Query 027354
Match_columns 224
No_of_seqs 136 out of 511
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02810 carbon-monoxide oxyge 100.0 1.6E-61 3.5E-66 413.4 23.7 212 12-223 5-220 (231)
2 PLN02680 carbon-monoxide oxyge 100.0 5.4E-60 1.2E-64 406.1 24.0 209 13-221 6-219 (232)
3 PLN02351 cytochromes b561 fami 100.0 1.6E-59 3.4E-64 404.0 23.9 214 5-224 4-225 (242)
4 KOG1619 Cytochrome b [Energy p 100.0 5.1E-57 1.1E-61 385.4 20.5 211 13-224 15-230 (245)
5 cd08764 Cyt_b561_CG1275_like N 100.0 2.8E-56 6.1E-61 380.4 18.3 193 30-224 2-200 (214)
6 cd08762 Cyt_b561_CYBASC3 Verte 100.0 1.7E-50 3.6E-55 335.2 19.9 169 20-190 3-174 (179)
7 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 2.5E-46 5.3E-51 304.3 17.0 147 41-189 1-150 (153)
8 cd08766 Cyt_b561_ACYB-1_like P 100.0 1.2E-45 2.6E-50 298.2 16.4 142 48-189 2-143 (144)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 1.7E-43 3.7E-48 285.4 16.1 137 52-188 5-142 (143)
10 cd08554 Cyt_b561 Eukaryotic cy 100.0 1.8E-32 4E-37 217.1 14.2 130 53-182 1-131 (131)
11 cd08761 Cyt_b561_CYB561D2_like 100.0 2.6E-32 5.6E-37 228.1 15.6 136 50-185 17-158 (183)
12 PF03188 Cytochrom_B561: Eukar 100.0 2.4E-31 5.2E-36 211.4 15.4 133 56-188 1-136 (137)
13 smart00665 B561 Cytochrome b-5 100.0 2.9E-30 6.3E-35 204.3 13.8 127 56-182 1-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.9 3.2E-23 7E-28 174.0 16.4 133 50-186 32-164 (191)
15 PF10348 DUF2427: Domain of un 98.4 1.6E-06 3.4E-11 66.7 9.2 87 50-145 14-102 (105)
16 KOG4293 Predicted membrane pro 97.5 3.1E-06 6.8E-11 79.1 -5.2 124 57-184 215-341 (403)
17 PF13301 DUF4079: Protein of u 97.4 0.0028 6.2E-08 53.0 11.6 93 86-184 79-171 (175)
18 PF03188 Cytochrom_B561: Eukar 97.0 0.0058 1.3E-07 48.1 8.6 94 50-143 31-130 (137)
19 smart00665 B561 Cytochrome b-5 96.8 0.026 5.7E-07 44.2 11.0 121 89-216 1-126 (129)
20 cd08554 Cyt_b561 Eukaryotic cy 96.5 0.061 1.3E-06 42.1 11.4 121 88-216 3-128 (131)
21 PF00033 Cytochrom_B_N: Cytoch 96.3 0.043 9.2E-07 44.6 9.8 138 86-223 8-176 (188)
22 cd08760 Cyt_b561_FRRS1_like Eu 96.3 0.1 2.2E-06 43.6 12.1 96 50-145 65-162 (191)
23 cd08761 Cyt_b561_CYB561D2_like 95.9 0.16 3.5E-06 42.2 11.4 126 86-217 20-153 (183)
24 cd08763 Cyt_b561_CYB561 Verteb 95.7 0.21 4.5E-06 40.5 10.9 123 86-217 6-134 (143)
25 cd08764 Cyt_b561_CG1275_like N 93.9 0.84 1.8E-05 39.4 10.5 125 86-217 23-153 (214)
26 cd08766 Cyt_b561_ACYB-1_like P 92.3 1.6 3.6E-05 35.3 9.5 123 86-217 7-134 (144)
27 PF01292 Ni_hydr_CYTB: Prokary 91.7 5.7 0.00012 32.0 12.3 136 86-222 6-169 (182)
28 PF13706 PepSY_TM_3: PepSY-ass 91.7 0.12 2.5E-06 32.2 1.7 30 119-148 3-32 (37)
29 PLN02680 carbon-monoxide oxyge 90.5 2.5 5.5E-05 36.9 9.3 127 83-216 43-172 (232)
30 PF13172 PepSY_TM_1: PepSY-ass 89.4 0.89 1.9E-05 27.5 4.1 29 156-184 2-30 (34)
31 PF13706 PepSY_TM_3: PepSY-ass 88.2 0.93 2E-05 28.1 3.7 30 156-185 1-30 (37)
32 cd08765 Cyt_b561_CYBRD1 Verteb 88.1 4.7 0.0001 33.1 8.8 135 3-144 3-144 (153)
33 cd08762 Cyt_b561_CYBASC3 Verte 87.4 6 0.00013 33.3 9.2 108 36-145 54-168 (179)
34 PF04238 DUF420: Protein of un 86.5 6.7 0.00014 31.4 8.6 89 88-185 6-103 (133)
35 PF00033 Cytochrom_B_N: Cytoch 84.4 19 0.00042 28.8 13.5 69 116-184 98-174 (188)
36 PLN02351 cytochromes b561 fami 83.8 30 0.00065 30.5 12.7 132 51-185 81-223 (242)
37 PRK11513 cytochrome b561; Prov 82.3 10 0.00022 31.5 8.3 93 86-185 9-105 (176)
38 COG3038 CybB Cytochrome B561 [ 79.5 15 0.00032 31.0 8.4 92 86-182 12-107 (181)
39 PF01292 Ni_hydr_CYTB: Prokary 78.2 33 0.00072 27.4 14.5 60 126-185 103-169 (182)
40 PF13703 PepSY_TM_2: PepSY-ass 77.8 13 0.00028 27.0 6.8 26 159-184 60-85 (88)
41 PRK05419 putative sulfite oxid 77.2 38 0.00083 28.9 10.5 57 116-178 36-92 (205)
42 TIGR02125 CytB-hydogenase Ni/F 75.3 46 0.001 27.6 11.2 136 86-221 7-190 (211)
43 PF04238 DUF420: Protein of un 74.5 42 0.00091 26.8 10.8 86 85-183 29-127 (133)
44 PF13703 PepSY_TM_2: PepSY-ass 74.3 15 0.00032 26.8 6.2 59 86-144 16-84 (88)
45 PF01794 Ferric_reduct: Ferric 71.3 39 0.00086 25.1 8.6 53 127-180 1-54 (125)
46 COG1612 CtaA Uncharacterized p 69.5 92 0.002 28.6 13.6 85 88-183 231-315 (323)
47 PF10348 DUF2427: Domain of un 66.1 57 0.0012 24.8 9.9 90 82-185 13-103 (105)
48 COG3038 CybB Cytochrome B561 [ 65.4 25 0.00054 29.6 6.5 54 131-185 19-72 (181)
49 PF03929 PepSY_TM: PepSY-assoc 64.0 8.1 0.00017 22.4 2.3 23 121-143 2-24 (27)
50 PF13301 DUF4079: Protein of u 57.7 91 0.002 26.0 8.6 104 90-207 55-160 (175)
51 PF10951 DUF2776: Protein of u 57.5 1.6E+02 0.0034 27.1 11.3 143 41-185 24-172 (347)
