Query 027352
Match_columns 224
No_of_seqs 125 out of 329
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0027 Calmodulin and related 99.9 5.5E-26 1.2E-30 184.7 10.6 137 2-186 11-149 (151)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 2.8E-24 6.1E-29 177.7 10.0 131 2-185 23-155 (160)
3 KOG0028 Ca2+-binding protein ( 99.9 4.3E-21 9.2E-26 157.7 11.0 132 3-186 37-170 (172)
4 PTZ00184 calmodulin; Provision 99.8 6.5E-19 1.4E-23 138.8 11.3 131 3-185 15-147 (149)
5 PTZ00183 centrin; Provisional 99.8 5.1E-19 1.1E-23 141.5 10.6 132 3-186 21-154 (158)
6 KOG0031 Myosin regulatory ligh 99.7 2.1E-16 4.5E-21 129.4 11.2 128 2-185 35-164 (171)
7 KOG0030 Myosin essential light 99.7 2.2E-16 4.8E-21 127.3 9.9 133 2-185 14-150 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.6 3.7E-15 8.1E-20 126.4 10.7 135 3-186 37-175 (187)
9 KOG0037 Ca2+-binding protein, 99.6 3.7E-14 8E-19 121.9 11.4 127 2-186 60-188 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.5 2E-13 4.4E-18 116.3 12.7 132 12-185 41-174 (193)
11 cd05022 S-100A13 S-100A13: S-1 99.5 1E-13 2.2E-18 104.6 8.4 73 112-194 8-83 (89)
12 PF13499 EF-hand_7: EF-hand do 99.5 7.6E-14 1.6E-18 97.6 6.5 66 113-184 1-66 (66)
13 KOG0036 Predicted mitochondria 99.4 9E-13 2E-17 122.2 11.0 126 3-185 18-145 (463)
14 cd05026 S-100Z S-100Z: S-100Z 99.4 2.3E-12 5E-17 97.4 9.2 72 112-189 10-84 (93)
15 cd05027 S-100B S-100B: S-100B 99.4 2E-12 4.4E-17 97.0 8.6 67 113-189 9-82 (88)
16 cd05025 S-100A1 S-100A1: S-100 99.4 4.9E-12 1.1E-16 94.8 9.4 72 112-189 9-83 (92)
17 cd05031 S-100A10_like S-100A10 99.3 9.2E-12 2E-16 93.8 8.4 70 112-187 8-80 (94)
18 cd00052 EH Eps15 homology doma 99.2 2.5E-11 5.3E-16 84.2 7.2 64 115-190 2-65 (67)
19 KOG0027 Calmodulin and related 99.2 3.4E-11 7.5E-16 97.7 7.3 68 112-189 8-75 (151)
20 cd05029 S-100A6 S-100A6: S-100 99.2 6E-11 1.3E-15 89.0 7.5 68 113-190 11-83 (88)
21 cd00213 S-100 S-100: S-100 dom 99.2 1.9E-10 4.2E-15 85.1 9.0 72 112-189 8-82 (88)
22 KOG4223 Reticulocalbin, calume 99.2 2E-11 4.3E-16 110.3 4.2 145 3-195 167-314 (325)
23 smart00027 EH Eps15 homology d 99.2 1.6E-10 3.4E-15 87.2 8.4 74 112-201 10-83 (96)
24 cd05023 S-100A11 S-100A11: S-1 99.1 1.5E-10 3.3E-15 87.1 7.5 72 112-188 9-82 (89)
25 PLN02964 phosphatidylserine de 99.1 1.2E-10 2.6E-15 114.5 8.8 95 2-140 146-243 (644)
26 cd00252 SPARC_EC SPARC_EC; ext 99.0 2E-09 4.4E-14 84.9 10.4 98 63-184 7-106 (116)
27 KOG0038 Ca2+-binding kinase in 99.0 1.4E-09 3.1E-14 89.1 9.6 100 51-186 78-177 (189)
28 KOG0377 Protein serine/threoni 99.0 1.1E-09 2.4E-14 102.7 10.1 147 3-187 468-616 (631)
29 PTZ00183 centrin; Provisional 99.0 3.3E-09 7.2E-14 84.5 11.0 97 48-186 22-118 (158)
30 PF13833 EF-hand_8: EF-hand do 99.0 4.6E-10 1E-14 75.7 5.0 52 125-186 1-53 (54)
31 cd00051 EFh EF-hand, calcium b 99.0 1.3E-09 2.8E-14 72.1 6.3 61 114-184 2-62 (63)
32 PTZ00184 calmodulin; Provision 99.0 7.6E-09 1.7E-13 81.2 11.4 97 48-186 16-112 (149)
33 cd05030 calgranulins Calgranul 98.9 6.3E-09 1.4E-13 77.8 8.6 71 113-189 9-82 (88)
34 PF13499 EF-hand_7: EF-hand do 98.9 9E-10 2E-14 76.8 3.5 62 2-70 3-66 (66)
35 KOG0044 Ca2+ sensor (EF-Hand s 98.9 3E-09 6.6E-14 90.8 6.7 107 2-140 67-175 (193)
36 KOG4223 Reticulocalbin, calume 98.9 1E-08 2.3E-13 92.8 9.5 145 3-186 81-228 (325)
37 cd05022 S-100A13 S-100A13: S-1 98.9 4.3E-09 9.2E-14 79.4 5.9 61 2-73 11-76 (89)
38 COG5126 FRQ1 Ca2+-binding prot 98.8 1.5E-08 3.3E-13 84.1 7.4 66 112-188 20-85 (160)
39 cd05026 S-100Z S-100Z: S-100Z 98.8 7.7E-09 1.7E-13 78.1 4.3 64 2-72 13-81 (93)
40 cd05025 S-100A1 S-100A1: S-100 98.7 1.6E-08 3.4E-13 75.7 5.3 64 2-72 12-80 (92)
41 cd05027 S-100B S-100B: S-100B 98.7 1.7E-08 3.6E-13 75.8 4.8 60 2-72 11-79 (88)
42 KOG0028 Ca2+-binding protein ( 98.7 1E-07 2.2E-12 79.0 9.0 101 47-190 37-138 (172)
43 PF14658 EF-hand_9: EF-hand do 98.7 2.8E-08 6.1E-13 71.1 4.6 60 3-73 2-65 (66)
44 PLN02964 phosphatidylserine de 98.6 2.7E-07 5.9E-12 91.1 10.9 64 113-186 180-243 (644)
45 cd05031 S-100A10_like S-100A10 98.6 6.2E-08 1.3E-12 72.8 4.4 64 2-72 11-79 (94)
46 cd05029 S-100A6 S-100A6: S-100 98.5 8.3E-08 1.8E-12 72.0 4.4 60 2-72 13-79 (88)
47 PF00036 EF-hand_1: EF hand; 98.5 7.4E-08 1.6E-12 58.1 3.0 28 159-186 1-28 (29)
48 PF14658 EF-hand_9: EF-hand do 98.5 3E-07 6.5E-12 65.8 5.9 62 116-186 2-64 (66)
49 cd00213 S-100 S-100: S-100 dom 98.5 1.6E-07 3.5E-12 69.3 4.8 64 2-72 11-79 (88)
50 cd00052 EH Eps15 homology doma 98.5 1.9E-07 4.2E-12 64.4 4.7 58 2-72 2-61 (67)
51 PRK12309 transaldolase/EF-hand 98.5 6.4E-07 1.4E-11 84.0 9.5 59 108-189 330-388 (391)
52 KOG0041 Predicted Ca2+-binding 98.5 4.1E-07 8.8E-12 78.1 7.0 66 112-187 99-164 (244)
53 smart00027 EH Eps15 homology d 98.4 3.8E-07 8.3E-12 68.7 5.0 58 2-72 13-72 (96)
54 PF00036 EF-hand_1: EF hand; 98.4 2.2E-07 4.7E-12 56.0 2.5 29 113-141 1-29 (29)
55 KOG0031 Myosin regulatory ligh 98.4 1.3E-06 2.9E-11 72.1 7.6 69 112-186 32-129 (171)
56 KOG0034 Ca2+/calmodulin-depend 98.3 5.2E-07 1.1E-11 76.7 4.9 65 4-72 109-175 (187)
57 cd05024 S-100A10 S-100A10: A s 98.3 4E-06 8.7E-11 63.6 8.7 69 113-188 9-78 (91)
58 PF13833 EF-hand_8: EF-hand do 98.3 8.9E-07 1.9E-11 59.5 4.1 50 12-71 2-52 (54)
59 PF13405 EF-hand_6: EF-hand do 98.3 5.8E-07 1.3E-11 54.4 2.4 29 114-142 2-31 (31)
60 KOG2643 Ca2+ binding protein, 98.3 9.5E-06 2.1E-10 76.4 11.5 139 4-190 238-387 (489)
61 KOG0037 Ca2+-binding protein, 98.2 6.9E-06 1.5E-10 71.1 9.3 94 40-185 58-151 (221)
62 cd00051 EFh EF-hand, calcium b 98.2 1.9E-06 4E-11 56.7 3.6 58 2-70 3-62 (63)
63 cd05023 S-100A11 S-100A11: S-1 98.1 5.2E-06 1.1E-10 62.4 4.9 65 2-72 12-80 (89)
64 cd05030 calgranulins Calgranul 98.1 4.1E-06 9E-11 62.5 4.3 62 2-72 11-79 (88)
65 KOG0036 Predicted mitochondria 98.0 3.6E-05 7.9E-10 72.2 10.6 94 47-187 18-111 (463)
66 KOG0040 Ca2+-binding actin-bun 98.0 3.5E-05 7.6E-10 81.0 10.2 132 4-184 2258-2396(2399)
67 PF13202 EF-hand_5: EF hand; P 98.0 4.2E-06 9.1E-11 48.7 2.0 25 114-138 1-25 (25)
68 KOG4065 Uncharacterized conser 98.0 2E-05 4.3E-10 62.5 6.1 68 116-183 71-142 (144)
69 KOG2643 Ca2+ binding protein, 97.9 1.6E-05 3.4E-10 75.0 6.2 53 125-187 401-454 (489)
70 PF13202 EF-hand_5: EF hand; P 97.9 8.4E-06 1.8E-10 47.4 2.8 25 160-184 1-25 (25)
71 PF10591 SPARC_Ca_bdg: Secrete 97.9 4.3E-06 9.3E-11 65.6 0.9 60 111-182 53-112 (113)
72 KOG0751 Mitochondrial aspartat 97.9 0.00014 3.1E-09 69.7 11.2 134 9-193 46-182 (694)
73 KOG0046 Ca2+-binding actin-bun 97.8 6.4E-05 1.4E-09 72.3 8.3 77 112-196 19-95 (627)
74 PRK12309 transaldolase/EF-hand 97.8 5.7E-05 1.2E-09 71.0 7.3 70 19-140 315-385 (391)
75 cd00252 SPARC_EC SPARC_EC; ext 97.8 2.3E-05 4.9E-10 61.9 3.9 53 3-70 52-106 (116)
76 PF12763 EF-hand_4: Cytoskelet 97.8 0.00012 2.7E-09 56.7 7.9 69 112-193 10-78 (104)
77 KOG4251 Calcium binding protei 97.7 4.7E-05 1E-09 67.6 5.2 69 109-185 98-167 (362)
78 KOG2562 Protein phosphatase 2 97.7 0.00014 3E-09 69.1 8.6 132 5-182 284-420 (493)
79 KOG0030 Myosin essential light 97.7 7.2E-05 1.6E-09 61.0 5.4 67 112-188 11-79 (152)
80 PF14788 EF-hand_10: EF hand; 97.6 0.00013 2.8E-09 49.6 5.3 49 128-186 1-49 (51)
81 KOG4251 Calcium binding protei 97.6 0.00026 5.7E-09 62.9 8.3 139 3-184 105-262 (362)
82 PF13405 EF-hand_6: EF-hand do 97.6 8.3E-05 1.8E-09 44.8 3.1 27 160-186 2-28 (31)
83 KOG4666 Predicted phosphate ac 97.5 0.00026 5.5E-09 65.0 6.9 104 40-192 260-364 (412)
84 cd05024 S-100A10 S-100A10: A s 97.5 0.0002 4.3E-09 54.4 4.9 64 2-72 11-76 (91)
85 KOG0041 Predicted Ca2+-binding 97.4 0.00013 2.9E-09 62.8 3.3 60 2-72 102-163 (244)
86 KOG0038 Ca2+-binding kinase in 97.3 0.00037 8E-09 57.5 5.0 64 2-71 111-176 (189)
87 KOG0377 Protein serine/threoni 97.2 0.00044 9.5E-09 65.7 4.8 62 3-71 551-614 (631)
88 KOG4065 Uncharacterized conser 97.2 0.00088 1.9E-08 53.3 5.8 65 4-69 72-142 (144)
89 PF12763 EF-hand_4: Cytoskelet 97.1 0.00072 1.6E-08 52.4 4.2 64 3-79 14-78 (104)
90 KOG0040 Ca2+-binding actin-bun 97.0 0.004 8.6E-08 66.3 10.3 71 112-185 2253-2323(2399)
91 smart00054 EFh EF-hand, calciu 97.0 0.00062 1.3E-08 37.7 2.6 27 160-186 2-28 (29)
92 smart00054 EFh EF-hand, calciu 96.8 0.001 2.2E-08 36.8 2.4 27 114-140 2-28 (29)
93 KOG0751 Mitochondrial aspartat 96.7 0.008 1.7E-07 58.0 8.4 137 3-193 112-260 (694)
94 KOG2562 Protein phosphatase 2 95.8 0.067 1.4E-06 51.3 9.5 137 3-191 229-384 (493)
95 PF10591 SPARC_Ca_bdg: Secrete 95.1 0.0037 7.9E-08 49.0 -1.1 52 4-68 59-112 (113)
96 PF09279 EF-hand_like: Phospho 94.4 0.052 1.1E-06 39.4 3.7 63 114-185 2-68 (83)
97 KOG0046 Ca2+-binding actin-bun 94.0 0.049 1.1E-06 53.0 3.4 64 3-74 23-87 (627)
98 KOG3866 DNA-binding protein of 93.4 0.16 3.4E-06 46.9 5.5 66 116-183 248-321 (442)
99 KOG3555 Ca2+-binding proteogly 93.4 0.062 1.3E-06 50.0 2.9 60 112-185 250-309 (434)
100 PF14788 EF-hand_10: EF hand; 92.7 0.24 5.1E-06 33.8 4.2 30 112-141 21-50 (51)
101 PF05042 Caleosin: Caleosin re 92.6 0.49 1.1E-05 40.0 6.9 74 113-186 8-124 (174)
102 KOG1029 Endocytic adaptor prot 92.6 0.2 4.2E-06 51.0 5.2 62 112-185 195-256 (1118)
103 KOG0169 Phosphoinositide-speci 92.2 0.77 1.7E-05 46.5 8.8 128 3-185 140-273 (746)
104 KOG4578 Uncharacterized conser 91.8 0.17 3.8E-06 46.8 3.6 64 113-185 334-397 (421)
105 KOG0042 Glycerol-3-phosphate d 91.7 0.22 4.8E-06 49.1 4.3 66 113-188 594-659 (680)
106 KOG0035 Ca2+-binding actin-bun 90.5 0.62 1.3E-05 48.1 6.3 73 109-186 744-816 (890)
107 KOG0998 Synaptic vesicle prote 89.7 0.29 6.3E-06 50.5 3.3 71 112-194 283-353 (847)
108 KOG0169 Phosphoinositide-speci 88.2 1.1 2.4E-05 45.4 6.1 65 112-186 136-200 (746)
109 PLN02952 phosphoinositide phos 87.9 2.6 5.6E-05 42.1 8.5 65 112-185 38-109 (599)
110 PF09069 EF-hand_3: EF-hand; 87.8 4.4 9.5E-05 30.7 7.8 64 112-186 3-75 (90)
111 KOG0035 Ca2+-binding actin-bun 87.6 0.83 1.8E-05 47.2 4.9 96 3-136 751-848 (890)
112 KOG4578 Uncharacterized conser 86.8 0.48 1E-05 44.0 2.5 60 49-140 339-398 (421)
113 KOG1707 Predicted Ras related/ 86.7 2.2 4.8E-05 42.4 7.1 30 158-187 315-344 (625)
114 KOG1707 Predicted Ras related/ 85.7 4.4 9.5E-05 40.3 8.6 61 112-185 315-376 (625)
115 KOG2243 Ca2+ release channel ( 84.3 1.6 3.4E-05 47.5 5.0 82 116-212 4061-4142(5019)
116 cd07313 terB_like_2 tellurium 83.0 2.6 5.7E-05 31.4 4.7 54 126-187 13-66 (104)
117 KOG4004 Matricellular protein 81.9 2.1 4.4E-05 37.4 4.1 93 62-184 140-248 (259)
118 KOG4347 GTPase-activating prot 81.6 3.6 7.9E-05 41.2 6.2 58 112-180 555-612 (671)
119 KOG2243 Ca2+ release channel ( 81.3 1.7 3.7E-05 47.3 3.9 57 3-71 4061-4119(5019)
120 KOG4666 Predicted phosphate ac 80.4 2.8 6E-05 39.1 4.6 65 112-185 259-323 (412)
121 PF05042 Caleosin: Caleosin re 80.0 10 0.00022 32.2 7.5 145 7-185 15-165 (174)
122 PF05517 p25-alpha: p25-alpha 78.8 12 0.00025 30.7 7.5 66 114-187 4-70 (154)
123 KOG1029 Endocytic adaptor prot 78.6 6.1 0.00013 40.7 6.7 75 114-204 15-91 (1118)
124 KOG3555 Ca2+-binding proteogly 77.7 1.9 4E-05 40.4 2.6 60 40-140 251-310 (434)
125 KOG2419 Phosphatidylserine dec 76.1 2.1 4.5E-05 43.1 2.7 96 114-210 439-557 (975)
126 PF08726 EFhand_Ca_insen: Ca2+ 76.0 1.9 4.1E-05 31.0 1.8 27 112-139 6-32 (69)
127 KOG1955 Ral-GTPase effector RA 75.7 5.8 0.00012 39.0 5.4 62 112-185 231-292 (737)
128 KOG0039 Ferric reductase, NADH 73.3 5.4 0.00012 40.0 4.9 83 111-196 17-100 (646)
129 KOG1955 Ral-GTPase effector RA 71.8 3.1 6.6E-05 40.8 2.6 48 94-141 247-294 (737)
130 PF14513 DAG_kinase_N: Diacylg 66.6 8.8 0.00019 31.3 3.9 52 126-189 5-63 (138)
131 KOG0042 Glycerol-3-phosphate d 65.4 4.5 9.7E-05 40.3 2.3 59 3-72 597-657 (680)
132 KOG3866 DNA-binding protein of 63.8 12 0.00026 34.8 4.6 65 2-69 247-321 (442)
133 PF06892 Phage_CP76: Phage reg 62.4 28 0.0006 28.9 6.2 42 161-202 35-81 (162)
134 COG4103 Uncharacterized protei 58.2 33 0.00071 28.3 5.8 60 116-185 34-93 (148)
135 PF08414 NADPH_Ox: Respiratory 56.7 33 0.00072 26.5 5.3 64 112-187 30-93 (100)
136 PF00404 Dockerin_1: Dockerin 55.3 13 0.00029 20.6 2.2 18 168-185 1-18 (21)
137 KOG0998 Synaptic vesicle prote 54.0 14 0.00031 38.4 3.7 160 3-191 15-195 (847)
138 PF09279 EF-hand_like: Phospho 53.9 20 0.00044 25.5 3.6 64 3-71 4-68 (83)
139 TIGR00344 alaS alanine--tRNA l 52.6 83 0.0018 32.9 9.0 49 126-190 380-428 (851)
140 PF05517 p25-alpha: p25-alpha 52.4 21 0.00045 29.2 3.9 53 12-72 16-69 (154)
141 PF09068 EF-hand_2: EF hand; 52.1 80 0.0017 25.1 7.1 68 58-141 57-126 (127)
142 PRK03968 DNA primase large sub 43.7 24 0.00051 33.5 3.2 95 109-215 182-283 (399)
143 TIGR03683 A-tRNA_syn_arch alan 42.5 92 0.002 32.8 7.6 48 127-190 432-480 (902)
144 PF12631 GTPase_Cys_C: Catalyt 42.5 30 0.00066 24.5 3.0 50 112-167 23-72 (73)
145 PLN02222 phosphoinositide phos 41.4 77 0.0017 31.7 6.5 65 112-186 25-90 (581)
146 KOG2871 Uncharacterized conser 41.2 12 0.00026 35.5 0.9 113 55-183 251-371 (449)
147 KOG1954 Endocytosis/signaling 40.3 37 0.0008 32.7 3.9 57 112-181 444-500 (532)
148 PRK00252 alaS alanyl-tRNA synt 40.1 1.7E+02 0.0037 30.7 9.1 47 127-189 375-421 (865)
149 PF05099 TerB: Tellurite resis 40.0 12 0.00027 29.0 0.6 22 126-147 37-58 (140)
150 PLN02900 alanyl-tRNA synthetas 38.8 2.5E+02 0.0053 29.9 10.0 50 124-189 406-455 (936)
151 PRK09430 djlA Dna-J like membr 38.5 98 0.0021 27.6 6.2 52 126-186 69-120 (267)
152 PF08671 SinI: Anti-repressor 37.9 43 0.00093 20.3 2.6 26 157-185 2-27 (30)
153 PF06226 DUF1007: Protein of u 37.9 38 0.00083 29.0 3.4 32 163-194 55-86 (212)
154 PLN02228 Phosphoinositide phos 35.9 1.2E+02 0.0027 30.2 6.9 65 112-186 24-92 (567)
155 TIGR03573 WbuX N-acetyl sugar 35.7 77 0.0017 29.1 5.3 43 126-184 300-342 (343)
156 PF02037 SAP: SAP domain; Int 34.5 91 0.002 19.0 3.9 24 128-155 3-26 (35)
157 PRK13902 alaS alanyl-tRNA synt 34.3 3.1E+02 0.0068 28.9 9.9 48 127-190 428-476 (900)
158 PF09373 PMBR: Pseudomurein-bi 33.3 52 0.0011 19.9 2.5 18 57-74 1-18 (33)
159 PF01411 tRNA-synt_2c: tRNA sy 33.0 72 0.0016 31.5 4.9 46 126-187 379-424 (552)
160 KOG3449 60S acidic ribosomal p 33.0 1.6E+02 0.0035 23.2 5.8 63 114-191 3-65 (112)
161 PF09069 EF-hand_3: EF-hand; 31.9 1.1E+02 0.0025 23.0 4.7 40 158-199 3-42 (90)
162 cd07177 terB_like tellurium re 31.6 1.6E+02 0.0034 20.9 5.4 18 126-143 13-30 (104)
163 PF13623 SurA_N_2: SurA N-term 31.6 2.7E+02 0.0059 22.5 7.3 15 169-183 130-144 (145)
164 PF01397 Terpene_synth: Terpen 31.0 2E+02 0.0042 24.3 6.6 28 19-51 52-79 (183)
165 cd03211 GST_C_Metaxin2 GST_C f 29.7 1.2E+02 0.0027 23.4 4.9 42 160-201 38-79 (126)
166 PF06226 DUF1007: Protein of u 29.6 47 0.001 28.5 2.6 25 117-141 55-79 (212)
167 PF09862 DUF2089: Protein of u 29.5 1.4E+02 0.0029 23.6 4.9 53 129-185 61-113 (113)
168 PRK01584 alanyl-tRNA synthetas 29.3 3.1E+02 0.0067 27.6 8.5 44 126-185 385-428 (594)
169 PF09851 SHOCT: Short C-termin 29.1 64 0.0014 19.2 2.4 17 172-188 14-30 (31)
170 PF11116 DUF2624: Protein of u 29.0 2.5E+02 0.0054 21.0 6.1 50 128-187 14-63 (85)
171 PF12949 HeH: HeH/LEM domain; 28.6 65 0.0014 20.1 2.4 18 128-145 3-20 (35)
172 cd07316 terB_like_DjlA N-termi 28.3 2.3E+02 0.0051 20.5 6.4 53 126-187 13-65 (106)
173 smart00540 LEM in nuclear memb 28.0 1.3E+02 0.0027 19.8 3.8 22 128-150 5-26 (44)
174 cd03035 ArsC_Yffb Arsenate Red 27.4 89 0.0019 23.7 3.6 59 117-186 25-83 (105)
175 cd07176 terB tellurite resista 27.3 36 0.00078 25.0 1.3 16 126-141 16-31 (111)
176 PLN02952 phosphoinositide phos 27.0 1.7E+02 0.0038 29.4 6.4 53 125-186 13-65 (599)
177 PLN02230 phosphoinositide phos 26.5 2.2E+02 0.0047 28.8 6.9 67 112-186 29-102 (598)
178 PF03500 Cellsynth_D: Cellulos 26.3 97 0.0021 25.5 3.8 40 129-168 16-59 (144)
179 TIGR02613 mob_myst_B mobile my 25.7 1.5E+02 0.0033 24.8 5.0 54 123-185 126-186 (186)
180 PF12486 DUF3702: ImpA domain 25.7 2.6E+02 0.0056 23.0 6.2 33 113-145 70-102 (148)
181 cd02977 ArsC_family Arsenate R 24.8 1.6E+02 0.0035 21.7 4.6 71 118-205 26-99 (105)
182 PF12174 RST: RCD1-SRO-TAF4 (R 24.6 1.6E+02 0.0035 21.1 4.2 30 158-190 28-57 (70)
183 PF08976 DUF1880: Domain of un 24.5 51 0.0011 26.3 1.7 30 156-185 5-34 (118)
184 PF12767 SAGA-Tad1: Transcript 24.5 1E+02 0.0022 27.0 3.9 49 126-188 6-55 (252)
185 PF07499 RuvA_C: RuvA, C-termi 24.5 2E+02 0.0043 18.5 4.4 38 131-182 3-40 (47)
186 TIGR01209 RNA ligase, Pab1020 24.4 87 0.0019 29.7 3.6 54 117-171 162-217 (374)
187 PRK10788 periplasmic folding c 24.2 4.3E+02 0.0094 26.1 8.6 24 57-80 46-69 (623)
188 KOG2116 Protein involved in pl 23.8 1.3E+02 0.0029 30.7 4.8 101 12-126 538-650 (738)
189 PF12588 PSDC: Phophatidylseri 23.8 2.2E+02 0.0047 23.3 5.3 35 156-190 18-58 (141)
190 PF00226 DnaJ: DnaJ domain; I 23.5 2.3E+02 0.0049 18.7 5.4 45 145-189 6-52 (64)
191 PHA02692 hypothetical protein; 23.3 1.1E+02 0.0023 22.2 3.0 31 157-189 2-32 (70)
192 KOG4347 GTPase-activating prot 23.2 1.3E+02 0.0028 30.6 4.6 54 47-134 559-612 (671)
193 smart00513 SAP Putative DNA-bi 22.7 1.8E+02 0.004 17.4 3.8 23 128-154 3-25 (35)
194 PLN02223 phosphoinositide phos 22.3 2.7E+02 0.0058 27.7 6.6 73 112-186 16-92 (537)
195 TIGR02787 codY_Gpos GTP-sensin 22.0 1.4E+02 0.0031 26.7 4.2 43 112-170 183-225 (251)
196 PF03672 UPF0154: Uncharacteri 21.3 71 0.0015 22.7 1.8 29 12-46 29-58 (64)
197 KOG0506 Glutaminase (contains 20.5 2.3E+02 0.0049 28.2 5.5 101 4-129 91-198 (622)
198 TIGR02553 SipD_IpaD_SspD type 20.4 6.9E+02 0.015 23.1 11.0 55 130-184 196-256 (308)
No 1
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.93 E-value=5.5e-26 Score=184.71 Aligned_cols=137 Identities=17% Similarity=0.265 Sum_probs=116.7
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQ 79 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~ 79 (224)
.++|..||+|+ |+|+.. |+.+|+.||.. |+.. ++..++ .++ |.||+|.|+|+||+.+|.+.....
