Query 027350
Match_columns 224
No_of_seqs 32 out of 34
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v4h_A NF-kappa-B essential mo 89.5 1.7 5.7E-05 34.4 8.0 69 39-107 26-107 (110)
2 3mq9_A Bone marrow stromal ant 88.8 3.5 0.00012 35.8 10.3 54 59-116 416-469 (471)
3 2w6b_A RHO guanine nucleotide 87.6 1.9 6.5E-05 30.8 6.5 45 83-130 3-47 (56)
4 2dfs_A Myosin-5A; myosin-V, in 85.9 12 0.00041 37.8 13.5 32 87-118 1020-1051(1080)
5 3na7_A HP0958; flagellar bioge 83.0 19 0.00064 29.9 12.6 21 42-62 58-78 (256)
6 2l5g_B Putative uncharacterize 81.3 3.7 0.00013 27.8 5.4 35 87-121 6-40 (42)
7 3ol1_A Vimentin; structural ge 80.7 17 0.00057 27.7 11.9 40 94-133 66-105 (119)
8 2efr_A General control protein 80.5 22 0.00075 28.9 11.8 43 89-131 69-111 (155)
9 1ci6_A Transcription factor AT 79.0 9.6 0.00033 26.3 7.1 43 85-127 18-60 (63)
10 2akf_A Coronin-1A; coiled coil 77.5 2.5 8.6E-05 27.2 3.4 29 93-121 2-30 (32)
11 3ghg_A Fibrinogen alpha chain; 76.9 19 0.00066 35.0 10.8 22 40-61 60-81 (562)
12 3na7_A HP0958; flagellar bioge 76.8 11 0.00039 31.2 8.2 25 86-110 56-80 (256)
13 1uii_A Geminin; human, DNA rep 75.9 7 0.00024 29.6 6.0 34 83-116 46-79 (83)
14 2xdj_A Uncharacterized protein 75.6 7.6 0.00026 28.7 6.1 37 87-123 24-60 (83)
15 3iv1_A Tumor susceptibility ge 75.6 22 0.00076 26.4 9.4 61 39-110 13-73 (78)
16 3iv1_A Tumor susceptibility ge 75.3 15 0.00053 27.2 7.7 49 85-133 13-68 (78)
17 3k29_A Putative uncharacterize 73.7 14 0.00047 31.1 7.9 49 53-102 105-154 (169)
18 2v71_A Nuclear distribution pr 72.3 43 0.0015 28.1 12.1 22 92-113 90-111 (189)
19 3qne_A Seryl-tRNA synthetase, 69.5 13 0.00045 34.8 7.6 27 40-66 36-62 (485)
20 2yy0_A C-MYC-binding protein; 69.2 9.4 0.00032 26.0 5.0 28 91-118 20-47 (53)
21 1wle_A Seryl-tRNA synthetase; 68.6 40 0.0014 31.4 10.6 48 80-127 88-146 (501)
22 1deb_A APC protein, adenomatou 68.4 26 0.00091 24.8 7.2 45 86-130 6-50 (54)
23 1joc_A EEA1, early endosomal a 67.9 16 0.00056 27.9 6.6 36 82-117 3-38 (125)
24 3q8t_A Beclin-1; autophagy, AT 67.8 35 0.0012 25.3 9.4 43 79-121 14-56 (96)
25 1ses_A Seryl-tRNA synthetase; 66.3 27 0.00094 31.4 8.8 64 39-119 30-93 (421)
26 1jnm_A Proto-oncogene C-JUN; B 66.1 27 0.00092 23.6 6.8 33 90-122 22-54 (62)
27 4dzn_A Coiled-coil peptide CC- 64.8 10 0.00035 24.4 4.1 23 87-109 6-28 (33)
28 3k29_A Putative uncharacterize 64.3 64 0.0022 27.1 10.4 15 99-113 80-94 (169)
29 2dq0_A Seryl-tRNA synthetase; 63.7 30 0.001 31.6 8.6 28 39-66 33-60 (455)
30 1deq_A Fibrinogen (alpha chain 63.1 51 0.0017 30.8 10.0 59 52-120 92-157 (390)
31 3hnw_A Uncharacterized protein 61.1 46 0.0016 26.1 8.2 37 87-123 79-115 (138)
32 3oja_B Anopheles plasmodium-re 60.9 87 0.003 27.6 11.8 23 97-119 544-566 (597)
33 1i84_S Smooth muscle myosin he 60.6 36 0.0012 34.1 9.2 10 13-22 825-834 (1184)
34 2wt7_B Transcription factor MA 60.1 53 0.0018 24.8 9.0 55 50-116 20-74 (90)
35 3swk_A Vimentin; cytoskeleton, 59.7 44 0.0015 24.3 7.4 34 97-130 49-82 (86)
36 2wvr_A Geminin; DNA replicatio 59.5 29 0.00098 30.1 7.2 43 84-130 116-158 (209)
37 1kd8_A GABH AIV, GCN4 acid bas 58.4 15 0.0005 24.3 4.1 29 100-128 4-32 (36)
38 2yy0_A C-MYC-binding protein; 57.9 13 0.00044 25.4 3.9 23 84-106 27-49 (53)
39 2dgc_A Protein (GCN4); basic d 57.4 24 0.0008 24.5 5.3 38 86-123 26-63 (63)
40 1kd8_B GABH BLL, GCN4 acid bas 56.8 23 0.0008 23.3 4.8 29 100-128 4-32 (36)
41 2dfs_A Myosin-5A; myosin-V, in 56.7 35 0.0012 34.5 8.4 22 89-110 983-1004(1080)
42 4etp_A Kinesin-like protein KA 56.5 33 0.0011 30.7 7.5 30 91-120 4-33 (403)
43 1wle_A Seryl-tRNA synthetase; 56.4 43 0.0015 31.2 8.4 22 44-65 77-98 (501)
44 3jsv_C NF-kappa-B essential mo 56.3 40 0.0014 25.9 6.8 68 40-110 5-88 (94)
45 1l8d_A DNA double-strand break 54.4 57 0.0019 23.4 12.3 44 78-121 59-102 (112)
46 1dip_A Delta-sleep-inducing pe 53.7 3.4 0.00012 31.2 0.5 27 95-121 13-39 (78)
47 2oxj_A Hybrid alpha/beta pepti 53.2 24 0.00081 23.0 4.4 29 100-128 4-32 (34)
48 2v71_A Nuclear distribution pr 53.1 1E+02 0.0034 25.9 10.4 82 40-121 45-126 (189)
49 3vkg_A Dynein heavy chain, cyt 53.0 1.8E+02 0.0063 33.3 13.8 19 178-196 2118-2136(3245)
50 3qne_A Seryl-tRNA synthetase, 52.6 59 0.002 30.4 8.7 49 79-127 50-101 (485)
51 3a7p_A Autophagy protein 16; c 52.4 82 0.0028 25.9 8.6 30 91-120 97-126 (152)
52 3lss_A Seryl-tRNA synthetase; 52.2 72 0.0025 29.8 9.2 28 39-66 39-66 (484)
53 3c3g_A Alpha/beta peptide with 52.0 25 0.00086 22.8 4.3 29 100-128 3-31 (33)
54 1l8d_A DNA double-strand break 51.6 45 0.0015 23.9 6.3 40 91-130 4-43 (112)
55 3c3f_A Alpha/beta peptide with 51.0 26 0.0009 22.8 4.3 29 100-128 4-32 (34)
56 1i84_S Smooth muscle myosin he 50.3 97 0.0033 31.0 10.3 6 91-96 928-933 (1184)
57 3nmd_A CGMP dependent protein 49.3 54 0.0019 24.0 6.3 26 105-130 34-59 (72)
58 1jnm_A Proto-oncogene C-JUN; B 49.2 40 0.0014 22.7 5.4 46 83-128 2-53 (62)
59 4dzn_A Coiled-coil peptide CC- 49.0 36 0.0012 21.9 4.6 26 91-116 3-28 (33)
60 3lss_A Seryl-tRNA synthetase; 48.6 1.3E+02 0.0043 28.2 10.2 76 52-127 21-134 (484)
61 2wq1_A General control protein 48.0 32 0.0011 22.3 4.3 28 101-128 4-31 (33)
62 3tnu_B Keratin, type II cytosk 46.4 57 0.0019 24.7 6.4 37 82-118 35-71 (129)
63 3azd_A Short alpha-tropomyosin 46.0 5.2 0.00018 25.6 0.4 32 92-123 6-37 (37)
64 2v66_B Nuclear distribution pr 46.0 1E+02 0.0035 23.9 9.8 20 39-58 5-24 (111)
65 3swk_A Vimentin; cytoskeleton, 45.8 84 0.0029 22.8 9.2 45 86-130 3-51 (86)
66 3ra3_B P2F; coiled coil domain 45.6 18 0.00061 22.6 2.8 17 86-102 10-26 (28)
67 3bbp_D GRIP and coiled-coil do 45.4 14 0.00048 27.4 2.7 47 39-103 17-63 (71)
68 4emc_A Monopolin complex subun 44.8 1.1E+02 0.0038 26.0 8.4 31 83-113 27-57 (190)
69 3hrn_A Transient receptor pote 44.5 88 0.003 22.7 8.1 47 84-130 7-53 (64)
70 4e61_A Protein BIM1; EB1-like 44.3 72 0.0025 24.8 6.7 47 88-139 9-55 (106)
71 3tnu_A Keratin, type I cytoske 44.1 1E+02 0.0035 23.3 10.0 64 39-109 40-103 (131)
72 2dq0_A Seryl-tRNA synthetase; 44.1 1.8E+02 0.006 26.5 10.3 48 80-127 49-99 (455)
73 3uul_A Utrophin; spectrin repe 44.1 74 0.0025 21.7 8.4 33 96-128 77-109 (118)
74 1a93_B MAX protein, coiled coi 43.9 45 0.0015 21.6 4.6 30 88-117 5-34 (34)
75 3m48_A General control protein 43.2 28 0.00095 22.6 3.5 28 101-128 4-31 (33)
76 1wlq_A Geminin; coiled-coil; 2 42.8 49 0.0017 25.0 5.4 44 83-130 38-81 (83)
77 2r2v_A GCN4 leucine zipper; co 42.6 55 0.0019 21.3 4.8 28 101-128 5-32 (34)
78 3uun_A Dystrophin; triple heli 41.3 81 0.0028 21.4 8.7 33 96-128 77-109 (119)
79 2wt7_A Proto-oncogene protein 41.2 82 0.0028 21.4 7.1 43 85-127 18-60 (63)
80 2dq3_A Seryl-tRNA synthetase; 41.1 45 0.0015 30.0 5.8 28 39-66 32-59 (425)
81 3he4_A Synzip6; heterodimeric 40.4 63 0.0021 22.7 5.2 27 52-78 4-30 (56)
82 3tnu_B Keratin, type II cytosk 40.1 1.2E+02 0.004 22.9 10.9 64 39-109 38-101 (129)
83 1go4_E MAD1 (mitotic arrest de 40.1 45 0.0016 25.6 4.9 25 87-111 16-40 (100)
84 2d4y_A HAP1, flagellar HOOK-as 39.9 2E+02 0.0068 25.5 11.2 83 30-133 58-148 (463)
85 2i1j_A Moesin; FERM, coiled-co 39.9 8.7 0.0003 36.0 1.0 61 42-106 368-428 (575)
86 2hy6_A General control protein 39.8 50 0.0017 21.5 4.3 28 101-128 5-32 (34)
87 1joc_A EEA1, early endosomal a 39.5 1E+02 0.0034 23.4 6.8 38 79-116 7-44 (125)
88 1yzm_A FYVE-finger-containing 39.1 47 0.0016 22.9 4.4 23 96-118 27-49 (51)
89 2v4h_A NF-kappa-B essential mo 38.0 1.5E+02 0.005 23.4 7.6 14 117-130 86-99 (110)