52 PF10067 DUF2306: Predicted me 54.9 42 0.00091 25.2 5.6 27 158-184 4-30 (103)
53 PF09990 DUF2231: Predicted me 50.9 82 0.0018 23.4 6.7 42 96-137 15-56 (104)
54 PF14358 DUF4405: Domain of un 50.8 75 0.0016 21.5 6.2 50 127-176 5-58 (64)
55 PRK03735 cytochrome b6; Provis 48.4 1.8E+02 0.0039 25.2 9.6 64 123-186 40-117 (223)
56 KOG1619 Cytochrome b [Energy p 47.5 2E+02 0.0044 25.4 11.6 23 121-143 162-184 (245)
57 cd00284 Cytochrome_b_N Cytochr 45.4 1.9E+02 0.0041 24.5 10.4 60 126-185 24-97 (200)
58 PF03729 DUF308: Short repeat 45.4 89 0.0019 20.7 7.7 66 137-214 5-70 (72)
59 PRK15006 thiosulfate reductase 45.0 2.2E+02 0.0047 25.1 11.4 63 158-220 175-243 (261)
60 PF11381 DUF3185: Protein of u 44.3 38 0.00082 23.4 3.5 50 164-213 1-57 (59)
61 COG2322 Predicted membrane pro 44.0 1.9E+02 0.0042 24.2 11.1 26 160-185 119-144 (177)
62 PLN02631 ferric-chelate reduct 43.2 1.5E+02 0.0033 30.1 9.0 24 157-180 186-209 (699)
63 PF06027 DUF914: Eukaryotic pr 42.7 2.7E+02 0.0059 25.6 11.5 56 87-144 128-183 (334)
64 PF13630 SdpI: SdpI/YhfL prote 39.8 1.2E+02 0.0027 20.7 6.3 30 156-185 20-49 (76)
65 PRK10263 DNA translocase FtsK; 38.2 2.7E+02 0.0059 30.6 10.2 60 90-150 20-88 (1355)
66 PF10856 DUF2678: Protein of u 37.0 49 0.0011 26.0 3.5 32 84-115 25-56 (118)
67 PRK13673 hypothetical protein; 36.9 2.1E+02 0.0045 22.5 8.4 84 84-184 28-111 (118)
68 PF13903 Claudin_2: PMP-22/EMP 35.4 2.1E+02 0.0046 22.2 7.7 18 89-106 103-120 (172)
69 CHL00070 petB cytochrome b6 33.3 3.2E+02 0.0069 23.6 10.9 61 125-185 34-108 (215)
70 PLN02810 carbon-monoxide oxyge 32.1 3.5E+02 0.0076 23.7 13.0 134 51-185 77-219 (231)
71 PF10856 DUF2678: Protein of u 30.6 71 0.0015 25.1 3.5 56 122-186 29-84 (118)
72 PF02628 COX15-CtaA: Cytochrom 30.4 3.8E+02 0.0083 23.6 12.9 91 84-184 65-155 (302)
73 PF12794 MscS_TM: Mechanosensi 30.2 4.3E+02 0.0092 24.1 19.9 100 82-186 118-223 (340)
74 PF02628 COX15-CtaA: Cytochrom 29.7 3.9E+02 0.0086 23.6 14.1 21 127-147 259-279 (302)
75 PF11158 DUF2938: Protein of u 29.6 3.1E+02 0.0067 22.3 9.7 88 85-175 57-148 (150)
76 PLN02844 oxidoreductase/ferric 29.4 2.6E+02 0.0057 28.6 8.2 24 157-180 189-212 (722)
77 KOG2290 Rhomboid family protei 28.1 2.9E+02 0.0063 27.0 7.7 82 14-111 540-621 (652)
78 TIGR01583 formate-DH-gamm form 27.9 3.6E+02 0.0077 22.5 12.7 142 83-224 6-175 (204)
79 PRK10179 formate dehydrogenase 27.0 3.9E+02 0.0085 22.7 12.8 63 158-220 108-175 (217)
80 PF10215 Ost4: Oligosaccaryltr 27.0 93 0.002 19.2 2.9 21 197-219 8-28 (35)
81 PF02322 Cyto_ox_2: Cytochrome 24.1 5.5E+02 0.012 23.3 12.6 62 121-185 156-217 (328)
82 PF08507 COPI_assoc: COPI asso 23.9 3.5E+02 0.0076 21.1 13.0 51 132-182 34-84 (136)
83 COG4267 Predicted membrane pro 23.9 6.6E+02 0.014 24.2 12.4 26 86-111 101-126 (467)
84 PRK10639 formate dehydrogenase 22.0 4.8E+02 0.01 21.9 13.4 65 118-183 105-173 (211)
85 PF07457 DUF1516: Protein of u 21.5 3.6E+02 0.0077 20.7 5.9 47 82-130 28-74 (110)
No 1
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=1.6e-61 Score=413.40 Aligned_cols=212 Identities=37% Similarity=0.775 Sum_probs=202.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheecccccchhHHHHHH
Q 027354 12 RSASRLTIGAHLFGILAIILLLVWLLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFASRIVQKTVHM 91 (224)
Q Consensus 12 ~~~~~~~~~~~~l~i~~~~lv~~W~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~~~~~~k~iH~ 91 (224)
..+.|+..++|++|+++++++++|+.+||||++|+++++..+|||||+||++||+++++|||++||..|.+|+.+|.+|+
T Consensus 5 ~~~~~~~~~a~~lg~~~~vlvl~W~~~~rgG~aw~~~~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~ 84 (231)
T PLN02810 5 INALPLTFVAHALAVIGAIMVLVWSIYYRGGLAWEATNKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHL 84 (231)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHH
Confidence 35679999999999999999999999999999999877778999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHH
Q 027354 92 LLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALL 171 (224)
Q Consensus 92 ~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~ 171 (224)
.+|.+|++|+++|++++|+|||++++|||||+|||+|++|++++.+||+.|+..|++|+.+++.|++++|+|+++|+.+|
T Consensus 85 ~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if 164 (231)
T PLN02810 85 VLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVY 164 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh----cCCchhHHHHHHHHHHHHHHHHHHhheecccC
Q 027354 172 YMAICSALTGLMEAATFLKL----HHEREGRLLNFTGLSILLFGLFVDLSVALARY 223 (224)
Q Consensus 172 ~l~~~t~~lGl~~~~~f~~~----~~~~e~~i~n~~Gl~~~~~~~~v~~~~~~~~~ 223 (224)
+++++|+.+|+.||.+|.+. ++|+|++++|++|+++++||.+|+++++.+..