T Consensus 11 ~~~F~~fD~d~~G~i~~~el~~~lr~lg~~----~t~~--el~~~~----~~~-D~dg~g~I~~~eF~~l~~~~~~~~-- 77 (151)
T KOG0027|consen 11 KEAFQLFDKDGDGKISVEELGAVLRSLGQN----PTEE--ELRDLI----KEI-DLDGDGTIDFEEFLDLMEKLGEEK-- 77 (151)
T ss_pred HHHHHHHCCCCCCcccHHHHHHHHHHcCCC----CCHH--HHHHHH----HHh-CCCCCCeEcHHHHHHHHHhhhccc--
Confidence 46899999996 999999 99999999988 8888 999999 585 999999999999999886421100
Q ss_pred hhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHH
Q 027352 80 RLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVV 159 (224)
Q Consensus 80 ~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~ 159 (224)
..+......+++||+.||+||||+||++||+.+|..+|.+. ++.+
T Consensus 78 -------------------------~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~----------~~~e 122 (151)
T KOG0027|consen 78 -------------------------TDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL----------TDEE 122 (151)
T ss_pred -------------------------ccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC----------CHHH
Confidence 00001125899999999999999999999999999999766 4778
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
+++|++.+|.|+||.|+|+||+++|..
T Consensus 123 ~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 123 CKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 999999999999999999999999863
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.91 E-value=2.8e-24 Score=177.66 Aligned_cols=131 Identities=21% Similarity=0.276 Sum_probs=114.7
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQ 79 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~ 79 (224)
..+|..||+|+ |.|++. |..+|+.+|.. |+++ ++.+|+ ... |. |+|.|+|.||+.+|...+
T Consensus 23 keaF~l~D~d~~G~I~~~el~~ilr~lg~~----~s~~--ei~~l~----~~~-d~-~~~~idf~~Fl~~ms~~~----- 85 (160)
T COG5126 23 KEAFQLFDRDSDGLIDRNELGKILRSLGFN----PSEA--EINKLF----EEI-DA-GNETVDFPEFLTVMSVKL----- 85 (160)
T ss_pred HHHHHHhCcCCCCCCcHHHHHHHHHHcCCC----CcHH--HHHHHH----Hhc-cC-CCCccCHHHHHHHHHHHh-----
Confidence 46899999996 999999 99999999988 8887 999999 474 88 999999999999987421
Q ss_pred hhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHH
Q 027352 80 RLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVV 159 (224)
Q Consensus 80 ~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~ 159 (224)
+. ...+ +++..||+.||+|+||+||..||+.+|+.+|..+ .+++
T Consensus 86 --~~--------------------~~~~----Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~----------~dee 129 (160)
T COG5126 86 --KR--------------------GDKE----EELREAFKLFDKDHDGYISIGELRRVLKSLGERL----------SDEE 129 (160)
T ss_pred --cc--------------------CCcH----HHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC----------CHHH
Confidence 11 1112 5899999999999999999999999999999877 6888
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
++++|+.+|.|+||.|+|+||++++.
T Consensus 130 v~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 130 VEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 99999999999999999999999875
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=4.3e-21 Score=157.68 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=116.8
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
.+|+.||.++ |+|+.+ |..+|+.+|.+ |.+. ++..|+ ..+ |.+|.|.|+|++|+..|..++
T Consensus 37 e~f~lfd~~~~g~iD~~EL~vAmralGFE----~~k~--ei~kll----~d~-dk~~~g~i~fe~f~~~mt~k~------ 99 (172)
T KOG0028|consen 37 EAFELFDPDMAGKIDVEELKVAMRALGFE----PKKE--EILKLL----ADV-DKEGSGKITFEDFRRVMTVKL------ 99 (172)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCC----cchH--HHHHHH----Hhh-hhccCceechHHHHHHHHHHH------
Confidence 5799999996 999999 99999999999 8887 888888 585 999999999999999887432
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
. ..+. +..+..+|+.+|-|++|+||..+|+.+...||+.+ +++++
T Consensus 100 -~---------------------e~dt---~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl----------tD~El 144 (172)
T KOG0028|consen 100 -G---------------------ERDT---KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL----------TDEEL 144 (172)
T ss_pred -h---------------------ccCc---HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc----------cHHHH
Confidence 1 1111 36899999999999999999999999999999877 78999
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 161 SEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 161 ~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.+||.++|.|+||.|+.+||..+|+.
T Consensus 145 ~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 145 MEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHhcccccccccHHHHHHHHhc
Confidence 99999999999999999999999874
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.79 E-value=6.5e-19 Score=138.83 Aligned_cols=131 Identities=17% Similarity=0.308 Sum_probs=107.5
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
..|..+|+++ |+|+.+ |..++..+|.. |..+ .+..++ .. +|.+++|.|+|+||+.++..++
T Consensus 15 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~----~~~~--~~~~~~----~~-~d~~~~g~i~~~ef~~~l~~~~------ 77 (149)
T PTZ00184 15 EAFSLFDKDGDGTITTKELGTVMRSLGQN----PTEA--ELQDMI----NE-VDADGNGTIDFPEFLTLMARKM------ 77 (149)
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCC----CCHH--HHHHHH----Hh-cCcCCCCcCcHHHHHHHHHHhc------
Confidence 5799999996 999999 99999988765 5554 777777 46 5999999999999998765311
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
... .....+..+|+.+|+|++|+|+++|++.++..+|... ...++
T Consensus 78 -~~~------------------------~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~----------~~~~~ 122 (149)
T PTZ00184 78 -KDT------------------------DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKL----------TDEEV 122 (149)
T ss_pred -cCC------------------------cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCC----------CHHHH
Confidence 000 0124688999999999999999999999999876433 46779
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 161 SEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 161 ~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
..+|+.+|.|++|.|+|+||+.+|.
T Consensus 123 ~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 123 DEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 9999999999999999999998874
No 5
>PTZ00183 centrin; Provisional
Probab=99.79 E-value=5.1e-19 Score=141.48 Aligned_cols=132 Identities=17% Similarity=0.315 Sum_probs=108.6
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
.+|..+|+++ |+|+.. |..+++.+|.. ++.. ++..++ .. .|.+++|.|+|+||+.++...
T Consensus 21 ~~F~~~D~~~~G~i~~~e~~~~l~~~g~~----~~~~--~~~~l~----~~-~d~~~~g~i~~~eF~~~~~~~------- 82 (158)
T PTZ00183 21 EAFDLFDTDGSGTIDPKELKVAMRSLGFE----PKKE--EIKQMI----AD-VDKDGSGKIDFEEFLDIMTKK------- 82 (158)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCC----CCHH--HHHHHH----HH-hCCCCCCcEeHHHHHHHHHHH-------
Confidence 5799999996 999999 99999988754 5554 777777 57 499999999999999876421
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
.... . ....+..+|+.+|+|++|+|+..|++.++..+|..+ ...++
T Consensus 83 ~~~~--------------------~----~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l----------~~~~~ 128 (158)
T PTZ00183 83 LGER--------------------D----PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETI----------TDEEL 128 (158)
T ss_pred hcCC--------------------C----cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC----------CHHHH
Confidence 0000 0 124788999999999999999999999999877544 56779
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 161 SEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 161 ~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
..+|..+|.|++|.|+|+||+.+|..
T Consensus 129 ~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 129 QEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999999998864
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.69 E-value=2.1e-16 Score=129.45 Aligned_cols=128 Identities=18% Similarity=0.320 Sum_probs=111.6
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQ 79 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~ 79 (224)
+.+|..+|.|. |.|.++ |+..+.+||.. ++.+ +|..|+ .+ .+|.|+|.-|+.++..
T Consensus 35 KEAF~~mDqnrDG~IdkeDL~d~~aSlGk~----~~d~--elDaM~----~E-----a~gPINft~FLTmfGe------- 92 (171)
T KOG0031|consen 35 KEAFNLMDQNRDGFIDKEDLRDMLASLGKI----ASDE--ELDAMM----KE-----APGPINFTVFLTMFGE------- 92 (171)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHcCCC----CCHH--HHHHHH----Hh-----CCCCeeHHHHHHHHHH-------
Confidence 46899999995 999999 99999999988 6666 888888 35 7899999999999863
Q ss_pred hhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHH
Q 027352 80 RLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVV 159 (224)
Q Consensus 80 ~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~ 159 (224)
++.. .+.+ +.+..||+.||.++.|.|..+.||++|.+.|.++ ++++
T Consensus 93 kL~g--------------------tdpe----~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~----------~~eE 138 (171)
T KOG0031|consen 93 KLNG--------------------TDPE----EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF----------TDEE 138 (171)
T ss_pred HhcC--------------------CCHH----HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC----------CHHH
Confidence 3331 1123 6899999999999999999999999999999888 6788
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
+++|++.+-.|..|.|+|.+|..+|+
T Consensus 139 V~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 139 VDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999886
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.68 E-value=2.2e-16 Score=127.33 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=106.5
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccC--CCcccCHHHHHHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDE--HGKPVSQETFLVEFKKIADCV 77 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~d--g~G~Id~~EFl~~~~~~~~~~ 77 (224)
.++|..||+.+ |+|+.. .+.+|+.||++ ||.. ++.+-+ .+. +.+ +-..|+|++|+-+++ .+
T Consensus 14 ke~F~lfD~~gD~ki~~~q~gdvlRalG~n----PT~a--eV~k~l----~~~-~~~~~~~~rl~FE~fLpm~q----~v 78 (152)
T KOG0030|consen 14 KEAFLLFDRTGDGKISGSQVGDVLRALGQN----PTNA--EVLKVL----GQP-KRREMNVKRLDFEEFLPMYQ----QV 78 (152)
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHhcCC----CcHH--HHHHHH----cCc-ccchhhhhhhhHHHHHHHHH----HH
Confidence 57999999996 999999 99999999999 9998 777776 453 555 458899999997654 34
Q ss_pred HHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHH
Q 027352 78 AQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMD 157 (224)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d 157 (224)
+..-.. ..+ ...-+-++.||++|+|.|...|||++|.++|..+ ++
T Consensus 79 aknk~q------------------------~t~-edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl----------~e 123 (152)
T KOG0030|consen 79 AKNKDQ------------------------GTY-EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL----------TE 123 (152)
T ss_pred Hhcccc------------------------CcH-HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc----------cH
Confidence 443211 111 3566679999999999999999999999999988 56
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 158 VVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 158 ~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
.+.+.++... .|.+|.|+|+.|++.+.
T Consensus 124 eEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 124 EEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 7788888665 47789999999998764
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.61 E-value=3.7e-15 Score=126.39 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=103.6
Q ss_pred ccccccccc-C-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcc-cCHHHHHHHHHHHHHHHH
Q 027352 3 SIFSQIESP-D-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKP-VSQETFLVEFKKIADCVA 78 (224)
Q Consensus 3 ~~F~~~D~d-~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~-Id~~EFl~~~~~~~~~~~ 78 (224)
..|..+|++ + |.|+++ +..+. .+..+ | -..+++ .. .+.+++|. |+|++|+..+.-+..
T Consensus 37 ~rF~kl~~~~~~g~lt~eef~~i~-~~~~N----p-----~~~rI~----~~-f~~~~~~~~v~F~~Fv~~ls~f~~--- 98 (187)
T KOG0034|consen 37 ERFKKLDRNNGDGYLTKEEFLSIP-ELALN----P-----LADRII----DR-FDTDGNGDPVDFEEFVRLLSVFSP--- 98 (187)
T ss_pred HHHHHhccccccCccCHHHHHHHH-HHhcC----c-----HHHHHH----HH-HhccCCCCccCHHHHHHHHhhhcC---
Confidence 368889999 7 999999 99888 33333 3 334566 36 38888888 999999998753210
Q ss_pred HhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHH
Q 027352 79 QRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDV 158 (224)
Q Consensus 79 ~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~ 158 (224)
...-...+.=||+++|.|++|+|+++|+..++..+-... ... ++++...
T Consensus 99 ----------------------------~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~-~~~--~~e~~~~ 147 (187)
T KOG0034|consen 99 ----------------------------KASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGEN-DDM--SDEQLED 147 (187)
T ss_pred ----------------------------CccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccC-Ccc--hHHHHHH
Confidence 000114788999999999999999999999999853211 111 4677788
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 159 VVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 159 ~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.++..|.++|.|+||.||++||.+.+.+
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 9999999999999999999999998864
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.55 E-value=3.7e-14 Score=121.86 Aligned_cols=127 Identities=15% Similarity=0.149 Sum_probs=108.7
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQ 79 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~ 79 (224)
+..|...|+|+ |.|+.. |.++|...+.. |.+. .-++-|| .- .|.+.+|+|+|.||.+++..
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~----~Fs~-~TcrlmI----~m-fd~~~~G~i~f~EF~~Lw~~------- 122 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWS----PFSI-ETCRLMI----SM-FDRDNSGTIGFKEFKALWKY------- 122 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCC----CCCH-HHHHHHH----HH-hcCCCCCccCHHHHHHHHHH-------
Confidence 56799999997 999999 99999977766 8887 2566666 45 59999999999999998753
Q ss_pred hhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHH
Q 027352 80 RLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVV 159 (224)
Q Consensus 80 ~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~ 159 (224)
-+.-+..|+.+|+|++|.|+..||+.+|..+|-.+ ....
T Consensus 123 -------------------------------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L----------spq~ 161 (221)
T KOG0037|consen 123 -------------------------------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL----------SPQF 161 (221)
T ss_pred -------------------------------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC----------CHHH
Confidence 13677899999999999999999999999999655 4667
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
++-+++++|.-++|.|.|++|+++...
T Consensus 162 ~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 162 YNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHhccccCCceeHHHHHHHHHH
Confidence 999999999888999999999998753
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=2e-13 Score=116.28 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=98.0
Q ss_pred CCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeec
Q 027352 12 DGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAH 90 (224)
Q Consensus 12 ~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~ 90 (224)
+|.++.+ ++.++.++. |..+...+.+.+ +..+ |.|+||.|+|.||+.+++-..
T Consensus 41 ~G~~~~~~F~~i~~~~f------p~gd~~~y~~~v---F~~f-D~~~dg~i~F~Efi~als~~~---------------- 94 (193)
T KOG0044|consen 41 SGRLTLEEFREIYASFF------PDGDASKYAELV---FRTF-DKNKDGTIDFLEFICALSLTS---------------- 94 (193)
T ss_pred CCccCHHHHHHHHHHHC------CCCCHHHHHHHH---HHHh-cccCCCCcCHHHHHHHHHHHc----------------
Confidence 5999999 999999887 434322444444 3674 999999999999998875211
Q ss_pred ccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCC-CCCCchhhHHHHHHHHHHHhcC
Q 027352 91 SENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGL-PPIGAVAQMDVVVSEAFKMVNA 169 (224)
Q Consensus 91 ~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~-p~~~~~e~~d~~~~e~f~~~D~ 169 (224)
.| .....++=+|+++|.||||+||+.|+-.+++++-.-.|- .-+..++.....++.+|+++|.
T Consensus 95 -----rG-----------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~ 158 (193)
T KOG0044|consen 95 -----RG-----------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDK 158 (193)
T ss_pred -----CC-----------cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCC
Confidence 00 112467778999999999999999999999885332221 0012333446779999999999
Q ss_pred CCCCccCHHHHHHHHH
Q 027352 170 DDGKLVKEDEFKKLLT 185 (224)
Q Consensus 170 DgDG~Is~eEF~~lm~ 185 (224)
|+||.|+++||+...+
T Consensus 159 n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 159 NKDGKLTLEEFIEGCK 174 (193)
T ss_pred CCCCcccHHHHHHHhh
Confidence 9999999999998876
No 11
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.50 E-value=1e-13 Score=104.57 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=64.0
Q ss_pred HHHHHHhhcCCC-CCCCccCHHHHHHHHHH-hhhhcCCCCCCchhhHH-HHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPK-DRNGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMD-VVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 112 ~~l~~aF~~~D~-DgdG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d-~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
..+..+|+.||+ |++|+|+.+||+.+|.. +|..+ ++ .++++||+.+|.|+||.|+|+||+.+|..+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l----------s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL----------KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc----------cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 378899999999 99999999999999998 88644 23 6799999999999999999999999998886
Q ss_pred HHHHHh
Q 027352 189 GSIMLQ 194 (224)
Q Consensus 189 ~~~a~~ 194 (224)
.+...+
T Consensus 78 ~~~~~~ 83 (89)
T cd05022 78 KAVKGE 83 (89)
T ss_pred HHHHHH
Confidence 665544
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.48 E-value=7.6e-14 Score=97.58 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=58.4
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLL 184 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm 184 (224)
.++.+|+.+|+|+||+|+.+||+.++..++.... +++.+..+..+|+.+|.|+||.|+++||.++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~------~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS------DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST------HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc------HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999885442 45567889999999999999999999999886
No 13
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.43 E-value=9e-13 Score=122.16 Aligned_cols=126 Identities=13% Similarity=0.258 Sum_probs=105.8
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
.+|+.||.++ |.++.. |.+++.+|..-. |... -...++ +. .|.|.+|.+||+||...+..
T Consensus 18 ~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~---~~~~--~~~~l~----~~-~d~~~dg~vDy~eF~~Y~~~-------- 79 (463)
T KOG0036|consen 18 CLFKELDSKNDGQVDLDQLEKGLEKLDHPK---PNYE--AAKMLF----SA-MDANRDGRVDYSEFKRYLDN-------- 79 (463)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHhcCCCC---CchH--HHHHHH----Hh-cccCcCCcccHHHHHHHHHH--------
Confidence 5799999986 999999 999999887541 2222 344444 67 59999999999999876542
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
.| .++...|+.+|.|+||.|..+|+...|+.+|..+ .++..
T Consensus 80 -------------------------~E----~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l----------~de~~ 120 (463)
T KOG0036|consen 80 -------------------------KE----LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL----------SDEKA 120 (463)
T ss_pred -------------------------hH----HHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc----------CHHHH
Confidence 02 5788999999999999999999999999999776 57779
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 161 SEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 161 ~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
+.+|+..|.||++.|+++||...+.
T Consensus 121 ~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 121 AKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHhccCCCeeeccHHHHhhhh
Confidence 9999999999999999999998876
No 14
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.39 E-value=2.3e-12 Score=97.40 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=59.1
Q ss_pred HHHHHHhhcCC-CCCCC-ccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 112 KTMTAALENVP-KDRNG-KLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 112 ~~l~~aF~~~D-~DgdG-~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
..+.++|..|| +|||| +||.+||+.+|.. ++..++..+ .+.+|+++++++|.|+||.|+|+||+.+|..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~------~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK------DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc------CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 36888999999 89999 5999999999976 444332211 356799999999999999999999999998774
Q ss_pred H
Q 027352 189 G 189 (224)
Q Consensus 189 ~ 189 (224)
-
T Consensus 84 ~ 84 (93)
T cd05026 84 V 84 (93)
T ss_pred H
Confidence 3
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.38 E-value=2e-12 Score=97.04 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=58.7
Q ss_pred HHHHHhhcCC-CCCCC-ccCHHHHHHHHHH-----hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 113 TMTAALENVP-KDRNG-KLSKDYLRVAVDA-----VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 113 ~l~~aF~~~D-~DgdG-~Is~~ELr~~l~~-----lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
.+.++|+.|| +|||| +|+.+||+.+|++ +|... +..+++++|+.+|.|+||.|+|+||+.++.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~----------~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK----------EQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC----------CHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 7889999998 89999 5999999999998 55422 456799999999999999999999999998
Q ss_pred HHHH
Q 027352 186 EILG 189 (224)
Q Consensus 186 ~~l~ 189 (224)
.+..