90 2l5g_B Putative uncharacterize 37.8 64 0.0022 21.8 4.8 28 86-113 12-39 (42)
91 1t2k_D Cyclic-AMP-dependent tr 37.5 91 0.0031 20.8 7.1 37 89-125 21-57 (61)
92 3he5_A Synzip1; heterodimeric 35.9 19 0.00064 24.8 1.9 18 91-108 32-49 (49)
93 1uo4_A General control protein 35.2 38 0.0013 22.0 3.2 28 101-128 5-32 (34)
94 2zxx_A Geminin; coiled-coil, c 34.9 99 0.0034 23.0 5.9 29 82-110 33-61 (79)
95 2eqb_B RAB guanine nucleotide 34.9 72 0.0025 24.5 5.3 18 114-131 33-50 (97)
96 4fm3_A Uncharacterized hypothe 34.8 1E+02 0.0035 23.5 6.1 37 88-124 62-98 (98)
97 3ghg_C Fibrinogen gamma chain; 34.5 2.7E+02 0.0092 25.7 10.0 79 42-123 50-131 (411)
98 2dgc_A Protein (GCN4); basic d 34.5 1E+02 0.0034 21.3 5.6 38 83-120 10-53 (63)
99 1avy_A Fibritin, gpwac M; bact 34.3 58 0.002 24.3 4.5 40 84-123 2-41 (74)
100 3tnu_A Keratin, type I cytoske 34.2 63 0.0021 24.6 4.9 37 82-118 37-73 (131)
101 1ses_A Seryl-tRNA synthetase; 34.1 1.3E+02 0.0046 26.9 7.8 51 80-130 46-97 (421)
102 3kqg_A Langerin, C-type lectin 34.0 79 0.0027 23.4 5.4 33 88-120 4-39 (182)
103 2bni_A General control protein 33.9 40 0.0014 22.0 3.1 28 101-128 5-32 (34)
104 3lay_A Zinc resistance-associa 33.2 2E+02 0.0067 23.5 9.3 17 46-62 66-82 (175)
105 1z0k_B FYVE-finger-containing 33.0 52 0.0018 24.0 4.0 22 96-117 45-66 (69)
106 3bas_A Myosin heavy chain, str 32.7 1.4E+02 0.0047 21.5 8.1 37 84-120 36-72 (89)
107 3sjb_C Golgi to ER traffic pro 32.0 61 0.0021 24.8 4.4 27 86-112 52-78 (93)
108 1gmj_A ATPase inhibitor; coile 32.0 1.1E+02 0.0036 23.1 5.7 34 85-118 46-79 (84)
109 3v86_A De novo design helix; c 31.6 54 0.0019 20.3 3.3 23 87-109 4-26 (27)
110 3sja_C Golgi to ER traffic pro 30.8 50 0.0017 23.8 3.6 22 86-107 35-56 (65)
111 2wg5_A General control protein 30.7 62 0.0021 24.2 4.3 23 87-109 11-33 (109)
112 3v1a_A Computational design, M 30.5 89 0.003 21.3 4.6 19 96-114 26-44 (48)
113 3qh9_A Liprin-beta-2; coiled-c 30.3 1.3E+02 0.0045 22.6 5.9 29 91-119 48-76 (81)
114 2yo3_A General control protein 29.9 86 0.0029 27.8 5.7 42 87-128 220-261 (268)
115 2dq3_A Seryl-tRNA synthetase; 29.7 1.4E+02 0.0048 26.8 7.1 43 80-122 48-93 (425)
116 3a7p_A Autophagy protein 16; c 29.6 1.7E+02 0.0058 24.0 7.0 23 88-110 66-88 (152)
117 3ol1_A Vimentin; structural ge 29.6 1.8E+02 0.0062 21.9 8.5 17 82-98 19-35 (119)
118 1ci6_A Transcription factor AT 29.3 1.4E+02 0.0047 20.4 5.9 27 86-112 26-52 (63)
119 3bas_A Myosin heavy chain, str 28.7 1.6E+02 0.0056 21.1 10.0 73 39-122 16-88 (89)
120 2wt7_B Transcription factor MA 28.1 1.9E+02 0.0065 21.7 7.1 58 39-115 30-87 (90)
121 3hnw_A Uncharacterized protein 28.1 2.1E+02 0.0073 22.3 10.9 36 84-119 97-132 (138)
122 3ajw_A Flagellar FLIJ protein; 27.8 1.8E+02 0.006 21.2 11.5 72 41-112 30-103 (150)
123 3l4f_A RHO guanine nucleotide 27.2 1.7E+02 0.0057 21.0 5.8 42 86-130 3-44 (61)
124 1grj_A GREA protein; transcrip 27.0 1.5E+02 0.0053 23.0 6.2 12 47-58 12-23 (158)
125 4etp_A Kinesin-like protein KA 26.5 2.6E+02 0.0088 24.9 8.2 43 85-130 12-54 (403)
126 1nlw_A MAD protein, MAX dimeri 26.5 72 0.0025 22.8 3.8 22 86-107 57-78 (80)
127 4fla_A Regulation of nuclear P 26.3 2.5E+02 0.0084 22.4 8.1 32 99-130 70-105 (152)
128 1lwu_C Fibrinogen gamma chain; 26.2 1.9E+02 0.0065 25.7 7.3 36 86-121 15-50 (323)
129 1hjb_A Ccaat/enhancer binding 26.0 2E+02 0.0069 21.2 7.1 38 91-128 37-74 (87)
130 2xv5_A Lamin-A/C; structural p 25.9 1.7E+02 0.0058 20.9 5.7 28 82-109 4-31 (74)
131 1fxk_A Prefoldin; archaeal pro 25.9 1.7E+02 0.0059 20.4 5.7 38 83-120 65-102 (107)
132 3hi2_B Motility quorum-sensing 25.7 9.6 0.00033 29.4 -1.0 21 182-205 55-75 (101)
133 2wuj_A Septum site-determining 25.3 58 0.002 22.0 3.0 19 91-109 35-53 (57)
134 1fxk_C Protein (prefoldin); ar 25.3 2E+02 0.007 21.1 6.6 37 81-117 6-42 (133)
135 1gk7_A Vimentin; intermediate 24.9 1.4E+02 0.0049 19.1 4.7 28 96-123 5-32 (39)
136 1avy_A Fibritin, gpwac M; bact 24.9 1.6E+02 0.0056 21.9 5.5 33 86-118 11-43 (74)
137 1nlw_A MAD protein, MAX dimeri 24.9 1.1E+02 0.0038 21.8 4.6 22 89-110 53-74 (80)
138 2ve7_A Kinetochore protein HEC 24.7 1.2E+02 0.0041 26.2 5.6 23 91-113 186-208 (315)
139 3cvf_A Homer-3, homer protein 24.5 1.6E+02 0.0053 21.7 5.4 50 82-131 5-55 (79)
140 3ghg_A Fibrinogen alpha chain; 24.5 5E+02 0.017 25.3 11.5 32 87-118 114-152 (562)
141 2eqb_B RAB guanine nucleotide 24.2 2.4E+02 0.0083 21.5 8.2 16 46-61 7-22 (97)
142 4dnd_A Syntaxin-10, SYN10; str 24.1 2.5E+02 0.0086 21.7 7.3 52 79-130 48-117 (130)
143 4dk0_A Putative MACA; alpha-ha 23.8 3E+02 0.01 22.5 9.3 19 40-58 66-84 (369)
144 2w83_C C-JUN-amino-terminal ki 23.8 87 0.003 23.4 3.9 38 80-117 27-64 (77)
145 3pjs_K KCSA, voltage-gated pot 23.8 1.4E+02 0.0048 22.8 5.3 23 90-112 138-160 (166)
146 1z0j_B FYVE-finger-containing 23.7 1.2E+02 0.0041 21.6 4.4 21 96-116 34-54 (59)
147 2wg5_A General control protein 23.6 81 0.0028 23.5 3.8 16 94-109 11-26 (109)
148 1hjb_A Ccaat/enhancer binding 23.5 1E+02 0.0035 22.8 4.3 26 83-108 50-75 (87)
149 1go4_E MAD1 (mitotic arrest de 23.5 1.4E+02 0.0047 22.9 5.1 24 97-120 12-35 (100)
150 2e7s_A RAB guanine nucleotide 23.4 2.3E+02 0.0079 22.7 6.6 11 80-90 43-53 (135)
151 3uux_B Mitochondrial division 23.1 3.6E+02 0.012 23.7 8.2 47 81-127 154-214 (242)
152 3u06_A Protein claret segregat 23.1 1.5E+02 0.005 26.8 6.0 65 91-164 4-68 (412)
153 3gp4_A Transcriptional regulat 23.0 2.5E+02 0.0085 21.3 9.4 45 86-130 84-128 (142)
154 1gax_A Valrs, valyl-tRNA synth 22.7 1.6E+02 0.0056 28.9 6.7 29 80-108 797-825 (862)
155 4efa_E V-type proton ATPase su 22.7 3E+02 0.01 22.1 11.9 42 50-94 14-56 (233)
156 1t3j_A Mitofusin 1; coiled coi 22.7 2E+02 0.0069 21.9 5.9 13 86-98 39-51 (96)
157 2w83_C C-JUN-amino-terminal ki 22.7 1.8E+02 0.0063 21.7 5.5 33 88-120 42-74 (77)
158 2w6b_A RHO guanine nucleotide 22.3 2.1E+02 0.0073 20.3 5.8 36 86-121 13-48 (56)
159 2ve7_C Kinetochore protein NUF 22.1 35 0.0012 28.9 1.7 40 84-123 149-188 (250)
160 1m1j_C Fibrinogen gamma chain; 22.0 4.6E+02 0.016 24.0 9.1 36 86-121 94-129 (409)
161 3hh0_A Transcriptional regulat 22.0 1.9E+02 0.0064 22.1 5.7 32 86-117 83-114 (146)
162 3mq7_A Bone marrow stromal ant 21.9 3.1E+02 0.011 22.0 10.7 54 63-120 48-101 (121)
163 3vkg_A Dynein heavy chain, cyt 21.7 6.2E+02 0.021 29.2 11.5 27 91-117 2036-2062(3245)
164 1r8e_A Multidrug-efflux transp 21.6 2E+02 0.007 22.7 6.0 31 86-116 82-112 (278)
165 3q8t_A Beclin-1; autophagy, AT 21.5 2.5E+02 0.0084 20.7 9.6 28 190-217 57-84 (96)
166 2jo8_A Serine/threonine-protei 21.4 86 0.0029 21.7 3.2 23 37-59 10-36 (51)
167 2oto_A M protein; helical coil 21.0 2.9E+02 0.0098 21.2 8.1 40 91-130 58-98 (155)
168 3gpv_A Transcriptional regulat 20.8 2.8E+02 0.0095 21.0 7.2 50 69-118 81-130 (148)
169 1nkp_A C-MYC, MYC proto-oncoge 20.8 1.2E+02 0.0042 21.8 4.2 29 82-110 58-86 (88)
170 3plt_A Sphingolipid long chain 20.7 4.1E+02 0.014 22.9 15.8 94 10-107 37-141 (234)
171 3nmd_A CGMP dependent protein 20.4 2.6E+02 0.0088 20.4 7.2 43 88-130 24-66 (72)
172 1gu4_A CAAT/enhancer binding p 20.3 2.5E+02 0.0086 20.3 5.8 32 93-124 39-70 (78)
173 1aa0_A Fibritin, gpwac E; bact 20.1 2.4E+02 0.0082 22.4 5.9 44 80-123 40-83 (113)
174 2k48_A Nucleoprotein; viral pr 20.1 3.2E+02 0.011 21.4 7.4 17 96-112 81-97 (107)
No 1