T Consensus 165 ~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~~ 220 (231)
T PLN02810 165 ILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVLTALAQSP 220 (231)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999988652 68899999999999999999999999998753
No 2
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=5.4e-60 Score=406.15 Aligned_cols=209 Identities=40% Similarity=0.760 Sum_probs=199.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheecccccchhHHHHHHH
Q 027354 13 SASRLTIGAHLFGILAIILLLVWLLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFASRIVQKTVHML 92 (224)
Q Consensus 13 ~~~~~~~~~~~l~i~~~~lv~~W~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~~~~~~k~iH~~ 92 (224)
.+.|...++|++|+++++++++|+.+||||++|+++++..+|||||+||++||+++++||+++||+.|.+|+.+|++|+.
T Consensus 6 ~~~~~~~~~~~~g~~~~~lv~~W~~~~rgG~aw~~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~ 85 (232)
T PLN02680 6 IRFPIFMLVRLLGVIVAALVLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLT 85 (232)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCcceEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHH
Confidence 34577779999999999999999999999999987667789999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHH
Q 027354 93 LHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLY 172 (224)
Q Consensus 93 l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~ 172 (224)
+|.+|++|+++|+++++++||++++|||||+|||+|++|++++.+|++.|+.+|++|+.+++.|++++|+|+++|+++|+
T Consensus 86 L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~ 165 (232)
T PLN02680 86 LQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYA 165 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh-----cCCchhHHHHHHHHHHHHHHHHHHhheecc
Q 027354 173 MAICSALTGLMEAATFLKL-----HHEREGRLLNFTGLSILLFGLFVDLSVALA 221 (224)
Q Consensus 173 l~~~t~~lGl~~~~~f~~~-----~~~~e~~i~n~~Gl~~~~~~~~v~~~~~~~ 221 (224)
++++|+.+|+.||.+|.++ ++|+|++++|++|+++++||.+|+++++.|
T Consensus 166 LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~p 219 (232)
T PLN02680 166 LAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILAIVTP 219 (232)
T ss_pred HHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999988652 578999999999999999999999999996
No 3
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=1.6e-59 Score=403.96 Aligned_cols=214 Identities=36% Similarity=0.639 Sum_probs=198.0
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCC-CCCCccc-ccchhHHHHHHHHHHHhHHhheeccccc
Q 027354 5 IDRVSYRRSASRLTIGAHLFGILAIILLLVWLLHYRDGIEYDS-DDPHRVF-NVHPFLMFCGFVFLAGQAMMAYKTVFAS 82 (224)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~i~~~~lv~~W~~~~~~G~~w~~-~~~~~~F-~~Hp~lM~lgfv~l~~eaiL~~r~~~~~ 82 (224)
-|+.+|. |+..++|++|+++++++++|+.+||||++|++ ++++.+| ||||+||++||+++++|||++||..|.+
T Consensus 4 ~~~~~~~----~~~~~a~~lGl~~~~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~ 79 (242)
T PLN02351 4 VDSSSLL----PLLLFARLSGLVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGS 79 (242)
T ss_pred ccccccc----hHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCccceeecccHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3555555 99999999999999999999999999999996 4445567 7999999999999999999999999888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHH
Q 027354 83 RIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAG-LTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLP 161 (224)
Q Consensus 83 ~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~-~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~ 161 (224)
|+.+|.+|+.+|.+|++++++|+++ ++|++++ +|||||+|||+|++|++++.+||+.|+.+|++|+.+...|++++|
T Consensus 80 ~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P 157 (242)
T PLN02351 80 RKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLP 157 (242)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhH
Confidence 8889999999999999999999999 5666554 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhHHHHHHHHHHHHHHHHHHhheecccCC
Q 027354 162 WHVCGGRALLYMAICSALTGLMEAATFLKL-----HHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224 (224)
Q Consensus 162 ~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~-----~~~~e~~i~n~~Gl~~~~~~~~v~~~~~~~~~~ 224 (224)
+|+++|+.+|+++++|+.+|+.||.+|.++ ++|+|++++|++|+++++||.+|++++++|+||
T Consensus 158 ~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~k 225 (242)
T PLN02351 158 WHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVLPKYQ 225 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 999999999999999999999999988652 688999999999999999999999999999886
No 4
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=100.00 E-value=5.1e-57 Score=385.40 Aligned_cols=211 Identities=40% Similarity=0.840 Sum_probs=201.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheecccc-cchhHHHHHH
Q 027354 13 SASRLTIGAHLFGILAIILLLVWLLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFA-SRIVQKTVHM 91 (224)
Q Consensus 13 ~~~~~~~~~~~l~i~~~~lv~~W~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~-~~~~~k~iH~ 91 (224)
...-...++|++|.+.++++++|+++||||++|+++ ++..|||||++|.+||+++.+||+|+||.++. +|+.+|.+|.
T Consensus 15 ~f~~~~~~s~l~G~i~v~lvl~W~~~yr~Glaw~~~-~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~ 93 (245)
T KOG1619|consen 15 RFLIIVVVSHLLGFITVVLVLYWVNTYRGGLAWSSS-PNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHL 93 (245)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCC-cchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHH
Confidence 344677899999999999999999999999999976 48999999999999999999999999999776 8889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHH
Q 027354 92 LLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALL 171 (224)
Q Consensus 92 ~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~ 171 (224)
.+|..|++++++|++++|++||+++++||||+|||+|+.+++++.+||+.|+.+|++|+.+++.|++++|+|+++|+.+|
T Consensus 94 ~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f 173 (245)
T KOG1619|consen 94 GLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIF 173 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh----cCCchhHHHHHHHHHHHHHHHHHHhheecccCC
Q 027354 172 YMAICSALTGLMEAATFLKL----HHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224 (224)
Q Consensus 172 ~l~~~t~~lGl~~~~~f~~~----~~~~e~~i~n~~Gl~~~~~~~~v~~~~~~~~~~ 224 (224)
+++++|+.+|+.||.+|.+. ++++|++++|++|+.+++||++|++.+++|+||
T Consensus 174 ~lai~ta~~Gl~ek~~f~~~~~~s~~~~e~~l~n~~gv~~il~g~~Vl~~v~~~~~k 230 (245)
T KOG1619|consen 174 ILAIVTALTGLLEKLTFLCFGDLSTKNPEGYLVNFLGVFIILFGVLVLTLVTPPPWK 230 (245)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHheEEEecCCCC
Confidence 99999999999999988652 678999999999999999999999999999886
No 5
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.8e-56 Score=380.41 Aligned_cols=193 Identities=39% Similarity=0.699 Sum_probs=182.4
Q ss_pred HHHHHHHHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheecccc-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 30 ILLLVWLLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFA-SRIVQKTVHMLLHLTAFCLGVVGLCAV 108 (224)
Q Consensus 30 ~lv~~W~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~-~~~~~k~iH~~l~~la~~~~~iG~~ai 108 (224)
+++++|+.+||||++|++ ++.+|||||++|++||+++++||+++||+.+. +|+.+|.+|+.+|.+|++++++|++++
T Consensus 2 ~l~~~W~~~~rgG~~~~~--~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~av 79 (214)
T cd08764 2 VLVGIWLGKFRGGFSWTG--PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAV 79 (214)
T ss_pred EEEeehHHHcCCccccCC--CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999986 56789999999999999999999999999886 666788999999999999999999999
Q ss_pred hhhhhcc--CCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 109 FKYHDMA--GLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAA 186 (224)
Q Consensus 109 ~~~k~~~--~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~ 186 (224)
|++||++ ++|||||+|||+|+++++++.+|++.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||.
