14 E-value=1.2e+02 Score=23.56 Aligned_cols=41 Identities=29% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----hCCCCch--hhHHHHHHHHHHHH
Q 027350 10 KQLQQLLRLYIGMSFSLFLA-----SLPKNSS--QAKEELKARLRAAE 50 (224)
Q Consensus 10 ~~~~kla~sYlGlSFalfla-----~lp~~~~--~S~r~L~~KL~~AE 50 (224)
+..+-.+.-|+|++.++++. -.|.-.. |.+++-..+|..-|
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA~~rl~~rE 102 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWARREAYRRLERRE 102 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHh
Confidence 33445677888887765544 3554433 66777666665443
No 252
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.05 E-value=1.4e+02 Score=21.85 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E 108 (224)
|..+|..|..||..+++.+..
T Consensus 26 L~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777776666665544
No 253
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.75 E-value=95 Score=27.68 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~ls 131 (224)
++|..+|..+.+||+.|+....+++..+ ..+.---+||+.|.
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L~ela----e~~~~la~~ie~l~ 169 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEELKELA----EHVQYLAEVIERLT 169 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 4466677777777777776666655443 44555667787774
No 254
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.69 E-value=4.5e+02 Score=24.25 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKE 62 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~E 62 (224)
.-.|..|....+.++.+|++.-.|
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445556666666666666665444
No 255
>PRK09039 hypothetical protein; Validated
Probab=29.61 E-value=4.5e+02 Score=24.25 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKL 114 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~ 114 (224)
.+|++||.+|..-++.|.+.|++.+.+-.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665543
No 256
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=29.37 E-value=6.7e+02 Score=26.15 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHH--HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHhH
Q 027350 44 ARLRAAEEQLKQMKSRRKEDSKANARVV--EIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE----REKLESD 117 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv--~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e----~~v~~lE 117 (224)
+|+..||.++..|+ ..=+++|...- -|--.+-+.-.- ..+-..|..|.++|-.+++-+.+.. +.|..||
T Consensus 249 ~ri~~lE~e~e~L~---~ql~~~N~~~~~~~~~~i~~~~~~L--~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le 323 (629)
T KOG0963|consen 249 QRIVFLEREVEQLR---EQLAKANSSKKLAKIDDIDALGSVL--NQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE 323 (629)
T ss_pred HHHHHHHHHHHHHH---HHHHhhhhhhhhccCCchHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888775 45556665321 111111111111 1144566666666666555554443 4467777
Q ss_pred HHHHHHHHHHHHh
Q 027350 118 KRVQELEDMIGFM 130 (224)
Q Consensus 118 rEv~eReEm~~~l 130 (224)
++.-.-...++.|
T Consensus 324 ~~l~~~~~~leel 336 (629)
T KOG0963|consen 324 KELKAKISELEEL 336 (629)
T ss_pred HHHHHHHHHHHHH
Confidence 7776655555555
No 257
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.29 E-value=4.2e+02 Score=29.09 Aligned_cols=58 Identities=24% Similarity=0.392 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 51 EQLKQMKSRRKEDSKANARVVEIFASHRNAWQA--EEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 51 ~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~--ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
.||..||+ |-+|=-.=-|||-+++.--.. |++.+--+|..+.+|+..++.+|.++...
T Consensus 411 ~EIerLK~----dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 411 EEIERLKR----DLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHHH----HHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 444434446999999988444 78888899999999999999998888744
No 258
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.17 E-value=4.1e+02 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=9.1
Q ss_pred HHHHHhHHHHHHHHHHhHHHH
Q 027350 100 ASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 100 ~~LR~kl~E~e~~v~~lErEv 120 (224)
..|.+.+.++...++++|.+.
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~ 91 (429)
T COG0172 71 EELIAEVKELKEKLKELEAAL 91 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHH
Confidence 344444444444444444333
No 259
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.13 E-value=2.5e+02 Score=28.04 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 027350 85 EKRLLQQIDAATEEMASLRSKI 106 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl 106 (224)
++.+.+.|..+..|+..|+.++
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777776
No 260
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=28.99 E-value=4.3e+02 Score=30.63 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhhhhhhhhHH----------HHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 51 EQLKQMKSRRKEDSKANARV----------VEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 51 ~Ei~eLKkrR~EDAKANeKV----------v~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
+-+..|.+-|.+=+++|+.| -.+...++..|..+++-|.+++..+.+=|..|..+.-=+.+.++++-.-.
T Consensus 1057 ~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~ 1136 (1822)
T KOG4674|consen 1057 DLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQS 1136 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444555555555555544 46788999999999999999998888888777776666665555554443
Q ss_pred H
Q 027350 121 Q 121 (224)
Q Consensus 121 ~ 121 (224)
.
T Consensus 1137 ~ 1137 (1822)
T KOG4674|consen 1137 A 1137 (1822)
T ss_pred h
Confidence 3
No 261
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=28.83 E-value=1.7e+02 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLE 115 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~ 115 (224)
.++..|.+++..|+.+++.+.++...
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~ 95 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQA 95 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 262
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=28.79 E-value=4.8e+02 Score=24.23 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCc--h-hh--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHH
Q 027350 10 KQLQQLLRLYIGMSFSLFLASLPKNS--S-QA--KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAE 84 (224)
Q Consensus 10 ~~~~kla~sYlGlSFalfla~lp~~~--~-~S--~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~E 84 (224)
..+..++.-+...|=+|+.|-...+- . ++ +.+|..-+..++.+.. -+-+++|.+=|.+.-.-.-=+.=+.-
T Consensus 71 ~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a----~~~d~yR~~LK~IR~~E~sl~p~R~~ 146 (271)
T PF13805_consen 71 RSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYA----DRLDQYRIHLKSIRNREESLQPSRDR 146 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56777888889999999999877662 2 33 5566666655555543 46788888888888777777777888
Q ss_pred HHHHHHHHHHHHH------HHHHHHHhHHHHHHH
Q 027350 85 EKRLLQQIDAATE------EMASLRSKIDELERE 112 (224)
Q Consensus 85 rKrLr~qI~al~e------Ei~~LR~kl~E~e~~ 112 (224)
|++|..+|..|.. -|..|+..|..+|+.
T Consensus 147 r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae 180 (271)
T PF13805_consen 147 RRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 8889999988842 255555555555433
No 263
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=28.73 E-value=1.4e+02 Score=28.53 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=35.7
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+..|+.+.|=-+|+.|+.-|..-...+|++|.+++..++-|-+
T Consensus 71 ~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 71 FERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3467888888999999999999999999999999877655533
No 264
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.29 E-value=3.8e+02 Score=22.97 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 027350 44 ARLRAAEEQLKQMKSR 59 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkr 59 (224)
.-+....+||.+||+.