T Consensus 79 ~~~~ 82 (88)
T cd05027 79 MVTT 82 (88)
T ss_pred HHHH
Confidence 7654
No 16
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.36 E-value=4.9e-12 Score=94.80 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHHHHHhhcCC-CCCCCc-cCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 112 KTMTAALENVP-KDRNGK-LSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 112 ~~l~~aF~~~D-~DgdG~-Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
..+.++|+.|| +||+|+ |+..||+.+|+. +|..++..+ +..+++++|+.+|.|++|.|+|+||+.+|..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~------s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK------DADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC------CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 47999999997 999995 999999999985 776554433 456799999999999999999999999987665
Q ss_pred H
Q 027352 189 G 189 (224)
Q Consensus 189 ~ 189 (224)
.
T Consensus 83 ~ 83 (92)
T cd05025 83 V 83 (92)
T ss_pred H
Confidence 3
No 17
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.31 E-value=9.2e-12 Score=93.77 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=59.2
Q ss_pred HHHHHHhhcCCC-CC-CCccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 112 KTMTAALENVPK-DR-NGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 112 ~~l~~aF~~~D~-Dg-dG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
..+..+|+.||. || +|+|+.+||+.+|.. +|..+|..+ ++.+++++|+.+|.|+||.|+|+||+++|...
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~------s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK------DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc------cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 478999999997 98 699999999999986 554444433 46679999999999999999999999988754
No 18
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.25 E-value=2.5e-11 Score=84.21 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=56.0
Q ss_pred HHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 027352 115 TAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGS 190 (224)
Q Consensus 115 ~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~ 190 (224)
+++|+.+|+|++|+|+.+||+.++..+| . +..+++++|+.+|.|++|.|+|+||+.++..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g----~--------~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG----L--------PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC----C--------CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998765 2 35569999999999999999999999999776543
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=3.4e-11 Score=97.73 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=62.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILG 189 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~ 189 (224)
..+.++|+.||+|++|+|+..||..+|+.+|... +..++..+++++|.||||.|+++||+.+|.....
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~----------t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP----------TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC----------CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 5799999999999999999999999999988643 6788999999999999999999999999986654
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.19 E-value=6e-11 Score=89.05 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=58.1
Q ss_pred HHHHHhhcCCC-CC-CCccCHHHHHHHHHH---hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 113 TMTAALENVPK-DR-NGKLSKDYLRVAVDA---VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 113 ~l~~aF~~~D~-Dg-dG~Is~~ELr~~l~~---lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
.+-..|..+|. || +|+|+.+||+.+|.. +|... ++.+++++|+.+|.|+||.|+|+||+.+|..+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~----------t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL----------QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 57789999998 88 999999999999974 45433 56779999999999999999999999999876
Q ss_pred HHH
Q 027352 188 LGS 190 (224)
Q Consensus 188 l~~ 190 (224)
..+
T Consensus 81 ~~~ 83 (88)
T cd05029 81 ALI 83 (88)
T ss_pred HHH
Confidence 544
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.17 E-value=1.9e-10 Score=85.05 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=60.4
Q ss_pred HHHHHHhhcCCC--CCCCccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPK--DRNGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 112 ~~l~~aF~~~D~--DgdG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
+.+..+|..||+ |++|+|+.+||+.++.. +|..++.++ ++.+++++++.+|.|++|.|+|+||+.++....
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~------~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQK------DPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCC------CHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 468899999999 89999999999999986 564433211 466799999999999999999999999998764
Q ss_pred H
Q 027352 189 G 189 (224)
Q Consensus 189 ~ 189 (224)
.
T Consensus 82 ~ 82 (88)
T cd00213 82 V 82 (88)
T ss_pred H
Confidence 4
No 22
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2e-11 Score=110.28 Aligned_cols=145 Identities=15% Similarity=0.125 Sum_probs=102.2
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhh-hhhhhhccccCCCcccCHHHHHHHHHHHHHHHHH
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIV-EPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQ 79 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~-~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~ 79 (224)
.-|+.-|.|+ |.+|++ |...|. |-.- +.+..++ ...|... |.||+|.|+++||+.-|-.
T Consensus 167 ~rFk~AD~d~dg~lt~EEF~aFLH---------PEe~-p~M~~iVi~Etl~d~-Dkn~DG~I~~eEfigd~~~------- 228 (325)
T KOG4223|consen 167 ERFKAADQDGDGSLTLEEFTAFLH---------PEEH-PHMKDIVIAETLEDI-DKNGDGKISLEEFIGDLYS------- 228 (325)
T ss_pred HHHhhcccCCCCcccHHHHHhccC---------hhhc-chHHHHHHHHHHhhc-ccCCCCceeHHHHHhHHhh-------
Confidence 4588899996 999999 988885 3221 2444443 3566884 9999999999999976532
Q ss_pred hhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHH
Q 027352 80 RLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVV 159 (224)
Q Consensus 80 ~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~ 159 (224)
.-. .-.++.=+..+-...|...|+|+||+|+.+||++++.--+- .-...+
T Consensus 229 ~~~--------------------~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~----------d~A~~E 278 (325)
T KOG4223|consen 229 HEG--------------------NEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ----------DHAKAE 278 (325)
T ss_pred ccC--------------------CCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc----------cHHHHH
Confidence 100 01111111223446677779999999999999988843221 114677
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHhh
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLTEILGSIMLQL 195 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~a~~l 195 (224)
++-++-+.|.|+||++|++|.+.--.-|.++.|..-
T Consensus 279 A~hL~~eaD~dkD~kLs~eEIl~~~d~FvgSqAtdy 314 (325)
T KOG4223|consen 279 ARHLLHEADEDKDGKLSKEEILEHYDVFVGSQATDY 314 (325)
T ss_pred HHHHhhhhccCccccccHHHHhhCcceeeeeecccc
Confidence 999999999999999999999877666666655443
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.16 E-value=1.6e-10 Score=87.23 Aligned_cols=74 Identities=16% Similarity=0.334 Sum_probs=61.8
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
..+..+|+.||+|++|+|+.+||+.+|...| + ...+++++|+.+|.|++|.|+|+||+.+|.. +
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~--------~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~----~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----L--------PQTLLAKIWNLADIDNDGELDKDEFALAMHL----I 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----C--------CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH----H
Confidence 5799999999999999999999999998854 3 3456999999999999999999999977654 4
Q ss_pred HHhhcCCCeE
Q 027352 192 MLQLEGNPIA 201 (224)
Q Consensus 192 a~~l~~~pi~ 201 (224)
+...-|.||-
T Consensus 74 ~~~~~g~~~~ 83 (96)
T smart00027 74 YRKLNGYPIP 83 (96)
T ss_pred HHHHcCCCCC
Confidence 4445577664
No 24
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.14 E-value=1.5e-10 Score=87.11 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=57.7
Q ss_pred HHHHHHhhc-CCCCCCC-ccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 112 KTMTAALEN-VPKDRNG-KLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 112 ~~l~~aF~~-~D~DgdG-~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
..+..+|+. +|+||+| +||++||+.+|......+. .....+.+|+++|+.+|.|+||.|+|+||+++|..+.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~-----~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT-----KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh-----cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 368889999 8999987 9999999999987532220 0011356799999999999999999999999998763
No 25
>PLN02964 phosphatidylserine decarboxylase
Probab=99.14 E-value=1.2e-10 Score=114.54 Aligned_cols=95 Identities=9% Similarity=0.123 Sum_probs=75.6
Q ss_pred ccccccccccC-CcccHHHHHHHHHhhh-hcCCCCCCCH-HHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDFIIKALDKLTV-EQGMPPSSDS-WVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVA 78 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~L~~~l~~lg~-~~g~~p~~~~-~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~ 78 (224)
..+|+.||+|+ |+| |+.+++.+|. . |++.. ..+++++ .. +|.|++|.|+|+||+.+|..
T Consensus 146 keaF~lfD~dgdG~i---Lg~ilrslG~~~----pte~e~~fi~~mf----~~-~D~DgdG~IdfdEFl~lL~~------ 207 (644)
T PLN02964 146 CESFDLLDPSSSNKV---VGSIFVSCSIED----PVETERSFARRIL----AI-VDYDEDGQLSFSEFSDLIKA------ 207 (644)
T ss_pred HHHHHHHCCCCCCcC---HHHHHHHhCCCC----CCHHHHHHHHHHH----HH-hCCCCCCeEcHHHHHHHHHH------
Confidence 35799999996 997 8888999984 5 77761 1267777 57 49999999999999998752
Q ss_pred HhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHH
Q 027352 79 QRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDA 140 (224)
Q Consensus 79 ~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~ 140 (224)
+... ..+ +.+..+|+.||+|++|+|+.+||+.+|..
T Consensus 208 --lg~~--------------------~se----EEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 208 --FGNL--------------------VAA----NKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred --hccC--------------------CCH----HHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 1110 112 47999999999999999999999999988
No 26
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.05 E-value=2e-09 Score=84.91 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeeeccccccccc--chhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHH
Q 027352 63 QETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGS--GIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDA 140 (224)
Q Consensus 63 ~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs--~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~ 140 (224)
..+|-.-|.+|+..+-.++.... . ..|. .+.... .......+.-+|..+|+|+||+||++||..+.
T Consensus 7 l~~~~~R~~dW~~~~~~~~~~~~------~--~~~~~~~~~~~~--~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-- 74 (116)
T cd00252 7 LADFPLRLRDWFKNVHEDLKERD------E--LEKHKLRLKKSL--YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR-- 74 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc------c--chhhhchhhhhh--hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--
Confidence 45666667777766666554310 0 0000 011111 12334678999999999999999999999876
Q ss_pred hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 027352 141 VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLL 184 (224)
Q Consensus 141 lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm 184 (224)
++. ....+..+|+.+|.|+||.||++||..++
T Consensus 75 l~~------------~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 75 LDP------------NEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred ccc------------hHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 221 35558899999999999999999999987
No 27
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=89.11 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=81.2
Q ss_pred hccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccC
Q 027352 51 SCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLS 130 (224)
Q Consensus 51 ~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is 130 (224)
++.-.||.|-++|+.|+.+++ +..+++.+- -.+.-||+.+|-|+|++|.
T Consensus 78 e~FSeDG~GnlsfddFlDmfS-V~sE~APrd------------------------------lK~~YAFkIYDfd~D~~i~ 126 (189)
T KOG0038|consen 78 EVFSEDGRGNLSFDDFLDMFS-VFSEMAPRD------------------------------LKAKYAFKIYDFDGDEFIG 126 (189)
T ss_pred HHhccCCCCcccHHHHHHHHH-HHHhhChHH------------------------------hhhhheeEEeecCCCCccc
Confidence 335788999999999999886 444444431 3566799999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 131 KDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 131 ~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.+.|...+.++-. -++ ++++....|+.+|.++|.||||++++.||..++..
T Consensus 127 ~~DL~~~l~~lTr-~eL----s~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 127 HDDLEKTLTSLTR-DEL----SDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHHHhh-ccC----CHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 9999999998752 122 35677888999999999999999999999998863
No 28
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.04 E-value=1.1e-09 Score=102.74 Aligned_cols=147 Identities=14% Similarity=0.208 Sum_probs=107.1
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
..|..+|.+. |+|+.. +..+|++...- |+|.-. +. .+++-.+.||.+.|.+.+..+.. ....+.
T Consensus 468 ~eF~~~D~~ksG~lsis~Wa~~mE~i~~L-~LPWr~--------L~---~kla~~s~d~~v~Y~~~~~~l~~--e~~~~e 533 (631)
T KOG0377|consen 468 DEFRKYDPKKSGKLSISHWAKCMENITGL-NLPWRL--------LR---PKLANGSDDGKVEYKSTLDNLDT--EVILEE 533 (631)
T ss_pred HHHHhcChhhcCeeeHHHHHHHHHHHhcC-CCcHHH--------hh---hhccCCCcCcceehHhHHHHhhh--hhHHHH
Confidence 4689999996 999999 99999976322 233322 21 33356677889999999887642 111111
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
-|+++..-+... +..++.+|+.+|+|++|.||.+|++.+.+-++.++..+- .+..+
T Consensus 534 ---------------a~~slvetLYr~---ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i------~~~~i 589 (631)
T KOG0377|consen 534 ---------------AGSSLVETLYRN---KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAI------SDDEI 589 (631)
T ss_pred ---------------HHhHHHHHHHhc---hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCc------CHHHH
Confidence 022222222211 257899999999999999999999999999998886654 57778
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 161 SEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 161 ~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
.++-+.+|.|+||.||+.||++.++-.
T Consensus 590 ~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 590 LELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 999999999999999999999988644
No 29
>PTZ00183 centrin; Provisional
Probab=99.02 E-value=3.3e-09 Score=84.54 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=74.9
Q ss_pred hhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCC
Q 027352 48 GIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNG 127 (224)
Q Consensus 48 ~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG 127 (224)
.+.. +|.|++|.|+++||...++. +... + .. ..+..+|+.+|+|++|
T Consensus 22 ~F~~-~D~~~~G~i~~~e~~~~l~~--------~g~~-------------------~-~~----~~~~~l~~~~d~~~~g 68 (158)
T PTZ00183 22 AFDL-FDTDGSGTIDPKELKVAMRS--------LGFE-------------------P-KK----EEIKQMIADVDKDGSG 68 (158)
T ss_pred HHHH-hCCCCCCcccHHHHHHHHHH--------hCCC-------------------C-CH----HHHHHHHHHhCCCCCC
Confidence 3467 49999999999999887642 1100 1 12 4688999999999999
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 128 KLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.|+..|+..++...-... . ....+..+|+.+|.|++|.|+++||...+..
T Consensus 69 ~i~~~eF~~~~~~~~~~~-~--------~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 69 KIDFEEFLDIMTKKLGER-D--------PREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred cEeHHHHHHHHHHHhcCC-C--------cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 999999999886532111 1 2456899999999999999999999988864
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.02 E-value=4.6e-10 Score=75.67 Aligned_cols=52 Identities=19% Similarity=0.416 Sum_probs=46.3
Q ss_pred CCCccCHHHHHHHHHHhhhh-cCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 125 RNGKLSKDYLRVAVDAVAAS-AGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 125 gdG~Is~~ELr~~l~~lg~~-~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
++|+|+++||+.+|..+|.. + ++.+++.+|+.+|.|+||.|+|+||+.+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~----------s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDL----------SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSS----------CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCC----------CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 48999999999999877755 4 5677999999999999999999999999864
No 31
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.99 E-value=1.3e-09 Score=72.09 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=54.0
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLL 184 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm 184 (224)
+..+|+.+|.|++|.|+..|++.++..++... ....+..+|+.+|.|++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL----------SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC----------CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999877433 46778999999999999999999998865
No 32
>PTZ00184 calmodulin; Provisional
Probab=98.98 E-value=7.6e-09 Score=81.19 Aligned_cols=97 Identities=12% Similarity=0.229 Sum_probs=74.5
Q ss_pred hhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCC
Q 027352 48 GIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNG 127 (224)
Q Consensus 48 ~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG 127 (224)
.+.. .|.|++|.|+++||...+.. ++.. .. ...+..+|+.+|.|++|
T Consensus 16 ~F~~-~D~~~~G~i~~~e~~~~l~~--------~~~~-------------------~~-----~~~~~~~~~~~d~~~~g 62 (149)
T PTZ00184 16 AFSL-FDKDGDGTITTKELGTVMRS--------LGQN-------------------PT-----EAELQDMINEVDADGNG 62 (149)
T ss_pred HHHH-HcCCCCCcCCHHHHHHHHHH--------hCCC-------------------CC-----HHHHHHHHHhcCcCCCC
Confidence 3357 49999999999999876531 1111 11 14789999999999999
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 128 KLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.|+.+|+..++...-... . ....+..+|+.+|.|++|.|+.+||..++..
T Consensus 63 ~i~~~ef~~~l~~~~~~~-~--------~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 63 TIDFPEFLTLMARKMKDT-D--------SEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred cCcHHHHHHHHHHhccCC-c--------HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 999999998887532111 0 3455899999999999999999999988864
No 33
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.93 E-value=6.3e-09 Score=77.81 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCC--CCCccCHHHHHHHHH-HhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 027352 113 TMTAALENVPKD--RNGKLSKDYLRVAVD-AVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILG 189 (224)
Q Consensus 113 ~l~~aF~~~D~D--gdG~Is~~ELr~~l~-~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~ 189 (224)
.+...|..++.. ++|+||++||+.+|. .+|..+. ....+.+++++|+.+|.|+||.|+|+||+.+|..+..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t------~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLK------KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhc------cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 577789999855 489999999999997 4553221 0012677999999999999999999999999987754
No 34
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.92 E-value=9e-10 Score=76.78 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=51.5
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEF 70 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~ 70 (224)
..+|+.+|+|+ |+|+.+ |..+++.++.. .+.. ++..++...+.. +|.|+||.|+|+||+.+|
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~----~~~~--~~~~~~~~~~~~-~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRD----MSDE--ESDEMIDQIFRE-FDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSH----STHH--HHHHHHHHHHHH-HTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhccc----ccHH--HHHHHHHHHHHH-hCCCCcCCCcHHHHhccC
Confidence 36899999996 999999 99999999876 3332 667776666688 499999999999998764
No 35
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.90 E-value=3e-09 Score=90.76 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=77.3
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQ 79 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~ 79 (224)
..+|..||+|+ |+|+-. +..++..+-.. ....-++-.+ +- +|.||||.|+++|++.++..++.-+..
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rG------t~eekl~w~F----~l-yD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRG------TLEEKLKWAF----RL-YDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCC------cHHHHhhhhh----ee-ecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 35899999995 999998 88888755322 2111233334 56 799999999999999988765433222
Q ss_pred hhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHH
Q 027352 80 RLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDA 140 (224)
Q Consensus 80 ~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~ 140 (224)
.....++.........+|+.+|+|+||.||.+|+..+...
T Consensus 136 ---------------------~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 136 ---------------------KALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ---------------------ccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 0011233344578999999999999999999999998875
No 36
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1e-08 Score=92.77 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=94.4
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
.+|..+|.++ |.|+.. |..-+.+.-.. --.. +.. +.+.. +|.|.+|.|+++|++..+-....
T Consensus 81 ~l~~~iD~~~Dgfv~~~El~~wi~~s~k~----~v~~--~~~----~~~~~-~d~~~Dg~i~~eey~~~~~~~~~----- 144 (325)
T KOG4223|consen 81 KLVPKIDSDSDGFVTESELKAWIMQSQKK----YVVE--EAA----RRWDE-YDKNKDGFITWEEYLPQTYGRVD----- 144 (325)
T ss_pred HHHhhhcCCCCCceeHHHHHHHHHHHHHH----HHHH--HHH----HHHHH-hccCccceeeHHHhhhhhhhccc-----
Confidence 4688899886 999998 88855533222 0011 222 33357 69999999999999876532100
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhh-hhcCCCCCCchhhHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVA-ASAGLPPIGAVAQMDVV 159 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg-~~~g~p~~~~~e~~d~~ 159 (224)
.|-. ..| +.. -.+.+.....=+..|++-|.||||.++++|+-.+|.-=. .++ ..-+
T Consensus 145 ---~~~~------~~d-~e~---~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M----------~~iV 201 (325)
T KOG4223|consen 145 ---LPDE------FPD-EED---NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHM----------KDIV 201 (325)
T ss_pred ---Cccc------ccc-chh---cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchH----------HHHH
Confidence 0000 000 000 011122223345789999999999999999998885311 122 4567
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
+.+-+..+|.||||.|+++||+.=|..
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 999999999999999999999876643
No 37
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.87 E-value=4.3e-09 Score=79.36 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=52.0
Q ss_pred ccccccccc-cC-CcccHH-HHHHHHH-hhhhcCCCCCC-CHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHH
Q 027352 2 ASIFSQIES-PD-GSMRDF-IIKALDK-LTVEQGMPPSS-DSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKI 73 (224)
Q Consensus 2 ~~~F~~~D~-d~-G~I~~~-L~~~l~~-lg~~~g~~p~~-~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~ 73 (224)
..+|..||+ ++ |+|+.. |+.+|++ ||.. .+. + ++++|+ .. +|.|++|.|+|+||+.+|.+.
T Consensus 11 ~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~----ls~~~--~v~~mi----~~-~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 11 VSNFHKASVKGGKESLTASEFQELLTQQLPHL----LKDVE--GLEEKM----KN-LDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh----ccCHH--HHHHHH----HH-hCCCCCCCCcHHHHHHHHHHH
Confidence 468999999 75 999999 9999999 8855 444 4 888888 57 599999999999999998753
No 38
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=84.11 Aligned_cols=66 Identities=15% Similarity=0.316 Sum_probs=56.4
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
.++++||..||+|++|.|++.||..+|+.+|-.. ++.+|..||..+|. |.|.|+|++|+.+|...+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~----------s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP----------SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC----------cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 5799999999999999999999999999877322 56778888888888 888888888888887655
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.77 E-value=7.7e-09 Score=78.09 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=49.5
Q ss_pred cccccccc-ccC-C-cccHH-HHHHHHH-hhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIE-SPD-G-SMRDF-IIKALDK-LTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D-~d~-G-~I~~~-L~~~l~~-lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
+.+|..|| +|+ | +|++. |+.+|++ ++...+..++.. ++.+|+ +++ |.|++|.|||+||+.+|..
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~--~v~~i~----~el-D~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPM--LVDKIM----NDL-DSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHH--HHHHHH----HHh-CCCCCCCCCHHHHHHHHHH
Confidence 56899999 665 7 69999 9999987 443322224333 788888 685 9999999999999998864
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.74 E-value=1.6e-08 Score=75.70 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=53.6
Q ss_pred cccccccc-ccC-C-cccHH-HHHHHHH-hhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIE-SPD-G-SMRDF-IIKALDK-LTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D-~d~-G-~I~~~-L~~~l~~-lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
.++|+.|| +|+ | +|+.. |+.+|++ +|...+..|+.+ ++++++ +.+ |.|++|.|+|+||+.++..
T Consensus 12 ~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~--~v~~i~----~~~-D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 12 INVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDAD--AVDKIM----KEL-DENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHH--HHHHHH----HHH-CCCCCCcCcHHHHHHHHHH
Confidence 46899997 996 9 59999 9999985 877655557776 888888 574 9999999999999988764
No 41
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.72 E-value=1.7e-08 Score=75.76 Aligned_cols=60 Identities=8% Similarity=0.196 Sum_probs=50.6
Q ss_pred cccccccc-ccC-C-cccHH-HHHHHHH-----hhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIE-SPD-G-SMRDF-IIKALDK-----LTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D-~d~-G-~I~~~-L~~~l~~-----lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
+.+|+.|| +|+ | +|+.. |+.+|++ +|.. ++.+ ++++++ +. +|.|++|.|+|+||+.++..
T Consensus 11 ~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~----~~~~--~v~~~i----~~-~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 11 IDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI----KEQE--VVDKVM----ET-LDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC----CCHH--HHHHHH----HH-hCCCCCCcCcHHHHHHHHHH
Confidence 46899998 785 9 69999 9999998 6655 6665 888888 57 49999999999999988753
No 42
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1e-07 Score=79.03 Aligned_cols=101 Identities=14% Similarity=0.258 Sum_probs=79.4
Q ss_pred hhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCC
Q 027352 47 PGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRN 126 (224)
Q Consensus 47 ~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~Dgd 126 (224)
..+.-+ |.+++|.||++|+-.+|+. ..|.-+. .++.+.-.-+|++|.
T Consensus 37 e~f~lf-d~~~~g~iD~~EL~vAmra----------------------------lGFE~~k----~ei~kll~d~dk~~~ 83 (172)
T KOG0028|consen 37 EAFELF-DPDMAGKIDVEELKVAMRA----------------------------LGFEPKK----EEILKLLADVDKEGS 83 (172)
T ss_pred HHHHhh-ccCCCCcccHHHHHHHHHH----------------------------cCCCcch----HHHHHHHHhhhhccC
Confidence 445674 9999999999999555532 1122233 478888889999999
Q ss_pred CccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 027352 127 GKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGS 190 (224)
Q Consensus 127 G~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~ 190 (224)
|+|+.++++..+.. +|..- +.+++..+|+.+|.|++|+||+.+|+.++++.=+.