T Consensus 80 f~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~ 159 (214)
T cd08764 80 FDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKA 159 (214)
T ss_pred HHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred Hhhh---hcCCchhHHHHHHHHHHHHHHHHHHhheecccCC
Q 027354 187 TFLK---LHHEREGRLLNFTGLSILLFGLFVDLSVALARYV 224 (224)
Q Consensus 187 ~f~~---~~~~~e~~i~n~~Gl~~~~~~~~v~~~~~~~~~~ 224 (224)
.|.+ +++|+|++++|++|+++++||++|++++++|+||
T Consensus 160 ~f~~~~~~~~~~e~~l~N~~gl~~~~fg~~V~~~~~~~~~k 200 (214)
T cd08764 160 FFSLNKYSNLPAEGVLGNFIGIVLVIFGGLVVYLVTEPDYK 200 (214)
T ss_pred HhcccccccCChhHHHHHHHHHHHHHHHHHHHHhccCcccC
Confidence 8865 3688999999999999999999999999999987
No 6
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.7e-50 Score=335.20 Aligned_cols=169 Identities=36% Similarity=0.687 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheeccc---ccchhHHHHHHHHHHH
Q 027354 20 GAHLFGILAIILLLVWLLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVF---ASRIVQKTVHMLLHLT 96 (224)
Q Consensus 20 ~~~~l~i~~~~lv~~W~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~---~~~~~~k~iH~~l~~l 96 (224)
+.-++|+++++++++|+.+||||++||+++ +.|||||+||++||+++++||+++||..+ .+|+.+|.+|+.+|.+
T Consensus 3 ~~~~lg~~~~~lv~~W~~~~rgG~~w~~~~--~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~ 80 (179)
T cd08762 3 LLGILGIACVVLVVHWNQMWRGGFAWDGSS--KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLL 80 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCC--CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHH
Confidence 456799999999999999999999999743 48999999999999999999999999654 3778899999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 027354 97 AFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAIC 176 (224)
Q Consensus 97 a~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~ 176 (224)
|++++++|++++|++||++++||+||+|||+|++|++++.+|++.|+.+|++|+.+++.|++++|+|+++|+.+|+++++
T Consensus 81 Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laia 160 (179)
T cd08762 81 AFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIA 160 (179)
T ss_pred HHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 027354 177 SALTGLMEAATFLK 190 (224)
Q Consensus 177 t~~lGl~~~~~f~~ 190 (224)
|+.+|+.||.+|..
T Consensus 161 t~~lGl~ek~~f~~ 174 (179)
T cd08762 161 SCISGINEKLFFSL 174 (179)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
No 7
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=2.5e-46 Score=304.33 Aligned_cols=147 Identities=36% Similarity=0.724 Sum_probs=138.7
Q ss_pred CccccCCCCCCcccccchhHHHHHHHHHHHhHHhheeccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 027354 41 DGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVF---ASRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGL 117 (224)
Q Consensus 41 ~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~---~~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~ 117 (224)
||++||++ ...|||||+||++||+++++||||+||..+ .+|+.+|++|+.+|.+|++|+++|++++++|||++++
T Consensus 1 ~g~~w~~~--~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~ 78 (153)
T cd08765 1 EGLGWDGG--AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI 78 (153)
T ss_pred CCCCCCCC--CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 69999853 469999999999999999999999999653 3688899999999999999999999999999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027354 118 TDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATFL 189 (224)
Q Consensus 118 ~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~ 189 (224)
|||||+|||+|++|++++.+|++.|+.+|++|+.+.+.|++++|+|+++|+++|+++++|+.+|+.||.+|.
T Consensus 79 ~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek~~f~ 150 (153)
T cd08765 79 PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEKLIFS 150 (153)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999888899999999999999999999999999999998764
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.2e-45 Score=298.19 Aligned_cols=142 Identities=56% Similarity=1.040 Sum_probs=137.3
Q ss_pred CCCCcccccchhHHHHHHHHHHHhHHhheecccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhh
Q 027354 48 DDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFASRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWI 127 (224)
Q Consensus 48 ~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~l 127 (224)
+||..+|||||+||++||+++++||+++||+.|.+|+.+|++|+.+|.+|++|+++|++++|+|||++++|||||+|||+
T Consensus 2 ~~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwl 81 (144)
T cd08766 2 DNKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWL 81 (144)
T ss_pred CCCcceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHH
Confidence 45889999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027354 128 GMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATFL 189 (224)
Q Consensus 128 Gl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~ 189 (224)
|++|++++.+|++.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||..|.