T Consensus 27 ~lIksLKeei~emkk~ 42 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKK 42 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666666653
No 265
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=28.27 E-value=1.2e+02 Score=24.51 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=35.3
Q ss_pred hchhhHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHhHHHH-------HHHHHHHHHhhhh
Q 027350 76 SHRNAWQAEEKRLLQQIDAA-------TEEMASLRSKIDELEREKLESDKRV-------QELEDMIGFMSRR 133 (224)
Q Consensus 76 sheqsW~~ErKrLr~qI~al-------~eEi~~LR~kl~E~e~~v~~lErEv-------~eReEm~~~lsr~ 133 (224)
.|=|.|-+|=-.|..+|.+| .+++..+++-+.---..-+++..=. .-++.++++|+||
T Consensus 5 ~hWq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RR 76 (99)
T PF13758_consen 5 YHWQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSRR 76 (99)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 47789999988888888888 4555555544321000001111111 4578899999988
No 266
>PF13514 AAA_27: AAA domain
Probab=28.18 E-value=7.1e+02 Score=26.20 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh-----------------HHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 41 ELKARLRAAEEQLKQMKSRRKEDSKANA-----------------RVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 41 ~L~~KL~~AE~Ei~eLKkrR~EDAKANe-----------------KVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR 103 (224)
.+..++..++.++..++..-.....+-. -.|.-|......+.....++.+++..+..+++.++
T Consensus 407 d~~~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1111)
T PF13514_consen 407 DLEARLQEAEQALEAAERRLAAALAALGPWSGDLDALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLE 486 (1111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777787788777665444433322 34666777777888888888888888888888888
Q ss_pred HhHHHHHHH-----HHHhHHHHHHHHHHHHH
Q 027350 104 SKIDELERE-----KLESDKRVQELEDMIGF 129 (224)
Q Consensus 104 ~kl~E~e~~-----v~~lErEv~eReEm~~~ 129 (224)
.++..+... -+++..--..||..-..
T Consensus 487 ~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~ 517 (1111)
T PF13514_consen 487 ARLRRLAAAGDVPTEEELAAARARRDAAWQL 517 (1111)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 888887743 15555556666665544
No 267
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=28.13 E-value=4e+02 Score=23.08 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
+.++|..+..++..+.+++...++.+...+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 119 (327)
T TIGR02971 88 AARAAAKLFKDVAAQQATLNRLEAELETAQRE 119 (327)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333333
No 268
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=28.02 E-value=4.3e+02 Score=23.47 Aligned_cols=41 Identities=10% Similarity=0.358 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.-+.++..++..|...|++++..+..-+.....-+++++.+
T Consensus 22 ~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~ 62 (243)
T PF07160_consen 22 DTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESS 62 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567788888888899999988877777777778888887
No 269
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.75 E-value=6.9e+02 Score=25.76 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=6.5
Q ss_pred HHHHHHHHhh
Q 027350 21 GMSFSLFLAS 30 (224)
Q Consensus 21 GlSFalfla~ 30 (224)
|-|+|+.+|-
T Consensus 481 g~S~a~~iA~ 490 (771)
T TIGR01069 481 GESYAFEIAQ 490 (771)
T ss_pred CCcHHHHHHH
Confidence 4567777774
No 270
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.43 E-value=7.9e+02 Score=26.34 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 46 LRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 46 L~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
|...+.+|..+...+..=.++|..-..-=......|+.+...|..++.+|++-+..+.++.+.+...
T Consensus 322 l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~ 388 (1201)
T PF12128_consen 322 LARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQK 388 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444434443333333333333357788999999999999999988877777777666543
No 271
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=27.35 E-value=87 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e 110 (224)
+.+++..|..+|..|+.++++++
T Consensus 110 ~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 110 LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555554
No 272
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=27.28 E-value=4e+02 Score=22.89 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027350 40 EELKARLRAAEEQLKQMK 57 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLK 57 (224)
..+...+..|+.++..++
T Consensus 76 ~~~~~~l~~a~a~l~~~~ 93 (334)
T TIGR00998 76 TNAELALAKAEANLAALV 93 (334)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344456666666666554
No 273
>PRK14127 cell division protein GpsB; Provisional
Probab=27.22 E-value=1.8e+02 Score=23.46 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
..+.++..|+..|+.++..++..+.+++..+.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455556666666666666666655555443
No 274
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.73 E-value=4.6e+02 Score=23.41 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKI--------DELE 110 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl--------~E~e 110 (224)
...|..++..++.++.+|+.+-.+| |-.| +.|+.+|.++...|...++++ ....
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~~---~P~v---------------~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~ 277 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPEQ---NPQV---------------PSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQT 277 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC---CCch---------------HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHH
Confidence 6777788888888888777633332 2222 234444444444444444433 3334
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 027350 111 REKLESDKRVQELEDMIG 128 (224)
Q Consensus 111 ~~v~~lErEv~eReEm~~ 128 (224)
...++|++++.=-+.+..
T Consensus 278 ~~~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 278 ADYQRLVLQNELAQQQLK 295 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445667776655444443
No 275
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.73 E-value=3e+02 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027350 85 EKRLLQQIDAATEEMASLRSK 105 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~k 105 (224)
.+.|..+|..+.++|..|.++
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566665555554
No 276
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=26.70 E-value=2.3e+02 Score=21.12 Aligned_cols=21 Identities=19% Similarity=0.223 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHHHHHhHHH
Q 027350 99 MASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 99 i~~LR~kl~E~e~~v~~lErE 119 (224)
+..+..++.++...+..++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~e 117 (120)
T PF11740_consen 97 RAAAEAELAEAEAQAEELEAE 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 277
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.70 E-value=3.7e+02 Score=22.21 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=19.3
Q ss_pred HHHHHHHHHH--------HHHHHHHhHHHHHHHHHHhHHH
Q 027350 88 LLQQIDAATE--------EMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 88 Lr~qI~al~e--------Ei~~LR~kl~E~e~~v~~lErE 119 (224)
+-++|..+.+ ++.+|+.+++.++.+|..||.+
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665544 3456666666666666666554
No 278
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.60 E-value=2.6e+02 Score=20.75 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQELE 124 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~eRe 124 (224)
.+|+-.+++-|.....++++||..+..-+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888889999888888999988877543
No 279
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=26.58 E-value=1.8e+02 Score=24.95 Aligned_cols=57 Identities=7% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHhhhchhhHH----HHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHhHHHHHHHHHH
Q 027350 70 VVEIFASHRNAWQ----AEEKRLLQQIDAATEEMASLRSKIDEL--EREKLESDKRVQELEDM 126 (224)
Q Consensus 70 Vv~IFAsheqsW~----~ErKrLr~qI~al~eEi~~LR~kl~E~--e~~v~~lErEv~eReEm 126 (224)
+.+|+++.-.-|. ..|+.|.+.|+...+++..|+..|++- +...+-+++-...|+.+
T Consensus 215 ~tRia~~~p~~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~~~ 277 (279)
T PRK07417 215 TSRVGGGNPELGVMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQELRPNF 277 (279)
T ss_pred cccccCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5567788888886 577788889999999988888888533 33345666666666654
No 280
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.56 E-value=4.1e+02 Score=22.77 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhc
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASH 77 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsh 77 (224)
+..|...+..........++.=.+=+.-|.+.++-...-
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a 67 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKA 67 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 556666666666666666666666666666666655543
No 281
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.39 E-value=7.1e+02 Score=25.81 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE----KL 114 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~----v~ 114 (224)
..-|..-...-|.||.-|++-|-+= ++--+--+|=.++=.---.||-+|-++.+...-++..|+.-+-+.+.. ++
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L-~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~ 410 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDEL-HKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK 410 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence 5556666667788888888766442 333444566666666667899999999999999999999888877643 68
Q ss_pred HhHHHHHHHHHHHHHhhhh
Q 027350 115 ESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 115 ~lErEv~eReEm~~~lsr~ 133 (224)
.||.-+..-+-++.-+++.