T Consensus 84 g~i~fe~f~~~mt~k~~e~d----------t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen 138 (172)
T KOG0028|consen 84 GKITFEDFRRVMTVKLGERD----------TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN 138 (172)
T ss_pred ceechHHHHHHHHHHHhccC----------cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc
Confidence 99999999999875 44322 56779999999999999999999999999876553
No 43
>PF14658 EF-hand_9: EF-hand domain
Probab=98.67 E-value=2.8e-08 Score=71.05 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=54.0
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhh-hcCCCCCCCHHHHHHhhhhhhhhccccCCC-cccCHHHHHHHHHHH
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTV-EQGMPPSSDSWVMSNIVEPGIQSCAIDEHG-KPVSQETFLVEFKKI 73 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~-~~g~~p~~~~~el~~i~~~~l~~~~D~dg~-G~Id~~EFl~~~~~~ 73 (224)
.+|+.||+++ |.+... |+..|+.+|. . |++. +++++. ++ .|.+|. |.|+|+.|+.+|++|
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~----p~e~--~Lq~l~----~e-lDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRS----PEES--ELQDLI----NE-LDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCC----CcHH--HHHHHH----HH-hCCCCCCceEeHHHHHHHHHHh
Confidence 4799999997 999999 9999999998 5 7776 999999 58 499999 999999999999865
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.61 E-value=2.7e-07 Score=91.10 Aligned_cols=64 Identities=23% Similarity=0.216 Sum_probs=57.3
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.+..+|+.+|+|+||.|+.+|+..+|..++... .++++.++|+.+|.|+||.|+++||+++|..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~----------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLV----------AANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCC----------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 488999999999999999999999999866322 4667999999999999999999999999877
No 45
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.58 E-value=6.2e-08 Score=72.83 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred ccccccccc-c-C-CcccHH-HHHHHHH-hhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIES-P-D-GSMRDF-IIKALDK-LTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~-d-~-G~I~~~-L~~~l~~-lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
..+|..||. | + |+|+.. |+.+|++ +|...|..++.+ +++.++ .++ |.|++|.|+|+||+.++..
T Consensus 11 ~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~--ei~~~~----~~~-D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 11 ILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPM--AVDKIM----KDL-DQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHH--HHHHHH----HHh-CCCCCCcCcHHHHHHHHHH
Confidence 468999997 7 5 999999 9999986 554344457776 888888 574 9999999999999988763
No 46
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.55 E-value=8.3e-08 Score=72.00 Aligned_cols=60 Identities=8% Similarity=0.222 Sum_probs=49.5
Q ss_pred cccccccccc--C-CcccHH-HHHHHHH---hhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIESP--D-GSMRDF-IIKALDK---LTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~d--~-G~I~~~-L~~~l~~---lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
+++|..||.+ + |+|+.. |+.+|++ +|.. ++.+ ++.+++ +. +|.|++|.|+|+||+.+|.+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k----~t~~--ev~~m~----~~-~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK----LQDA--EIAKLM----ED-LDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC----CCHH--HHHHHH----HH-hcCCCCCCCcHHHHHHHHHH
Confidence 4689999984 3 899999 9999974 4544 6666 899988 57 49999999999999998864
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.53 E-value=7.4e-08 Score=58.09 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 159 VVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 159 ~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
+++++|+.+|.||||.||++||+.+|++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4789999999999999999999999975
No 48
>PF14658 EF-hand_9: EF-hand domain
Probab=98.50 E-value=3e-07 Score=65.76 Aligned_cols=62 Identities=15% Similarity=0.304 Sum_probs=55.3
Q ss_pred HHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCC-CccCHHHHHHHHHH
Q 027352 116 AALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDG-KLVKEDEFKKLLTE 186 (224)
Q Consensus 116 ~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgD-G~Is~eEF~~lm~~ 186 (224)
.+|++||+++.|.|....|...|+.++... | .+.+++.+.+++|.+|. |.|+++.|...|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~--p-------~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRS--P-------EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCC--C-------cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999999988522 1 46789999999999999 99999999999985
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.50 E-value=1.6e-07 Score=69.26 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=51.2
Q ss_pred ccccccccc--cC-CcccHH-HHHHHHH-hhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIES--PD-GSMRDF-IIKALDK-LTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~--d~-G~I~~~-L~~~l~~-lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
..+|..||+ |+ |.|+.. |+.++++ +|...+..++.. +++.|+ .. .|.+++|.|+|+||+.++..
T Consensus 11 ~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~--ei~~i~----~~-~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 11 IDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPE--AVDKIM----KD-LDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHH--HHHHHH----HH-hccCCCCcCcHHHHHHHHHH
Confidence 468999999 75 999999 9999986 665533334455 888888 57 49999999999999998764
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.49 E-value=1.9e-07 Score=64.42 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=48.5
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
.++|..+|+|+ |.|+.+ ++.+++++|. +.+ +++.++ .. .|.+++|.|+|+||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~------~~~--~~~~i~----~~-~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL------PRS--VLAQIW----DL-ADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC------CHH--HHHHHH----HH-hcCCCCCcCCHHHHHHHHHH
Confidence 46899999996 999999 9999998763 233 778888 57 49999999999999998764
No 51
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.49 E-value=6.4e-07 Score=83.96 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 108 FELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 108 ~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
..++..+..+|+.+|+||||+|+.+|+. + ++.+|+.+|.|+||.|+++||.+.+...
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~------~-----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWL------G-----------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHH------H-----------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3456778999999999999999999983 1 4569999999999999999999999876
Q ss_pred HH
Q 027352 188 LG 189 (224)
Q Consensus 188 l~ 189 (224)
+.
T Consensus 387 ~~ 388 (391)
T PRK12309 387 LR 388 (391)
T ss_pred HH
Confidence 64
No 52
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.47 E-value=4.1e-07 Score=78.10 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=57.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
+.+...|+.+|.|.||+|+..||+..|..+|.+ ++.--..+||+++|.|.||+|+|.||.-..+..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap----------QTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP----------QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCc----------hhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 467889999999999999999999999998842 245558999999999999999999998776643
No 53
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.41 E-value=3.8e-07 Score=68.69 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=48.7
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
..+|..||+|+ |.|+.+ |+.+|+++| ++.+ ++..|+ .. +|.+++|.|+|+||+.++..
T Consensus 13 ~~~F~~~D~d~~G~Is~~el~~~l~~~~------~~~~--ev~~i~----~~-~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 13 EQIFRSLDKNQDGTVTGAQAKPILLKSG------LPQT--LLAKIW----NL-ADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHHHHcC------CCHH--HHHHHH----HH-hcCCCCCCcCHHHHHHHHHH
Confidence 36899999996 999999 999999865 3344 778888 57 59999999999999998864
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.39 E-value=2.2e-07 Score=56.03 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHHh
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDAV 141 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~l 141 (224)
+++++|+.+|+||||+||.+|++.+|+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36789999999999999999999999864
No 55
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.38 E-value=1.3e-06 Score=72.11 Aligned_cols=69 Identities=23% Similarity=0.412 Sum_probs=56.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhH-----------------------------HHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQM-----------------------------DVVVSE 162 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~-----------------------------d~~~~e 162 (224)
.++++||..+|.|+||.|.++.|+..|.++|... ++++. ++.+-+
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~------~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA------SDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC------CHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4799999999999999999999999999988422 11111 267888
Q ss_pred HHHHhcCCCCCccCHHHHHHHHHH
Q 027352 163 AFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 163 ~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.|+.+|.+++|.|+.+.+.+++..
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHH
Confidence 899999999999999888777765
No 56
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.35 E-value=5.2e-07 Score=76.74 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=53.9
Q ss_pred ccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 4 IFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 4 ~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
+|+.||.++ |+|+++ +..++..+....... ..+ .+..|++..+.+ +|.|++|.|+|+||..++.+
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e--~~~~i~d~t~~e-~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRMMVGENDDM-SDE--QLEDIVDKTFEE-ADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHH--HHHHHHHHHHHH-hCCCCCCcCcHHHHHHHHHc
Confidence 799999996 999999 999999886652111 123 788999999999 59999999999999988753
No 57
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.33 E-value=4e-06 Score=63.60 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
.+..+|..+-.| .|.+|+.||+..|.. ++.-++ ... ....++++++.+|.|+||+|||+||..++..+.
T Consensus 9 ~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~--~~~----d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 9 KMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLK--NQN----DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHc--CCC----CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456677777654 569999999999975 442121 111 245699999999999999999999999998764
No 58
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.30 E-value=8.9e-07 Score=59.47 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=41.7
Q ss_pred CCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHH
Q 027352 12 DGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFK 71 (224)
Q Consensus 12 ~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~ 71 (224)
+|.|+.+ |+.+|+.+|... ++.. +++.++ .. +|.|++|.|+|+||+.+|.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~---~s~~--e~~~l~----~~-~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKD---LSEE--EVDRLF----RE-FDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSS---SCHH--HHHHHH----HH-HTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCC---CCHH--HHHHHH----Hh-cccCCCCCCCHHHHHHHHH
Confidence 5999999 999998887652 4444 888888 57 5999999999999999875
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.27 E-value=5.8e-07 Score=54.37 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.8
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHH-Hhh
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAVD-AVA 142 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l~-~lg 142 (224)
+..+|+.+|+|+||+|+.+||+.+|+ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 67899999999999999999999999 665
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.27 E-value=9.5e-06 Score=76.44 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=94.0
Q ss_pred ccccccccC-CcccHH-HHHHHHHh--hhhcCC-----CCCCCHHHHHHhhh-hhhhhccccCCCcccCHHHHHHHHHHH
Q 027352 4 IFSQIESPD-GSMRDF-IIKALDKL--TVEQGM-----PPSSDSWVMSNIVE-PGIQSCAIDEHGKPVSQETFLVEFKKI 73 (224)
Q Consensus 4 ~F~~~D~d~-G~I~~~-L~~~l~~l--g~~~g~-----~p~~~~~el~~i~~-~~l~~~~D~dg~G~Id~~EFl~~~~~~ 73 (224)
+|++||.|| |-|+++ +..+.+-. -..+|+ +.+.. .+.-.++ .++.-+...+|+|+++++||+..++.
T Consensus 238 AFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~--s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~- 314 (489)
T KOG2643|consen 238 AFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGN--SFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN- 314 (489)
T ss_pred eeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccc--eehhhhhhhHHHHhhccCCCccccHHHHHHHHHH-
Confidence 799999996 999999 88766322 111111 11111 1111111 12234469999999999999987653
Q ss_pred HHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhh-hhcCCCCCCc
Q 027352 74 ADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVA-ASAGLPPIGA 152 (224)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg-~~~g~p~~~~ 152 (224)
+. .+.++--|..+|+..+|.||...+..+|-.+. ...
T Consensus 315 -------Lq----------------------------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~------- 352 (489)
T KOG2643|consen 315 -------LQ----------------------------EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNS------- 352 (489)
T ss_pred -------HH----------------------------HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccch-------
Confidence 11 13666779999999999999999999987654 211
Q ss_pred hhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 027352 153 VAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGS 190 (224)
Q Consensus 153 ~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~ 190 (224)
+.-...+.++-++++.+ +-.||++||++.. +++..
T Consensus 353 -~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff-~Fl~~ 387 (489)
T KOG2643|consen 353 -KKKHKYLKRVKEKFKDD-GKGISLQEFKAFF-RFLNN 387 (489)
T ss_pred -HhHHHHHHHHHHhccCC-CCCcCHHHHHHHH-HHHhh
Confidence 11345789999999887 6679999999876 34443
No 61
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.24 E-value=6.9e-06 Score=71.11 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=74.8
Q ss_pred HHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhh
Q 027352 40 VMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALE 119 (224)
Q Consensus 40 el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~ 119 (224)
++.... ++ +|.|++|.|+=+|-..++.- ... ..|- . ..++-.-.
T Consensus 58 ~~~~~f----~~-vD~d~sg~i~~~eLq~aLsn--------~~~-----------------~~Fs-~-----~TcrlmI~ 101 (221)
T KOG0037|consen 58 QLAGWF----QS-VDRDRSGRILAKELQQALSN--------GTW-----------------SPFS-I-----ETCRLMIS 101 (221)
T ss_pred HHHHHH----Hh-hCccccccccHHHHHHHhhc--------CCC-----------------CCCC-H-----HHHHHHHH
Confidence 555555 68 49999999999998766430 111 1111 1 35777888
Q ss_pred cCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 120 NVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 120 ~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
+||.|.+|+|...|+...++.+.. |+++|+.+|.|++|.|+..|+.+.+.
T Consensus 102 mfd~~~~G~i~f~EF~~Lw~~i~~----------------Wr~vF~~~D~D~SG~I~~sEL~~Al~ 151 (221)
T KOG0037|consen 102 MFDRDNSGTIGFKEFKALWKYINQ----------------WRNVFRTYDRDRSGTIDSSELRQALT 151 (221)
T ss_pred HhcCCCCCccCHHHHHHHHHHHHH----------------HHHHHHhcccCCCCcccHHHHHHHHH
Confidence 999999999999999999998553 99999999999999999999998886
No 62
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.18 E-value=1.9e-06 Score=56.66 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=47.7
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEF 70 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~ 70 (224)
..+|+.+|.++ |.|+.. ++.+++.++.. ++.+ .+..++ .. .|.+++|.|+|+||+..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~----~~~~--~~~~~~----~~-~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEG----LSEE--EIDEMI----RE-VDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCC----CCHH--HHHHHH----HH-hCCCCCCeEeHHHHHHHh
Confidence 46799999996 999999 99999998744 5554 777777 57 499999999999998653
No 63
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.09 E-value=5.2e-06 Score=62.40 Aligned_cols=65 Identities=6% Similarity=0.047 Sum_probs=46.8
Q ss_pred cccccc-ccccC--CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQ-IESPD--GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~-~D~d~--G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
.++|.. +|+++ |+|+++ |+.++.+..-...-.+..+ .++.+++ ..+ |.|+||.|+|+||+.+|.+
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~-~~~~~ll----~~~-D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDP-GVLDRMM----KKL-DLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCH-HHHHHHH----HHc-CCCCCCcCcHHHHHHHHHH
Confidence 468998 77874 499999 9999987531100001121 2778887 584 9999999999999998764
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.09 E-value=4.1e-06 Score=62.51 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=47.5
Q ss_pred cccccccccc--C-CcccHH-HHHHHH-HhhhhcCCCCC--CCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIESP--D-GSMRDF-IIKALD-KLTVEQGMPPS--SDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~d--~-G~I~~~-L~~~l~-~lg~~~g~~p~--~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
+..|..++.. + |+|++. |+.+|. .+|.. ++ ....+++.++ .. .|.|++|.|+|+||+.++..
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~----~t~~~~~~~v~~i~----~~-~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF----LKKEKNQKAIDKIF----ED-LDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh----hccCCCHHHHHHHH----HH-cCCCCCCcCcHHHHHHHHHH
Confidence 4678999876 2 899999 999997 45543 33 1112788888 57 49999999999999998864
No 65
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.05 E-value=3.6e-05 Score=72.18 Aligned_cols=94 Identities=10% Similarity=0.197 Sum_probs=74.5
Q ss_pred hhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCC
Q 027352 47 PGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRN 126 (224)
Q Consensus 47 ~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~Dgd 126 (224)
..++.+ |.+++|.||..+-...+.. ++- .+.. .+.+...|+.+|.|.|
T Consensus 18 ~lf~~l-D~~~~g~~d~~~l~k~~~~--------l~~--------------------~~~~---~~~~~~l~~~~d~~~d 65 (463)
T KOG0036|consen 18 CLFKEL-DSKNDGQVDLDQLEKGLEK--------LDH--------------------PKPN---YEAAKMLFSAMDANRD 65 (463)
T ss_pred HHHHHh-ccCCCCceeHHHHHHHHHh--------cCC--------------------CCCc---hHHHHHHHHhcccCcC
Confidence 334685 9999999999998866542 110 0011 2478889999999999
Q ss_pred CccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 127 GKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 127 G~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
|.++.+|++..+.. .+..+.++|+.+|.|+||.|+..|..+.++..
T Consensus 66 g~vDy~eF~~Y~~~---------------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 66 GRVDYSEFKRYLDN---------------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL 111 (463)
T ss_pred CcccHHHHHHHHHH---------------hHHHHHHHHhhhccccCCccCHHHHHHHHHHh
Confidence 99999999999976 35568899999999999999999998887754
No 66
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.99 E-value=3.5e-05 Score=80.99 Aligned_cols=132 Identities=13% Similarity=0.186 Sum_probs=91.8
Q ss_pred cccccccc-CCcccHH-HHHHHHHhhhhcCC-CCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 4 IFSQIESP-DGSMRDF-IIKALDKLTVEQGM-PPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 4 ~F~~~D~d-~G~I~~~-L~~~l~~lg~~~g~-~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
+|+.||++ +|.++.. ++.+|+++|++.-| .-+.+.++++.++ .-+ |.+.+|.|+..+|++.|-+ ..
T Consensus 2258 ~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~l----d~v-DP~r~G~Vsl~dY~afmi~------~E 2326 (2399)
T KOG0040|consen 2258 MFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEIL----DLV-DPNRDGYVSLQDYMAFMIS------KE 2326 (2399)
T ss_pred HHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHH----Hhc-CCCCcCcccHHHHHHHHHh------cc
Confidence 69999999 5999999 99999999999511 1122334788888 474 9999999999999998743 11
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
...+++++ .++.||+.+|. |--|+++.++...|..-. .+--+
T Consensus 2327 -------------------TeNI~s~~-----eIE~AfraL~a-~~~yvtke~~~~~ltreq-------------aefc~ 2368 (2399)
T KOG0040|consen 2327 -------------------TENILSSE-----EIEDAFRALDA-GKPYVTKEELYQNLTREQ-------------AEFCM 2368 (2399)
T ss_pred -------------------cccccchH-----HHHHHHHHhhc-CCccccHHHHHhcCCHHH-------------HHHHH
Confidence 11233343 79999999999 889999999866654311 11113
Q ss_pred HHHHHHhcC----CCCCccCHHHHHHHH
Q 027352 161 SEAFKMVNA----DDGKLVKEDEFKKLL 184 (224)
Q Consensus 161 ~e~f~~~D~----DgDG~Is~eEF~~lm 184 (224)
..|=+.+|+ ---+.++|.+|..-+
T Consensus 2369 s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2369 SKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred HHhhhhcccccCCCccccccHHHHHHHH
Confidence 334444454 234568888887543
No 67
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.98 E-value=4.2e-06 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.3
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHH
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAV 138 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l 138 (224)
++++|+.+|+|+||.||.+||+.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999999864
No 68
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=2e-05 Score=62.49 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHhhcCCCCCCCccCHHHHHHHHHHhhh--hcC--CCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHH
Q 027352 116 AALENVPKDRNGKLSKDYLRVAVDAVAA--SAG--LPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKL 183 (224)
Q Consensus 116 ~aF~~~D~DgdG~Is~~ELr~~l~~lg~--~~g--~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~l 183 (224)
..|++.|-|+||+|+-=||..++..... ..| -+|..++.+....++.+++.-|.|+||.|+|-||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5799999999999999999999986532 222 2566777888899999999999999999999999874
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.95 E-value=1.6e-05 Score=75.00 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=42.4
Q ss_pred CCCccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 125 RNGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 125 gdG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
-++.|+..+++.+... .|+++ .+.+++-+|.-+|.|+||.+|++||+.+|++=
T Consensus 401 Ag~~i~~~~f~raa~~vtGveL----------SdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVEL----------SDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCccc----------ccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 4677888888777765 35555 45568889999999999999999999999853
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.94 E-value=8.4e-06 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLL 184 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm 184 (224)
++.+|+.+|.|+||.||++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999999865
No 71
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.87 E-value=4.3e-06 Score=65.60 Aligned_cols=60 Identities=12% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHH
Q 027352 111 DKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKK 182 (224)
Q Consensus 111 ~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~ 182 (224)
...+.=-|..+|+|+||.|++.||+.+...+. | .+.-+...|+..|.|+||.||..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~-----~-------~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM-----P-------PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS-----T-------TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh-----h-------hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 35677789999999999999999998876441 1 123378899999999999999999875
No 72
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.86 E-value=0.00014 Score=69.68 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=86.1
Q ss_pred cccC-CcccHH-H-HHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCC
Q 027352 9 ESPD-GSMRDF-I-IKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQP 85 (224)
Q Consensus 9 D~d~-G~I~~~-L-~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~ 85 (224)
+.++ -..+.+ + +.-+.-++.. ...+ ++..++ ..++|.-.||.|+|+||... +.+ +
T Consensus 46 e~~ge~~mt~edFv~~ylgL~~e~----~~n~--~~v~Ll----a~iaD~tKDglisf~eF~af-e~~-l---------- 103 (694)
T KOG0751|consen 46 EKNGESYMTPEDFVRRYLGLYNES----NFND--KIVRLL----ASIADQTKDGLISFQEFRAF-ESV-L---------- 103 (694)
T ss_pred hhccccccCHHHHHHHHHhhcccc----cCCh--HHHHHH----HhhhhhcccccccHHHHHHH-Hhh-c----------
Confidence 4444 445665 3 3333333433 3344 666666 56689999999999999764 211 1
Q ss_pred eeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHH
Q 027352 86 VIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFK 165 (224)
Q Consensus 86 ~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~ 165 (224)
+..+ .....||..||+.++|.+|-++..+++.....+-.+|-.-+.|. +...|.
T Consensus 104 ------------------C~pD----al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~ef----I~~~Fg 157 (694)
T KOG0751|consen 104 ------------------CAPD----ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEF----IKLHFG 157 (694)
T ss_pred ------------------cCch----HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcch----HHHHhh
Confidence 1111 46778999999999999999999999998766555554433333 444443
Q ss_pred HhcCCCCCccCHHHHHHHHHHHHHHHHH
Q 027352 166 MVNADDGKLVKEDEFKKLLTEILGSIML 193 (224)
Q Consensus 166 ~~D~DgDG~Is~eEF~~lm~~~l~~~a~ 193 (224)
. +.--.++|.||.+++.++.+-=|.
T Consensus 158 ~---~~~r~~ny~~f~Q~lh~~~~E~~~ 182 (694)
T KOG0751|consen 158 D---IRKRHLNYAEFTQFLHEFQLEHAE 182 (694)
T ss_pred h---HHHHhccHHHHHHHHHHHHHHHHH
Confidence 3 233358888888888877654333
No 73
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.83 E-value=6.4e-05 Score=72.32 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=64.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
..+.+.|..+| |++|+++..||..++...+...|- ...+++++++.+.+.|.+|+|+||||+..+......-
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~-------~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGY-------FVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccc-------hhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 46889999999 999999999999999987754442 3577899999999999999999999999877666554
Q ss_pred HHhhc
Q 027352 192 MLQLE 196 (224)
Q Consensus 192 a~~l~ 196 (224)
+..++
T Consensus 91 ~~k~~ 95 (627)
T KOG0046|consen 91 IAKIG 95 (627)
T ss_pred hhhhc
Confidence 44333
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.80 E-value=5.7e-05 Score=70.99 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=52.5
Q ss_pred HHHHHH-HhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccc
Q 027352 19 IIKALD-KLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDG 97 (224)
Q Consensus 19 L~~~l~-~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG 97 (224)
|+..++ ++....|.++... .+..++ .. +|.||||.|+++||+.
T Consensus 315 L~~~i~~~~~~~~~~~~~~~--~l~~aF----~~-~D~dgdG~Is~~E~~~----------------------------- 358 (391)
T PRK12309 315 LEKLLAHRLARLEGGEAFTH--AAQEIF----RL-YDLDGDGFITREEWLG----------------------------- 358 (391)
T ss_pred HHHHHHHHHHHhhccChhhH--HHHHHH----HH-hCCCCCCcCcHHHHHH-----------------------------
Confidence 444444 3443445556665 666666 56 5999999999999952
Q ss_pred cchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHH
Q 027352 98 SGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDA 140 (224)
Q Consensus 98 s~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~ 140 (224)
+..+|+.+|+|+||+||.+|++.++..