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.49 E-value=1.7 Score=34.44 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHhhhhhhhhhhh---HH------HHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027350 39 KEELKARLRAAEEQLKQ----MKSRRKEDSKANA---RV------VEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSK 105 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~e----LKkrR~EDAKANe---KV------v~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~k 105 (224)
+..|..+|..||+.|.. ....+.++++-++ +| |.||-+.-.+=+.-|-||..++..|...++.|..+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 88999999999987754 3334456666544 22 45666666666666666666666666666666555
Q ss_pred HH
Q 027350 106 ID 107 (224)
Q Consensus 106 l~ 107 (224)
+.
T Consensus 106 ~~ 107 (110)
T 2v4h_A 106 FN 107 (110)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.81 E-value=3.5 Score=35.84 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=41.4
Q ss_pred hhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 59 RRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 59 rR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
.|..-+-+|--||-.-+|-+.- .-.-..+|..++.||..|+.+|.++++.|+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 416 VEAQAATANHTVMALMASLDAE----KAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778899999998876532 11222478999999999999999999988775
No 3
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=87.58 E-value=1.9 Score=30.82 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.++|.|..-+=+|.+++.+|+. |.+.....+|+|..-|.+|+.-+
T Consensus 3 veEKSlVDtVYaLkDqV~eL~q---e~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 3 LGSKSLVDTVYALKDEVQELRQ---DNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999987 55566688888988888887665
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.89 E-value=12 Score=37.76 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
.|...|..|.+|...||.+++|++..+...++
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666655444433
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.03 E-value=19 Score=29.85 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 027350 42 LKARLRAAEEQLKQMKSRRKE 62 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKkrR~E 62 (224)
+...+...+.+|.+++.+...
T Consensus 58 ~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 58 LKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=81.34 E-value=3.7 Score=27.85 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
.|.++|+-+-.||+--+.|+++++.+...||+.+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 58899999999999999999999999988887653
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.69 E-value=17 Score=27.71 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 027350 94 AATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 94 al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~ 133 (224)
.++++|..||..+++.-...-+||..+.--.|=|.||.++
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999888777777888888888888888543
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.50 E-value=22 Score=28.95 Aligned_cols=43 Identities=28% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 027350 89 LQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMS 131 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~ls 131 (224)
.++-+...+.|..|..+|.+.+.|++..||.|...+.-|+.|-
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778899999999999999999999999999888887773
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.96 E-value=9.6 Score=26.32 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~ 127 (224)
|.+-+.++..+..++..|..+-.+++..+..|+.|+.--..|+
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888888888888888888887766665
No 10
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=77.48 E-value=2.5 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 93 DAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 93 ~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
.-|++|++.|..-+.+++.|+.+||.-|+
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998765
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.90 E-value=19 Score=34.98 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 027350 40 EELKARLRAAEEQLKQMKSRRK 61 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~ 61 (224)
+.|..+|.....++.++.+-|.
T Consensus 60 rDltkrINELKnqLEdlsKnsK 81 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNK 81 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhch
Confidence 4455667777777777744443
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.81 E-value=11 Score=31.15 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
+.+..+|..+..+|..+++++...+
T Consensus 56 ~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 56 LALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 13
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=75.86 E-value=7 Score=29.59 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
.|=++|..+|..+.+||+.|+..+.+++..++.+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999988776554
No 14
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=75.60 E-value=7.6 Score=28.67 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
.|..+|..+..||+.||.+++++.-.+..+.+.-..+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999998877766544443
No 15
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.57 E-value=22 Score=26.38 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
++.|..++.++.+||.-||+-..|=-+--.|+-.|. .+|-++-..+...|..|++|.+|++
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi-----------~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV-----------TRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777666555555555555 3566666666677777777776665
No 16
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.33 E-value=15 Score=27.24 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHhHHHHHHHHHHHHHhhhh
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELE-------REKLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e-------~~v~~lErEv~eReEm~~~lsr~ 133 (224)
|+||+..+.-...||..||.--+|++ ..+.+|++|..+-+.-|..|.+.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888899999998888877 34688888888888888877554
No 17
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=73.73 E-value=14 Score=31.09 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHH-HHHHHHH
Q 027350 53 LKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAA-TEEMASL 102 (224)
Q Consensus 53 i~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al-~eEi~~L 102 (224)
...|..+|.+=.+| -+-..=|..|++-|..|.++++.+...+ ++|+.++
T Consensus 105 ~q~Le~ar~el~qA-rke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~ 154 (169)
T 3k29_A 105 SKELERAEVELTKR-RKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQL 154 (169)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455566666666 4445556999999999999999887766 5565554
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.28 E-value=43 Score=28.13 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 027350 92 IDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 92 I~al~eEi~~LR~kl~E~e~~v 113 (224)
|..|.+||..||.....+..++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444443
No 19
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.54 E-value=13 Score=34.80 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
-.|-.+...+..++.+|+++|+.=+|.