T Consensus 411 slek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 411 SLEKTLRQYDSLIQNITRS 429 (622)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 8999999999999888765
No 282
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.29 E-value=2.4e+02 Score=20.49 Aligned_cols=44 Identities=30% Similarity=0.280 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhC-CCCch--hhHHHHHHHHHHHHHHHHHHHhh
Q 027350 16 LRLYIGMSFSLFLASL-PKNSS--QAKEELKARLRAAEEQLKQMKSR 59 (224)
Q Consensus 16 a~sYlGlSFalfla~l-p~~~~--~S~r~L~~KL~~AE~Ei~eLKkr 59 (224)
++..+||..+.+-+.. +.... +-...|.+||..||.++..-+.+
T Consensus 8 la~~~~L~~~~~~~~a~a~~ltiEqRLa~LE~rL~~ae~ra~~ae~~ 54 (60)
T PF11471_consen 8 LAVAILLASSACSASAQAAPLTIEQRLAALEQRLQAAEQRAQAAEAR 54 (60)
T ss_pred HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544441222 22222 33888889999999988877654
No 283
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=26.21 E-value=2.1e+02 Score=28.21 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
|--.|+++=+.|..|+..||.+|+-+|+.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 444577777777777777777777776543
No 284
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.18 E-value=2.7e+02 Score=21.27 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
.+.|..+|..+..++..|+..+.|....
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~ 35 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEYEQA 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444
No 285
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.17 E-value=2.9e+02 Score=20.86 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh------hhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA------NARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA------NeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
=+.|..||...+.=|.+-+.|+.....+ .=....|+.+|- ......++..|+++|++++..
T Consensus 29 Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l-------------~~~~~~~~~~L~~~l~~l~~e 95 (109)
T PF03980_consen 29 ERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHL-------------APYKKKEREQLNARLQELEEE 95 (109)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999988888888877743321 012233444432 223355555666666666655
Q ss_pred HHHhHHHHHH
Q 027350 113 KLESDKRVQE 122 (224)
Q Consensus 113 v~~lErEv~e 122 (224)
-..|..++.+
T Consensus 96 N~~L~~~i~~ 105 (109)
T PF03980_consen 96 NEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 286
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=25.96 E-value=53 Score=24.87 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=2.2
Q ss_pred HHHHHHHHHHH
Q 027350 91 QIDAATEEMAS 101 (224)
Q Consensus 91 qI~al~eEi~~ 101 (224)
++..+..++..
T Consensus 7 ~~~~l~~~~~~ 17 (144)
T PF04350_consen 7 QIQQLQQELAQ 17 (144)
T ss_dssp -----HHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 287
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.95 E-value=4.6e+02 Score=29.10 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=6.3
Q ss_pred hhhhhhhHHhh
Q 027350 186 ASASKFWTERA 196 (224)
Q Consensus 186 ~sask~W~e~~ 196 (224)
-|.||-++.-.
T Consensus 572 fa~skayarai 582 (1243)
T KOG0971|consen 572 FAESKAYARAI 582 (1243)
T ss_pred HHHhHHHHHHH
Confidence 35666666544
No 288
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.87 E-value=7e+02 Score=25.21 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=51.3
Q ss_pred hCCCCch-----hh-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 30 SLPKNSS-----QA-KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 30 ~lp~~~~-----~S-~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR 103 (224)
.-|.+.+ .+ ...|+.++...-.+|.++++- +|..+ +....+|..+.++|+.|+
T Consensus 122 ~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~------~n~~I---------------~~~V~~IN~l~~qIA~LN 180 (651)
T PRK06945 122 NNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQS------VNTQL---------------TSSVTQINSYTKQIAQLN 180 (651)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 3565533 44 777888888888888887643 22222 234557777888888888
Q ss_pred HhHHHHHHH----HHHhHHHHHHHHHHHHHhhhh
Q 027350 104 SKIDELERE----KLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 104 ~kl~E~e~~----v~~lErEv~eReEm~~~lsr~ 133 (224)
.++...+.. .-+ =.-+||.++..||.-
T Consensus 181 ~~I~~~~~~~g~~~nd---LlDqRD~ll~eLS~~ 211 (651)
T PRK06945 181 DQIAKAESSQGQPPND---LLDQRDQLVSELSKL 211 (651)
T ss_pred HHHHHhhccCCCCcch---hHHHHHHHHHHHHhh
Confidence 888655311 112 234799999999875
No 289
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=25.65 E-value=6.2e+02 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 027350 102 LRSKIDELEREKLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 102 LR~kl~E~e~~v~~lErEv~eReEm~~~ls 131 (224)
++.+|.+....+..|.+|..+-+.+++.|.
T Consensus 74 i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 74 IQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667778888887777777763
No 290
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.65 E-value=2.4e+02 Score=28.55 Aligned_cols=46 Identities=11% Similarity=0.288 Sum_probs=30.1
Q ss_pred hhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 62 EDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 62 EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
|-+.-+.|+..+- ..=...+.|++...++|..|..-|..|+.++..
T Consensus 23 e~a~~qqr~~qms-eev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 23 ESAQWQQRMQQMS-EEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445556665543 333467777777888888887777777776663
No 291
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.45 E-value=1e+02 Score=25.42 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 84 EEKRLLQQIDAATEEM------------ASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 84 ErKrLr~qI~al~eEi------------~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
+.++|+.+|..+..|. +.||+|++.++..++.+..+......-+.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665553 45777777777666665555554443333
No 292
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.35 E-value=3.1e+02 Score=20.91 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 95 ATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 95 l~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.-+++.....+|.+.+..|..||.-|.+-|+-...|
T Consensus 57 k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 57 KYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666666555444
No 293
>PHA02557 22 prohead core protein; Provisional
Probab=25.30 E-value=1.4e+02 Score=27.95 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=33.6
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 027350 99 MASLRSKIDELEREKLESDKRVQELEDMIGFMSRRG 134 (224)
Q Consensus 99 i~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~ 134 (224)
|..|+.+|.|++.++.++-.+...+++-|+.+.|..
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~ 178 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREV 178 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999998875
No 294
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.07 E-value=2.9e+02 Score=20.55 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
.+.|.++|..+...+..|+..+.+.+..
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~ 35 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKA 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 295
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.05 E-value=5.6e+02 Score=23.75 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 027350 40 EELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
..|..+|...+.++.+|+.+=.
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~ 271 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYT 271 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhc
Confidence 3445556666666666654433
No 296
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=24.97 E-value=2e+02 Score=26.03 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 98 EMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 98 Ei~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|++.||+++..+-+|+..||.+-.+|..-+-.|
T Consensus 196 ~~~~lrrQi~klnrRl~~lE~~n~~r~~re~~~ 228 (246)
T PF05644_consen 196 DAASLRRQIIKLNRRLQALEEENKERQQREMIL 228 (246)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHhHHHHH
Confidence 456999999999999999999888776544444
No 297
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=24.97 E-value=1.6e+02 Score=21.82 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKID 107 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~ 107 (224)
.-||+.|..++-.|.+|++..+..+.