T Consensus 359 ----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 359 ----------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ----------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 234799999999999999999999875
No 75
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.79 E-value=2.3e-05 Score=61.90 Aligned_cols=53 Identities=17% Similarity=0.363 Sum_probs=42.4
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHH
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEF 70 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~ 70 (224)
-+|..+|+|+ |.|+++ |..++ ++ |.+. .+..++ ..+ |.|++|.|+++||...+
T Consensus 52 w~F~~lD~d~DG~Ls~~EL~~~~--l~------~~e~--~~~~f~----~~~-D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 52 WMFNQLDGNYDGKLSHHELAPIR--LD------PNEH--CIKPFF----ESC-DLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH--cc------chHH--HHHHHH----HHH-CCCCCCCCCHHHHHHHH
Confidence 4799999996 999999 99766 22 3343 566666 685 99999999999998876
No 76
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.79 E-value=0.00012 Score=56.67 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
..+...|+.+|. ++|+|+-++.+.+|..-| + ....+..+..-+|.|+||.++++||.-.|.=+....
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~----L--------~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG----L--------PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT----S--------SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC----C--------CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 578899999995 689999999999998754 4 356689999999999999999999999997766555
Q ss_pred HH
Q 027352 192 ML 193 (224)
Q Consensus 192 a~ 193 (224)
..
T Consensus 77 ~~ 78 (104)
T PF12763_consen 77 NG 78 (104)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 77
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.73 E-value=4.7e-05 Score=67.56 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcCCCCCCCccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 109 ELDKTMTAALENVPKDRNGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 109 ~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
-....+..+|+..|.|.||+||+.|++.+... ...++ ++..++-+-.|+.+|.||||.|+++||.--+.
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHf--------qeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHF--------QEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHH--------HHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 34567899999999999999999999877654 55666 22345566789999999999999999985543
No 78
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.72 E-value=0.00014 Score=69.12 Aligned_cols=132 Identities=11% Similarity=0.162 Sum_probs=84.6
Q ss_pred ccccccc-CCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhh
Q 027352 5 FSQIESP-DGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLK 82 (224)
Q Consensus 5 F~~~D~d-~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~ 82 (224)
|..+|+| +|.|+++ |..- |..- .+.- -+.+|+...-+.. -.-.+|.+||.+|+-.+- ++-++
T Consensus 284 FweLD~Dhd~lidk~~L~ry----~d~t---lt~~--ivdRIFs~v~r~~-~~~~eGrmdykdFv~Fil----A~e~k-- 347 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRY----GDHT---LTER--IVDRIFSQVPRGF-TVKVEGRMDYKDFVDFIL----AEEDK-- 347 (493)
T ss_pred HhhhccccccccCHHHHHHH----hccc---hhhH--HHHHHHhhccccc-eeeecCcccHHHHHHHHH----HhccC--
Confidence 7889999 5999998 8653 2220 1111 3344442000011 334788899999987542 11111
Q ss_pred cCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhh---hcCCCCCCchhhHHHH
Q 027352 83 EQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAA---SAGLPPIGAVAQMDVV 159 (224)
Q Consensus 83 ~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~---~~g~p~~~~~e~~d~~ 159 (224)
+.+ ..++--|+.+|.||||.|+..||+-+....-. ..|..+.. -+..
T Consensus 348 ----------------------~t~----~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~----fed~ 397 (493)
T KOG2562|consen 348 ----------------------DTP----ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALP----FEDA 397 (493)
T ss_pred ----------------------CCc----cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCccc----HHHH
Confidence 112 46788899999999999999999888776321 12221111 2566
Q ss_pred HHHHHHHhcCCCCCccCHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKK 182 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~ 182 (224)
..+|+..+-.-..|+|+.++|+.
T Consensus 398 l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 398 LCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHHHhCccCCCceeHHHHhh
Confidence 88888888877788999999985
No 79
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.69 E-value=7.2e-05 Score=60.99 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=57.5
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCC--CCCccCHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNAD--DGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~D--gDG~Is~eEF~~lm~~~l 188 (224)
.+++++|..||+.|||+|+....-++|+.+|... ++.++...+.+.+.+ +--+|+||+|+-++..+-
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP----------T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~va 79 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP----------TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVA 79 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC----------cHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHH
Confidence 5899999999999999999999999999988533 677888888888877 667899999998876553
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.65 E-value=0.00013 Score=49.64 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 128 KLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
++|..|++.+|+.+++++ .+..+..+|+++|..++|.++.+||..+.+.
T Consensus 1 kmsf~Evk~lLk~~NI~~----------~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM----------DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT--------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc----------CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 367899999999988766 5788999999999999999999999998764
No 81
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.62 E-value=0.00026 Score=62.91 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=82.4
Q ss_pred cccccccccC-CcccHH-HHH-HHHHhhhhcCCCCCCCHHHHHHhhh---hhhhhccccCCCcccCHHHHHHHHHHHH--
Q 027352 3 SIFSQIESPD-GSMRDF-IIK-ALDKLTVEQGMPPSSDSWVMSNIVE---PGIQSCAIDEHGKPVSQETFLVEFKKIA-- 74 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~-~l~~lg~~~g~~p~~~~~el~~i~~---~~l~~~~D~dg~G~Id~~EFl~~~~~~~-- 74 (224)
.+|+..|.|+ |+|+.. +.+ .|++... .+++-++ -.+..+ |.||+|.|+++||-..+.+..
T Consensus 105 viFsKvDVNtDrkisAkEmqrwImektaE-----------HfqeameeSkthFraV-DpdgDGhvsWdEykvkFlaskgh 172 (362)
T KOG4251|consen 105 VIFSKVDVNTDRKISAKEMQRWIMEKTAE-----------HFQEAMEESKTHFRAV-DPDGDGHVSWDEYKVKFLASKGH 172 (362)
T ss_pred HHHhhcccCccccccHHHHHHHHHHHHHH-----------HHHHHHhhhhhheeee-CCCCCCceehhhhhhHHHhhcCc
Confidence 4799999995 999997 666 4544421 2222222 234674 999999999999976543210
Q ss_pred --HHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCH---------HHHHHHHHHhhh
Q 027352 75 --DCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSK---------DYLRVAVDAVAA 143 (224)
Q Consensus 75 --~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~---------~ELr~~l~~lg~ 143 (224)
..++.... +.++-.+..+. +.|.-=++|.+|+... .|+..+|.- .-
T Consensus 173 sekevadair---------------------lneelkVDeEt-qevlenlkdRwyqaDsppadlllteeEflsFLHP-Eh 229 (362)
T KOG4251|consen 173 SEKEVADAIR---------------------LNEELKVDEET-QEVLENLKDRWYQADSPPADLLLTEEEFLSFLHP-EH 229 (362)
T ss_pred chHHHHHHhh---------------------ccCcccccHHH-HHHHHhhhhhhccccCchhhhhhhHHHHHHHcCh-Hh
Confidence 11111111 11111111122 2244446666666655 666666532 01
Q ss_pred hcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 027352 144 SAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLL 184 (224)
Q Consensus 144 ~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm 184 (224)
..|+ ....++++.+.+|.|||..+|..||+++.
T Consensus 230 Srgm--------LrfmVkeivrdlDqdgDkqlSvpeFislp 262 (362)
T KOG4251|consen 230 SRGM--------LRFMVKEIVRDLDQDGDKQLSVPEFISLP 262 (362)
T ss_pred hhhh--------HHHHHHHHHHHhccCCCeeecchhhhcCC
Confidence 1122 45668889999999999999999999764
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.56 E-value=8.3e-05 Score=44.77 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
+.++|+.+|.|+||.|+++||..++++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 788999999999999999999999985
No 83
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.51 E-value=0.00026 Score=64.98 Aligned_cols=104 Identities=8% Similarity=0.095 Sum_probs=76.4
Q ss_pred HHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhh
Q 027352 40 VMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALE 119 (224)
Q Consensus 40 el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~ 119 (224)
.++.++ .- .|.+++|.+||.|.+.... ++|..- .....+.-+|+
T Consensus 260 ~l~~~f----~L-Fde~~tg~~D~re~v~~la---------------vlc~p~----------------~t~~iiq~afk 303 (412)
T KOG4666|consen 260 KLAPTF----ML-FDEGTTGNGDYRETVKTLA---------------VLCGPP----------------VTPVIIQYAFK 303 (412)
T ss_pred hhhhhh----he-ecCCCCCcccHHHHhhhhe---------------eeeCCC----------------CcHHHHHHHHH
Confidence 444554 56 4999999999999986543 222111 11247888999
Q ss_pred cCCCCCCCccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Q 027352 120 NVPKDRNGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSIM 192 (224)
Q Consensus 120 ~~D~DgdG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~a 192 (224)
.|+.+-||.+...+|.-+|+. +| ++ +-.+.-+|+.++...||+|+|++|.+++. ...++|
T Consensus 304 ~f~v~eDg~~ge~~ls~ilq~~lg----v~--------~l~v~~lf~~i~q~d~~ki~~~~f~~fa~-~~p~~a 364 (412)
T KOG4666|consen 304 RFSVAEDGISGEHILSLILQVVLG----VE--------VLRVPVLFPSIEQKDDPKIYASNFRKFAA-TEPNLA 364 (412)
T ss_pred hcccccccccchHHHHHHHHHhcC----cc--------eeeccccchhhhcccCcceeHHHHHHHHH-hCchhh
Confidence 999999999999999888875 34 21 12245689999999999999999999984 445555
No 84
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.48 E-value=0.0002 Score=54.41 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=46.3
Q ss_pred ccccccccccCCcccHH-HHHHHH-HhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIESPDGSMRDF-IIKALD-KLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~d~G~I~~~-L~~~l~-~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
+++|..+--++|++++. |+..|+ .|+.-.+ ...+...+.+++ ... |.|+||.|||.||+.++..
T Consensus 11 I~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~--~~~d~~~vd~im----~~L-D~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 11 MLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLK--NQNDPMAVDKIM----KDL-DDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHc--CCCCHHHHHHHH----HHh-CCCCCCcCcHHHHHHHHHH
Confidence 35677777556999999 999886 4543211 122223677777 685 9999999999999998864
No 85
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.39 E-value=0.00013 Score=62.84 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=50.3
Q ss_pred cccccccccc-CCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 2 ASIFSQIESP-DGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 2 ~~~F~~~D~d-~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
-.+|+.+|.+ +|.|+-. |+.+|.+||.- -|-- -+.+|| .++ |.|.+|+|+|-||+=++++
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap----QTHL--~lK~mi----keV-ded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMMEKLGAP----QTHL--GLKNMI----KEV-DEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHhCCc----hhhH--HHHHHH----HHh-hcccccchhHHHHHHHHHH
Confidence 3579999999 5999999 99999999843 4443 677888 685 9999999999999988764
No 86
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.32 E-value=0.00037 Score=57.55 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=54.0
Q ss_pred ccccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFK 71 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~ 71 (224)
.-+|+.+|-|+ +.|-.+ |...+.+|... ..+.+ |++-+.+..|.+ +|.||+|.++|.||-.++.
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~---eLs~e--Ev~~i~ekvieE-AD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRD---ELSDE--EVELICEKVIEE-ADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhc---cCCHH--HHHHHHHHHHHH-hcCCCCCcccHHHHHHHHH
Confidence 45899999996 999999 99999999876 24444 778888888899 6999999999999987754
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.20 E-value=0.00044 Score=65.72 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=51.6
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHH
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFK 71 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~ 71 (224)
.+|+.+|+|+ |.|+-+ ++.+.+-++...-.+-+.+ ++.++- .. +|.|+||.||+.||++++.
T Consensus 551 tiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~--~i~~la----~~-mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 551 TIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDD--EILELA----RS-MDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHH--HHHHHH----Hh-hccCCCCcccHHHHHHHHh
Confidence 5799999997 999999 9999998887654444554 777776 35 5999999999999999985
No 88
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00088 Score=53.28 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=50.1
Q ss_pred cccccccc-CCcccHH-HHHHHHHhhh--hcCC--CCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHH
Q 027352 4 IFSQIESP-DGSMRDF-IIKALDKLTV--EQGM--PPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVE 69 (224)
Q Consensus 4 ~F~~~D~d-~G~I~~~-L~~~l~~lg~--~~g~--~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~ 69 (224)
-|+..|-| ||+|+-- |.+++...-. +.|. +|-+.+.|+++||+..|..- |.|++|.|||-||+..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~Dd-DfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDD-DFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhccc-ccCCCceeeHHHHHhh
Confidence 48899999 4999987 8888876543 3343 33333358999999999995 9999999999999853
No 89
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.08 E-value=0.00072 Score=52.40 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred cccccccccCCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHH
Q 027352 3 SIFSQIESPDGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQ 79 (224)
Q Consensus 3 ~~F~~~D~d~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~ 79 (224)
++|..+|..+|.|+-+ .+..+.+-|.. .+ .|..|- ..+|.|++|.+|++||+.+|.-+...+..
T Consensus 14 ~~F~~l~~~~g~isg~~a~~~f~~S~L~------~~--~L~~IW-----~LaD~~~dG~L~~~EF~iAm~Li~~~~~~ 78 (104)
T PF12763_consen 14 QIFQSLDPQDGKISGDQAREFFMKSGLP------RD--VLAQIW-----NLADIDNDGKLDFEEFAIAMHLINRKLNG 78 (104)
T ss_dssp HHHHCTSSSTTEEEHHHHHHHHHHTTSS------HH--HHHHHH-----HHH-SSSSSEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEeHHHHHHHHHHcCCC------HH--HHHHHH-----hhhcCCCCCcCCHHHHHHHHHHHHHHhcC
Confidence 5788888767999999 99988877654 34 777776 34699999999999999999755444443
No 90
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.04 E-value=0.004 Score=66.29 Aligned_cols=71 Identities=13% Similarity=0.329 Sum_probs=58.2
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
++..-+|+.||++++|.++..+++..|+++|-.+ |..... +.+-+.++++.-+|.+.+|.|+.++|+.+|.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~l--pmvEe~-~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDL--PMVEEG-EPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCC--cccccC-CCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 4788899999999999999999999999988433 322111 1123589999999999999999999999986
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.03 E-value=0.00062 Score=37.72 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
+..+|+.+|.|++|.|++.||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678999999999999999999999875
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.84 E-value=0.001 Score=36.84 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.4
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHH
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAVDA 140 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l~~ 140 (224)
+..+|+.+|.|++|.|+.+||+.++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999999875
No 93
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.67 E-value=0.008 Score=58.05 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=96.0
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
.+|..||+.+ |.++.+ ...+..++...+..|-.-+..-+... ...+..-.++|.||...+.++.+
T Consensus 112 ~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~--------Fg~~~~r~~ny~~f~Q~lh~~~~----- 178 (694)
T KOG0751|consen 112 VAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH--------FGDIRKRHLNYAEFTQFLHEFQL----- 178 (694)
T ss_pred HHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHH--------hhhHHHHhccHHHHHHHHHHHHH-----
Confidence 4799999995 999999 99999988777666555542122222 23345566999999988775422
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
+..+++|+.-|+.++|.||.=.++..+-+.-.++ ++| -+
T Consensus 179 -------------------------------E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~-lt~---------~v 217 (694)
T KOG0751|consen 179 -------------------------------EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL-LTP---------FV 217 (694)
T ss_pred -------------------------------HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc-CCH---------HH
Confidence 3577899999999999999999999998876666 322 14
Q ss_pred HHHHHHh-cCCCCCccCHHHHH---------HHHHHHHHHHHH
Q 027352 161 SEAFKMV-NADDGKLVKEDEFK---------KLLTEILGSIML 193 (224)
Q Consensus 161 ~e~f~~~-D~DgDG~Is~eEF~---------~lm~~~l~~~a~ 193 (224)
++.+.-+ ..+..-++|+.-|. +++++++...++
T Consensus 218 ~~nlv~vagg~~~H~vSf~yf~afnslL~~melirk~y~s~~~ 260 (694)
T KOG0751|consen 218 EENLVSVAGGNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLAG 260 (694)
T ss_pred hhhhhhhcCCCCccccchHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 4444443 45555667777664 456666666665
No 94
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.78 E-value=0.067 Score=51.29 Aligned_cols=137 Identities=12% Similarity=0.164 Sum_probs=89.0
Q ss_pred cccccccccC-CcccHH-HHH--HHHHhhhhcCCCCCCCHHHHHHhhh-----------hhhhhccccCCCcccCHHHHH
Q 027352 3 SIFSQIESPD-GSMRDF-IIK--ALDKLTVEQGMPPSSDSWVMSNIVE-----------PGIQSCAIDEHGKPVSQETFL 67 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~--~l~~lg~~~g~~p~~~~~el~~i~~-----------~~l~~~~D~dg~G~Id~~EFl 67 (224)
++|-.+++-. |+|+.. |++ .+..|-... ++ |.++..++ ..+.++ |.|+||.|+-++-.
T Consensus 229 rIFy~~nrs~tG~iti~el~~snll~~l~~l~-----eE-ed~nq~~~~FS~e~f~viy~kFweL-D~Dhd~lidk~~L~ 301 (493)
T KOG2562|consen 229 RIFYYLNRSRTGRITIQELLRSNLLDALLELD-----EE-EDINQVTRYFSYEHFYVIYCKFWEL-DTDHDGLIDKEDLK 301 (493)
T ss_pred hhheeeCCccCCceeHHHHHHhHHHHHHHHHH-----HH-hhhhhhhhheeHHHHHHHHHHHhhh-ccccccccCHHHHH
Confidence 4677788885 998876 443 444443221 11 12222222 446775 99999999988875
Q ss_pred HHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhh----cCCCCCCCccCHHHHHHHHHHhhh
Q 027352 68 VEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALE----NVPKDRNGKLSKDYLRVAVDAVAA 143 (224)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~----~~D~DgdG~Is~~ELr~~l~~lg~ 143 (224)
.. . + .......+..+|. .+=.-++|+++.+++..++-++..
T Consensus 302 ry-~-------d---------------------------~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 302 RY-G-------D---------------------------HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred HH-h-------c---------------------------cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 42 1 1 0111246778888 344556899999999988876543
Q ss_pred hcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 144 SAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 144 ~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
+-. | .-++=.|+=+|.||||.++..|..-+..+++..|
T Consensus 347 k~t-~---------~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm 384 (493)
T KOG2562|consen 347 KDT-P---------ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRM 384 (493)
T ss_pred CCC-c---------cchhhheeeeeccCCCcccHHHHHHHHHHHHHHH
Confidence 221 1 1266789999999999999999988887777655
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.12 E-value=0.0037 Score=49.00 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=34.3
Q ss_pred ccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHH
Q 027352 4 IFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLV 68 (224)
Q Consensus 4 ~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~ 68 (224)
.|..+|+|+ |.|++. |+.....| . |.+. =+..++ ..+ |.|+||.|++.||..
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l--~----~~e~--C~~~F~----~~C-D~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPL--M----PPEH--CARPFF----RSC-DVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTT--S----TTGG--GHHHHH----HHH--TT-SSSEEHHHHHH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHH--h----hhHH--HHHHHH----HHc-CCCCCCCCCHHHHcc
Confidence 489999995 999998 88776655 2 3333 355555 686 999999999999963
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.45 E-value=0.052 Score=39.38 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=48.7
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCC----CCCccCHHHHHHHHH
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNAD----DGKLVKEDEFKKLLT 185 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~D----gDG~Is~eEF~~lm~ 185 (224)
+..+|+.+=. +.+.+|.++|+.+|..-.-.... +...+.++|.++..+ ..+.+++++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~--------~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL--------TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS--------SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC--------cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5678888844 79999999999999864321111 567799999998655 479999999999885
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=93.99 E-value=0.049 Score=53.01 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=46.3
Q ss_pred cccccccccCCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHH
Q 027352 3 SIFSQIESPDGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIA 74 (224)
Q Consensus 3 ~~F~~~D~d~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~ 74 (224)
..|..+|..+|+++.. |..++.+.+.-.|... . .++++++ ... +.|.+|+|+|+||+..+....
T Consensus 23 ~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~-~--eei~~~l----~~~-~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 23 EKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFV-R--EEIKEIL----GEV-GVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHhhcCCCCeeehHHhHHHHHHhcccccchh-H--HHHHHHH----hcc-CCCcCCccCHHHHHHHHHhhh
Confidence 5688999325999999 9999998875521111 1 1445555 784 999999999999998765433
No 98
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.45 E-value=0.16 Score=46.86 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=47.2
Q ss_pred HHhhcCCCCCCCccCHHHHHHHHHH-hhhhcCCCCCCchhhHH-------HHHHHHHHHhcCCCCCccCHHHHHHH
Q 027352 116 AALENVPKDRNGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMD-------VVVSEAFKMVNADDGKLVKEDEFKKL 183 (224)
Q Consensus 116 ~aF~~~D~DgdG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d-------~~~~e~f~~~D~DgDG~Is~eEF~~l 183 (224)
..|...|.|+||++.-.||...+.. +..-+ +|...+..|. ..-+-+++.+|+|.|-.|+.+||+.-
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvY--dpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVY--DPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 3578889999999999999988864 33222 2322222222 33445688999999999999999854
No 99
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.43 E-value=0.062 Score=49.95 Aligned_cols=60 Identities=8% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
..+.=+|..+|.|-||+|+..||+.+-.--. +.=++..|...|...||.||-.|..-.+.
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn--------------E~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELDKN--------------EACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhccCc--------------hhHHHHHHhhhcccccCccccchhhhhhc
Confidence 4577799999999999999999998764322 33488999999999999999999886654
No 100
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.67 E-value=0.24 Score=33.77 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHh
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAV 141 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~l 141 (224)
..+...|+..|++++|+|..+|+.++++.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 478899999999999999999999998764
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.64 E-value=0.49 Score=40.00 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=54.6
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHHhhh------------hcCCCCCCchh--------------------------
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDAVAA------------SAGLPPIGAVA-------------------------- 154 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~------------~~g~p~~~~~e-------------------------- 154 (224)
.|.+--..||+|+||.|.+-|--..++.+|- +.++.+++.+.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4666777899999999999999888887752 11111111100
Q ss_pred -----hHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 155 -----QMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 155 -----~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
......++||.+.+..+.+.+++.|..+|++.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 01177999999999999999999999999974
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=0.2 Score=50.99 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
..+.+.|..+|+..+|+||-..=|.+|..-+ + ....+..+----|.||||+++.+||+-.|.
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~----L--------pq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSG----L--------PQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcC----C--------chhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 4588999999999999999999999987644 4 234466777778999999999999997663
No 103
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.17 E-value=0.77 Score=46.51 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=89.1
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
.+|+..|++. |+++.. ...+++.+... .... -+..++ .++ +.-+++++...+|......
T Consensus 140 ~~~~~ad~~~~~~~~~~~~~~~~~~~n~~----l~~~--~~~~~f----~e~-~~~~~~k~~~~~~~~~~~~-------- 200 (746)
T KOG0169|consen 140 SIFQEADKNKNGHMSFDEVLDLLKQLNVQ----LSES--KARRLF----KES-DNSQTGKLEEEEFVKFRKE-------- 200 (746)
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHh----hhHH--HHHHHH----HHH-HhhccceehHHHHHHHHHh--------
Confidence 4688999995 999999 99999988755 2222 344444 575 7779999999999876431
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~ 160 (224)
+.. . ..+...|..+=.+ .+++|.++|..+|......-+. +.+.+
T Consensus 201 ~~~-----------------------r----pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~--------~~~~a 244 (746)
T KOG0169|consen 201 LTK-----------------------R----PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGA--------TLDEA 244 (746)
T ss_pred hcc-----------------------C----chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccc--------cHHHH
Confidence 111 1 2455666655444 9999999999999986532222 45667
Q ss_pred HHHHHHhcCC----CCCccCHHHHHHHHH
Q 027352 161 SEAFKMVNAD----DGKLVKEDEFKKLLT 185 (224)
Q Consensus 161 ~e~f~~~D~D----gDG~Is~eEF~~lm~ 185 (224)
.++|+++-.- ..+.++.+-|.++|.