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~ 62 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKE 62 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666665555543
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.24 E-value=9.4 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.308 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
.+++|..|...|+.|++++..+++++..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444433
No 21
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=68.65 E-value=40 Score=31.43 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAAT-----------EEMASLRSKIDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~-----------eEi~~LR~kl~E~e~~v~~lErEv~eReEm~ 127 (224)
..+.+|+.+-.+|+.++ +++..|.+++.+++..++++|.+..+-++-+
T Consensus 88 ~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 88 SLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777654 3566777777777777777777666644433
No 22
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=68.44 E-value=26 Score=24.76 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
..|.+|+..|..|=.-||+.|.+--..+..||-|..--+|++..|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 369999999999999999999998888999999998888887665
No 23
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=67.93 E-value=16 Score=27.86 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
+.||..|.+++-..+.|+..|+.++.++...++..+
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 368888888888888888888888888887765443
No 24
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.84 E-value=35 Score=25.33 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 79 NAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
+..+.|+.+|.+++..|..|=..|.+.|..++.....|+++..
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~ 56 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEA 56 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3467788899999999999988888888888877766666543
No 25
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=66.35 E-value=27 Score=31.36 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+-.|-.+...+..++.+|+++|+.-+|.=.+ ++- ..+.+|..++..|+.++.+++....+++.
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVPK-----APP------------EEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777778888888888777765111 111 12345555555666666666555555544
Q ss_pred H
Q 027350 119 R 119 (224)
Q Consensus 119 E 119 (224)
+
T Consensus 93 ~ 93 (421)
T 1ses_A 93 R 93 (421)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.10 E-value=27 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
..|..|..++..|...-.++...|..|..|+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555543
No 27
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=64.81 E-value=10 Score=24.43 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~ 109 (224)
-|.++|.+|..||+.|.=.++-+
T Consensus 6 alkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666665444433
No 28
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=64.33 E-value=64 Score=27.09 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=12.0
Q ss_pred HHHHHHhHHHHHHHH
Q 027350 99 MASLRSKIDELEREK 113 (224)
Q Consensus 99 i~~LR~kl~E~e~~v 113 (224)
|+.||.++.+.+..|
T Consensus 80 I~llrErea~lEqkV 94 (169)
T 3k29_A 80 IKVVAIQLSEEEEKV 94 (169)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888888665
No 29
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=63.68 E-value=30 Score=31.60 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
+-.|-.+...+..++.+|+++|+.=+|.
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666555544
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.09 E-value=51 Score=30.77 Aligned_cols=59 Identities=7% Similarity=0.136 Sum_probs=42.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 52 QLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAAT-------EEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 52 Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~-------eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
.|.++=+-|..+++-|+.|+.=|... |+++|..|. -.|+.|+..|+++.-.+++||-.+
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~e----------Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINED----------LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888888877753 455554442 267888888888888888888776
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.07 E-value=46 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
.|.++|..+.+|+..|...|....-..+.++++..+.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333343333333
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.94 E-value=87 Score=27.56 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHH
Q 027350 97 EEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 97 eEi~~LR~kl~E~e~~v~~lErE 119 (224)
+|+..|+.++++++.++.++.+|
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHH
Confidence 34444444444444444433333
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=60.65 E-value=36 Score=34.07 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 027350 13 QQLLRLYIGM 22 (224)
Q Consensus 13 ~kla~sYlGl 22 (224)
+.....|+.+
T Consensus 825 Q~~~r~~~~~ 834 (1184)
T 1i84_S 825 QYNVRSFMNV 834 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344445444
No 34
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.11 E-value=53 Score=24.77 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 50 EEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 50 E~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
.+||..||.+|+-= | | ..|| ..=|+|=..+++.|+.|...|..+++.+.....++
T Consensus 20 ~eev~~lKq~RRtl-K-N----RgyA------q~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 20 KDEVIRLKQKRRTL-K-N----RGYA------QSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHH-H-H----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-h-h----hHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777776531 1 1 1122 12345555777777777777777666665443333
No 35
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.69 E-value=44 Score=24.30 Aligned_cols=34 Identities=24% Similarity=0.588 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 97 EEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 97 eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
++|..||.-+.++-...-+||..+.--.+=|.||
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444433334443
No 36
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=59.49 E-value=29 Score=30.06 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|=++|..+|..+.+||+.|+..+.+++..++.+. ---+||+.|
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q----~la~vi~~l 158 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ----YMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4456788888999999999988888887665443 334566666
No 37
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.39 E-value=15 Score=24.28 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=23.5
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 100 ASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 100 ~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
..|-+|++++..+..+||.||.+-++|++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45677888888888889999988888775
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.89 E-value=13 Score=25.38 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKI 106 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl 106 (224)
|-..|+.++..|.+++..|+++|
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.44 E-value=24 Score=24.52 Aligned_cols=38 Identities=32% Similarity=0.281 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
.|=..+|..|..++..|...-.+++..+..|-.++++|
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~~ 63 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445667777777777777777777676666665543
No 40
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=56.78 E-value=23 Score=23.30 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.4
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 100 ASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 100 ~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
..|-+|++++-.+..+||.||.+-.+|++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45677888888888888888888888775
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=56.71 E-value=35 Score=34.48 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 027350 89 LQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E~e 110 (224)
..+|..|.+|+..|+..+..+.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 42
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.54 E-value=33 Score=30.70 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
+|.++++||..|+.++++++..++.++.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 33 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGM 33 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444443
No 43
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=56.45 E-value=43 Score=31.20 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 027350 44 ARLRAAEEQLKQMKSRRKEDSK 65 (224)
Q Consensus 44 ~KL~~AE~Ei~eLKkrR~EDAK 65 (224)
.+...+..++.+|+++|+.=+|
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk 98 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTE 98 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 44
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=56.27 E-value=40 Score=25.94 Aligned_cols=68 Identities=24% Similarity=0.461 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHhhhhhhhhhhh---HH------HHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 40 EELKARLRAAEEQL-------KQMKSRRKEDSKANA---RV------VEIFASHRNAWQAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 40 r~L~~KL~~AE~Ei-------~eLKkrR~EDAKANe---KV------v~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR 103 (224)
..|..+|..||+-+ .+|| .++++-++ +| |.||-+.=.+=++-|-||..++..|...++.|.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lk---e~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLK---EEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666666666543 4444 36666552 22 456666666666666666666666666666666
Q ss_pred HhHHHHH
Q 027350 104 SKIDELE 110 (224)
Q Consensus 104 ~kl~E~e 110 (224)
.++..+.
T Consensus 82 ~q~~~L~ 88 (94)
T 3jsv_C 82 REFNKLK 88 (94)
T ss_dssp HTTC---
T ss_pred HHHHHHH
Confidence 6655443
No 45
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.40 E-value=57 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
...|...-.....+|..+.+++..|+.++.+++..+..++.+..
T Consensus 59 ~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 59 DEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666665555543
No 46
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=53.65 E-value=3.4 Score=31.17 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 95 ATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 95 l~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
+.+|+..|+.++.|++.++..||.|-.
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998754
No 47
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=53.21 E-value=24 Score=23.03 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 100 ASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 100 ~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
..|-.|++++-.+-.+|+.||.+-.+|++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45777888888888999999998888764
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.10 E-value=1e+02 Score=25.86 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.+|-.-|..++..+++|+..-..=-.-.+..-.=|.....-+...=..|..+|..+..+...|..+|-+++..-..||+.
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34445556666666666554322221222222223333334444567788888888888888888888888776666665
Q ss_pred HH
Q 027350 120 VQ 121 (224)
Q Consensus 120 v~ 121 (224)
..
T Consensus 125 ~R 126 (189)
T 2v71_A 125 KR 126 (189)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 49
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.00 E-value=1.8e+02 Score=33.26 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=12.6
Q ss_pred CCCchhhhhhhhhhhHHhh
Q 027350 178 FGFSSEFLASASKFWTERA 196 (224)
Q Consensus 178 ~gf~~~f~~sask~W~e~~ 196 (224)
+.|+.+|-....+-|...-
T Consensus 2118 G~f~~~~R~~l~~~W~~~l 2136 (3245)
T 3vkg_A 2118 GFFDQNFRTDLMRKWMIRL 2136 (3245)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3577777666667777643
No 50
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.56 E-value=59 Score=30.44 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 027350 79 NAWQAEEKRLLQQIDAATE---EMASLRSKIDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~e---Ei~~LR~kl~E~e~~v~~lErEv~eReEm~ 127 (224)
+..+.+|+.+-.+|+.++. ++..|.+++.+++..++++|.+..+-++-+
T Consensus 50 ~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 50 DEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766532 345566666666666777776666544433
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.41 E-value=82 Score=25.91 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
-+..+.+|+..|+-+++-++.+...|++|-
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888887765
No 52
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=52.19 E-value=72 Score=29.79 Aligned_cols=28 Identities=21% Similarity=0.006 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
+-+|-.+-..+..++.+|+++|+.=+|.
T Consensus 39 ~~~ld~~~r~~~~~~~~l~~~rN~~sk~ 66 (484)
T 3lss_A 39 IIEADKKWRRTQFLTEASKKLINICSKA 66 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555543
No 53
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=52.00 E-value=25 Score=22.79 Aligned_cols=29 Identities=7% Similarity=0.383 Sum_probs=23.7
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 100 ASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 100 ~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
..|-.|++++-.+..+||.||.+-++|++
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34677888888888999999999888864
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.56 E-value=45 Score=23.92 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.|+.+.+++..++.+|.++......++.+....+..+.++
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777777777666666666666666666666
No 55
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.97 E-value=26 Score=22.82 Aligned_cols=29 Identities=3% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 100 ASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 100 ~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
..|-.|++++-.+..+||.||.+-.+|++
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 45677888888888899999998888764
No 56
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.28 E-value=97 Score=31.03 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.1
Q ss_pred HHHHHH
Q 027350 91 QIDAAT 96 (224)
Q Consensus 91 qI~al~ 96 (224)
++..+.