T Consensus 9 L~ERNeLK~~v~~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 9 LQERNELKARVFLLEEELAYYKSELL 34 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45888888888888888888876543
No 298
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=24.79 E-value=3e+02 Score=24.87 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchh
Q 027350 103 RSKIDELEREKLESDKRVQELEDMIGFMSRRGCEF 137 (224)
Q Consensus 103 R~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~ 137 (224)
|++=++......=|-....||||+.+.+.+--++.
T Consensus 29 Rk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 29 RKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333344556677889999999987665544
No 299
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.68 E-value=1e+02 Score=22.56 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 027350 88 LLQQIDAATEEMASLRSKI 106 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl 106 (224)
|..+++.|..+|..||++|
T Consensus 70 l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 70 LEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 300
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.66 E-value=2.7e+02 Score=20.05 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
.+-|..|+..+.++...+.+|++.+..
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555444443
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.59 E-value=1.9e+02 Score=28.31 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=50.9
Q ss_pred hhhHHHHHhhhc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchhHHH
Q 027350 66 ANARVVEIFASH-----RNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEVE 140 (224)
Q Consensus 66 ANeKVv~IFAsh-----eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~~~~ 140 (224)
-.+|..+..|+- ----..|||-...+|.++..||..|+++|. +.. -|.....| |...+|.|+||.-.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~-~~~~~L~~~gV~~~~~ 161 (407)
T PRK12726 88 KKEKLLEMLAAGAELAQSTPLLEERKTQEEELSAMRLELAALNRELA--VKM---REEREQNS-DFVKFLKGRGISDTYV 161 (407)
T ss_pred hHHHHHHHHHhhHHHhccCchhhhhhchHHHHHHHHHHHHHHHHHHH--HHh---hhhhcccH-HHHHHHHHcCCCHHHH
Confidence 347887777653 334567788778999999999999999999 222 22222233 8899999999887655
Q ss_pred HHH
Q 027350 141 QQQ 143 (224)
Q Consensus 141 qq~ 143 (224)
..-
T Consensus 162 ~~l 164 (407)
T PRK12726 162 ADF 164 (407)
T ss_pred HHH
Confidence 443
No 302
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=24.54 E-value=2e+02 Score=23.31 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=28.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 027350 74 FASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 74 FAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~ls 131 (224)
|-..-..|..||-+..+-..+..-|+..|+..|.+-. ..+.||+...+..+..++|.
T Consensus 40 ye~~~~~LeqEr~Q~~q~~e~~~Rev~~L~~~L~~~~-~~e~LE~~M~kaqe~~e~Lr 96 (106)
T PF03528_consen 40 YETQWSLLEQERLQWQQYRESEEREVAKLQRRLREGQ-ELENLEKSMKKAQEDEEKLR 96 (106)
T ss_dssp ----------------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-hHHHHHHHHHHHHhHHHHHH
Confidence 4455555777888888888888888999999887755 33789999999999999993
No 303
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.52 E-value=6.8e+02 Score=24.59 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.....++.+.+++..|.+++++++.+.++++.+
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666665555555555433
No 304
>PLN02678 seryl-tRNA synthetase
Probab=24.47 E-value=3.1e+02 Score=26.67 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAAT---EEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~---eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
..+.+|+.+-.+|+.++ +++..|.+++.+++..+..+|.+..+
T Consensus 51 ~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 51 SLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554321 22333444444444444444444443
No 305
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.36 E-value=5.3e+02 Score=23.98 Aligned_cols=21 Identities=19% Similarity=0.502 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027350 39 KEELKARLRAAEEQLKQMKSR 59 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkr 59 (224)
+..|..++..++.+|.+|...
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999888764
No 306
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.30 E-value=1e+03 Score=26.62 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELE 124 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eRe 124 (224)
.|.+.+.++.+.+...|..|-..+.++++.+..++.++-+-.
T Consensus 829 ~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 829 KEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 344444555555555555555555555555444444443333
No 307
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.10 E-value=1.2e+02 Score=25.46 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=38.1
Q ss_pred HhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHH-HHHHHHHhHH
Q 027350 57 KSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATE-EMASLRSKID 107 (224)
Q Consensus 57 KkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~e-Ei~~LR~kl~ 107 (224)
+..|.+|.--=..++.++.. ..|..-.+.|+.+|....+ +...++.+|.
T Consensus 131 ~~~r~~d~ed~~~l~~~~~~--~~~~id~~~l~~~~~~~~e~~~~~i~~rl~ 180 (181)
T PF09970_consen 131 AAGREEDIEDIDILARLIKE--GKIKIDKDYLREHIELFPEEEAESIRKRLR 180 (181)
T ss_pred HhCChhhHHHHHHHHHHHhh--ccceeeHHHHHHHHHhcchhhHHHHHHHhc
Confidence 34455555444667788877 7899999999999999988 8888888874
No 308
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.98 E-value=7.4e+02 Score=25.57 Aligned_cols=16 Identities=13% Similarity=0.545 Sum_probs=6.3
Q ss_pred HHHHHHHHhHHHHHHH
Q 027350 97 EEMASLRSKIDELERE 112 (224)
Q Consensus 97 eEi~~LR~kl~E~e~~ 112 (224)
+|+..++.+|..+..+
T Consensus 639 ~EL~~~~~~l~~l~~s 654 (717)
T PF10168_consen 639 KELERMKDQLQDLKAS 654 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 309
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=23.89 E-value=1.1e+02 Score=27.30 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
++.|+..|+.|+.+=.+ +...++.|+...++
T Consensus 9 ~eew~~Ar~~LL~~EKe----ltR~~dalaa~RR~ 39 (211)
T PF05988_consen 9 REEWLAARDALLAREKE----LTRARDALAAERRR 39 (211)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 57899999999876444 44445555555444
No 310
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.87 E-value=2.9e+02 Score=21.58 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
.|.++|..+...+..|+..+.+++..
T Consensus 17 ~l~~~~~~l~~~~~~l~~~~~e~~~~ 42 (140)
T PRK03947 17 ALQAQIEALQQQLEELQASINELDTA 42 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 311
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.75 E-value=1e+03 Score=26.45 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHhHHHHH
Q 027350 50 EEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKI--------DELEREKLESDKRVQ 121 (224)
Q Consensus 50 E~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl--------~E~e~~v~~lErEv~ 121 (224)
|..|.++..+|+|=-++ ..-|-+++ ..||.|.+.+++-+..|++-+ +.+.+|+++++++..
T Consensus 835 E~~~~~~~~~Rnei~R~----l~~~~~~~-------QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~ 903 (1480)
T COG3096 835 EAEIRQLNSRRNELERA----LSNHENDN-------QQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLD 903 (1480)
T ss_pred HHHHHHHHHHHHHHHHH----HHhhhchH-------HHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHH
Confidence 66778888888775443 44455554 468888888888888887654 345578888888888
Q ss_pred HHHHHHHHhhhhcch
Q 027350 122 ELEDMIGFMSRRGCE 136 (224)
Q Consensus 122 eReEm~~~lsr~~~~ 136 (224)
+-++..-|+...|+.