T Consensus 82 Gl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek~~f~ 143 (144)
T cd08766 82 GIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEKLTFL 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888899999999999999999999999999999998765
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.7e-43 Score=285.36 Aligned_cols=137 Identities=44% Similarity=0.785 Sum_probs=131.9
Q ss_pred cccccchhHHHHHHHHHHHhHHhheecccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHH
Q 027354 52 RVFNVHPFLMFCGFVFLAGQAMMAYKTVFA-SRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMG 130 (224)
Q Consensus 52 ~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~-~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~ 130 (224)
++|||||++|++||+++++||+++||..+. +|+.+|++|+.+|.+|++++++|+.++++|||++++|||||+|||+|++
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~ 84 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGIL 84 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHH
Confidence 499999999999999999999999998875 7888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027354 131 TFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATF 188 (224)
Q Consensus 131 ~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f 188 (224)
+++++.+|++.|+..|++|+.+.+.|++++|+||++|+++|+++++|+.+|+.||..|
T Consensus 85 t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek~~f 142 (143)
T cd08763 85 TFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEKLLF 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999889999999999999999999999999999999643
No 10
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=100.00 E-value=1.8e-32 Score=217.14 Aligned_cols=130 Identities=44% Similarity=0.806 Sum_probs=123.0
Q ss_pred ccccchhHHHHHHHHHHHhHHhheecccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHH
Q 027354 53 VFNVHPFLMFCGFVFLAGQAMMAYKTVFA-SRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGT 131 (224)
Q Consensus 53 ~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~-~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~ 131 (224)
.|+|||++|++||+++++||++.+|..+. +|+.++++|+.+|.++++++++|+.+++++|++++++||+|+|||+|+++
T Consensus 1 ~f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~ 80 (131)
T cd08554 1 EFNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLAT 80 (131)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHH
Confidence 38999999999999999999999999855 78889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 132 FCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGL 182 (224)
Q Consensus 132 ~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 182 (224)
++++++|++.|+..++.|..+.+.|+..+++||++|+++++++++|+.+|+
T Consensus 81 ~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988876667899999999999999999999999984
No 11
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.6e-32 Score=228.15 Aligned_cols=136 Identities=24% Similarity=0.379 Sum_probs=126.3
Q ss_pred CCcccccchhHHHHHHHHHHHhHHhheeccc----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccch
Q 027354 50 PHRVFNVHPFLMFCGFVFLAGQAMMAYKTVF----ASRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHS 125 (224)
Q Consensus 50 ~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~----~~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs 125 (224)
..++|+|||++|++||+++++||++.+|+.. .+|+.++++|+.+|.++++++++|+.+++.||++++++||+|+||
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~ 96 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHG 96 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhH
Confidence 5689999999999999999999999988652 267788999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhccCCch--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 126 WIGMGTFCLFGLQWLFGFSIYMLRGPTE--ARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 126 ~lGl~~~~l~~lQ~~~G~~~~l~p~~~~--~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
|+|+++++++.+|++.|+..++.|...+ +.|+.++++||++|+++++++++|+.+|++|.
T Consensus 97 ~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 158 (183)
T cd08761 97 ILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLETR 158 (183)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999888776554 57889999999999999999999999999995
No 12
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.97 E-value=2.4e-31 Score=211.37 Aligned_cols=133 Identities=34% Similarity=0.521 Sum_probs=124.2
Q ss_pred cchhHHHHHHHHHHHhHHhheecc--cc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHH
Q 027354 56 VHPFLMFCGFVFLAGQAMMAYKTV--FA-SRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTF 132 (224)
Q Consensus 56 ~Hp~lM~lgfv~l~~eaiL~~r~~--~~-~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~ 132 (224)
|||+||++||++++|||++++|.. +. +|+.++++|+.+|.++++++++|+.+++.+|++++++||+|+|+|+|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 899999999999999999999963 22 777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027354 133 CLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATF 188 (224)
Q Consensus 133 ~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f 188 (224)
+++.+|++.|+..+..|+.+++.|+.+.++|++.|+++++++++|+.+|+.|+..|
T Consensus 81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~~~f 136 (137)
T PF03188_consen 81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEKAWF 136 (137)
T ss_pred HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888877778889999999999999999999999999998644
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.97 E-value=2.9e-30 Score=204.31 Aligned_cols=127 Identities=39% Similarity=0.733 Sum_probs=118.3
Q ss_pred cchhHHHHHHHHHHHhHHhheec-c-cccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHH
Q 027354 56 VHPFLMFCGFVFLAGQAMMAYKT-V-FASRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFC 133 (224)
Q Consensus 56 ~Hp~lM~lgfv~l~~eaiL~~r~-~-~~~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~ 133 (224)
|||++|++||++++|||++.+|. . +.+|+.++++|+.+|.++++++++|+.+++++|++++++||+|+|||+|+++++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~ 80 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFV 80 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHH
Confidence 79999999999999999999996 3 337788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 134 LFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGL 182 (224)
Q Consensus 134 l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 182 (224)
+.++|++.|+..+..|..+.+.|+.++++|++.|+++++++++|+.+|+
T Consensus 81 l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 81 LAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999987776655667899999999999999999999999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.91 E-value=3.2e-23 Score=173.98 Aligned_cols=133 Identities=24% Similarity=0.234 Sum_probs=119.7
Q ss_pred CCcccccchhHHHHHHHHHHHhHHhheecccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHH
Q 027354 50 PHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFASRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGM 129 (224)
Q Consensus 50 ~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl 129 (224)
++..+++|+++|++||.+++|+|++..|..+.+++.+.++|+.+|+++++++++|+..++.++ +.+.+|+++.|+|+|+
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl 110 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGI 110 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhH
Confidence 567899999999999999999999999976556677889999999999999999999999988 5678899999999999
Q ss_pred HHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 130 GTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAA 186 (224)
Q Consensus 130 ~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~ 186 (224)
++++++.+|++.|++ .|...++.|+..++.|++.|+++++++++|+.+|+.+..
T Consensus 111 ~~~~l~~lQ~~~G~~---~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~ 164 (191)
T cd08760 111 IVLALAILQPLLGLL---RPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAG 164 (191)
T ss_pred HHHHHHHHHHHHHHh---cCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999995 354444467788999999999999999999999998863
No 15
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.45 E-value=1.6e-06 Score=66.74 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=72.0
Q ss_pred CCcccccchhHHHHHHHHHHHhHHhheecccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC--cccchhh
Q 027354 50 PHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFASRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDM--YSLHSWI 127 (224)
Q Consensus 50 ~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf--~S~Hs~l 127 (224)
.+...-+|..+|+++++++.|-+++. +..+ .+.|...|++++++..+|+......+.+ .|++ .+.|+.+
T Consensus 14 ~~~~l~~Hi~lm~la~~il~Pi~lvL-~~~~------sr~~~~~q~~~~~l~~~g~~~g~~~~~~--~p~lyp~n~H~k~ 84 (105)
T PF10348_consen 14 HRSALYAHIVLMTLAWVILYPIGLVL-GNAR------SRWHLPVQTVFLVLMILGLFLGSVYNGS--TPDLYPNNAHGKM 84 (105)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHcc------chHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCHHHHH
Confidence 46788999999999999999999774 3332 2459999999999999999887655443 3455 7999999
Q ss_pred HHHHHHHHHHHHhhhhHh
Q 027354 128 GMGTFCLFGLQWLFGFSI 145 (224)
Q Consensus 128 Gl~~~~l~~lQ~~~G~~~ 145 (224)
|.+.+++...|.++|+..