T Consensus 928 ~l~ele 933 (1184)
T 1i84_S 928 ILHEME 933 (1184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 57
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.27 E-value=54 Score=24.05 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 105 KIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 105 kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
+|-..+.+++++|.+..++|+.|..|
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455788888888888888777
No 58
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.22 E-value=40 Score=22.75 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 83 AEEKRLLQQIDAA------TEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 83 ~ErKrLr~qI~al------~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|||+.+..+.|. .+.+..|-.++++++..-..|..++..-.+-+.
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777776 355666666666666665666655555444333
No 59
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=49.01 E-value=36 Score=21.88 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 91 QIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
+|.+|..||+.|...++-++-.+.+|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888877777776555444
No 60
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=48.56 E-value=1.3e+02 Score=28.18 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhch------hhHHHHHHHHHHHHHHHHH---------------------------H
Q 027350 52 QLKQMKSRRKEDSKANARVVEIFASHR------NAWQAEEKRLLQQIDAATE---------------------------E 98 (224)
Q Consensus 52 Ei~eLKkrR~EDAKANeKVv~IFAshe------qsW~~ErKrLr~qI~al~e---------------------------E 98 (224)
.|++.-++|..|...=.+|+.+....+ +..+.+|+.+-.+|+.++. +
T Consensus 21 ~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (484)
T 3lss_A 21 IIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQ 100 (484)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhh
Confidence 455555555554322244554444322 3566677777777766543 3
Q ss_pred HHHH----HHh-HHHHHHHHHHhHHHHHHHHHHH
Q 027350 99 MASL----RSK-IDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 99 i~~L----R~k-l~E~e~~v~~lErEv~eReEm~ 127 (224)
+..| .++ ..+++..+.++|.+..+-++-+
T Consensus 101 ~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 101 VEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 555 5556666667766665544433
No 61
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.98 E-value=32 Score=22.32 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=20.9
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 101 SLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 101 ~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|-.|++++-.+..+||.||.+-.+|++
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4667777777777888888888777764
No 62
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.42 E-value=57 Score=24.67 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+.|=..|++.|..|.-||.+|+.+..-++..+.++|.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556677888888888888777777777766554443
No 63
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=46.01 E-value=5.2 Score=25.64 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 92 IDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 92 I~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
|+++..=|..|..++++++.++..+.+++++|
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~l~~~ 37 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKLVGER 37 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44555555566666666666666666666554
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.98 E-value=1e+02 Score=23.92 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027350 39 KEELKARLRAAEEQLKQMKS 58 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKk 58 (224)
.+.|..+...+.-++.++|.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~ 24 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKE 24 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888874
No 65
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=45.75 E-value=84 Score=22.80 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHhHHHHHHHHHHHHHh
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREK----LESDKRVQELEDMIGFM 130 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v----~~lErEv~eReEm~~~l 130 (224)
+.||+||..+..|=+.|-..+.-++..+ ...|.|...|..++.-+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~ 51 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777666555555555555443 34577777777776554
No 66
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=45.64 E-value=18 Score=22.59 Aligned_cols=17 Identities=47% Similarity=0.517 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASL 102 (224)
Q Consensus 86 KrLr~qI~al~eEi~~L 102 (224)
-||.++|.+|+-||+.|
T Consensus 10 arlkqeiaaleyeiaal 26 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 47888898888888765
No 67
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=45.43 E-value=14 Score=27.39 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR 103 (224)
..+|.++|.....++.-|...=.|---+|+ +|-.||..|++||+.|-
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatna------------------rL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNA------------------ILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHH------------------HHHHHHHHHHHHHHHHH
Confidence 677888887776665555544444444444 38899999999987764
No 68
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.76 E-value=1.1e+02 Score=26.01 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
.|=..|.+++.....||..|+.+|+.++...
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555677777777777777777777777654
No 69
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=44.48 E-value=88 Score=22.68 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|=.+|.+++.-|+.=|..+-.|++-.-...+-+|+....|.|.+++|
T Consensus 7 EF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m~kl 53 (64)
T 3hrn_A 7 EFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRL 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44678899999999888999999888888899999999999999999
No 70
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=44.35 E-value=72 Score=24.84 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchhHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEV 139 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~~~ 139 (224)
|..++.....+|..|..++.+++..++.+|+ +||---+|| |.|+.+.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk---ERDFYF~KL--RdIEiLc 55 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEI---EREFYFNKL--RDIEILV 55 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHH
Confidence 4555666667777788888888888888875 689889998 5555555
No 71
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.09 E-value=1e+02 Score=23.34 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+.+|-..+...+.+|..||+.+. ..-.-.+--++..-.+.+.+...|..+..++..+|..++.+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~-------sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKA-------SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888877642 33333445556666677778888888888887777665544
No 72
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.07 E-value=1.8e+02 Score=26.51 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAAT---EEMASLRSKIDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~---eEi~~LR~kl~E~e~~v~~lErEv~eReEm~ 127 (224)
..+.+|+.+-.+|+.++ +++..|.++..+++..++++|.+..+-++-+
T Consensus 49 ~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 49 RLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777776542 2344555666666666666666655544433
No 73
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=44.05 E-value=74 Score=21.71 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.+++..++.+|.++..+-..|-..+.+|..-+.
T Consensus 77 ~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 77 DEEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888887777777766655443
No 74
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.94 E-value=45 Score=21.61 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
+|+.+.+...+|-.|+++-+-++..+..||
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 677888888888888888777777766654
No 75
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.18 E-value=28 Score=22.57 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 101 SLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 101 ~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|-.|++++-.+..+||.||.+-.+|++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4667788888888888888888777653
No 76
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=42.80 E-value=49 Score=24.96 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.|=++|..+|..+.+||+.|+....+++..+.. |+---.||+.|
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~----~q~la~~i~~L 81 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH----VQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 355677888888889998888888777655433 33344566555
No 77
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=42.63 E-value=55 Score=21.31 Aligned_cols=28 Identities=11% Similarity=0.401 Sum_probs=22.7
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 101 SLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 101 ~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|-.|++++-.+..+++.||.+-.+|+|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4667788888888888999988888876
No 78
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=41.32 E-value=81 Score=21.37 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.++...|+.++.++..+-..|-..+.+|...+.
T Consensus 77 ~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le 109 (119)
T 3uun_A 77 EDEETEVQEQMNLLNSRWECLRVASMEKQSNLH 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888777777766666655543
No 79
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.19 E-value=82 Score=21.38 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMI 127 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~ 127 (224)
|.+=...|..|..++..|...-.++...+..|..++..-..++
T Consensus 18 R~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 18 RNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666666666665544443
No 80
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=41.07 E-value=45 Score=29.96 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
+-.|-.+...+..++.+|++.|+.=+|.
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 59 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKE 59 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666667777776665554
No 81
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.41 E-value=63 Score=22.72 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=15.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhch
Q 027350 52 QLKQMKSRRKEDSKANARVVEIFASHR 78 (224)
Q Consensus 52 Ei~eLKkrR~EDAKANeKVv~IFAshe 78 (224)
.+.+||.|-.=.-|.|+|...|.|.-+
T Consensus 4 kvaqlknrvayklkenaklenivarle 30 (56)
T 3he4_A 4 KVAQLKNRVAYKLKENAKLENIVARLE 30 (56)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 456788888888889999988887433
No 82
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.13 E-value=1.2e+02 Score=22.89 Aligned_cols=64 Identities=11% Similarity=0.180 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+.+|-..+...+.+|..||+.+ +..-.-.+--++..-.+.+.+...|..+..++..+|..++.+
T Consensus 38 i~elrr~iq~L~~el~~l~~~~-------~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQC-------ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6677788888888888887764 233333445566666777888888888888888887766544
No 83
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.07 E-value=45 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELER 111 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~ 111 (224)
.|+.+|+.|..|-..||.+++.+|.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 84
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=39.92 E-value=2e+02 Score=25.48 Aligned_cols=83 Identities=12% Similarity=0.250 Sum_probs=53.1
Q ss_pred hCCCCch-----hh-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350 30 SLPKNSS-----QA-KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR 103 (224)
Q Consensus 30 ~lp~~~~-----~S-~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR 103 (224)
.-|.+.+ .+ ...|+.++..+-.+|.+++.- +|.. -+--..+|..+.++|+.|+
T Consensus 58 ~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~------~n~~---------------i~~~V~~iN~l~~qIa~LN 116 (463)
T 2d4y_A 58 SNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQ------VNIA---------------IGSSVAQINNYAKQIANLN 116 (463)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 4677633 33 778888888888888888743 2222 2334567778888888888
Q ss_pred HhHHHHHHH--HHHhHHHHHHHHHHHHHhhhh
Q 027350 104 SKIDELERE--KLESDKRVQELEDMIGFMSRR 133 (224)
Q Consensus 104 ~kl~E~e~~--v~~lErEv~eReEm~~~lsr~ 133 (224)
.++...+.. =..-=.=.-+||.++..||.-
T Consensus 117 ~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 117 DQISRMTGVGAGASPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCCchHhHHHHHHHHHHHHhh
Confidence 888665431 010111234799999999876
No 85
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.88 E-value=8.7 Score=35.96 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027350 42 LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKI 106 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl 106 (224)
|..++..|+.+-..|.+.|.+--.++.+........ ..|+.+|.++|..+..+|..|....