T Consensus 904 ~a~e~~~fI~qhG~t 918 (1480)
T COG3096 904 EAQEAARFIQQHGNT 918 (1480)
T ss_pred HHHHHHHHHHHhcch
Confidence 888888888887744
No 312
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.65 E-value=4.4e+02 Score=23.37 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~ 133 (224)
++-|.+.|.....++..+|.-++.+.++...+|++..+-..-.+++-.+
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 313
>PF15456 Uds1: Up-regulated During Septation
Probab=23.61 E-value=4.1e+02 Score=21.65 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
.+.|..|+..+..-+.=..++| +-| ......+.+.... .+.-...+...++|++.+.++++|+...+..+|+
T Consensus 31 l~~L~~R~~~lr~kl~le~k~R-dAa---~sl~~l~~~~~~~----~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~ 102 (124)
T PF15456_consen 31 LRSLDSRLEYLRRKLALESKIR-DAA---HSLSRLYSSSSRR----ARFSRESSLKAEEELAESDRKCEELAQELWKLEN 102 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHhcCCCccc----cCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5566678888877777444444 332 3355555555533 2223345666677888888888888777666665
Q ss_pred HH
Q 027350 119 RV 120 (224)
Q Consensus 119 Ev 120 (224)
..
T Consensus 103 R~ 104 (124)
T PF15456_consen 103 RL 104 (124)
T ss_pred HH
Confidence 43
No 314
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.59 E-value=6e+02 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 027350 38 AKEELKARLRAAEEQL 53 (224)
Q Consensus 38 S~r~L~~KL~~AE~Ei 53 (224)
|.++|...|...|+-.
T Consensus 78 s~r~lk~~l~evEeky 93 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKY 93 (302)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3677777776666543
No 315
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.54 E-value=4e+02 Score=21.60 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEI 73 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~I 73 (224)
++-+-.-+..+..++..|.+.|. .+|+-+|..
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~---~l~~Eiv~l 56 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERD---ELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33333444444444444444332 344445443
No 316
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=23.52 E-value=3.9e+02 Score=21.47 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHhhhhcch
Q 027350 116 SDKRVQELEDMIGFMSRRGCE 136 (224)
Q Consensus 116 lErEv~eReEm~~~lsr~~~~ 136 (224)
++.-..+=.+.+..+.+.||.
T Consensus 52 ~~~~~~~~~~~i~~i~~~Gv~ 72 (120)
T PF09969_consen 52 LEELEARLRELIDEIEELGVE 72 (120)
T ss_pred HHHHHHHHHHHHHHHHHcCcE
Confidence 333344445555566555543
No 317
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=23.51 E-value=1.4e+02 Score=31.00 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HH--HHHhHHHHHHHHHHHHHh
Q 027350 81 WQAEEKRLLQQIDAATEEMASLRSKIDELE--RE--KLESDKRVQELEDMIGFM 130 (224)
Q Consensus 81 W~~ErKrLr~qI~al~eEi~~LR~kl~E~e--~~--v~~lErEv~eReEm~~~l 130 (224)
=..|++||..+|..+..||..+..+|..-. .+ .+-+|+|..+..+++..|
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l 980 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEI 980 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999995433 22 244555555555554444
No 318
>PRK00106 hypothetical protein; Provisional
Probab=23.40 E-value=7.7e+02 Score=24.77 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhCC
Q 027350 16 LRLYIGMSFSLFLASLP 32 (224)
Q Consensus 16 a~sYlGlSFalfla~lp 32 (224)
.+..+||-....|.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (535)
T PRK00106 9 VSALIGLVIGYVLISIK 25 (535)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667877777766543
No 319
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=23.40 E-value=3.9e+02 Score=25.63 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
..-+..||.+.+.+|..++..=.+ ++. -..-..+..++..+..++..|.++++-++..++++
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~-~~~---------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGE-LEL---------------NPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-ccc---------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455557888888888776543211 111 11122344555555555555555555555444443
No 320
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=23.34 E-value=6.2e+02 Score=26.15 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHH----------HHHHHHHHhHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAAT----------EEMASLRSKIDE 108 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~----------eEi~~LR~kl~E 108 (224)
+-+++..+..-|-++-+|++ .=+.|.++++- -+|+. .=||.|+.++. +|+..||+|++.
T Consensus 192 RLe~Ll~lL~~Eleil~l~~--~I~~~v~~~~~---k~q~e------~~lreq~~~i~~elg~~~~~~~~~~~~~~~~~~ 260 (784)
T PRK10787 192 RLEYLMAMMESEIDLLQVEK--RIRNRVKKQME---KSQRE------YYLNEQMKAIQKELGEMDDAPDENEALKRKIDA 260 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh---hhhhh------hcchhhhhhhcccccCCCcchhHHHHHHHHHHh
Confidence 44444555554555555443 33334444432 22222 33566666663 456778888877
Q ss_pred HH--HH-HHHhHHHHHHH
Q 027350 109 LE--RE-KLESDKRVQEL 123 (224)
Q Consensus 109 ~e--~~-v~~lErEv~eR 123 (224)
+. .. .+..++|..+-
T Consensus 261 ~~~~~~~~~~~~~e~~~~ 278 (784)
T PRK10787 261 AKMPKEAKEKAEAELQKL 278 (784)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 65 11 35555555443
No 321
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=23.33 E-value=4.5e+02 Score=22.12 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=36.6
Q ss_pred hh-HHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 027350 37 QA-KEELKA-RLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATE 97 (224)
Q Consensus 37 ~S-~r~L~~-KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~e 97 (224)
|. .++++. -+...+.-|.+|++-|.-||. |+-.+|+ .-|--+...|-|..-|.-|++
T Consensus 5 l~kLkE~He~ev~glq~K~~~L~~erc~Daq---rleel~~-knqqLreQqk~L~e~i~~LE~ 63 (120)
T PF10482_consen 5 LNKLKEIHEKEVQGLQNKLLELKKERCLDAQ---RLEELFS-KNQQLREQQKTLHENIKVLEN 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHcccHH---HHHHHHc-ccHHHHHHHHHHHHHHHHHHH
Confidence 56 677775 577788899999999999975 5655555 344334444444444444443
No 322
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.32 E-value=8.4e+02 Score=25.19 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=7.0
Q ss_pred HHHHHHHHhh
Q 027350 21 GMSFSLFLAS 30 (224)
Q Consensus 21 GlSFalfla~ 30 (224)
|=|+|+.+|.
T Consensus 486 g~S~a~~iA~ 495 (782)
T PRK00409 486 GKSNAFEIAK 495 (782)
T ss_pred CCcHHHHHHH
Confidence 4577777775
No 323
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=23.25 E-value=2.2e+02 Score=29.21 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HH--HHHhHHHHHHHHHHHHHh
Q 027350 81 WQAEEKRLLQQIDAATEEMASLRSKIDELE--RE--KLESDKRVQELEDMIGFM 130 (224)
Q Consensus 81 W~~ErKrLr~qI~al~eEi~~LR~kl~E~e--~~--v~~lErEv~eReEm~~~l 130 (224)
=..|.+||..+|..+..||..+..+|..-. .. .+-+|++..+..+++..+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~ 862 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKL 862 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998533 22 244444444444444444
No 324
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.24 E-value=3.1e+02 Score=20.11 Aligned_cols=42 Identities=10% Similarity=0.250 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|-..+..+.-.|..+|+..+++...++.+++-+.+-=.|-+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777888888888888888888888754433333
No 325
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=23.24 E-value=4.4e+02 Score=24.55 Aligned_cols=7 Identities=43% Similarity=0.653 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027350 96 TEEMASL 102 (224)
Q Consensus 96 ~eEi~~L 102 (224)
.+++..|
T Consensus 229 K~~~~~~ 235 (264)
T PF07246_consen 229 KEDMIRL 235 (264)
T ss_pred HHHHHHH
Confidence 3333333
No 326
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.22 E-value=1.7e+02 Score=26.42 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=31.4
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 68 ARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 68 eKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
+++..+|.-- .-+.-=..|+++-..+.++|+.|+++++++++..
