Query 027350
Match_columns 224
No_of_seqs 32 out of 34
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 14:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027350.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027350hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 65.1 17 0.0013 24.7 9.8 28 39-66 30-57 (110)
2 d1wu9a1 a.245.1.1 (A:191-249) 61.3 6.1 0.00044 26.3 4.5 38 97-139 1-38 (59)
3 d1seta1 a.2.7.1 (A:1-110) Sery 44.2 34 0.0025 23.1 6.4 13 80-92 46-58 (110)
4 d1j2za_ b.81.1.1 (A:) UDP N-ac 42.6 6.3 0.00046 30.1 2.4 46 90-135 204-254 (259)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 42.5 46 0.0034 22.7 7.6 45 78-122 83-127 (133)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 38.8 41 0.003 21.1 5.8 26 83-108 4-29 (66)
7 d1qvra2 c.37.1.20 (A:149-535) 37.1 1E+02 0.0073 25.3 9.5 70 39-109 255-332 (387)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 34.3 38 0.0028 22.2 5.2 12 47-58 48-59 (88)
9 d1nkpb_ a.38.1.1 (B:) Max prot 27.9 45 0.0033 21.6 4.6 6 29-34 26-31 (83)
10 d1lvfa_ a.47.2.1 (A:) Syntaxin 27.8 85 0.0062 21.3 10.8 46 6-57 12-62 (106)
11 d2jf2a1 b.81.1.1 (A:1-262) UDP 26.7 16 0.0012 28.0 2.4 45 88-132 208-255 (262)
12 d1nkta3 c.37.1.19 (A:-15-225,A 23.7 92 0.0067 25.6 6.8 54 70-123 18-92 (288)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=65.09 E-value=17 Score=24.67 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKEDSKA 66 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA 66 (224)
.-.|-.+...+..++.+|++.|+.=+|.
T Consensus 30 i~~ld~~rr~l~~~~e~l~~~rN~~sk~ 57 (110)
T d1seta1 30 LLALDREVQELKKRLQEVQTERNQVAKR 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888999999999765554
No 2
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.28 E-value=6.1 Score=26.29 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchhHH
Q 027350 97 EEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEV 139 (224)
Q Consensus 97 eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~~~ 139 (224)
+|++.|..++.+++..++.+|+| ||=--+|| |.|++..
T Consensus 1 ee~~~L~~ei~elk~~v~~lEkE---RdFYF~KL--RdIEilc 38 (59)
T d1wu9a1 1 DEAAELMQQVNVLKLTVEDLEKE---RDFYFGKL--RNIELIC 38 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHH
Confidence 47888899999999999999886 88888998 5566555
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=44.18 E-value=34 Score=23.11 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHH
Q 027350 80 AWQAEEKRLLQQI 92 (224)
Q Consensus 80 sW~~ErKrLr~qI 92 (224)
..+.+|+.+-.+|
T Consensus 46 ~l~~~rN~~sk~i 58 (110)
T d1seta1 46 EVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 4
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}
Probab=42.64 E-value=6.3 Score=30.13 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH---HHHHHHHHHh--hhhcc
Q 027350 90 QQIDAATEEMASLRSKIDELEREKLESDKRV---QELEDMIGFM--SRRGC 135 (224)
Q Consensus 90 ~qI~al~eEi~~LR~kl~E~e~~v~~lErEv---~eReEm~~~l--sr~~~ 135 (224)
.+|..+.+....|-+++..++..++.++.+. -+-++|++|| |+||+
T Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~s~rg~ 254 (259)
T d1j2za_ 204 KDIDFIYALYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFILESSRGV 254 (259)
T ss_dssp HHHHHHHHHHHHHTCSSSCHHHHHHHHHHHTSSCHHHHHHHHHHHHCSSCB
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCHHHHHHHHHHHcCCCCC
Confidence 3455555555555444444444443333332 4567888888 44453
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.55 E-value=46 Score=22.69 Aligned_cols=45 Identities=4% Similarity=0.185 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350 78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122 (224)
Q Consensus 78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e 122 (224)
+-++..-.+-|.++|+.+...+..|..++..+++.+..++.+..+
T Consensus 83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~ 127 (133)
T d1fxkc_ 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888899999999999988888888888887777766544
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.83 E-value=41 Score=21.08 Aligned_cols=26 Identities=8% Similarity=0.058 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027350 83 AEEKRLLQQIDAATEEMASLRSKIDE 108 (224)
Q Consensus 83 ~ErKrLr~qI~al~eEi~~LR~kl~E 108 (224)
.|+.||..++..+..+|..+..+|..