T Consensus 368 l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~----~~e~~~l~~~~~~~~~~~~~~~~~~ 428 (575)
T 2i1j_A 368 LEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNME----AAERQKLEDEIRAKQEEVSRIQQEV 428 (575)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444332222 3445555555555555555544333
No 86
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.81 E-value=50 Score=21.50 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 101 SLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 101 ~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|-.|++++-.+-.+||.||.+-.+|++
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4567778887778888888888888765
No 87
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.51 E-value=1e+02 Score=23.40 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 79 NAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
.+|...--+..++++.|..++..|+.+|++......++
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556678888888888888888877665544
No 88
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=39.06 E-value=47 Score=22.95 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHH
Q 027350 96 TEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
.+|+..|-.-|.|++..+..++.
T Consensus 27 ~DEV~~Le~NLrEL~~ei~~~~~ 49 (51)
T 1yzm_A 27 MDEVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888888888888777666553
No 89
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.02 E-value=1.5e+02 Score=23.37 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 027350 117 DKRVQELEDMIGFM 130 (224)
Q Consensus 117 ErEv~eReEm~~~l 130 (224)
|+-.++-++|..-|
T Consensus 86 Ekl~~eKe~L~~ql 99 (110)
T 2v4h_A 86 EKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 33444445555444
No 90
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.77 E-value=64 Score=21.77 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v 113 (224)
.|+.++|.-..+.|..|..|+.+++..+
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999998653
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.47 E-value=91 Score=20.83 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Q 027350 89 LQQIDAATEEMASLRSKIDELEREKLESDKRVQELED 125 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReE 125 (224)
...|..|..++..|...-.++...|..|..|+..-..
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666554443
No 92
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.92 E-value=19 Score=24.85 Aligned_cols=18 Identities=44% Similarity=0.584 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 027350 91 QIDAATEEMASLRSKIDE 108 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E 108 (224)
-|.-|..||+.||.+++|
T Consensus 32 liaylekeianlrkkiee 49 (49)
T 3he5_A 32 LIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 467789999999999864
No 93
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=35.21 E-value=38 Score=22.03 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=21.8
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 101 SLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 101 ~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|-.|++++-.+..+||.||.+-++|++
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4667788888888888889888877754
No 94
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.94 E-value=99 Score=22.97 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
..|-++|..+|..+.+||+.|+..-..++
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888877644444
No 95
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.93 E-value=72 Score=24.49 Aligned_cols=18 Identities=6% Similarity=-0.219 Sum_probs=9.3
Q ss_pred HHhHHHHHHHHHHHHHhh
Q 027350 114 LESDKRVQELEDMIGFMS 131 (224)
Q Consensus 114 ~~lErEv~eReEm~~~ls 131 (224)
.+|++|...|.+++...+
T Consensus 33 ~~l~eE~~~R~~aE~~~~ 50 (97)
T 2eqb_B 33 EDIAKENELRTKAEEEAD 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 96
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=34.83 E-value=1e+02 Score=23.55 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELE 124 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eRe 124 (224)
+-.++-.++-....-+..+++++..+..|.+|.++||
T Consensus 62 ~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~~~ 98 (98)
T 4fm3_A 62 LDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGETD 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333344444445555667777777777877777765
No 97
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=34.55 E-value=2.7e+02 Score=25.75 Aligned_cols=79 Identities=8% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh---hhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 42 LKARLRAAEEQLKQMKSRRKE---DSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 42 L~~KL~~AE~Ei~eLKkrR~E---DAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
|..+-..|+.=|.-||-.-.. -.+.|.-|+-=+.+ .=+.|..+|...|......|+.|+..++-....+..|+.
T Consensus 50 isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Sk---kml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~ 126 (411)
T 3ghg_C 50 VENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSR---KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKE 126 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556554333 34556666655544 356677778888888888888888887777777777776
Q ss_pred HHHHH
Q 027350 119 RVQEL 123 (224)
Q Consensus 119 Ev~eR 123 (224)
.+..-
T Consensus 127 ~v~~l 131 (411)
T 3ghg_C 127 KVAQL 131 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 98
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.51 E-value=1e+02 Score=21.29 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 83 AEEKRLLQQIDAA------TEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 83 ~ErKrLr~qI~al------~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
.++|+.+..+.|. ..-+..|..++++++..-..|..++
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555 2334444444444444444444433
No 99
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=34.31 E-value=58 Score=24.26 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
|++.|..-|..+.--|+.++-+++.++.++..+|.+++--
T Consensus 2 eErGl~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 2 EESGLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 5566666667776667777777777777776666666543
No 100
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.18 E-value=63 Score=24.56 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
+.|=..|++.|..|.-||.+|+.+..-++..+.++|.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455667777777777777777666666655544443
No 101
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.14 E-value=1.3e+02 Score=26.88 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 80 AWQAEEKRLLQQIDA-ATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 80 sW~~ErKrLr~qI~a-l~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
..+++|+.+-.+|+. ..+++..|.+++.+++..++++|.+..+-++-+..+
T Consensus 46 ~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 46 EVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666652 335677888888888888888888877765554433
No 102
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=34.05 E-value=79 Score=23.45 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=13.1
Q ss_pred HHHHHHHHH---HHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 88 LLQQIDAAT---EEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 88 Lr~qI~al~---eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
|..+|++|. +.++.|..++.+++..+..+....
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555553 345555666666665555554443
No 103
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.91 E-value=40 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.353 Sum_probs=21.7
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 101 SLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 101 ~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|-+|++++-.+-.+|+.||.+-++|++
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 4667888888888888889888887764
No 104
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.24 E-value=2e+02 Score=23.45 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhhh
Q 027350 46 LRAAEEQLKQMKSRRKE 62 (224)
Q Consensus 46 L~~AE~Ei~eLKkrR~E 62 (224)
|.--++|..++++.|.+
T Consensus 66 LnLT~EQq~ql~~I~~e 82 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDD 82 (175)
T ss_dssp --CCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 44446677777777654
No 105
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=32.96 E-value=52 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhH
Q 027350 96 TEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lE 117 (224)
.+|++.|-.-|.|++..+..++
T Consensus 45 ~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 45 MDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777766554
No 106
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.74 E-value=1.4e+02 Score=21.52 Aligned_cols=37 Identities=22% Similarity=0.113 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
.|+.|-.....|..|...|..++.|.+.+..+|....
T Consensus 36 ~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K 72 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKN 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555555555555555555666655554444333
No 107
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=32.01 E-value=61 Score=24.79 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
-||+++++-|.+||..++..|...+..
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999887755
No 108
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.99 E-value=1.1e+02 Score=23.11 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
|++|..+|..-.++|..|-..++..+.++..|+.
T Consensus 46 Kkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 46 KKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444555555555655555555555555555543
No 109
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=31.62 E-value=54 Score=20.25 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~ 109 (224)
.|..+++.|.-|++.|...+.++
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 46667777777777666655554
No 110
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=30.83 E-value=50 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 027350 86 KRLLQQIDAATEEMASLRSKID 107 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~ 107 (224)
-||+++++-|.+||..+...|+
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4788889999999888887765
No 111
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.73 E-value=62 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~ 109 (224)
.|+.++..+.+++..|+.+++.+
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 112
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=30.46 E-value=89 Score=21.34 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=13.5
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 027350 96 TEEMASLRSKIDELEREKL 114 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~ 114 (224)
.+|++.|.+-|.|++..+.
T Consensus 26 fdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 26 MDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6777777777777766554
No 113
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.26 E-value=1.3e+02 Score=22.60 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
.+.+-.+||+.|+.+|+.-++.++.|-.+
T Consensus 48 KLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 48 KLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34445577777777777766666665444
No 114
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=29.89 E-value=86 Score=27.83 Aligned_cols=42 Identities=14% Similarity=0.360 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
.|..+|+.+.++++-+-+++++.-..+..+|+++++-+.||.
T Consensus 220 ~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 220 EMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 688999999999999999999999999999999999877764
No 115
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.67 E-value=1.4e+02 Score=26.76 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAAT---EEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~---eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
..+++|+.+-.+|+.++ +++..|.+++.++...++++|.+..+
T Consensus 48 ~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (425)
T 2dq3_A 48 ALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRK 93 (425)
T ss_dssp HHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665431 12223334444444444444444443
No 116
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.63 E-value=1.7e+02 Score=24.03 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e 110 (224)
+++.|..|..|++.|+.++.+++
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444
No 117
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.58 E-value=1.8e+02 Score=21.90 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027350 82 QAEEKRLLQQIDAATEE 98 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eE 98 (224)
..+=..||++|+.+..|
T Consensus 19 e~~I~~LR~qid~~~~e 35 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTND 35 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334455555544443
No 118
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.33 E-value=1.4e+02 Score=20.41 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
..|..++..|..+-..|+.+++.++..
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 119
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=28.67 E-value=1.6e+02 Score=21.12 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
...+...+..++..+....+.|.+=...|.++. .|+..|..+...+.+-...|-++-.+++..+.+++.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~-----------~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLL-----------EQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777666777776665555543 466777777666666666666666777777777766
Q ss_pred HHHH
Q 027350 119 RVQE 122 (224)
Q Consensus 119 Ev~e 122 (224)
.+.+
T Consensus 85 rl~e 88 (89)
T 3bas_A 85 LVGE 88 (89)
T ss_dssp HHTC
T ss_pred Hhhc
Confidence 5544
No 120
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.15 E-value=1.9e+02 Score=21.70 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLE 115 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~ 115 (224)
+|+|.-|.-++.+-.+.+..+ ..--.+...|..+|..|..|...+...++.++.+.++
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~-------------------~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQK-------------------HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888887776655444221 1122445556666666666666666666666555443
No 121
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.11 E-value=2.1e+02 Score=22.28 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErE 119 (224)
+-..+.-++..+..|+..|++++.+++..+..||.+
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666666555555544
No 122
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=27.80 E-value=1.8e+02 Score=21.17 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh-H-HHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027350 41 ELKARLRAAEEQLKQMKSRRKEDSKANA-R-VVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 41 ~L~~KL~~AE~Ei~eLKkrR~EDAKANe-K-Vv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
.....+..++.+|.+|...|.+=...-. + ..+|-++.=..+..=-..|...|.....++..++.+++.....