T Consensus 167 e~L~~vYP~~--ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL 210 (259)
T PF08657_consen 167 EKLCNVYPLP--GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQL 210 (259)
T ss_pred HHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777644 2233334678888888889999999998888554
No 327
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.13 E-value=4.5e+02 Score=25.57 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
.-+.++++|..--.-+.+|+..++.+|++....++.+|
T Consensus 325 ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e 362 (373)
T COG5019 325 KIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLE 362 (373)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555666666666666655554444
No 328
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=23.05 E-value=4.1e+02 Score=27.82 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhh--hhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRR-KED--SKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR-~ED--AKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
+.-|..+|..++.+|..++++= +++ +||.+.||+ .||++|. .+..++..|.+.|..++
T Consensus 931 ~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve----------~e~~kl~----~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 931 LAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRK----------LNDEKID----ELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHH----------HHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5567788888999998888776 344 578888875 3555544 44555555655555554
No 329
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=23.02 E-value=6.1e+02 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
...+..++...+.++.++.....
T Consensus 55 ~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 55 LQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777776665444
No 330
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.88 E-value=4.2e+02 Score=27.24 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 79 NAWQAEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
..|+.|=+++..++..+..=|..++.|++-
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 331
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.78 E-value=1.7e+02 Score=22.96 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 89 LQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
-.||+-+++.++..|.+|+..+.+.
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999663
No 332
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.74 E-value=7.9e+02 Score=24.69 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHH---HHHHHHHHH----HHHHHHHHHhHHHHHHHH-
Q 027350 42 LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEK---RLLQQIDAA----TEEMASLRSKIDELEREK- 113 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErK---rLr~qI~al----~eEi~~LR~kl~E~e~~v- 113 (224)
+.+-+...++-+..||-.=.-|.+- + -|+-..||. ||-.|++.+ .+||+.|...|+-|+.+|
T Consensus 272 Ik~~q~~Leesye~Lke~~krdy~f-------i---~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 272 IKETQALLEESYERLKEQIKRDYKF-------I---AETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555565544444432 1 134444443 355555554 789999999999999875
Q ss_pred -HHhHHHHHHHHHHHHHhhhhcchhHHHHHHHHh
Q 027350 114 -LESDKRVQELEDMIGFMSRRGCEFEVEQQQQQH 146 (224)
Q Consensus 114 -~~lErEv~eReEm~~~lsr~~~~~~~~qq~~q~ 146 (224)
..-||-. .=+|+.+-+.-|=...+..||+||-
T Consensus 342 YQsyERaR-dIqEalEscqtrisKlEl~qq~qqv 374 (455)
T KOG3850|consen 342 YQSYERAR-DIQEALESCQTRISKLELQQQQQQV 374 (455)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444322 2223333332222233666665554
No 333
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.69 E-value=5.8e+02 Score=23.08 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=4.6
Q ss_pred HHHHHHhHHHHH
Q 027350 99 MASLRSKIDELE 110 (224)
Q Consensus 99 i~~LR~kl~E~e 110 (224)
+..||.+|.+++
T Consensus 211 L~~lr~eL~~~~ 222 (325)
T PF08317_consen 211 LEALRQELAEQK 222 (325)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 334
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.62 E-value=1e+03 Score=26.05 Aligned_cols=6 Identities=0% Similarity=-0.086 Sum_probs=3.1
Q ss_pred hhhcch
Q 027350 200 WQDVQY 205 (224)
Q Consensus 200 wQDvqy 205 (224)
|..++|
T Consensus 1037 ~~l~~~ 1042 (1353)
T TIGR02680 1037 LDRAAN 1042 (1353)
T ss_pred HHHHHh
Confidence 455555
No 335
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.52 E-value=1.1e+02 Score=30.85 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
|.|..|+.+|.+++..||++|+-..
T Consensus 28 ~~L~~ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 28 KALQAQLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566666666666666666665444
No 336
>PRK11239 hypothetical protein; Provisional
Probab=22.49 E-value=1.5e+02 Score=26.82 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhh
Q 027350 46 LRAAEEQLKQMKSR 59 (224)
Q Consensus 46 L~~AE~Ei~eLKkr 59 (224)
+...|..+.+|-.+
T Consensus 130 v~~Ve~~L~~L~~r 143 (215)
T PRK11239 130 MAEVESTLEQLANR 143 (215)
T ss_pred HHHHHHHHHHHHhc
Confidence 45667777777654
No 337
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.28 E-value=5.3e+02 Score=22.48 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
.|..+-..+.+|+..|..+++.++..+..|+.+.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555554444444444433
No 338
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.28 E-value=3.2e+02 Score=21.97 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.1
Q ss_pred HHhHHHHHHHHHHhHHHHHH
Q 027350 103 RSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 103 R~kl~E~e~~v~~lErEv~e 122 (224)
-+.|.+++..+..++++..+
T Consensus 61 ~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 61 YEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445444444433
No 339
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=22.27 E-value=2.1e+02 Score=23.51 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHH--HHHHHHhHHHHHH---H-HHHhHHHHHHHHHHHH
Q 027350 87 RLLQQIDAATEE--MASLRSKIDELER---E-KLESDKRVQELEDMIG 128 (224)
Q Consensus 87 rLr~qI~al~eE--i~~LR~kl~E~e~---~-v~~lErEv~eReEm~~ 128 (224)
.|...|+.|+.+ |+.|.++|++-+. . ..+=++-+..|..+++
T Consensus 35 ~L~~~isrLE~~G~i~~l~~~l~~d~~l~~~~~~aH~~y~~~R~~ll~ 82 (139)
T PF04417_consen 35 YLVKAISRLEAEGGIAELEERLAEDEELAEAYRRAHRRYAALRWSLLS 82 (139)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466677777554 6666666655332 2 3455556666776663
No 340
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.27 E-value=2.6e+02 Score=18.94 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 79 NAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
+.=+.....|..++..|..+...|+.++..++
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666666666666666666666654
No 341
>KOG4376 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.23 E-value=30 Score=30.17 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=8.5
Q ss_pred hhhcccccCC
Q 027350 215 IYHMKHFVAR 224 (224)
Q Consensus 215 ~y~~kh~v~r 224 (224)
-||+.|||||
T Consensus 52 kyNarH~vp~ 61 (161)
T KOG4376|consen 52 KYNARHFVPE 61 (161)
T ss_pred CCccccccCH
Confidence 4799999985
No 342
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=22.21 E-value=2.2e+02 Score=24.31 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARV 70 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKV 70 (224)
..+...++...+.||..|++...-.-.-|.||
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkv 208 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKKEKQFNRKV 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 88888999999999999999887665555554
No 343
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.06 E-value=42 Score=25.32 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~ 127 (224)
.|...+..|..|+..|+.+++++...+..+......-..++
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
No 344
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.00 E-value=3.4e+02 Score=20.20 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
-.+-|..+|..+.+.+..|...+..+...+..+....