T Consensus 85 g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 85 GWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999964
No 16
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=97.54 E-value=3.1e-06 Score=79.11 Aligned_cols=124 Identities=22% Similarity=0.192 Sum_probs=104.0
Q ss_pred chhHHHHHHHHHHHhHHhheeccccc---chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHH
Q 027354 57 HPFLMFCGFVFLAGQAMMAYKTVFAS---RIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFC 133 (224)
Q Consensus 57 Hp~lM~lgfv~l~~eaiL~~r~~~~~---~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~ 133 (224)
|+++|..+..++++-+++.-|..+.. ...+..+|..+|..++++.+.|.....+.-++ ....-++.|.-+|+...+
T Consensus 215 hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~-s~~~~~~~h~~~G~~~~~ 293 (403)
T KOG4293|consen 215 HGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNE-SDGTVYSAHTDLGIILLV 293 (403)
T ss_pred HHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccC-CCceeeeecccchhHHHH
Confidence 99999999999999999999887653 56788999999999988878877765443332 344668999999999999
Q ss_pred HHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 134 LFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 134 l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 184 (224)
+.++|++..+ +-|....+.|+....+|+..|+...+++.++...|+..
T Consensus 294 l~~lQ~~~~l---~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l 341 (403)
T KOG4293|consen 294 LAFLQPLALL---LRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLEL 341 (403)
T ss_pred HHHHHHHHHH---hcCCcccCceeccceeeeecCcceeeehhhHHhhhHhh
Confidence 9999998766 34766666788888999999999999999999999874
No 17
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=97.42 E-value=0.0028 Score=53.00 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVC 165 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~ 165 (224)
.+..|.-.-...+.+...|..---.+-..++.+=|.|.|=|.|+..+.++..+....- ..+++. ++..++.|..
T Consensus 79 ~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~--~i~~g~----~~~~R~lHi~ 152 (175)
T PF13301_consen 79 ARDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVP--QIQKGN----RPWARRLHIY 152 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHH--HHccCC----chhHHHHHHH
Confidence 3566775555444433333322111111222346899999999999999998876544 234432 3456679999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027354 166 GGRALLYMAICSALTGLME 184 (224)
Q Consensus 166 ~G~~~~~l~~~t~~lGl~~ 184 (224)
.+..++++-..-+.+|...
T Consensus 153 lN~~~l~Lf~~q~itG~~i 171 (175)
T PF13301_consen 153 LNSLALLLFAWQAITGWRI 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 18
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.97 E-value=0.0058 Score=48.06 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=67.1
Q ss_pred CCcccccchhHHHHHHHHHHHhHHhheecccc-cchhHHHHHHHHHHHHHHHH----HHHHHHHhh-hhhccCCCCCccc
Q 027354 50 PHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFA-SRIVQKTVHMLLHLTAFCLG----VVGLCAVFK-YHDMAGLTDMYSL 123 (224)
Q Consensus 50 ~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~-~~~~~k~iH~~l~~la~~~~----~iG~~ai~~-~k~~~~~~hf~S~ 123 (224)
....+..|..+|++|+++...-.+..+..... ++...+..|..+..+++++. +.|+..-+. ..+++.++-+.-+
T Consensus 31 ~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~ 110 (137)
T PF03188_consen 31 RKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKW 110 (137)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHH
Confidence 56789999999999998777666666655432 44555678998888776654 445444442 1222234446667
Q ss_pred chhhHHHHHHHHHHHHhhhh
Q 027354 124 HSWIGMGTFCLFGLQWLFGF 143 (224)
Q Consensus 124 Hs~lGl~~~~l~~lQ~~~G~ 143 (224)
|.++|.++.++...+...|+
T Consensus 111 H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 111 HRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998
No 19
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.80 E-value=0.026 Score=44.22 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=77.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHH
Q 027354 89 VHMLLHLTAFC-LGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGG 167 (224)
Q Consensus 89 iH~~l~~la~~-~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G 167 (224)
.|..+..+|+. +...|+...-...+..+++....+|-++..+++++.+.-...++... . ...++.....|.+.|
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~---~--~~~~~~~~s~H~~lG 75 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISH---N--ESGIANFYSLHSWLG 75 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c--ccCCCCccchhHHHH
Confidence 48899999985 45566555432123335567778899999988888776655555321 1 111245667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHH----HHHHHHHHHHHHHHh
Q 027354 168 RALLYMAICSALTGLMEAATFLKLHHEREGRLLN----FTGLSILLFGLFVDL 216 (224)
Q Consensus 168 ~~~~~l~~~t~~lGl~~~~~f~~~~~~~e~~i~n----~~Gl~~~~~~~~v~~ 216 (224)
++++++.......|+... +.+....+.....| ++|.++...+.+-++
T Consensus 76 l~~~~l~~~Q~~~G~~~~--~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~ 126 (129)
T smart00665 76 LAAFVLAGLQWLSGFLRP--LPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIF 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999853 22210011112222 888887777766543
No 20
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.52 E-value=0.061 Score=42.14 Aligned_cols=121 Identities=21% Similarity=0.190 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHH
Q 027354 88 TVHMLLHLTAFC-LGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCG 166 (224)
Q Consensus 88 ~iH~~l~~la~~-~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~ 166 (224)
..|..++.+++. +...|+.+. +.-+..+++...-+|..+..++.++.+.=...++. ... .+.++.....|.++
T Consensus 3 ~~H~~lm~~g~~~l~~~~il~~-r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~----~~~-~~~~~h~~s~Hs~l 76 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALLVY-RVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFL----FHN-AGGIANLYSLHSWL 76 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHh-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----hcc-ccCcccchhHHHHH
Confidence 369999999986 555555443 32122234455678999998777766644444442 121 22234567799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHH----HHHHHHHHHHHHHHHh
Q 027354 167 GRALLYMAICSALTGLMEAATFLKLHHEREGRLL----NFTGLSILLFGLFVDL 216 (224)
Q Consensus 167 G~~~~~l~~~t~~lGl~~~~~f~~~~~~~e~~i~----n~~Gl~~~~~~~~v~~ 216 (224)
|++++++.......|+... +..+...+..... ..+|.++.+.+++.++
T Consensus 77 Gl~~~~l~~~q~~~G~~~~--~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~ 128 (131)
T cd08554 77 GLATVLLFLLQFLSGFVLF--LLPLLRLSYRSSLLPFHRFFGLAIFVLAIATIL 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 2211111011222 2888887776665543
No 21
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=96.32 E-value=0.043 Score=44.62 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhh---------------
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFK----YHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIY--------------- 146 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~----~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~--------------- 146 (224)
.+..||..-.+-+.+...|+...+. ............+|-++|++..++.+...+.++..-
T Consensus 8 ~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T PF00033_consen 8 TRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQ 87 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHH
Confidence 4678998888888888899988633 222334456679999999999999999998888650
Q ss_pred --hccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HH-Hh--hhhcCCc---hhHHH---HHHHHHHHHHHHHH
Q 027354 147 --MLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLME-AA-TF--LKLHHER---EGRLL---NFTGLSILLFGLFV 214 (224)
Q Consensus 147 --l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~-~~-~f--~~~~~~~---e~~i~---n~~Gl~~~~~~~~v 214 (224)
..+..+....++..+..+..-..++.+.....++|+.- .. .+ .....++ ..... +..+.+++++.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~H 167 (188)