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N 29 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLAS 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 58899999999999999999999873
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=37.13 E-value=1e+02 Score=25.26 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh--------hhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350 39 KEELKARLRAAEEQLKQMKSRRKED--------SKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDEL 109 (224)
Q Consensus 39 ~r~L~~KL~~AE~Ei~eLKkrR~ED--------AKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~ 109 (224)
+..|..++...+.|...|++--..| -+.-+..-....+-+..|..++..+ .+|..+..++..+|..++..
T Consensus 255 l~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l-~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 255 IDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREIL-RKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554432222 2222333445556667777766554 44555666666666555443
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.33 E-value=38 Score=22.16 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHh
Q 027350 47 RAAEEQLKQMKS 58 (224)
Q Consensus 47 ~~AE~Ei~eLKk 58 (224)
..|-.-|..|++
T Consensus 48 ~~A~~yI~~L~~ 59 (88)
T d1nkpa_ 48 KKATAYILSVQA 59 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345556666643
No 9
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.85 E-value=45 Score=21.56 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=3.0
Q ss_pred hhCCCC
Q 027350 29 ASLPKN 34 (224)
Q Consensus 29 a~lp~~ 34 (224)
.++|+.
T Consensus 26 ~llP~~ 31 (83)
T d1nkpb_ 26 DSVPSL 31 (83)
T ss_dssp TTSGGG
T ss_pred HHhCCC
Confidence 355643
No 10
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.77 E-value=85 Score=21.34 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--ch---hhHHHHHHHHHHHHHHHHHHH
Q 027350 6 EEEAKQLQQLLRLYIGMSFSLFLASLPKN--SS---QAKEELKARLRAAEEQLKQMK 57 (224)
Q Consensus 6 ~~e~~~~~kla~sYlGlSFalfla~lp~~--~~---~S~r~L~~KL~~AE~Ei~eLK 57 (224)
++-...+..|+..|+.+- ..+++ .+ |..++|..-|..++.+|.+|.
T Consensus 12 q~s~~~~~~l~~~w~~~~------~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe 62 (106)
T d1lvfa_ 12 QKAVNTAQGLFQRWTELL------QGPSAATREEIDWTTNELRNNLRSIEWDLEDLD 62 (106)
T ss_dssp HHHHHHHHHHHHHHHHHT------TCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------ccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444466677777776532 11121 12 559999999999999999994
No 11
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=26.70 E-value=16 Score=28.05 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHH---HhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 027350 88 LLQQIDAATEEMASLR---SKIDELEREKLESDKRVQELEDMIGFMSR 132 (224)
Q Consensus 88 Lr~qI~al~eEi~~LR---~kl~E~e~~v~~lErEv~eReEm~~~lsr 132 (224)
+...|..+.+..+.|. ..|+++.+++++++..-.+.+++++|++.
T Consensus 208 ~~e~i~~lk~~~k~L~~~~~~l~~~~~~l~~~~~~~~~v~~~i~Fi~~ 255 (262)
T d2jf2a1 208 SREAITAIRNAYKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFAR 255 (262)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCHHHHHHHHHHHh
Confidence 4444555544444443 45666666677777777789999999843
No 12
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.71 E-value=92 Score=25.60 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHH----------------HHhHHHHHHH
Q 027350 70 VVEIFASHRNAWQAEEKRLLQQIDAATEEMA-----SLRSKIDELEREK----------------LESDKRVQEL 123 (224)
Q Consensus 70 Vv~IFAsheqsW~~ErKrLr~qI~al~eEi~-----~LR~kl~E~e~~v----------------~~lErEv~eR 123 (224)
.-.||.+..+.-...=+++..+|.++++++. .|+.|..+++.++ =++=||+.+|
T Consensus 18 lkKIFGs~n~R~LKr~~~iV~kIN~LE~el~~LSDeEL~~kT~eLK~rla~~k~gesLDdiLpEAFAlVREAakR 92 (288)
T d1nkta3 18 LSKLLRLGEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETLDDLLPEAFAVAREAAWR 92 (288)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHh
Confidence 3468888888888888999999999988865 3666666666443 3455777776
Done!