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 88 AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777776666666666666655555443
No 345
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.93 E-value=3.5e+02 Score=20.61 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
...-+.|.++|..+...+..|+..+++++...+.|+
T Consensus 5 ~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 5 AAELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=21.93 E-value=5.4e+02 Score=23.79 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHHHHHHHH-HHhHHHHHHHHHHHHHhhhhc
Q 027350 96 TEEMASLRSKIDELEREK-LESDKRVQELEDMIGFMSRRG 134 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v-~~lErEv~eReEm~~~lsr~~ 134 (224)
..=|+.|.-||.|+++|. +-..-=.--|+|||.-|..++
T Consensus 192 l~Wir~LQ~~~~dQQ~RLQeSFDtILdnRKELiRclqq~~ 231 (239)
T PF15546_consen 192 LRWIRGLQHQLVDQQNRLQESFDTILDNRKELIRCLQQRA 231 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccc
Confidence 445788889999999885 555666778999999885443
No 347
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.91 E-value=5.2e+02 Score=22.31 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKI 106 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl 106 (224)
++..+...|..+..||+.||..+
T Consensus 256 ~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 256 EREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHH
Confidence 33333334444444444444333
No 348
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.78 E-value=3.4e+02 Score=25.32 Aligned_cols=46 Identities=30% Similarity=0.500 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH----HHHHHHHHHhhhh
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRV----QELEDMIGFMSRR 133 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv----~eReEm~~~lsr~ 133 (224)
|..+|+.+++-|..|-.++.+++..+..+++.. ..-+++.+...|+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 445555555555555555555555444443332 2334444444444
No 349
>COG3771 Predicted membrane protein [Function unknown]
Probab=21.71 E-value=1e+02 Score=24.98 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCC---chhhHHHHHHHHHHHHHHHHHHHhh
Q 027350 11 QLQQLLRLYIGMSFSLFLASLPKN---SSQAKEELKARLRAAEEQLKQMKSR 59 (224)
Q Consensus 11 ~~~kla~sYlGlSFalfla~lp~~---~~~S~r~L~~KL~~AE~Ei~eLKkr 59 (224)
++.-|++.-||+.|++.-..-... +-.|.+.|..++..++.|+.++-.-
T Consensus 40 ~LSTLla~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr~~~q~~~~t~~ 91 (97)
T COG3771 40 RLSTLLATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKRLENQLSDVTVV 91 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceee
Confidence 466778888888887765443332 2345667777777777777655443
No 350
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=21.69 E-value=3.2e+02 Score=19.72 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.+|.++.+.+..++.++-+..-..=.++.|
T Consensus 7 ~el~~l~~qm~e~kK~~idk~Ve~G~iTqe 36 (59)
T PF10925_consen 7 KELKALYKQMLELKKQIIDKYVEAGVITQE 36 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 456666666666666665554333333333
No 351
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.64 E-value=3.4e+02 Score=21.69 Aligned_cols=52 Identities=25% Similarity=0.474 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhc
Q 027350 16 LRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASH 77 (224)
Q Consensus 16 a~sYlGlSFalfla~lp~~~~~S~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsh 77 (224)
+..-+|+-+.+++..+..........|...|..++.++.+-| ..|..-|+..
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk----------~~V~~HF~~t 55 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYK----------QEVNDHFAQT 55 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 344556666666655433322225677777778887777766 3577777754
No 352
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.59 E-value=6.7e+02 Score=23.39 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 81 WQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 81 W~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+..|=..+.........|++.++.++.++..+.-+++-+-.+-..-+.++
T Consensus 205 ~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 205 KKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555566666777777777766666666655555555554
No 353
>PHA02109 hypothetical protein
Probab=21.58 E-value=2.6e+02 Score=25.49 Aligned_cols=55 Identities=29% Similarity=0.338 Sum_probs=29.9
Q ss_pred hhhHHHHHhhhchhhHHHHHH----HH------HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 66 ANARVVEIFASHRNAWQAEEK----RL------LQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 66 ANeKVv~IFAsheqsW~~ErK----rL------r~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
+--+.+.|||+-|.-=..++. +| +.||.+|+.-|..|-+.+..++..+..+-.+|
T Consensus 159 ~KP~~v~~~AsTE~ID~~~~~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 159 AKPKAVEIHASTERIDQVERSHTGENLEGLTDKLKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred CCccceeccccHHHHHHHHhccchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999998866555553 33 44454444444444444444444444443333
No 354
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.41 E-value=4e+02 Score=25.16 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=46.2
Q ss_pred HHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 55 QMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 55 eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+|++...+=+++-+|+. .-+|-|..|+.-+..|.+.++++|.+.+.+...+-.-|.+|-..+..+
T Consensus 242 ~L~kl~~~i~~~lekI~-----------sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIE-----------SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555543 346789999999999999999999999977766666666666555555
No 355
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=21.29 E-value=5.7e+02 Score=22.54 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH--------------Hh
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR--------------SK 105 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR--------------~k 105 (224)
.+|-.||...+.+.+....- =.++ ..-+..-+...+.=..|+..|-+....+..++..|+ .+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~---L~e~-e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEA---LEES-EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655443221 1111 111122222333333445555555555544444444 45
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 106 IDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 106 l~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+.+....|..|+.++.+++.=-..|
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~l 108 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEEL 108 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666555555443333
No 356
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.26 E-value=3.7e+02 Score=21.37 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
++.|-.+|..+++-|..|-+++.+++..+..|.+|-.+-
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888887776666665543
No 357
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.24 E-value=9e+02 Score=24.81 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKR-------LLQQIDAATEEMASLRSKIDELER 111 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKr-------Lr~qI~al~eEi~~LR~kl~E~e~ 111 (224)
+..+..++..+..++.+|.....+-++.=++....+..+-..+..+..+ +..+|..+..+...+.+++.+...
T Consensus 331 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (908)
T COG0419 331 LEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQE 410 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566666665555555555455555555554444444432 333333444444444444444443
Q ss_pred H
Q 027350 112 E 112 (224)
Q Consensus 112 ~ 112 (224)
.
T Consensus 411 ~ 411 (908)
T COG0419 411 E 411 (908)
T ss_pred H
Confidence 3
No 358
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.22 E-value=7.1e+02 Score=23.56 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHH---HH-HHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAAT---EE-MASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~---eE-i~~LR~kl~E~e~~v~~lErEv~e 122 (224)
..+.+|+.+-.+|+.++ ++ +..|.++..+++.++..+|.+..+
T Consensus 48 ~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 48 ELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665532 12 455555555555556666555544
No 359
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.19 E-value=6.7e+02 Score=23.25 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhh
Q 027350 46 LRAAEEQLKQMKSR 59 (224)
Q Consensus 46 L~~AE~Ei~eLKkr 59 (224)
+..+..+|..|+..