T PF00033_consen 88 YRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIH 167 (188)
T ss_dssp HHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112234667888888899999999999999875 00 00 0001111 11111 27777788888888
Q ss_pred HhheecccC
Q 027354 215 DLSVALARY 223 (224)
Q Consensus 215 ~~~~~~~~~ 223 (224)
+++++...+
T Consensus 168 i~~a~~~~~ 176 (188)
T PF00033_consen 168 IYAAIFHHF 176 (188)
T ss_dssp HHHHHHBT-
T ss_pred HHHHHHHhh
Confidence 888776644
No 22
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.30 E-value=0.1 Score=43.56 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCcccccchhHHHHHHHHHHHhHHhheecccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh--ccCCCCCcccchhh
Q 027354 50 PHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFASRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHD--MAGLTDMYSLHSWI 127 (224)
Q Consensus 50 ~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~--~~~~~hf~S~Hs~l 127 (224)
....|.+|-.+|++++++-..-.++.+.....++...+..|..+-.+.+++.++=....+..++ ++.++-+...|.++
T Consensus 65 ~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~ 144 (191)
T cd08760 65 DPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWL 144 (191)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHH
Confidence 4578999999999998776555555555432233345568988887777666554443333332 22355678999999
Q ss_pred HHHHHHHHHHHHhhhhHh
Q 027354 128 GMGTFCLFGLQWLFGFSI 145 (224)
Q Consensus 128 Gl~~~~l~~lQ~~~G~~~ 145 (224)
|.++.++-..|...|+-.
T Consensus 145 G~~~~~l~~v~i~~G~~~ 162 (191)
T cd08760 145 GRAALILAIVNIFLGLDL 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999954
No 23
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.91 E-value=0.16 Score=42.22 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDM---AGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPW 162 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~---~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~ 162 (224)
....|..++.+++.+..-.....++.... .+++.-...|.++..+++.+.+.- +..-...+ ....++-+...
T Consensus 20 ~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G----~~~~~~~~-~~~~~~hf~s~ 94 (183)
T cd08761 20 LFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAG----LVAIYYNK-ERNGKPHFTSW 94 (183)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhc-ccCCCCCccch
Confidence 45689999999988544444443442111 245566789999998777765533 32222222 11223456679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----CCchhHHHH-HHHHHHHHHHHHHHhh
Q 027354 163 HVCGGRALLYMAICSALTGLMEAATFLKLH----HEREGRLLN-FTGLSILLFGLFVDLS 217 (224)
Q Consensus 163 H~~~G~~~~~l~~~t~~lGl~~~~~f~~~~----~~~e~~i~n-~~Gl~~~~~~~~v~~~ 217 (224)
|.+.|+.++++...+...|+.... ..... .++.-...+ .+|.++.+.+.+-+..
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~~~-~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~l 153 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLALLY-PPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVL 153 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHh-hHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999996542 11111 111111222 7777766666655443
No 24
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.70 E-value=0.21 Score=40.48 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHh-hhccCCchhhhhhhHHHHH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSI-YMLRGPTEARRAIMLPWHV 164 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~-~l~p~~~~~~r~~~~~~H~ 164 (224)
....|-.++.+++++...-...+|+.....+++.-+..|.+++++++++.+ .|+.. +.+.. ....+-+...|-
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~----~Gl~av~~~h~--~~~~~hf~SlHs 79 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISL----VGLVAVFDYHQ--ANGYPDMYSLHS 79 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH----HHHHHHHHHcc--ccCCCccccHHH
Confidence 345899999999997666566666544434455567899999988777654 34433 22222 123356778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc---hhHH--HHHHHHHHHHHHHHHHhh
Q 027354 165 CGGRALLYMAICSALTGLMEAATFLKLHHER---EGRL--LNFTGLSILLFGLFVDLS 217 (224)
Q Consensus 165 ~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~---e~~i--~n~~Gl~~~~~~~~v~~~ 217 (224)
+.|+.++++-......|+..-. +- ..++ +.+. =-+.|+++.+.+++...+
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~f~-~P--~~~~~~r~~~~p~H~~~G~~~f~la~~t~~l 134 (143)
T cd08763 80 WCGILTFVLYFLQWLIGFSFFL-FP--GASFTLRSQYKPLHEFFGRALFLSSVGTSLL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cC--CCchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986531 11 1121 2222 127887777666655443
No 25
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.88 E-value=0.84 Score=39.42 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHh-hhccCCchhhhhhhHHHHH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSI-YMLRGPTEARRAIMLPWHV 164 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~-~l~p~~~~~~r~~~~~~H~ 164 (224)
....|-.++.+++++...=...+|+.-...+|..-+..|..+..+++++.+. |+.. |-.....+...+-+...|-
T Consensus 23 ~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~iv----Gl~avf~~hn~~~~~~~hfySlHS 98 (214)
T cd08764 23 QFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVI----GLKAVFDSHNLAKPPIPNMYSLHS 98 (214)
T ss_pred eEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccCCCCcccchHH
Confidence 3468999999999764433334444322223334567999999887776544 3322 2222222122345677999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc---hhH--HHHHHHHHHHHHHHHHHhh
Q 027354 165 CGGRALLYMAICSALTGLMEAATFLKLHHER---EGR--LLNFTGLSILLFGLFVDLS 217 (224)
Q Consensus 165 ~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~---e~~--i~n~~Gl~~~~~~~~v~~~ 217 (224)
+.|+.++++-......|+..- +. ...++ ..+ .=-+.|+++.+.+++...+
T Consensus 99 wlGl~t~~L~~lQ~~~Gf~~f--l~-P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~l 153 (214)
T cd08764 99 WLGLTAVILFSLQWVGGFVSF--LF-PGLPETLRAAYLPLHVFFGLFIFVLAVATALL 153 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--Hh-cccchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998642 12 11121 111 1127777766666555443
No 26
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=92.32 E-value=1.6 Score=35.30 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVC 165 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~ 165 (224)
....|-.++.+++++...-...+|+.- ...++.-+..|.++=.+++++.+ .|+..-+... .....+.+..+|-+
T Consensus 7 ~Fn~HP~lM~~gfi~l~~eAiL~~r~~-~~~k~~~k~iH~~l~~la~~~~v----vGl~avf~~~-~~~~~~~~~SlHSw 80 (144)
T cd08766 7 IFNVHPVLMVIGFIFLAGEAILAYKTV-PGSREVQKAVHLTLHLVALVLGI----VGIYAAFKFH-NEVGIPNLYSLHSW 80 (144)
T ss_pred eeeccHHHHHHHHHHHHHHHHHHhhcc-ccccchhHHHHHHHHHHHHHHHH----HHHHHHHHHh-cccCccccccHHHH
Confidence 446799999999876554445555532 22334446789988876666544 3443322211 11223456779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCc---hhHHHH--HHHHHHHHHHHHHHhh
Q 027354 166 GGRALLYMAICSALTGLMEAATFLKLHHER---EGRLLN--FTGLSILLFGLFVDLS 217 (224)
Q Consensus 166 ~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~---e~~i~n--~~Gl~~~~~~~~v~~~ 217 (224)
.|+.++++-......|+..- +. ...++ +.+.-. +.|.++.+.+++...+
T Consensus 81 lGl~t~~L~~lQ~~~G~~~f--~~-P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~l 134 (144)
T cd08766 81 LGIGTISLFGLQWLFGFVTF--WF-PGASRNTRAALLPWHVFLGLAIYYLAIATAET 134 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHH--Hc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998653 11 11121 111111 7887777776665443
No 27
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=91.73 E-value=5.7 Score=32.00 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC--cccchhhHHHHHHHHHHHHhhhhHhhhccCC------------
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDM--YSLHSWIGMGTFCLFGLQWLFGFSIYMLRGP------------ 151 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf--~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~------------ 151 (224)
.+..||..-..-+.+...|+..-...+........ ..+|-++|++...+.+.=..... ....|..
