BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027354
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 432 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 488
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 427 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 483
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 432 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 488
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 432 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 488
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 432 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 488
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 432 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 488
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 333 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 389
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224
GR LY C G+ +A L+ E RLL T ++ L L DLS AR V
Sbjct: 331 GRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL-DLSTLKARTV 387
>pdb|3DXP|A Chain A, Crystal Structure Of A Putative Aminoglycoside
Phosphotransferase (Reut_a1007) From Ralstonia Eutropha
Jmp134 At 2.32 A Resolution
Length = 359
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 162 WHVCGGRALLYMAICSALTGLMEAATFLKLHHEREGRLL 200
WH+ G+ + A G+ + A++ KL+ +R GR +
Sbjct: 262 WHIAPGQFRGIAGLDHAALGIPDEASYRKLYEQRTGRPI 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.334 0.145 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,019,783
Number of Sequences: 62578
Number of extensions: 217513
Number of successful extensions: 477
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 9
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.5 bits)