T Consensus 30 ~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~ 103 (150)
T 3ajw_A 30 EMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKS 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777788888888887765322111 1 1344455445566666677777777766666666666655543
No 123
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.17 E-value=1.7e+02 Score=21.01 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|.|..-+=+|.+|+.+|+. |.+.+..-+|.|..-|.+++.-+
T Consensus 3 kSLVDtVYalkDev~eLk~---e~k~~k~~le~eqraRk~LE~~v 44 (61)
T 3l4f_A 3 KSLVDTVYALKDEVQELRQ---DNKKMKKSLEEEQRARKDLEKLV 44 (61)
T ss_dssp SHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777776 34444567777777777765544
No 124
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=27.05 E-value=1.5e+02 Score=23.04 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHh
Q 027350 47 RAAEEQLKQMKS 58 (224)
Q Consensus 47 ~~AE~Ei~eLKk 58 (224)
...++||..|+.
T Consensus 12 ~~L~~El~~L~~ 23 (158)
T 1grj_A 12 EKLREELDFLKS 23 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345566666665
No 125
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.49 E-value=2.6e+02 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
-+.|.+++..+..+|..+...+.+++. .+-++...|..+-..|
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNE---ILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334444444444444444444443332 2333444555555554
No 126
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.48 E-value=72 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 027350 86 KRLLQQIDAATEEMASLRSKID 107 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~ 107 (224)
.+|..++..|..+...|+.+|+
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666666666666654
No 127
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.30 E-value=2.5e+02 Score=22.38 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHH----HHHHhHHHHHHHHHHHHHh
Q 027350 99 MASLRSKIDELER----EKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 99 i~~LR~kl~E~e~----~v~~lErEv~eReEm~~~l 130 (224)
...|-..+++.-. -+.+|+.|+..|..++.-|
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L 105 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLAAELEDRRQLARML 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444432 2588999999999999988
No 128
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.24 E-value=1.9e+02 Score=25.70 Aligned_cols=36 Identities=8% Similarity=-0.055 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
-+|...|.....+|..|+.+|+.++.++..|+..+.
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455566666666666655555554443
No 129
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.99 E-value=2e+02 Score=21.24 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIG 128 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~ 128 (224)
....+..++..|...-..++.+|+.|+.|+..-..|+-
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555666666666665555443
No 130
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.95 E-value=1.7e+02 Score=20.95 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
..||..+...|..++.++..+|..++.+
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888899999999988888776554
No 131
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.87 E-value=1.7e+02 Score=20.41 Aligned_cols=38 Identities=5% Similarity=0.139 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
.-...|..++..+..+|..|..++..++.....+....
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777776666665443
No 132
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=25.70 E-value=9.6 Score=29.43 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhHHhhhhhhhhcch
Q 027350 182 SEFLASASKFWTERASSIWQDVQY 205 (224)
Q Consensus 182 ~~f~~sask~W~e~~~~~wQDvqy 205 (224)
.+||-|+..+ .++.+||||-.
T Consensus 55 ~~FyKSMTt~---~dh~~WQDVY~ 75 (101)
T 3hi2_B 55 SDFYKSMTTY---SDHTIWQDVYR 75 (101)
T ss_dssp GGEEEEECCS---TTTTCCEEEEC
T ss_pred HHcccccCcc---CCCCcceeeee
Confidence 4677776665 35589999954
No 133
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.33 E-value=58 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 027350 91 QIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~ 109 (224)
.+..+..|+..|+.+++.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 134
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.30 E-value=2e+02 Score=21.08 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 81 WQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 81 W~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
......+|..++..+...+..|+.++.|.+...+.++
T Consensus 6 l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 6 IVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777776665544433
No 135
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=24.90 E-value=1.4e+02 Score=19.13 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=21.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 96 TEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
.+++..|+.+|+-.-.+|..||++-..-
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~L 32 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKIL 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999998888888888865543
No 136
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.88 E-value=1.6e+02 Score=21.87 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
|-|.-.|.++.-|+..+...|..++..|.+|+.
T Consensus 11 k~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 11 KAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 556778999999999999999999999999885
No 137
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.88 E-value=1.1e+02 Score=21.80 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 027350 89 LQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 89 r~qI~al~eEi~~LR~kl~E~e 110 (224)
..+...+..|+..|+.+...+.
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433333333
No 138
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.72 E-value=1.2e+02 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 027350 91 QIDAATEEMASLRSKIDELEREK 113 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v 113 (224)
+|..|..++..|+.++++++..+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 139
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.50 E-value=1.6e+02 Score=21.74 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhHHHHHHHHHHHHHhh
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELEREK-LESDKRVQELEDMIGFMS 131 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v-~~lErEv~eReEm~~~ls 131 (224)
..++..+.+++.++..+=..|..+|..++.++ ..-.+..+.+.|+-.+|.
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888775 333444555556555553
No 140
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.49 E-value=5e+02 Score=25.34 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHhHH
Q 027350 87 RLLQQIDAATEE-------MASLRSKIDELEREKLESDK 118 (224)
Q Consensus 87 rLr~qI~al~eE-------i~~LR~kl~E~e~~v~~lEr 118 (224)
.|+++|..|.++ |++||..|+++.-.+++||-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555444 33444444444444444443
No 141
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.15 E-value=2.4e+02 Score=21.54 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 027350 46 LRAAEEQLKQMKSRRK 61 (224)
Q Consensus 46 L~~AE~Ei~eLKkrR~ 61 (224)
+..+..+|.+|++...
T Consensus 7 ~e~lre~l~~le~~~~ 22 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELS 22 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555556666654443
No 142
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.08 E-value=2.5e+02 Score=21.69 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhHHHHHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH----------HHHHHHHHHHHh
Q 027350 79 NAWQAEEK--------RLLQQIDAATEEMASLRSKIDELEREKLESDK----------RVQELEDMIGFM 130 (224)
Q Consensus 79 qsW~~ErK--------rLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr----------Ev~eReEm~~~l 130 (224)
++|...+. .+..--..|.+.+..|...|+|++..|.-+|+ |+.+|...+..+
T Consensus 48 ~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~ 117 (130)
T 4dnd_A 48 QRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERM 117 (130)
T ss_dssp HHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHH
No 143
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.77 E-value=3e+02 Score=22.52 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027350 40 EELKARLRAAEEQLKQMKS 58 (224)
Q Consensus 40 r~L~~KL~~AE~Ei~eLKk 58 (224)
..+...|..|+.++.+++.
T Consensus 66 ~~~~~~l~~~~a~l~~~~a 84 (369)
T 4dk0_A 66 TTQINTLNTRKAALASYQA 84 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 144
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.77 E-value=87 Score=23.41 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
+--.-++-|-.+++.|+.|-..|+..++-+.....+++
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445777888888777776666666655554333333
No 145
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=23.77 E-value=1.4e+02 Score=22.85 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 027350 90 QQIDAATEEMASLRSKIDELERE 112 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~ 112 (224)
..+..+.++++.|+.++++++.+
T Consensus 138 ~~~~~l~~~i~~L~~~l~~le~~ 160 (166)
T 3pjs_K 138 AAEEAYTRTTRALHERFDRLERM 160 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666665543
No 146
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=23.73 E-value=1.2e+02 Score=21.56 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHh
Q 027350 96 TEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~v~~l 116 (224)
.+|+..|-.-|.|++..+..+
T Consensus 34 ~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 34 LDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777665444
No 147
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.64 E-value=81 Score=23.51 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhHHHH
Q 027350 94 AATEEMASLRSKIDEL 109 (224)
Q Consensus 94 al~eEi~~LR~kl~E~ 109 (224)
.|.+++..|++++..+
T Consensus 11 ~l~~~~~~l~~~i~~l 26 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHL 26 (109)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 148
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.54 E-value=1e+02 Score=22.85 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
.|-..|+.+|..|..|+..|+.-|-.
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777766544
No 149
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.50 E-value=1.4e+02 Score=22.94 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=12.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 97 EEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 97 eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
+++..||.++++++....+|.++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554443
No 150
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.44 E-value=2.3e+02 Score=22.73 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=5.6
Q ss_pred hHHHHHHHHHH
Q 027350 80 AWQAEEKRLLQ 90 (224)
Q Consensus 80 sW~~ErKrLr~ 90 (224)
.|..|-++|..
T Consensus 43 ~~~~e~~~L~~ 53 (135)
T 2e7s_A 43 DRDDEVKRLRE 53 (135)
T ss_dssp THHHHHHTHHH
T ss_pred hhHHHHHHHHH
Confidence 45555555544
No 151
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=23.15 E-value=3.6e+02 Score=23.67 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHH-------HHHHHhHHHHHHHHHHH
Q 027350 81 WQAEEKRLLQQIDAA-------TEEMASLRSKIDELE-------REKLESDKRVQELEDMI 127 (224)
Q Consensus 81 W~~ErKrLr~qI~al-------~eEi~~LR~kl~E~e-------~~v~~lErEv~eReEm~ 127 (224)
-+.++..+.++++.| ..||+.|-.|++.+. .++..+|++...-+.-+
T Consensus 154 Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 154 LKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345556666666555 788888888888887 33566666665555444
No 152
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.14 E-value=1.5e+02 Score=26.80 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchhHHHHHHHHhhhhhhhhHHHhhhccccc
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESR 164 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~~~~qq~~q~~~~~~e~ee~~~g~c~~r 164 (224)
+...|.+|+..|++++++++..++.+..+..+..+-+-.. +..+.+.+..-++-..-+--+|--|
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~---------~~~rr~l~n~~~~l~gnIrV~vRvR 68 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS---------NMERKELHNTVMDLRDNIRVFCRIR 68 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCCEEEEEEcC
No 153
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.02 E-value=2.5e+02 Score=21.27 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
.-|..++..+.++|..|...++.++..+...+.-...+++-...+
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345666777777777777777777777766666666666655544
No 154
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=22.75 E-value=1.6e+02 Score=28.89 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
.+..|.+||..++..+..||..++.||..
