BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027351
         (224 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
 pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
 pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
 pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
 pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
 pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
 pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
 pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
          Jannaschii
          Length = 349

 Score = 32.0 bits (71), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 66 GDKSVYVDPDPGHSIQAIFEQVFG 89
          G K V V  DP HS++ IFEQ FG
Sbjct: 54 GLKVVIVSTDPAHSLRDIFEQEFG 77


>pdb|2D1G|A Chain A, Structure Of Francisella Tularensis Acid Phosphatase A
          (Acpa) Bound To Orthovanadate
 pdb|2D1G|B Chain B, Structure Of Francisella Tularensis Acid Phosphatase A
          (Acpa) Bound To Orthovanadate
          Length = 498

 Score = 30.4 bits (67), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 14 PIKTIVVLVQENRSFDHMIG-WMKSLNPE 41
          PIK +V++ QEN SFD   G +  + NPE
Sbjct: 33 PIKHVVIIFQENNSFDRYFGMYPNAKNPE 61


>pdb|4F91|B Chain B, Brr2 Helicase Region
          Length = 1724

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 70  VYVDPDPGHSIQAIFEQVFGLTWAQYT 96
           VYV    G  ++AIFE V    WAQ T
Sbjct: 681 VYVTQSAGRLMRAIFEIVLNRGWAQLT 707


>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
           Rhodobacter Sphaeroides Kd131
 pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
           Rhodobacter Sphaeroides Kd131
          Length = 476

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 139 KPDMVPVYKELVAEFGVCDRWFAS 162
           K D++ +  E+V  FG C  WFAS
Sbjct: 253 KHDILYISDEVVTGFGRCGEWFAS 276


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,678,332
Number of Sequences: 62578
Number of extensions: 255362
Number of successful extensions: 500
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 5
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)