T Consensus 277 v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 277 VIATKREIAQLEEQ 290 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 360
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.14 E-value=1.2e+02 Score=27.44 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhh---------hhhhhhhhHHHHHhhhch
Q 027350 46 LRAAEEQLKQMKSRR---------KEDSKANARVVEIFASHR 78 (224)
Q Consensus 46 L~~AE~Ei~eLKkrR---------~EDAKANeKVv~IFAshe 78 (224)
++..|..++.|-.|+ +|--|--.|-+-.|++.-
T Consensus 128 v~e~e~~Le~La~R~~gplvv~l~RepGkREsRymhLf~g~v 169 (215)
T COG3132 128 VAEVEHTLERLANREDGPLVVRLAREPGKRESRYMHLFSGEV 169 (215)
T ss_pred HHHHHHHHHHHhcCCCCceeeecCCCCCcchhhhhhhhcchh
Confidence 445666777777665 344455566677776653
No 361
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.07 E-value=3.1e+02 Score=20.12 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e 110 (224)
.|..+|+.|..+|..||..+...+
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555556555555444333
No 362
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=21.02 E-value=32 Score=26.78 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
++-+|-..|.-|..++..|+.++++++.+..+|++...+
T Consensus 7 ~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 7 EKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344566777788888888888888888887777776655
No 363
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.93 E-value=4.8e+02 Score=21.53 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027350 87 RLLQQID 93 (224)
Q Consensus 87 rLr~qI~ 93 (224)
+|+++|+
T Consensus 84 ~L~~eie 90 (177)
T PF07798_consen 84 KLQREIE 90 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 364
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.77 E-value=5.3e+02 Score=21.93 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|.-+...+.+.-..||.+.++++.+...++.=+.+=+.|.+.+
T Consensus 89 lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi 131 (159)
T PF05384_consen 89 LQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566677777777766666655555555544433
No 365
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=20.70 E-value=1e+03 Score=25.37 Aligned_cols=37 Identities=24% Similarity=0.505 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 77 HRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 77 heqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
|-|.|-.||..|+.-|..|.++=..|..-++=+.-||
T Consensus 236 ~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRv 272 (739)
T PF07111_consen 236 HSQAWEPEREELLETVQHLQEDRDALQATAELLQVRV 272 (739)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888666666666555444
No 366
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.67 E-value=4.1e+02 Score=20.60 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027350 91 QIDAATEE 98 (224)
Q Consensus 91 qI~al~eE 98 (224)
++..++.+
T Consensus 50 Rl~~lE~~ 57 (106)
T PF10805_consen 50 RLQALETK 57 (106)
T ss_pred HHHHHHHH
Confidence 33333333
No 367
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=20.62 E-value=49 Score=27.62 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=17.4
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHhHHHHHHHHHHHHHh
Q 027350 68 ARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE-------REKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 68 eKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e-------~~v~~lErEv~eReEm~~~l 130 (224)
+.|....+.|=+.=..+|++|+.++..|..|-..||.++..-. ..+-.|+.++..-+.|...+
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~ 76 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIK 76 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhc
Confidence 3566667777778888888888888888888888887765443 44577777777766665444
No 368
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.60 E-value=3.7e+02 Score=20.08 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~ 114 (224)
+.|=..|++++.++..|=+.|..|.+-...+|+
T Consensus 20 ~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 20 KSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777666665554
No 369
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.52 E-value=3.2e+02 Score=19.31 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
.+..+|..+..++..++.+-.+++..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444444443
No 370
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.50 E-value=2.3e+02 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 96 TEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
+.=+..-|++|+.+++++.+||-.
T Consensus 65 ~qvl~rtR~kl~~Leari~~LEar 88 (103)
T COG2960 65 RQVLLRTREKLAALEARIEELEAR 88 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555677777777777766643
No 371
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=20.40 E-value=5.1e+02 Score=21.63 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027350 40 EELKARLRAAEEQLKQMKSRR 60 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR 60 (224)
.++...+..++.++.+++...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~ 80 (322)
T TIGR01730 60 DDYQLALQAALAQLAAAEAQL 80 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665543
No 372
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.39 E-value=4.9e+02 Score=21.41 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=19.7
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 68 ARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 68 eKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
.+|+.-.-+.-.++..|.|||.....++.+=+..|+.-|.+
T Consensus 46 ~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 46 AKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555554444444433
No 373
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.35 E-value=7.7e+02 Score=27.04 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHH-------HHHHHHHHHhHHH
Q 027350 51 EQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAA-------TEEMASLRSKIDE 108 (224)
Q Consensus 51 ~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al-------~eEi~~LR~kl~E 108 (224)
.++.++++....+ +..++..+ ..-.+|..+.++...++..+ -.+++.++++|+.
T Consensus 30 ~~l~~~~~~~~~~---~k~~~~~l-~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 30 QELEQAKAAKTPA---QAEIVEAL-QSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHhhcCCChh---hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4555566643322 44555655 44567777777666665555 4555556666554
No 374
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.25 E-value=3.3e+02 Score=27.68 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+|-++..+|..|.+|+..||.++++.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444455555555555555554444
No 375
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=20.12 E-value=4.1e+02 Score=20.37 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHhHHHHHHHHHHHHHhh
Q 027350 87 RLLQQIDAATEEMASLRSKIDELERE-----------KLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~-----------v~~lErEv~eReEm~~~ls 131 (224)
.|..+-++++-|.-.||.+|+..+.. +.-.-|-..|||++...|+
T Consensus 12 ~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 12 TLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 45667788888888888888877622 2223344456777776663
No 376
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.09 E-value=1.8e+02 Score=29.31 Aligned_cols=86 Identities=15% Similarity=0.245 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCCch---hh--HHHHHHHHHHHHHHHHHHHhhhhhhhh-h---------hhHHHHHhhhchhhHHHHHH
Q 027350 22 MSFSLFLASLPKNSS---QA--KEELKARLRAAEEQLKQMKSRRKEDSK-A---------NARVVEIFASHRNAWQAEEK 86 (224)
Q Consensus 22 lSFalfla~lp~~~~---~S--~r~L~~KL~~AE~Ei~eLKkrR~EDAK-A---------NeKVv~IFAsheqsW~~ErK 86 (224)
+.|+|.+..+|.-.+ .| ...|...|....+|+.+|++.=.---. | +.-++.-..+. ..|
T Consensus 5 ~~~alv~~al~~~a~a~a~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~-a~~----- 78 (514)
T PF11336_consen 5 LITALVAGALPGAAMAAATADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSD-AQA----- 78 (514)
T ss_pred HHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcc-ccc-----
Confidence 567888767777522 33 899999999999999999876322111 1 01011111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
..--+++..+|.+++-+...|+.|+..
T Consensus 79 ------~~T~d~~~~~~qqiAn~~lKv~~l~da 105 (514)
T PF11336_consen 79 ------GLTNDDATEMRQQIANAQLKVESLEDA 105 (514)
T ss_pred ------ccChHHHHHHHHHHHhhhhhHHHHhhH
Confidence 233567777888888877777777643
No 377
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.02 E-value=4.1e+02 Score=25.16 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 77 HRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 77 heqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
-||.=++|+--|.-+++.|+..=..||.++.+++..|..|
T Consensus 242 YRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 242 YRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777888888888777778888888888765443
Done!