T Consensus 245 e~ii~~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 245 EEIIERYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HHHHHHhhhhhhccccceecHHHHHHHhc
Confidence 7888777332 456789999988875
No 104
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.82 E-value=0.17 Score=46.80 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
.+.=-|..+|+|+|+.|.+.|++.+=.-+-.... ...=...+|+-.|.|+|-+|+++|.+..+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~---------~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK---------PRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhcc---------HHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 4555799999999999999998765443321111 234467889999999999999999988763
No 105
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.68 E-value=0.22 Score=49.08 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=57.3
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
..+..|..+|.|+-|+++.+..+++|+..+... .++.+.+.++++|.+-.|.++..||.++|..+-
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~----------d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGW----------DEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 466889999999999999999999999877433 467799999999999999999999999997553
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.47 E-value=0.62 Score=48.09 Aligned_cols=73 Identities=15% Similarity=-0.044 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 109 ELDKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 109 ~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
-+..++++.|.-+|+...|.++.+++...|..+|...+ .+++...+|..+..+.|.++-|.+++.||...|..
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e-----~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTE-----EEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccc-----hhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 34457999999999999999999999999999885443 24678899999999999999999999999988763
No 107
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=0.29 Score=50.49 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=57.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
..+.++|..+|++.+|+|+-.+.+..|..- |+ ....+..+-...|.+++|.++++||.-.|--+...-
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~----gl--------~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~ 350 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPF----GL--------SKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKR 350 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccC----CC--------ChhhhhhhhhhcchhccCcccccccchhhhhhhhhh
Confidence 457779999999999999999999999873 34 233477777889999999999999988886666554
Q ss_pred HHh
Q 027352 192 MLQ 194 (224)
Q Consensus 192 a~~ 194 (224)
+.+
T Consensus 351 ~~g 353 (847)
T KOG0998|consen 351 AEG 353 (847)
T ss_pred hcC
Confidence 555
No 108
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=88.19 E-value=1.1 Score=45.35 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=57.9
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.-+...|+..|+|++|.++..|...++..+...+ .+..+..+|++.|.-++|++..++|.++-.+
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l----------~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL----------SESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhh----------hHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 4578899999999999999999999999988766 5677999999999999999999999987653
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=87.91 E-value=2.6 Score=42.06 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHh-------cCCCCCccCHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMV-------NADDGKLVKEDEFKKLL 184 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~-------D~DgDG~Is~eEF~~lm 184 (224)
+++..+|..+=.+ ++.+|.++|+.+|....-.... +.+.+.++|.++ ...+.+.++++.|...+
T Consensus 38 ~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 38 DDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDC--------TLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFL 108 (599)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCC--------CHHHHHHHHHHHHhhccccccccccCcCHHHHHHHH
Confidence 5788899888544 4789999999999875421111 233355555433 11233568999999888
Q ss_pred H
Q 027352 185 T 185 (224)
Q Consensus 185 ~ 185 (224)
.
T Consensus 109 ~ 109 (599)
T PLN02952 109 L 109 (599)
T ss_pred c
Confidence 5
No 110
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.76 E-value=4.4 Score=30.66 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHh-------h--hhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAV-------A--ASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKK 182 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~l-------g--~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~ 182 (224)
.+++-.|+.+ .|++|.+++.-|...|..+ | ..+|- .+..++..|... .+.-.|+.++|+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--------~e~sv~sCF~~~--~~~~~I~~~~Fl~ 71 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--------IEPSVRSCFQQV--QLSPKITENQFLD 71 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----------HHHHHHHHHHT--TT-S-B-HHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--------cHHHHHHHhccc--CCCCccCHHHHHH
Confidence 4678889988 8999999999998888763 3 24443 566789999998 3566899999999
Q ss_pred HHHH
Q 027352 183 LLTE 186 (224)
Q Consensus 183 lm~~ 186 (224)
.|+.
T Consensus 72 wl~~ 75 (90)
T PF09069_consen 72 WLMS 75 (90)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8863
No 111
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=87.59 E-value=0.83 Score=47.21 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=69.5
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
+.|..+|+.+ |.++.+ +.+++..+|... ..+ .++..-+.+.+.++ |.++-|.++|.+|..-|.+-+..
T Consensus 751 Ale~~~~~~d~~aa~~e~~~~~Lmslg~~~----e~e-e~~~~e~~~lvn~~-n~l~~~qv~~~e~~ddl~R~~e~---- 820 (890)
T KOG0035|consen 751 ALENEQDKIDGGAASPEELLRCLMSLGYNT----EEE-EQGIAEWFRLVNKK-NPLIQGQVQLLEFEDDLEREYED---- 820 (890)
T ss_pred HHHhHHHHhhcccCCHHHHHHHHHhcCccc----chh-HHHHHHHHHHHhcc-CcccccceeHHHHHhHhhhhhhh----
Confidence 5789999996 889999 999999999883 211 01111122444685 99999999999999877642111
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHH
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRV 136 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~ 136 (224)
+..+ ..+..+|+.+=+++. +|..+||+.
T Consensus 821 -----------------------l~~~----~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 -----------------------LDTE----LRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred -----------------------hcHH----HHHHHHHHHHHcchh-HHHHHHHHh
Confidence 1122 578889999988888 999999988
No 112
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=86.80 E-value=0.48 Score=44.00 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=44.5
Q ss_pred hhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCc
Q 027352 49 IQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGK 128 (224)
Q Consensus 49 l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~ 128 (224)
+..+ |.|.|+.|+..||-- ++++ +.......+-.+..|+..|.|+|-+
T Consensus 339 F~qL-dkN~nn~i~rrEwKp-FK~~------------------------------l~k~s~~rkC~rk~~~yCDlNkDKk 386 (421)
T KOG4578|consen 339 FNQL-DKNSNNDIERREWKP-FKRV------------------------------LLKKSKPRKCSRKFFKYCDLNKDKK 386 (421)
T ss_pred eeee-cccccCccchhhcch-HHHH------------------------------HHhhccHHHHhhhcchhcccCCCce
Confidence 3575 999999999999842 2222 2222233467888999999999999
Q ss_pred cCHHHHHHHHHH
Q 027352 129 LSKDYLRVAVDA 140 (224)
Q Consensus 129 Is~~ELr~~l~~ 140 (224)
||.+|++..|..
T Consensus 387 ISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 387 ISLDEWRGCLGV 398 (421)
T ss_pred ecHHHHhhhhcc
Confidence 999999887753
No 113
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.71 E-value=2.2 Score=42.38 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 158 VVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 158 ~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
.-+.++|.++|.|+||.++-+||..+...+
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 446789999999999999999999887643
No 114
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=85.69 E-value=4.4 Score=40.33 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhh-hcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAA-SAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~-~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
..+...|..||.|+||-++.+||..++...+. ++|-++ ++ +. .-.+..|.++++-|...+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~----~~------~~---t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSP----YK------DS---TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCc----cc------cc---ceecccceeehhhHHHHHH
Confidence 37889999999999999999999999998653 222111 11 11 1112679999999997764
No 115
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=84.27 E-value=1.6 Score=47.50 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=61.1
Q ss_pred HHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHhh
Q 027352 116 AALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSIMLQL 195 (224)
Q Consensus 116 ~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~a~~l 195 (224)
..|+.+|.||.|-||+.++..+|..- .++ +..+++=++.-+.+|.+...+|++|+.-+.+ =|.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~y----------tqse~dfllscae~dend~~~y~dfv~rfhe----pakdi 4125 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHY----------TQSEIDFLLSCAEADENDMFDYEDFVDRFHE----PAKDI 4125 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccc----------hhHHHHHHHHhhccCccccccHHHHHHHhcC----chhhc
Confidence 47899999999999999999999852 334 5667888888888999999999999976644 34555
Q ss_pred cCCCeEEeecceeccCC
Q 027352 196 EGNPIAISSNSVVHEPL 212 (224)
Q Consensus 196 ~~~pi~~~~~~~~~~~~ 212 (224)
|.+--++.+|---|-|-
T Consensus 4126 gfnvavlltnlsehmpn 4142 (5019)
T KOG2243|consen 4126 GFNVAVLLTNLSEHMPN 4142 (5019)
T ss_pred CcchhhhhhhhHhhCCC
Confidence 66655555554444443
No 116
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=82.99 E-value=2.6 Score=31.37 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=36.4
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
||.+|.+|...+-..+...++++ ..+..++++.+..-.+...++.+|.+.++..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLD--------AEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcC--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 78899999888777766666663 3345555555555445567888888777654
No 117
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=81.91 E-value=2.1 Score=37.39 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHH---------------HhhcCCCC-C
Q 027352 62 SQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTA---------------ALENVPKD-R 125 (224)
Q Consensus 62 d~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~---------------aF~~~D~D-g 125 (224)
...||-.-|++|+..+.-.+... +.+.+.. .++...+ -|-.+|+- .
T Consensus 140 ~ltefp~rm~dwl~~vl~~l~~r----------------~el~~~~--~~e~~~ea~~~d~~k~i~pv~wqf~qld~~p~ 201 (259)
T KOG4004|consen 140 ELTEFPLRMRDWLKNVLVTLYER----------------DELTEKH--ENEKRLEAGDHDFEKYIFPVHWQFGQLDQHPI 201 (259)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHH----------------HHHHHHH--HHHHHhhcccccccceeeeeeeeeccccCCCc
Confidence 35788888999998877766532 1111111 0111111 25566754 4
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLL 184 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm 184 (224)
||++|-.||..+-.- + +| |+.-+...|...|.|+||.|+.+|.-..+
T Consensus 202 d~~~sh~el~pl~ap----~-ip-------me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAP----L-IP-------MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCC----c-cc-------HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 999999998765322 2 33 66778899999999999999999986554
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=81.57 E-value=3.6 Score=41.20 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=46.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEF 180 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF 180 (224)
..+...|+.+|++++|.|+-.+|...|..+-. |. ..+-+.-+|+-.|.++| ..+.+|-
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--~~--------~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--GD--------ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--hh--------HHHHHHHHHhhccCCcc-ccccccc
Confidence 35788999999999999999999888887542 11 34557778888899988 8888776
No 119
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=81.32 E-value=1.7 Score=47.28 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=44.6
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHH
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFK 71 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~ 71 (224)
..|+.+|.|+ |.|++. +.++|. |+.+ -|.. +++=++ .++..|.|...+|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame--~~k~---ytqs--e~dfll-----scae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAME--GHKH---YTQS--EIDFLL-----SCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHh--cccc---chhH--HHHHHH-----HhhccCccccccHHHHHHHhc
Confidence 4699999998 999999 999999 5552 2222 555555 447899999999999998764
No 120
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=80.41 E-value=2.8 Score=39.10 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
..+...|..||.+++|.++.-|....+.-+ .| ||. +...++-.|+.++.+-||.+..++|--+++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavl---c~-p~~-----t~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVL---CG-PPV-----TPVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheee---eC-CCC-----cHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 468899999999999999766555555433 22 221 566799999999999999999987765554
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=80.01 E-value=10 Score=32.18 Aligned_cols=145 Identities=7% Similarity=0.064 Sum_probs=86.6
Q ss_pred cccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccC-CCcccCHHHHHHHHHHHHHHHHHhhhc
Q 027352 7 QIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDE-HGKPVSQETFLVEFKKIADCVAQRLKE 83 (224)
Q Consensus 7 ~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~d-g~G~Id~~EFl~~~~~~~~~~~~~~~~ 83 (224)
-||+|+ |.|... --.+.++||... --. .+..++ ++ .-+..+...|+-. .-
T Consensus 15 FFDrd~DGiI~P~dTy~GFraLGf~~----~~s--~~aa~~---------I~~~lSy~T~~~w~p~------------P~ 67 (174)
T PF05042_consen 15 FFDRDKDGIIYPWDTYQGFRALGFGI----LLS--LLAAFI---------IHGALSYPTQPSWIPD------------PF 67 (174)
T ss_pred eeCCCCCeeECHHHHHHHHHHhCCCH----HHH--HHHHHH---------HHcccCCccCCCCCCC------------Cc
Confidence 479995 999998 888899998771 111 111111 11 1122222222100 00
Q ss_pred CCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHh---hhhcCCCCCCchhhHHHHH
Q 027352 84 QPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAV---AASAGLPPIGAVAQMDVVV 160 (224)
Q Consensus 84 ~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~l---g~~~g~p~~~~~e~~d~~~ 160 (224)
=||-|..=-+...||.-..+-.+-+=.-...+++|..+++.+.+.||..|+...++.- ...+|.-. ..-||
T Consensus 68 f~Iyi~nIhk~kHGSDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a------~~~EW 141 (174)
T PF05042_consen 68 FRIYIKNIHKGKHGSDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFA------AFFEW 141 (174)
T ss_pred eeEEeecccccccCCCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhh------hhhHH
Confidence 1233333334556666555444443344579999999999999999999999999862 23344422 34567
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 161 SEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 161 ~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
..+..-+ .|.||.+..|.-..+..
T Consensus 142 ~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 142 GALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 7777555 57789999988776654
No 122
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=78.83 E-value=12 Score=30.70 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=47.8
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHHhhh-hcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAVDAVAA-SAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~-~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
+-.+|..|-+.+...++-.-+..+++..++ .-.+ +...++-+|.++-.-+...|+|++|...|.++
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~--------t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKL--------TSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS---------HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCC--------chHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 334566667777778888899999998774 1112 56678999999987777889999998888654
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.55 E-value=6.1 Score=40.67 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHhhcCC--CCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 114 MTAALENVP--KDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 114 l~~aF~~~D--~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
..+-|..|+ +-+.|+|+-+.-|.+|-.-| +|+ -.+.++-.-.|.|.||+.|..||--.|+-|.
T Consensus 15 r~K~~~qF~~Lkp~~gfitg~qArnfflqS~----LP~--------~VLaqIWALsDldkDGrmdi~EfSIAmkLi~--- 79 (1118)
T KOG1029|consen 15 RQKHDAQFGQLKPGQGFITGDQARNFFLQSG----LPT--------PVLAQIWALSDLDKDGRMDIREFSIAMKLIK--- 79 (1118)
T ss_pred HHHHHHHHhccCCCCCccchHhhhhhHHhcC----CCh--------HHHHHHHHhhhcCccccchHHHHHHHHHHHH---
Confidence 344455555 55699999999999997644 442 3477888889999999999999998887655
Q ss_pred HHhhcCCCeEEee
Q 027352 192 MLQLEGNPIAISS 204 (224)
Q Consensus 192 a~~l~~~pi~~~~ 204 (224)
++|.|.||=.+.
T Consensus 80 -lkLqG~~lP~~L 91 (1118)
T KOG1029|consen 80 -LKLQGIQLPPVL 91 (1118)
T ss_pred -HHhcCCcCCCCC
Confidence 456666665554
No 124
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.65 E-value=1.9 Score=40.44 Aligned_cols=60 Identities=7% Similarity=0.038 Sum_probs=47.9
Q ss_pred HHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhh
Q 027352 40 VMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALE 119 (224)
Q Consensus 40 el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~ 119 (224)
++-=|+ .++ |.|.+|.++..|...+..+ ++| .-++..|.
T Consensus 251 s~gWMF----nkl-D~N~Dl~Ld~sEl~~I~ld--------------------------------knE----~CikpFfn 289 (434)
T KOG3555|consen 251 SLGWMF----NKL-DTNYDLLLDQSELRAIELD--------------------------------KNE----ACIKPFFN 289 (434)
T ss_pred hhhhhh----hcc-ccccccccCHHHhhhhhcc--------------------------------Cch----hHHHHHHh
Confidence 666667 586 9999999999998654221 123 57888999
Q ss_pred cCCCCCCCccCHHHHHHHHHH
Q 027352 120 NVPKDRNGKLSKDYLRVAVDA 140 (224)
Q Consensus 120 ~~D~DgdG~Is~~ELr~~l~~ 140 (224)
..|..+||+||..|.-.-|..
T Consensus 290 sCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 290 SCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhcccccCccccchhhhhhcc
Confidence 999999999999999888865
No 125
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=76.12 E-value=2.1 Score=43.15 Aligned_cols=96 Identities=22% Similarity=0.072 Sum_probs=68.5
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCC---------------------
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDG--------------------- 172 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgD--------------------- 172 (224)
...+|..+|.+-|++++-.++.......|... ..--.+-+.+-.++.++|+-+|.+||
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vv-aa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGNVV-AANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHHHH-HhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 45788999999999999888866665554211 00001123345669999999999999
Q ss_pred --CccCHHHHHHHHHHHHHHHHHhhcCCCeEEeecceecc
Q 027352 173 --KLVKEDEFKKLLTEILGSIMLQLEGNPIAISSNSVVHE 210 (224)
Q Consensus 173 --G~Is~eEF~~lm~~~l~~~a~~l~~~pi~~~~~~~~~~ 210 (224)
|.+..+|.+.++....--++++|+.-...=+.-.+.|+
T Consensus 518 s~~~vtVDe~v~ll~~~i~~V~~~~er~tq~~q~p~~n~~ 557 (975)
T KOG2419|consen 518 SFGVVTVDELVALLALDIIQVMLYLERLTQQEQEPIINHF 557 (975)
T ss_pred ccCeeEHHHHHHHHHHHHHHHHHHHHHhhhccccchhhcc
Confidence 99999999999998888888888765444333334443
No 126
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=75.97 E-value=1.9 Score=31.05 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVD 139 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~ 139 (224)
+++.++|+.+ .++-++||.+|||..|.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 5899999999 77889999999999974
No 127
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.75 E-value=5.8 Score=38.98 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
.++..-|+.+-.|-+|+|+-.--+.+|..-. +| -.++.-|.+-.|.|.||.++..||+..|.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk----lp--------i~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK----LP--------IEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc----Cc--------hHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 5677889999999999999998899987633 22 24477788888999999999999998774
No 128
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.26 E-value=5.4 Score=40.05 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-H
Q 027352 111 DKTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL-G 189 (224)
Q Consensus 111 ~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l-~ 189 (224)
+..++-.|.+.|. ++|.++.+|++.++...-- .+. .....+.+......++.+.|.++.|.+.++.+.-++..+. .
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~~ 93 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSIS-ANW-LSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPTL 93 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHH-hhh-hhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhchHH
Confidence 3688899999999 8999999999999876321 111 2223445677889999999999999999999988887544 4
Q ss_pred HHHHhhc
Q 027352 190 SIMLQLE 196 (224)
Q Consensus 190 ~~a~~l~ 196 (224)
..|-++.
T Consensus 94 ~~~~~~~ 100 (646)
T KOG0039|consen 94 LFAILLS 100 (646)
T ss_pred HHHHHHH
Confidence 4444443
No 129
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.82 E-value=3.1 Score=40.82 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=41.8
Q ss_pred cccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHh
Q 027352 94 TFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAV 141 (224)
Q Consensus 94 ~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~l 141 (224)
.+.|+.-+.|..+-+.--.++..+|+..|.|+||-|+.+|+..+|..+
T Consensus 247 fisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 247 FISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 457888888888876666789999999999999999999999998753
No 130
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=66.63 E-value=8.8 Score=31.26 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=29.0
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhc-------CCCCCccCHHHHHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVN-------ADDGKLVKEDEFKKLLTEILG 189 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D-------~DgDG~Is~eEF~~lm~~~l~ 189 (224)
=+.||+.|+.+.=+=.. + ....+..+++++. .+..+.|+|+-|...|+.+|+
T Consensus 5 ~~~lsp~eF~qLq~y~e--y----------s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE--Y----------STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp -S-S-HHHHHHHHHHHH--H--------------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eeccCHHHHHHHHHHHH--H----------HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 36788888866543211 1 1233666666663 334568999999999996654
No 131
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=65.41 E-value=4.5 Score=40.25 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=47.8
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
..|..+|+|+ |.++.. +..+|+..++. .+.+ .+.+++ ++ +|.+-+|.+...||+.+|..
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~~~----~d~~--~~~~~l----~e-a~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSENVG----WDED--RLHEEL----QE-ADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCC----CCHH--HHHHHH----HH-HHHhhcceeeHHHHHHHHHH
Confidence 3588999987 999999 99999988855 4444 666666 68 49988999999999988764
No 132
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=63.77 E-value=12 Score=34.85 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=44.5
Q ss_pred ccccccccccC-CcccHH-HHHHHH-HhhhhcCCCCCCCHHHHHHhhh-------hhhhhccccCCCcccCHHHHHHH
Q 027352 2 ASIFSQIESPD-GSMRDF-IIKALD-KLTVEQGMPPSSDSWVMSNIVE-------PGIQSCAIDEHGKPVSQETFLVE 69 (224)
Q Consensus 2 ~~~F~~~D~d~-G~I~~~-L~~~l~-~lg~~~g~~p~~~~~el~~i~~-------~~l~~~~D~dg~G~Id~~EFl~~ 69 (224)
+..|.++|.|+ |.++.. |..... .|-.. ..|..+...+.+|-+ -.+..+ |+|.+--|+.+||+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKv--YdpkNeeDDM~EmeEErlRMREHVMk~v-DtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKV--YDPKNEEDDMKEMEEERLRMREHVMKQV-DTNQDRLVTLEEFLND 321 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHHHHHHHHHHhc-ccchhhhhhHHHHHhh
Confidence 34689999996 999998 877554 23211 235544334544422 456785 9999999999999865
No 133
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=62.36 E-value=28 Score=28.89 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHH-----HHHHHHHHhhcCCCeEE
Q 027352 161 SEAFKMVNADDGKLVKEDEFKKLLT-----EILGSIMLQLEGNPIAI 202 (224)
Q Consensus 161 ~e~f~~~D~DgDG~Is~eEF~~lm~-----~~l~~~a~~l~~~pi~~ 202 (224)
.-+-+++..|..-+++..|++.++. .++.+|+.+||.-|+.+
T Consensus 35 ~~LrNKLNP~q~H~Lt~~el~~i~~~Tgd~~il~~ll~~lg~v~v~l 81 (162)
T PF06892_consen 35 QTLRNKLNPEQPHKLTVDELIAITDATGDYRILDALLAELGCVPVVL 81 (162)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHhCCcHHHHHHHHHCCCeeecC
Confidence 4577889999888999999999998 89999999999999864
No 134
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.20 E-value=33 Score=28.29 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 116 AALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 116 ~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
-.|.+++-| |.++..|.+.+..-+...+|++ ...+++++.....-+.-.+|+--|...|+
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~--------~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGID--------GEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 678888775 6789999888888788889984 34466666666555566777777777666
No 135
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=56.74 E-value=33 Score=26.52 Aligned_cols=64 Identities=14% Similarity=0.284 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
..++..|..+=+ ||+|+++.+-+... +. .+.|...+..+.+-++=... ...|+.+|+..+..+|
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG-------M~--dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG-------MK--DSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-----------S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC-------Cc--ccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 478889999888 89999998776653 22 23444444455554444444 5789999987665543
No 136
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=55.35 E-value=13 Score=20.63 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=13.7
Q ss_pred cCCCCCccCHHHHHHHHH
Q 027352 168 NADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 168 D~DgDG~Is~eEF~~lm~ 185 (224)
|.|+||.|+--.|.-+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 679999999888875543
No 137
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.95 E-value=14 Score=38.39 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=97.2
Q ss_pred cccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHHHHh
Q 027352 3 SIFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 3 ~~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
..|+.+|..+ |.|+.. -+..+..-|+- .. .+-.+. ...|..+.|..+..+|...++.+.......