T Consensus 797 d~~~~~~rl~k~~~~~~~~~~~~~~~l~~ 825 (862)
T 1gax_A 797 DVEEWRRRQEKRLKELLALAERSQRKLAS 825 (862)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 48899999999999999999999999876
No 155
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=22.74 E-value=3e+02 Score=22.10 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=24.2
Q ss_pred HHHHHHHHh-hhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHH
Q 027350 50 EEQLKQMKS-RRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDA 94 (224)
Q Consensus 50 E~Ei~eLKk-rR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~a 94 (224)
..||.+|.+ +++| |++|+-+|-+.-++-.-.|..++.++...
T Consensus 14 ~~~i~~m~~fI~qE---A~eKA~EI~~kAeeE~~~ek~~~v~~~~~ 56 (233)
T 4efa_E 14 NDELNKMQAFIRKE---AEEKAKEIQLKADQEYEIEKTNIVRNETN 56 (233)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555543 3333 56677777776666666666666655443
No 156
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.71 E-value=2e+02 Score=21.91 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 027350 86 KRLLQQIDAATEE 98 (224)
Q Consensus 86 KrLr~qI~al~eE 98 (224)
.||+++++...+|
T Consensus 39 arLc~~Vd~t~~e 51 (96)
T 1t3j_A 39 ARLCQQVDMTQKH 51 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677776665433
No 157
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.69 E-value=1.8e+02 Score=21.65 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
|--+..++..|+.+++.-...++.++.++|.|.
T Consensus 42 Lt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 42 LTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555543
No 158
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.28 E-value=2.1e+02 Score=20.25 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
..|++|+..|..|...|..-|++-...-.+||+=+.
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999998888876655567776554
No 159
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.13 E-value=35 Score=28.92 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 84 EEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 84 ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
+...+..+|..+.+|...+.++|+++++.+.+.+-++-.+
T Consensus 149 ~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~ 188 (250)
T 2ve7_C 149 QYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPS 188 (250)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHSCC-------------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3445677777777777777777777776665555444433
No 160
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.03 E-value=4.6e+02 Score=23.97 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ 121 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~ 121 (224)
.+|...|......|..|+.+|..++..+..|...+.
T Consensus 94 ~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 94 IRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444455677777777777666666654443
No 161
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=21.97 E-value=1.9e+02 Score=22.08 Aligned_cols=32 Identities=6% Similarity=0.117 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
..|..++..|.++|..|...++.++..+..++
T Consensus 83 ~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~ 114 (146)
T 3hh0_A 83 RQMHFQREVLLAEQERIAKVLSHMDEMTKKFQ 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666666666666665544443
No 162
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.88 E-value=3.1e+02 Score=21.95 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=39.1
Q ss_pred hhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350 63 DSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120 (224)
Q Consensus 63 DAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv 120 (224)
-+--|--||-.-+|=+ .|...-..+|..|..||..|+.+|.+..+.|++|-++-
T Consensus 48 AaTCNqTV~tL~~SL~----~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 48 AATANHTVMALMASLD----AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556888888877643 22222245689999999999999999998888776553
No 163
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.73 E-value=6.2e+02 Score=29.20 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027350 91 QIDAATEEMASLRSKIDELEREKLESD 117 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~lE 117 (224)
+|..+.+.|+.|.+++++.....++|+
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333333
No 164
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.58 E-value=2e+02 Score=22.67 Aligned_cols=31 Identities=13% Similarity=-0.001 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350 86 KRLLQQIDAATEEMASLRSKIDELEREKLES 116 (224)
Q Consensus 86 KrLr~qI~al~eEi~~LR~kl~E~e~~v~~l 116 (224)
.-|.+++..+.++|..|+..+..++..+..+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKKRM 112 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666554443
No 165
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.48 E-value=2.5e+02 Score=20.65 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=17.8
Q ss_pred hhhHHhhhhhhhhcchhhchhhhhhhhh
Q 027350 190 KFWTERASSIWQDVQYESQYESLESIYH 217 (224)
Q Consensus 190 k~W~e~~~~~wQDvqy~~~~es~es~y~ 217 (224)
+||.+...--||-+.+.....|+++=|.
T Consensus 57 ~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 57 QYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666566666666666666666553
No 166
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.36 E-value=86 Score=21.72 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHhh
Q 027350 37 QAKEELKARLRAA----EEQLKQMKSR 59 (224)
Q Consensus 37 ~S~r~L~~KL~~A----E~Ei~eLKkr 59 (224)
||..+|.+||..+ |.||++|+.|
T Consensus 10 ls~eEL~~rl~~Ld~~Me~Ei~elr~R 36 (51)
T 2jo8_A 10 WTVEDLQKRLLALDPMMEQEIEEIRQK 36 (51)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 5688999998765 6788888876
No 167
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.02 E-value=2.9e+02 Score=21.23 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh-HHHHHHHHHHHHHh
Q 027350 91 QIDAATEEMASLRSKIDELEREKLES-DKRVQELEDMIGFM 130 (224)
Q Consensus 91 qI~al~eEi~~LR~kl~E~e~~v~~l-ErEv~eReEm~~~l 130 (224)
++..|+.....|+.++.+.......+ +.++.+|+.+...|
T Consensus 58 ~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L 98 (155)
T 2oto_A 58 AKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKEL 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455554444333344 66666666665555
No 168
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.80 E-value=2.8e+02 Score=21.01 Aligned_cols=50 Identities=6% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350 69 RVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK 118 (224)
Q Consensus 69 KVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr 118 (224)
.+...+.....+...-..-|..++..+.++|..|...++.++..+..++.
T Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 81 QFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 169
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.77 E-value=1.2e+02 Score=21.79 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350 82 QAEEKRLLQQIDAATEEMASLRSKIDELE 110 (224)
Q Consensus 82 ~~ErKrLr~qI~al~eEi~~LR~kl~E~e 110 (224)
..+..+|..+++.|..+...|+.+|.+++
T Consensus 58 ~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 58 QAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 170
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.72 E-value=4.1e+02 Score=22.94 Aligned_cols=94 Identities=9% Similarity=0.093 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC--ch-hh--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHH
Q 027350 10 KQLQQLLRLYIGMSFSLFLASLPKN--SS-QA--KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAE 84 (224)
Q Consensus 10 ~~~~kla~sYlGlSFalfla~lp~~--~~-~S--~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~E 84 (224)
..+..++.-+...+=+|..|-...+ +. .| +.+|..-+..++.+.. -+-+++|.+=|.+.-.-..=|.=+.-
T Consensus 37 ~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~~a----~~~d~yR~~LK~IR~~E~svqp~R~~ 112 (234)
T 3plt_A 37 RAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFI----DKYDQYRVTLKSIRNIEASVQPSRDR 112 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4567777888889999999977665 22 33 6666666666665553 47788888888888888888888889
Q ss_pred HHHHHHHHHHHHH------HHHHHHHhHH
Q 027350 85 EKRLLQQIDAATE------EMASLRSKID 107 (224)
Q Consensus 85 rKrLr~qI~al~e------Ei~~LR~kl~ 107 (224)
|++|..+|..|.. .|..|+..|.
T Consensus 113 R~~l~~~I~kLk~k~P~s~kl~~LeqELv 141 (234)
T 3plt_A 113 KEKITDEIAHLKYKDPQSTKIPVLEQELV 141 (234)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 9999999988763 3455555443
No 171
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.40 E-value=2.6e+02 Score=20.43 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350 88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM 130 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l 130 (224)
|..-+....+||+..-.++++++.++.+.|.++.+-..-+.++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455566666666666666666666666554444443
No 172
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.29 E-value=2.5e+02 Score=20.28 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 027350 93 DAATEEMASLRSKIDELEREKLESDKRVQELE 124 (224)
Q Consensus 93 ~al~eEi~~LR~kl~E~e~~v~~lErEv~eRe 124 (224)
..+...+..|...-..++.+|..|+.|+..-.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555544433
No 173
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.05 E-value=2.4e+02 Score=22.35 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350 80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123 (224)
Q Consensus 80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR 123 (224)
.=.-|++.|..-+..+.--|+.+.-++.-.+..+..+|.+++--
T Consensus 40 GsTVEERGl~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqal 83 (113)
T 1aa0_A 40 GSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQAL 83 (113)
T ss_dssp CSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeccccchhhhccccchhhhheeecccccchhhhhhhhHHH
Confidence 33468888999999888888888888888888888888777643
No 174
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.05 E-value=3.2e+02 Score=21.44 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHHHHH
Q 027350 96 TEEMASLRSKIDELERE 112 (224)
Q Consensus 96 ~eEi~~LR~kl~E~e~~ 112 (224)
..++..|..||.+++..
T Consensus 81 ~~~Vsalq~KiaeLKrq 97 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQ 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666666654
Done!