T Consensus 15 ~~~~~~d~~~~G~i~g~~a~~f~~~s~L~------~q--vl~qiw-----s~~d~~~~g~l~~q~f~~~lrlva~aq~~~ 81 (847)
T KOG0998|consen 15 QYFKSADPQGDGRITGAEAVAFLSKSGLP------DQ--VLGQIW-----SLADSSGKGFLNRQGFYAALRLVAQAQSGR 81 (847)
T ss_pred HhhhccCcccCCcccHHHhhhhhhccccc------hh--hhhccc-----cccccccCCccccccccccchHhhhhhccc
Confidence 3688889996 999998 66666644433 21 333333 446999999999999999886544222221
Q ss_pred hhcCCe-----------eeec--ccc------cccccchhhhccchHHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHh
Q 027352 81 LKEQPV-----------IVAH--SEN------TFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKLSKDYLRVAVDAV 141 (224)
Q Consensus 81 ~~~~~~-----------~v~~--~~~------~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr~~l~~l 141 (224)
....+. .+.| +.- +.+|..+-.+...+ ...+...|.-+... +|..+-+-.+.+|..-
T Consensus 82 ~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe---~aky~q~f~s~~p~-~g~~sg~~~~pil~~s 157 (847)
T KOG0998|consen 82 ELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQE---QAKYDQIFRSLSPS-NGLLSGDKAKPILLNS 157 (847)
T ss_pred CcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHH---HHHHHHHHhccCCC-CCccccchhhhhhhcC
Confidence 111110 0011 110 11111111122222 13566779999888 9999999999998763
Q ss_pred hhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 142 AASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 142 g~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
+.+. .....+=.-.|.|.+|.+++.||.-.|.-+...|
T Consensus 158 ~Lp~------------~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 158 KLPS------------DVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred CCCh------------hhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 3211 1233444567999999999999999887665544
No 138
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=53.88 E-value=20 Score=25.53 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=41.2
Q ss_pred cccccccccCCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHH
Q 027352 3 SIFSQIESPDGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFK 71 (224)
Q Consensus 3 ~~F~~~D~d~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~ 71 (224)
.+|..+=.+++.|+.+ |.+.|+.--.. +.-.. .++..+|.+-.... .....+.++++.|...+.
T Consensus 4 ~if~~ys~~~~~mt~~~f~~FL~~eQ~~---~~~~~-~~~~~li~~~~~~~-~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 4 EIFRKYSSDKEYMTAEEFRRFLREEQGE---PRLTD-EQAKELIEKFEPDE-RNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHCTTSSSEEHHHHHHHHHHTSS----TTSSH-HHHHHHHHHHHHHH-HHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHhCCCCcCCHHHHHHHHHHHhcc---ccCcH-HHHHHHHHHHccch-hhcccCCcCHHHHHHHHC
Confidence 4677884435999999 99998744333 22222 37888885322221 222579999999998763
No 139
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=52.65 E-value=83 Score=32.89 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=34.4
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGS 190 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~ 190 (224)
++.||-+.+-....++|. |+ +...+|.++-.. .||.+.|.++|.+.-+.
T Consensus 380 ~~~i~g~~af~LydTyGf----P~--------dlt~~~a~e~g~----~vd~~~F~~~~~~~~~~ 428 (851)
T TIGR00344 380 KKELDGEDAFKLYDTYGF----PV--------ELTKEIAEERGL----TVDIPGFETLMAEQRER 428 (851)
T ss_pred CCccCHHHHHHHHHccCC----CH--------HHHHHHHHHcCC----ccCHHHHHHHHHHHHHH
Confidence 467999999888888664 32 235556666544 49999999999765543
No 140
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=52.38 E-value=21 Score=29.20 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=34.4
Q ss_pred CCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcccCHHHHHHHHHH
Q 027352 12 DGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKPVSQETFLVEFKK 72 (224)
Q Consensus 12 ~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~Id~~EFl~~~~~ 72 (224)
...++-. +.++++..|+.-+- -+.. .+.-++ .++ -..+...|+|++|+.++..
T Consensus 16 ~~~m~~~~F~Kl~kD~~i~d~k-~t~t--dvDiiF----~Kv-k~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 16 GTEMDSKNFAKLCKDCGIIDKK-LTST--DVDIIF----SKV-KAKGARKITFEQFLEALAE 69 (154)
T ss_dssp SSEEEHHHHHHHHHHTSS--SS-S-HH--HHHHHH----HHH-T-SS-SEEEHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCCCCC-CchH--HHHHHH----HHh-hcCCCcccCHHHHHHHHHH
Confidence 4778888 99999999876333 2332 444444 564 5556677999999988754
No 141
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=52.11 E-value=80 Score=25.06 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred CcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhcc--chHHHHHHHHHHhhcCCCCCCCccCHHHHH
Q 027352 58 GKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLS--NKFELDKTMTAALENVPKDRNGKLSKDYLR 135 (224)
Q Consensus 58 ~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~--~e~~~~~~l~~aF~~~D~DgdG~Is~~ELr 135 (224)
+..++..|....+..++.....+...-+ . ... =+.+..-.+.=.+.++|++++|+|+.-.++
T Consensus 57 d~~l~v~~l~~~L~~iy~~l~~~~p~~~---~-------------i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 57 DSSLSVSQLETLLSSIYEFLNKRLPTLH---Q-------------IPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp TSEEEHHHHHHHHHHHHHHHHHHSTTS------------------HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCC---C-------------CCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 4569999999999988877776654321 0 000 013444567778899999999999999999
Q ss_pred HHHHHh
Q 027352 136 VAVDAV 141 (224)
Q Consensus 136 ~~l~~l 141 (224)
.+|..+
T Consensus 121 vaL~~L 126 (127)
T PF09068_consen 121 VALITL 126 (127)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888653
No 142
>PRK03968 DNA primase large subunit; Validated
Probab=43.70 E-value=24 Score=33.46 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred HHHHHHHHHhh-cCCCCCC--CccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHH----hcCCCCCccCHHHHH
Q 027352 109 ELDKTMTAALE-NVPKDRN--GKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKM----VNADDGKLVKEDEFK 181 (224)
Q Consensus 109 ~~~~~l~~aF~-~~D~Dgd--G~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~----~D~DgDG~Is~eEF~ 181 (224)
.+-+.+.++|. .++++=+ =.| ++|+..++..+...+ .+..++.|++ .-..+-|.+..+-|=
T Consensus 182 e~iki~~eaf~knleR~vn~lYeI-rdEl~~~i~~l~ekI-----------~E~~~E~fkk~~~~~~s~~~g~l~~e~fP 249 (399)
T PRK03968 182 EFLKLWSKAFEKNLERAVNRLYEI-RDELPEFYLELAEEI-----------RETAEEEFSERGGAYGSAGAGKLRPEAFP 249 (399)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH-hhhhHHHHHHHHHHH-----------HHHHHHHHHhhccccccCCCCCCChhhCC
Confidence 34445556664 2232222 111 267777777765433 3445577777 677789999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEeecceeccCCCCC
Q 027352 182 KLLTEILGSIMLQLEGNPIAISSNSVVHEPLASP 215 (224)
Q Consensus 182 ~lm~~~l~~~a~~l~~~pi~~~~~~~~~~~~~~~ 215 (224)
=+|+.++.++-.|.-.-+|.+...+.+|=+---|
T Consensus 250 PCik~~l~gv~sG~rn~ai~lll~sFl~yar~~p 283 (399)
T PRK03968 250 PCIRNTLEGVPSGGRNYAITVLLTSFLSYARLCP 283 (399)
T ss_pred hhHHHHHhccccccccchHHHHHHHHHHHHhcCC
Confidence 9999999999999887777777777777444333
No 143
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=42.51 E-value=92 Score=32.81 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=33.3
Q ss_pred CccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHH-HHHHHHHHHHHH
Q 027352 127 GKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKED-EFKKLLTEILGS 190 (224)
Q Consensus 127 G~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~e-EF~~lm~~~l~~ 190 (224)
..|+-+++-....++| +|| +...++.++... .|+.+ .|.++|.+.-+.
T Consensus 432 ~~i~g~~~f~LyDTyG----fP~--------dl~~eia~e~g~----~vd~~~~F~~~~~~~~~~ 480 (902)
T TIGR03683 432 KEIPLDDLIELYDSHG----IPP--------EIVKEIAAELGA----EVEIPDNFYSIVAERHEK 480 (902)
T ss_pred CcCCHHHHHHHHHccC----CCH--------HHHHHHHHHcCC----cccCCccHHHHHHHHHHH
Confidence 4799999999998866 443 224555555444 48887 888888766654
No 144
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=42.49 E-value=30 Score=24.54 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=35.2
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHh
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMV 167 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~ 167 (224)
..+..+...++..-+--+-..+|+.++..+|.=.|.- ..++.++++|+.|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~------~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEV------VTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--------HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCC------ChHHHHHHHHHhh
Confidence 4577777777766666677889999999998766642 2677899999765
No 145
>PLN02222 phosphoinositide phospholipase C 2
Probab=41.42 E-value=77 Score=31.74 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcC-CCCCccCHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNA-DDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~-DgDG~Is~eEF~~lm~~ 186 (224)
.++..+|..+-. ++.+|.++|+.+|......... +.+.+.++|.++.. -..+.++++.|..+|..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~--------~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKA--------TREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccC--------CHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 478888888753 4799999999999875421111 34457777777522 24567999999998854
No 146
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.19 E-value=12 Score=35.48 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=68.9
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhh--cCCeeeeccccc------ccccchhhhccchHHHHHHHHHHhhcCCCCCC
Q 027352 55 DEHGKPVSQETFLVEFKKIADCVAQRLK--EQPVIVAHSENT------FDGSGIKRLLSNKFELDKTMTAALENVPKDRN 126 (224)
Q Consensus 55 ~dg~G~Id~~EFl~~~~~~~~~~~~~~~--~~~~~v~~~~~~------~dGs~~~~~~~~e~~~~~~l~~aF~~~D~Dgd 126 (224)
+-.+|.|.|=.-+..++ +..+..-++ ..|+-|.-+..- .||+-+.-+-. .++++.+|+..|..++
T Consensus 251 I~e~~dvgfltlle~l~--~ckvgs~lk~pr~Piwv~gSeth~tvlfs~d~~l~~~~~~-----s~q~rR~f~a~d~~d~ 323 (449)
T KOG2871|consen 251 IPEQGDVGFLTLLELLR--YCKVGSALKQPRQPIWVLGSETHLTVLFSCDGHLVVPENP-----SEQLRRNFHAYDPEDN 323 (449)
T ss_pred cccccchhHHHHHHHHH--HHHHHHhhcCCCCceeEecCCCceEEEEecCccccCCCCC-----CHHHHhhhhccCccCC
Confidence 33455666333333332 133333333 456666544421 14444433333 3589999999999999
Q ss_pred CccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHH
Q 027352 127 GKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKL 183 (224)
Q Consensus 127 G~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~l 183 (224)
|+||.+=++.+|..++.... ..+.+..+=+.+|..+=|.|=.+.|..-
T Consensus 324 nfis~s~~~~vm~~~N~~vs---------e~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 324 NFISCSGLQIVMTALNRLVS---------EPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CeeecHHHHHHHHHhccccc---------CHHHHHHhcCccChhhcceEEecccccc
Confidence 99999999999998773232 1234556666778888777776666543
No 147
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.26 E-value=37 Score=32.67 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFK 181 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~ 181 (224)
..+.++|-.+-.= ||+||-..-+..|-.-. + ...++..+-+-+|.|.||.++-+||.
T Consensus 444 ~~yde~fy~l~p~-~gk~sg~~ak~~mv~sk----l--------pnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 444 PTYDEIFYTLSPV-NGKLSGRNAKKEMVKSK----L--------PNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred cchHhhhhccccc-CceeccchhHHHHHhcc----C--------chhHHHhhhhhhcCCcccCcCHHHHH
Confidence 3567788877554 78888877777664322 2 23457888999999999999999995
No 148
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=40.12 E-value=1.7e+02 Score=30.66 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=32.1
Q ss_pred CccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 027352 127 GKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILG 189 (224)
Q Consensus 127 G~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~ 189 (224)
..||-+.+-....++| +|+ +...+|.++-.. .||.++|.++|.+.-+
T Consensus 375 ~~l~g~~~f~LydtyG----fP~--------dlt~~~a~e~g~----~vd~~~f~~~~~~~~~ 421 (865)
T PRK00252 375 KVLSGEDAFKLYDTYG----FPL--------DLTAEIARERGL----TVDEEGFEAAMEEQRE 421 (865)
T ss_pred CccCHHHHHHHHhccC----CCH--------HHHHHHHHHcCC----CcCHHHHHHHHHHHHH
Confidence 3699998888888866 442 224455555443 5889999999876554
No 149
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=40.00 E-value=12 Score=29.04 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=13.1
Q ss_pred CCccCHHHHHHHHHHhhhhcCC
Q 027352 126 NGKLSKDYLRVAVDAVAASAGL 147 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~ 147 (224)
||.++.+|...+...+...+++
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~ 58 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGL 58 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCG
T ss_pred CCCCCHHHHHHHHHHHHHhhCC
Confidence 6778888877776666444444
No 150
>PLN02900 alanyl-tRNA synthetase
Probab=38.83 E-value=2.5e+02 Score=29.88 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=34.4
Q ss_pred CCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 027352 124 DRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILG 189 (224)
Q Consensus 124 DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~ 189 (224)
.+.+.|+-+++-....++|.++ +...+|.++-.. .||.++|.++|.+.-+
T Consensus 406 ~~~~~l~g~~af~LydTyGfP~------------dlt~~ia~e~g~----~vD~~~F~~~~~~~~~ 455 (936)
T PLN02900 406 NGGPVLSGKDAFLLYDTYGFPV------------DLTELMAEERGV----TVDMEGFEAAMEEARE 455 (936)
T ss_pred cCCCcCCHHHHHHHHhccCCCH------------HHHHHHHHHcCC----eecHHHHHHHHHHHHH
Confidence 3446899999999998877433 224455554443 5889999999976553
No 151
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=38.51 E-value=98 Score=27.59 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
||.+|.+|++ ..+.+-..+++++ +....+.++|++.-.. ..++++|...++.
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~-----~~r~~a~~lf~~~k~~---~~~l~~~~~~~~~ 120 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHG-----EARRAAQQAFREGKEP---DFPLREKLRQFRS 120 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCH-----HHHHHHHHHHHHhccc---CCCHHHHHHHHHH
Confidence 8899999998 5565555566632 1233467777777443 2778888776653
No 152
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=37.91 E-value=43 Score=20.25 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 157 DVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 157 d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
|.+|-++++++-.=| |+.+||.+++.
T Consensus 2 D~EW~~Li~eA~~~G---ls~eeir~FL~ 27 (30)
T PF08671_consen 2 DEEWVELIKEAKESG---LSKEEIREFLE 27 (30)
T ss_dssp -HHHHHHHHHHHHTT-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 566888998886554 88888887764
No 153
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=37.87 E-value=38 Score=29.01 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHhcCCCCCccCHHHHHHHHHHHHHHHHHh
Q 027352 163 AFKMVNADDGKLVKEDEFKKLLTEILGSIMLQ 194 (224)
Q Consensus 163 ~f~~~D~DgDG~Is~eEF~~lm~~~l~~~a~~ 194 (224)
++..+|.|+||.++-+|...+-..++..++..
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~~~~l~~~ 86 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEIFDNLKEY 86 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHHHhhhhhc
Confidence 56688999999999999999999999998765
No 154
>PLN02228 Phosphoinositide phospholipase C
Probab=35.86 E-value=1.2e+02 Score=30.24 Aligned_cols=65 Identities=25% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCC----CCCccCHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNAD----DGKLVKEDEFKKLLTE 186 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~D----gDG~Is~eEF~~lm~~ 186 (224)
+++..+|..+=. ++.++.++|+.+|....-.... ..+.+.++|.++... ..|.++.+.|..+|..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHA--------GLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccC--------CHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 578888888753 3689999999999875421111 234578888887543 3478999999998854
No 155
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=35.69 E-value=77 Score=29.10 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLL 184 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm 184 (224)
+|.||++|=...++.+.... ....++.+++.++ |+.+||.++|
T Consensus 300 ~G~itReeal~~v~~~d~~~----------~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEF----------PKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccc----------cHHHHHHHHHHhC------CCHHHHHHHh
Confidence 67777777666666532212 2345777777775 6677777665
No 156
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=34.55 E-value=91 Score=18.96 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=15.4
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCCCchhh
Q 027352 128 KLSKDYLRVAVDAVAASAGLPPIGAVAQ 155 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~g~p~~~~~e~ 155 (224)
.++..||+..++..| +|..++..+
T Consensus 3 ~l~v~eLk~~l~~~g----L~~~G~K~~ 26 (35)
T PF02037_consen 3 KLTVAELKEELKERG----LSTSGKKAE 26 (35)
T ss_dssp TSHHHHHHHHHHHTT----S-STSSHHH
T ss_pred cCcHHHHHHHHHHCC----CCCCCCHHH
Confidence 456788999998865 455555333
No 157
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=34.30 E-value=3.1e+02 Score=28.93 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=32.7
Q ss_pred CccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCH-HHHHHHHHHHHHH
Q 027352 127 GKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKE-DEFKKLLTEILGS 190 (224)
Q Consensus 127 G~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~-eEF~~lm~~~l~~ 190 (224)
+.|+-+++-....+.| +|| +...++-++-. =.|+. +.|-++|.+--+.
T Consensus 428 ~~l~g~~~f~LYDt~G----~P~--------dl~~eia~e~g----~~vd~p~~F~~~~~~~~~~ 476 (900)
T PRK13902 428 EEIPLDDLIELYDSHG----IPP--------EIVKEIAKKKG----VEVEVPDNFYSLVAERHEK 476 (900)
T ss_pred CCCCHHHHhhhhhcCC----CCH--------HHHHHHHHHcC----CccCchhhHHHHHHHHHHH
Confidence 5799999999988866 443 22344444433 35888 8899998776554
No 158
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=33.33 E-value=52 Score=19.92 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.7
Q ss_pred CCcccCHHHHHHHHHHHH
Q 027352 57 HGKPVSQETFLVEFKKIA 74 (224)
Q Consensus 57 g~G~Id~~EFl~~~~~~~ 74 (224)
++|.|+++|++.+..++.
T Consensus 1 ~~~~i~~~~~~d~a~rv~ 18 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRVN 18 (33)
T ss_pred CCceecHHHHHHHHHHHH
Confidence 468999999999887654
No 159
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=33.03 E-value=72 Score=31.54 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=30.2
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
.+.||-+++-....++|.+. +...++.++... .||.+.|.+.|.+-
T Consensus 379 ~~~lsge~aF~LYDTyGfP~------------Dlt~eia~e~gl----~vD~~~f~~~m~~q 424 (552)
T PF01411_consen 379 KKELSGEDAFKLYDTYGFPL------------DLTEEIAEEKGL----SVDEEGFEYAMEEQ 424 (552)
T ss_dssp CSEE-HHHHHHHHHHH---H------------HHHHHHHHTTT-----EE-HHCCHHHHHHH
T ss_pred ccCCChHHheeehhccCCCH------------HHHHHHHHHhce----eecHHHHHHHHHHH
Confidence 88999999999999877433 335566665544 49999999988653
No 160
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=32.99 E-value=1.6e+02 Score=23.17 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Q 027352 114 MTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSI 191 (224)
Q Consensus 114 l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~ 191 (224)
+-.+|-+++.=|+-..+...++.+|.++|... .++.++.+|.++. |+ |.+|.+..=++-|-++
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~----------d~e~i~~visel~----GK-~i~ElIA~G~eklAsv 65 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEI----------DDERINLVLSELK----GK-DIEELIAAGREKLASV 65 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc----------CHHHHHHHHHHhc----CC-CHHHHHHHhHHHHhcC
Confidence 34567777888888999999999999999755 4667899999983 44 7888776665555444
No 161
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=31.88 E-value=1.1e+02 Score=22.96 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHhhcCCC
Q 027352 158 VVVSEAFKMVNADDGKLVKEDEFKKLLTEILGSIMLQLEGNP 199 (224)
Q Consensus 158 ~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~a~~l~~~p 199 (224)
+.++-+|+.+ .|.+|.++..-|-.++++++. +-.++|..|
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lq-ip~~vgE~~ 42 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQ-IPRAVGEGP 42 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHH-HHHHTT-GG
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHH-HHHHhCccc
Confidence 3478899999 788999999999999987654 444444433
No 162
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=31.61 E-value=1.6e+02 Score=20.92 Aligned_cols=18 Identities=6% Similarity=0.255 Sum_probs=11.4
Q ss_pred CCccCHHHHHHHHHHhhh
Q 027352 126 NGKLSKDYLRVAVDAVAA 143 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~ 143 (224)
||.|+.+|++.+...+..
T Consensus 13 DG~i~~~E~~~i~~~~~~ 30 (104)
T cd07177 13 DGRVDEEEIAAIEALLRR 30 (104)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 677777777666655543
No 163
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=31.59 E-value=2.7e+02 Score=22.53 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=11.9
Q ss_pred CCCCCccCHHHHHHH
Q 027352 169 ADDGKLVKEDEFKKL 183 (224)
Q Consensus 169 ~DgDG~Is~eEF~~l 183 (224)
.+..|..|...|.++
T Consensus 130 ~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 130 NPQTGQFDRAKLKQF 144 (145)
T ss_pred CcccCCcCHHHHHhh
Confidence 457899999888765
No 164
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=30.96 E-value=2e+02 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhh
Q 027352 19 IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQS 51 (224)
Q Consensus 19 L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~ 51 (224)
+...+++||+.. -.+. |+.++++.....
T Consensus 52 lID~lqRLGi~y---hFe~--EI~~~L~~i~~~ 79 (183)
T PF01397_consen 52 LIDTLQRLGISY---HFED--EIKEILDSIYRS 79 (183)
T ss_dssp HHHHHHHTTCGG---GGHH--HHHHHHHHHHHT
T ss_pred HHHHHHHcCCcH---HHHH--HHHHHHHHHhhh
Confidence 888999999996 6666 888888644444
No 165
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=29.75 E-value=1.2e+02 Score=23.40 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCeE
Q 027352 160 VSEAFKMVNADDGKLVKEDEFKKLLTEILGSIMLQLEGNPIA 201 (224)
Q Consensus 160 ~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~a~~l~~~pi~ 201 (224)
-+.+.+.+-.-|=|..+.+|-.+.+.+.+.++...||.+|=.
T Consensus 38 r~~~~~~l~~~G~gr~~~ee~~~~~~~~l~aLs~~Lg~~~~l 79 (126)
T cd03211 38 QREARRKLKAIGWDDKTLDQVIEEVDQCCQALSQRLGTQPYF 79 (126)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 345556666667789999999999999999999999999933
No 166
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=29.64 E-value=47 Score=28.47 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.7
Q ss_pred HhhcCCCCCCCccCHHHHHHHHHHh
Q 027352 117 ALENVPKDRNGKLSKDYLRVAVDAV 141 (224)
Q Consensus 117 aF~~~D~DgdG~Is~~ELr~~l~~l 141 (224)
+..-+|+|+||.++.+|++.+.+.+
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3447899999999999998887753
No 167
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=29.46 E-value=1.4e+02 Score=23.60 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 129 LSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 129 Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
||.--+|.-|..+-..+|.++.... +......++++++. +|.|+.+|=+++++
T Consensus 61 iSYPTvR~rLd~ii~~lg~~~~~~~-~~~~~~~~IL~~L~---~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 61 ISYPTVRNRLDKIIEKLGYEEDEEE-EEEDERKEILDKLE---KGEISVEEALEILK 113 (113)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCccc-ccchhHHHHHHHHH---cCCCCHHHHHHHhC
Confidence 5666666666666556666332222 23455778888887 68999999887763
No 168
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=29.27 E-value=3.1e+02 Score=27.63 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
++.||-+++-....++| +|+ +...++-++-.. .||.+.|.+.|.
T Consensus 385 ~~~~~g~~af~LydTyG----fP~--------dlt~~~a~e~g~----~vd~~~f~~~~~ 428 (594)
T PRK01584 385 SKIIPGDIAFKLYDTYG----FPY--------EITEELASEYGF----TVDREGFDEHFK 428 (594)
T ss_pred CCccCHHHHHhhhccCC----CCH--------HHHHHHHHHcCC----eecHHHHHHHHH
Confidence 46899998888888766 432 123344444333 588888888874
No 169
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.12 E-value=64 Score=19.25 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=14.4
Q ss_pred CCccCHHHHHHHHHHHH
Q 027352 172 GKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 172 DG~Is~eEF~~lm~~~l 188 (224)
.|.||-+||.+.-.+++
T Consensus 14 ~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 14 KGEISEEEYEQKKARLL 30 (31)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 58999999999887765
No 170
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=28.95 E-value=2.5e+02 Score=21.04 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=32.0
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 128 KLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
.||.+||.+.-+.+|.+. +...++.++.-+-.+.=--.+-+|=..+++++
T Consensus 14 ~iT~~eLlkyskqy~i~i----------t~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISI----------TKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred cCCHHHHHHHHHHhCCCC----------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 468888888877777555 44556666666655555556666666665543
No 171
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=28.59 E-value=65 Score=20.11 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=11.5
Q ss_pred ccCHHHHHHHHHHhhhhc
Q 027352 128 KLSKDYLRVAVDAVAASA 145 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~ 145 (224)
.++..+||.+|...|+.+
T Consensus 3 sltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEF 20 (35)
T ss_dssp T--SHHHHHHHHHHT---
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467789999999999766
No 172
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=28.32 E-value=2.3e+02 Score=20.51 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEI 187 (224)
Q Consensus 126 dG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~ 187 (224)
||.++.+|...+-..+.. +..+ +.....+.++|++.=.+. .++.+|.+.+...
T Consensus 13 DG~v~~~E~~~i~~~l~~-~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 65 (106)
T cd07316 13 DGRVSEAEIQAARALMDQ-MGLD-----AEARREAIRLFNEGKESD---FGLEEYARQFRRA 65 (106)
T ss_pred cCCcCHHHHHHHHHHHHH-cCCC-----HHHHHHHHHHHHHhCcCC---CCHHHHHHHHHHH
Confidence 677777776555544433 2111 112233444454432221 5566666655544
No 173
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=27.98 E-value=1.3e+02 Score=19.75 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=17.0
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCC
Q 027352 128 KLSKDYLRVAVDAVAASAGLPPI 150 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~g~p~~ 150 (224)
.+|-+||+.-|..+|.+.| |..
T Consensus 5 ~LSd~eL~~~L~~~G~~~g-PIt 26 (44)
T smart00540 5 RLSDAELRAELKQYGLPPG-PIT 26 (44)
T ss_pred HcCHHHHHHHHHHcCCCCC-CcC
Confidence 4788999999999886553 543
No 174
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=27.44 E-value=89 Score=23.69 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=35.2
Q ss_pred HhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 117 ALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 117 aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
.|...|-..+ -+|.+||+.++..+|..- .-..-...+++++.+..-.++.+|.+++|.+
T Consensus 25 ~~~~~di~~~-p~s~~eL~~~l~~~g~~~----------li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~ 83 (105)
T cd03035 25 AYTFHDYRKD-GLDAATLERWLAKVGWET----------LLNKRGTTWRKLDDAQKAALDAAKAIALMLE 83 (105)
T ss_pred CeEEEecccC-CCCHHHHHHHHHHhChHH----------HHccCchHHHhCChhhhccCCHHHHHHHHHh
Confidence 3555555543 478999999999877211 1122334566665542245787887777754
No 175
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=27.33 E-value=36 Score=25.02 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=6.7
Q ss_pred CCccCHHHHHHHHHHh
Q 027352 126 NGKLSKDYLRVAVDAV 141 (224)
Q Consensus 126 dG~Is~~ELr~~l~~l 141 (224)
||.++.+|...+...+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 3444444444444433
No 176
>PLN02952 phosphoinositide phospholipase C
Probab=27.02 E-value=1.7e+02 Score=29.41 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=38.1
Q ss_pred CCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 027352 125 RNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 125 gdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~ 186 (224)
+.|.++..|++.+.+.+-..-.. .-.++..+|.++-.++ +.++.++|..++.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~--------~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAE--------PPDDVKDVFCKFSVGG-GHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCC--------ChHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 46899999998887765421111 1345889999996544 68999999988864
No 177
>PLN02230 phosphoinositide phospholipase C 4
Probab=26.47 E-value=2.2e+02 Score=28.76 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhc-------CCCCCccCHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVN-------ADDGKLVKEDEFKKLL 184 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D-------~DgDG~Is~eEF~~lm 184 (224)
..+..+|..+=.+ ++.+|.++|+.+|..-.- .+... +.+.+..+|.++- .-+.+.++.+.|..++
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~---~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGG---GEGET----SLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC---CcccC----CHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 5789999999544 489999999999987431 01111 2344555665431 1234569999999987
Q ss_pred HH
Q 027352 185 TE 186 (224)
Q Consensus 185 ~~ 186 (224)
..
T Consensus 101 ~s 102 (598)
T PLN02230 101 FS 102 (598)
T ss_pred cC
Confidence 54
No 178
>PF03500 Cellsynth_D: Cellulose synthase subunit D; InterPro: IPR022798 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity []. An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsD is 17.3kDa []. The function of BcsD is unknown. This entry represents the D subunit from bacterial cellulose synthase.; PDB: 3AJ1_B 3AJ2_A 3A8E_A.
Probab=26.31 E-value=97 Score=25.49 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=28.8
Q ss_pred cCHHHHHHHHHHhhhh----cCCCCCCchhhHHHHHHHHHHHhc
Q 027352 129 LSKDYLRVAVDAVAAS----AGLPPIGAVAQMDVVVSEAFKMVN 168 (224)
Q Consensus 129 Is~~ELr~~l~~lg~~----~g~p~~~~~e~~d~~~~e~f~~~D 168 (224)
+..+|++.+|..+|.. .-+|+..+-.+.+..++.....+|
T Consensus 16 ~g~~e~~~fLr~mG~rlA~r~PLp~~~Tv~~LE~~iN~~la~~~ 59 (144)
T PF03500_consen 16 AGEEELRAFLRRMGERLAARHPLPACETVADLERAINAVLARFD 59 (144)
T ss_dssp SHHHHHHHHHHHHHHHHCTTB-----SSHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 4688999999998854 467888888888888999888764
No 179
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=25.72 E-value=1.5e+02 Score=24.77 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=34.4
Q ss_pred CCCCCccCHHHHHHHHHHhhhhcCCCCCCc-------hhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 123 KDRNGKLSKDYLRVAVDAVAASAGLPPIGA-------VAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 123 ~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~-------~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
.||||++.+-=+--+|...| .||..- ..+...+|-+.+.+.+. | ++..|+.+++
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g----~~p~~~~~~~~~~~~~~r~~Y~~aL~~a~~---~--d~~~~~~~~~ 186 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQG----YSPFTWGSGSLALVGDLRKEYIAALKAADR---H--DYGPLLEFAR 186 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCC----CCCccccccchhhHHhhHHHHHHHHHHHhc---c--ChHHHHHHhC
Confidence 89999998865555555545 333311 13334678888888873 3 7778877663
No 180
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=25.68 E-value=2.6e+02 Score=22.98 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhc
Q 027352 113 TMTAALENVPKDRNGKLSKDYLRVAVDAVAASA 145 (224)
Q Consensus 113 ~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~ 145 (224)
.+.+....+|+.+-||+|.+||+.++=.+-..+
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l 102 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQIQQSL 102 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHh
Confidence 455567778999999999999999886655444
No 181
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=24.80 E-value=1.6e+02 Score=21.72 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=45.5
Q ss_pred hhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHH---HHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHh
Q 027352 118 LENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVS---EAFKMVNADDGKLVKEDEFKKLLTEILGSIMLQ 194 (224)
Q Consensus 118 F~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~---e~f~~~D~DgDG~Is~eEF~~lm~~~l~~~a~~ 194 (224)
|...|.. ....+.+||+.++..++. | .+..++ ..+++.+.+....+|.+|.+++|.+--.-|
T Consensus 26 ~~~idi~-~~~~~~~~l~~~~~~~~~--~---------~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Li--- 90 (105)
T cd02977 26 YEFIDYL-KEPPTKEELKELLAKLGL--G---------VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLI--- 90 (105)
T ss_pred cEEEeec-cCCCCHHHHHHHHHhcCC--C---------HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCee---
Confidence 6666665 355679999999988662 1 122222 456666665456789999999987654433
Q ss_pred hcCCCeEEeec
Q 027352 195 LEGNPIAISSN 205 (224)
Q Consensus 195 l~~~pi~~~~~ 205 (224)
..||++.-+
T Consensus 91 --kRPii~~~~ 99 (105)
T cd02977 91 --KRPIVVDGD 99 (105)
T ss_pred --eCCEEEECC
Confidence 357766543
No 182
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=24.61 E-value=1.6e+02 Score=21.06 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 027352 158 VVVSEAFKMVNADDGKLVKEDEFKKLLTEILGS 190 (224)
Q Consensus 158 ~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~~ 190 (224)
..+...++++- .++|+.+||++.|+.|.+.
T Consensus 28 ~~l~~~Y~~~k---~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 28 DLLQKHYEEFK---KKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHH---HCCCCHHHHHHHHHHHHHH
Confidence 33555555553 5689999999999988763
No 183
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=24.53 E-value=51 Score=26.25 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 027352 156 MDVVVSEAFKMVNADDGKLVKEDEFKKLLT 185 (224)
Q Consensus 156 ~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~ 185 (224)
+|+..+.+-.++-.|..|.+.|.||+.-+.
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 566688888999999999999999998765
No 184
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=24.47 E-value=1e+02 Score=26.97 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCccCHHHHHHHHHH-hhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 027352 126 NGKLSKDYLRVAVDA-VAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKKLLTEIL 188 (224)
Q Consensus 126 dG~Is~~ELr~~l~~-lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l 188 (224)
++.|+..+++..|.. +|.+- -..|-..++.+ -.|++|.+||-.++..+|
T Consensus 6 ~~Ridl~~lk~~l~~~LG~~~-----------~~~Y~~~l~~f---l~~klsk~Efd~~~~~~L 55 (252)
T PF12767_consen 6 NSRIDLEELKSQLQKRLGPDR-----------WKKYFQSLKRF---LSGKLSKEEFDKECRRIL 55 (252)
T ss_pred ccccCHHHHHHHHHHHHChHH-----------HHHHHHHHHHH---HHhccCHHHHHHHHHHHh
Confidence 577888888877764 66222 12244444444 358999999998777554
No 185
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=24.46 E-value=2e+02 Score=18.51 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCCCCCccCHHHHHH
Q 027352 131 KDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNADDGKLVKEDEFKK 182 (224)
Q Consensus 131 ~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is~eEF~~ 182 (224)
.+|...+|.++| . ...++..+++++.. ....+.+|.++
T Consensus 3 ~~d~~~AL~~LG----y--------~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLG----Y--------SKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTT----S---------HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHHcC----C--------CHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 356777887766 3 46668888888864 34466666544
No 186
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=24.42 E-value=87 Score=29.67 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=35.5
Q ss_pred HhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCc--hhhHHHHHHHHHHHhcCCC
Q 027352 117 ALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGA--VAQMDVVVSEAFKMVNADD 171 (224)
Q Consensus 117 aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~--~e~~d~~~~e~f~~~D~Dg 171 (224)
+|.++|++.+..++.+|-+..+..+|.+. +|..+. .++..+.+.++++++|..+
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~-Vpvlg~~~~~~~~~~~~eii~~L~~~g 217 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPH-VEILGVYTADEAVEEIYEIIERLNKEG 217 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCc-cceeeEEcHHHHHHHHHHHHHHhhhcC
Confidence 45666667799999999999999887533 333322 2222336777777776543
No 187
>PRK10788 periplasmic folding chaperone; Provisional
Probab=24.23 E-value=4.3e+02 Score=26.08 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=16.8
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHh
Q 027352 57 HGKPVSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 57 g~G~Id~~EFl~~~~~~~~~~~~~ 80 (224)
++-.|+..||...+......+.++
T Consensus 46 ng~~Is~~e~~~~~~~~~~~~~~~ 69 (623)
T PRK10788 46 NGQEISRAQLEQAFQSERNRLQQQ 69 (623)
T ss_pred CCEEeCHHHHHHHHHHHHHHHHHH
Confidence 667799999998876544444443
No 188
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=23.79 E-value=1.3e+02 Score=30.69 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCcccHH--HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhccccCCCcc---------cCHHHHHHHHHHHHHHHHHh
Q 027352 12 DGSMRDF--IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAIDEHGKP---------VSQETFLVEFKKIADCVAQR 80 (224)
Q Consensus 12 ~G~I~~~--L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~dg~G~---------Id~~EFl~~~~~~~~~~~~~ 80 (224)
+|+||+. |+.+|-.+|.+ .+.. -+..+. .+ +..||+ |.+..-.+-+-+++..-...
T Consensus 538 DGTITKSDvLGh~lp~iGkD----WTh~--GVAkLy----t~---Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~ 604 (738)
T KOG2116|consen 538 DGTITKSDVLGHVLPMIGKD----WTHT--GVAKLY----TK---IKENGYKILYLSARAIGQADSTRQYLKNVEQDGKK 604 (738)
T ss_pred CCceEhhhhhhhhhhhhcCc----chhh--hHHHHH----HH---HHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCcc
Confidence 6999996 99999999998 6665 555555 23 233442 34433333322344444556
Q ss_pred hhcCCeeeecccccccccchhhhccchHHHHHH-HHHHhhcCCCCCC
Q 027352 81 LKEQPVIVAHSENTFDGSGIKRLLSNKFELDKT-MTAALENVPKDRN 126 (224)
Q Consensus 81 ~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~-l~~aF~~~D~Dgd 126 (224)
+...||++.-+. +|-.-.+.-+...++.|+=. |..+=+.|-.+++
T Consensus 605 LPdGPViLSPd~-lf~Al~REVI~RkPe~FKIAcL~DIk~LF~p~~n 650 (738)
T KOG2116|consen 605 LPDGPVILSPDS-LFAALHREVIERKPEVFKIACLTDIKNLFPPSGN 650 (738)
T ss_pred CCCCCEEeCCCc-chHHHHHHHHHcCchhhhHHHHHHHHHhcCCCCC
Confidence 778898888776 55544444455555444322 3344444444444
No 189
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=23.79 E-value=2.2e+02 Score=23.26 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.0
Q ss_pred HHHHHHHHHHH--hcCCCCCc----cCHHHHHHHHHHHHHH
Q 027352 156 MDVVVSEAFKM--VNADDGKL----VKEDEFKKLLTEILGS 190 (224)
Q Consensus 156 ~d~~~~e~f~~--~D~DgDG~----Is~eEF~~lm~~~l~~ 190 (224)
.--...+||.+ .+.|..|. =||+||+.++..++..
T Consensus 18 l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~ 58 (141)
T PF12588_consen 18 LYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTT 58 (141)
T ss_pred HHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhh
Confidence 44557888888 23334443 3899999999888763
No 190
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=23.55 E-value=2.3e+02 Score=18.72 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=26.8
Q ss_pred cCCCCCCchhhHHHHHHHHHHHhcCCCCCccC--HHHHHHHHHHHHH
Q 027352 145 AGLPPIGAVAQMDVVVSEAFKMVNADDGKLVK--EDEFKKLLTEILG 189 (224)
Q Consensus 145 ~g~p~~~~~e~~d~~~~e~f~~~D~DgDG~Is--~eEF~~lm~~~l~ 189 (224)
+|+++..+.++...-+..+.+.+-.|..+... .++....+.+.+.
T Consensus 6 Lgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~ 52 (64)
T PF00226_consen 6 LGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYE 52 (64)
T ss_dssp CTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHH
Confidence 34556566666666677777777777655555 4455555544443
No 191
>PHA02692 hypothetical protein; Provisional
Probab=23.28 E-value=1.1e+02 Score=22.25 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 027352 157 DVVVSEAFKMVNADDGKLVKEDEFKKLLTEILG 189 (224)
Q Consensus 157 d~~~~e~f~~~D~DgDG~Is~eEF~~lm~~~l~ 189 (224)
|..+..+|.-+=.+.|- |++||+..++..+.
T Consensus 2 DKLyaaifGVFmss~Dd--DF~~Fi~vVksVLt 32 (70)
T PHA02692 2 DKLYAGVFGSFLSNSDE--DFEEFLNIVRTVMT 32 (70)
T ss_pred hhHHHHHHHhhcCCCHH--HHHHHHHHHHHHHc
Confidence 55677788888666655 89999999987765
No 192
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=23.23 E-value=1.3e+02 Score=30.57 Aligned_cols=54 Identities=7% Similarity=0.015 Sum_probs=41.0
Q ss_pred hhhhhccccCCCcccCHHHHHHHHHHHHHHHHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCC
Q 027352 47 PGIQSCAIDEHGKPVSQETFLVEFKKIADCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRN 126 (224)
Q Consensus 47 ~~l~~~~D~dg~G~Id~~EFl~~~~~~~~~~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~Dgd 126 (224)
+.+... |.+++|.++|.+|+..+.. +... + ....+.-.|+.+|.+++
T Consensus 559 rlF~l~-D~s~~g~Ltf~~lv~gL~~--------l~~~----------------------~--~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 559 RLFRLL-DDSMTGLLTFKDLVSGLSI--------LKAG----------------------D--ALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHhc-ccCCcceeEHHHHHHHHHH--------HHhh----------------------h--HHHHHHHHHhhccCCcc
Confidence 455675 9999999999999987753 1110 1 12467788999999999
Q ss_pred CccCHHHH
Q 027352 127 GKLSKDYL 134 (224)
Q Consensus 127 G~Is~~EL 134 (224)
...++|.
T Consensus 606 -~~d~e~~ 612 (671)
T KOG4347|consen 606 -ELDREEV 612 (671)
T ss_pred -ccccccc
Confidence 9999988
No 193
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.71 E-value=1.8e+02 Score=17.38 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=15.9
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCCCchh
Q 027352 128 KLSKDYLRVAVDAVAASAGLPPIGAVA 154 (224)
Q Consensus 128 ~Is~~ELr~~l~~lg~~~g~p~~~~~e 154 (224)
.++..||+..++..| +|..+...
T Consensus 3 ~l~~~~Lk~~l~~~g----l~~~G~K~ 25 (35)
T smart00513 3 KLKVSELKDELKKRG----LSTSGTKA 25 (35)
T ss_pred cCcHHHHHHHHHHcC----CCCCCCHH
Confidence 567889999998866 45444433
No 194
>PLN02223 phosphoinositide phospholipase C
Probab=22.32 E-value=2.7e+02 Score=27.75 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhc----CCCCCccCHHHHHHHHHH
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVN----ADDGKLVKEDEFKKLLTE 186 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D----~DgDG~Is~eEF~~lm~~ 186 (224)
..++.+|..+ .+++|..+.+.|+.+|.-+-..-|.. ..+.++.+..+++++.+-- .-..+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~-~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDED-GAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4678888888 47789999999999995442211110 0112333344444443221 112256999999988854
No 195
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=21.97 E-value=1.4e+02 Score=26.71 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHhcCC
Q 027352 112 KTMTAALENVPKDRNGKLSKDYLRVAVDAVAASAGLPPIGAVAQMDVVVSEAFKMVNAD 170 (224)
Q Consensus 112 ~~l~~aF~~~D~DgdG~Is~~ELr~~l~~lg~~~g~p~~~~~e~~d~~~~e~f~~~D~D 170 (224)
+.++++|+.++.| ||.++..+|.+-+. + +...+.+.++++-..
T Consensus 183 eAv~~IL~~L~~~-egrlse~eLAerlG-------V--------SRs~ireAlrkLE~a 225 (251)
T TIGR02787 183 EAVEHIFEELDGN-EGLLVASKIADRVG-------I--------TRSVIVNALRKLESA 225 (251)
T ss_pred HHHHHHHHHhccc-cccccHHHHHHHHC-------C--------CHHHHHHHHHHHHHC
Confidence 4577788888765 79999998877663 2 334488888887554
No 196
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.31 E-value=71 Score=22.74 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhh
Q 027352 12 DGSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVE 46 (224)
Q Consensus 12 ~G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~ 46 (224)
|=-|+.+ ++..+.++|.. |++. .++.++.
T Consensus 29 NPpine~mir~M~~QMG~k----pSek--qi~Q~m~ 58 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRK----PSEK--QIKQMMR 58 (64)
T ss_pred CCCCCHHHHHHHHHHhCCC----ccHH--HHHHHHH
Confidence 4568899 99999999998 8887 7777773
No 197
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=20.53 E-value=2.3e+02 Score=28.15 Aligned_cols=101 Identities=16% Similarity=0.253 Sum_probs=64.3
Q ss_pred ccccccccC-CcccHH-HHHHHHHhhhhcCCCCCCCHHHHHHhhhhhhhhcccc----C-CCcccCHHHHHHHHHHHHHH
Q 027352 4 IFSQIESPD-GSMRDF-IIKALDKLTVEQGMPPSSDSWVMSNIVEPGIQSCAID----E-HGKPVSQETFLVEFKKIADC 76 (224)
Q Consensus 4 ~F~~~D~d~-G~I~~~-L~~~l~~lg~~~g~~p~~~~~el~~i~~~~l~~~~D~----d-g~G~Id~~EFl~~~~~~~~~ 76 (224)
+|..|=... +++... |..+|+++|.. .+.+ .|.+||+ .|.. +|. + .-+.++.+.|-+.+..-+--
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLr----tsDP--RLk~mMd-~mKd-~dq~~~e~S~gw~LdKDlFKkcI~sSI~l 162 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLR----TSDP--RLKDMMD-EMKD-VDQEENESSSGWLLDKDLFKKCIFSSIVL 162 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCC----cCCc--hHHHHHH-HHHH-HHhhhcccccceeecHHHHHHhhccchhH
Confidence 455554444 899999 99999999987 5555 9999985 3334 243 1 33679999997765433333
Q ss_pred HHHhhhcCCeeeecccccccccchhhhccchHHHHHHHHHHhhcCCCCCCCcc
Q 027352 77 VAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTMTAALENVPKDRNGKL 129 (224)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~dGs~~~~~~~~e~~~~~~l~~aF~~~D~DgdG~I 129 (224)
+.+.+..+ .+ .=+=+.|...+..+|+..-.=.-|.+
T Consensus 163 vSqALrkq-mV----------------IPdw~~Fts~I~tIFEscke~seG~v 198 (622)
T KOG0506|consen 163 VSQALRKQ-MV----------------IPDWEEFTSHIDTIFESCKESSEGKV 198 (622)
T ss_pred HHHHHhcC-cc----------------CCcHHHHHHHHHHHHHHHHhcCCccH
Confidence 33333322 11 11234566788888888777667765
No 198
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=20.43 E-value=6.9e+02 Score=23.13 Aligned_cols=55 Identities=5% Similarity=-0.047 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHhhhhcC---CCCCCchhhHHHHHHHHHHHhcCCCCC---ccCHHHHHHHH
Q 027352 130 SKDYLRVAVDAVAASAG---LPPIGAVAQMDVVVSEAFKMVNADDGK---LVKEDEFKKLL 184 (224)
Q Consensus 130 s~~ELr~~l~~lg~~~g---~p~~~~~e~~d~~~~e~f~~~D~DgDG---~Is~eEF~~lm 184 (224)
+..|...+.+.||.... +...+.....-.-+++|+..++..|+| .|+-.+|....
T Consensus 196 s~~Ea~~W~keLg~~v~~~~~~~~G~I~~dl~~i~~m~~sl~~~g~g~~~~~~~A~YQAWq 256 (308)
T TIGR02553 196 KEADARRWRKELGLPVSCLQISDSGVVTVDPTPLIKMRDDLPPLGTGTELEWDNAKYQAWQ 256 (308)
T ss_pred cHHHHHHHHHHhCCCCccccccCCCeEEeChHHHHHHHHhcCCCCCCCcccccHHHHHHHH
Confidence 46789999988874332 111122222235688899998877665 46766665443
Done!