T Consensus 6 ~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 84 (182)
T PF01292_consen 6 TRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRW-RRLFPWSDDVFFQVKNYLY 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHH-HhhcccchhhHHHHHHHHH
Confidence 34689988877777888888775554443322222 67899999887776655544440 0011100
Q ss_pred -----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCch---hHHHH-HHHHHHHHHHHHHHhh
Q 027354 152 -----TEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATFLKL-----HHERE---GRLLN-FTGLSILLFGLFVDLS 217 (224)
Q Consensus 152 -----~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~-----~~~~e---~~i~n-~~Gl~~~~~~~~v~~~ 217 (224)
+.....+..+.-+..-.+.+++..+..++|+.......+. ..++. ..... ..+..++.+.++.+++
T Consensus 85 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~ 164 (182)
T PF01292_consen 85 FLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYA 164 (182)
T ss_pred HHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112233344455666666777777776553210000 01111 12222 7777777888887777
Q ss_pred eeccc
Q 027354 218 VALAR 222 (224)
Q Consensus 218 ~~~~~ 222 (224)
++...
T Consensus 165 a~~~~ 169 (182)
T PF01292_consen 165 ALFHH 169 (182)
T ss_pred HHHHh
Confidence 76553
No 28
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=91.72 E-value=0.12 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCcccchhhHHHHHHHHHHHHhhhhHhhhc
Q 027354 119 DMYSLHSWIGMGTFCLFGLQWLFGFSIYML 148 (224)
Q Consensus 119 hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~ 148 (224)
-+..+|.|+|+++-.++.+-.+.|.+..+.
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345678888888887777777777766543
No 29
>PLN02680 carbon-monoxide oxygenase
Probab=90.46 E-value=2.5 Score=36.93 Aligned_cols=127 Identities=17% Similarity=0.108 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHH
Q 027354 83 RIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPW 162 (224)
Q Consensus 83 ~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~ 162 (224)
+......|=.++.+++++...-...+|+.. ...|+.-+..|..+=.+++++. +.|+..-+... ..+..+-+..+
T Consensus 43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~-~~~k~~~K~iH~~L~~lA~~l~----vvGl~avfk~h-n~~~~~nfySl 116 (232)
T PLN02680 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTV-PGTKNLKKLVHLTLQFLAFCLS----LIGVWAALKFH-NEKGIDNFYSL 116 (232)
T ss_pred CcceEechHHHHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHHHHHHHH----HHHHHHHHHhc-cccCccccccH
Confidence 333446899999999998444334445432 2234445788988887766665 34444322211 22234567789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhHHHH--HHHHHHHHHHHHHHh
Q 027354 163 HVCGGRALLYMAICSALTGLMEAATFLKL-HHEREGRLLN--FTGLSILLFGLFVDL 216 (224)
Q Consensus 163 H~~~G~~~~~l~~~t~~lGl~~~~~f~~~-~~~~e~~i~n--~~Gl~~~~~~~~v~~ 216 (224)
|-|.|+.++++-......|+..- .+-+. ...+..+.-. +.|+.+.+.+++...
T Consensus 117 HSWlGl~t~iL~~lQ~~~Gf~~f-~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~ 172 (232)
T PLN02680 117 HSWLGLACLFLFSLQWAAGFVTF-WYPGGSRNSRASLLPWHVFFGIYIYALAVATAT 172 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999763 12111 0111222222 778776666655443
No 30
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=89.38 E-value=0.89 Score=27.54 Aligned_cols=29 Identities=24% Similarity=0.148 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 156 RAIMLPWHVCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 156 r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 184 (224)
|+..+.+|++.|+.+.+....-+++|..-
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l 30 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALL 30 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999764
No 31
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=88.22 E-value=0.93 Score=28.13 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 156 RAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 156 r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
|+.+...|++.|+.+-++-.+-+++|-...
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~~ 30 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVMV 30 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 467789999999999999999999997643
No 32
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=88.14 E-value=4.7 Score=33.05 Aligned_cols=135 Identities=15% Similarity=0.092 Sum_probs=82.6
Q ss_pred ccccccccccchhhHHHHHHHHHHH-HHHHHHHHHHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheeccc-
Q 027354 3 YSIDRVSYRRSASRLTIGAHLFGIL-AIILLLVWLLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVF- 80 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~i~-~~~lv~~W~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~- 80 (224)
++-|+..-..+.-|+.+..-...+. ..++ .||.-..+.. ++...-..|-.++.+++++...--..+++.-.
T Consensus 3 ~~w~~~~~~Fn~HPlLm~~Gfi~l~geAiL------~yr~~~~~~~-~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~ 75 (153)
T cd08765 3 LGWDGGAAEFNWHPVLMVIGFIFIQGIAII------VYRLPWTWKC-SKLLMKLIHAGLHILAFILAIISVVAVFVFHNA 75 (153)
T ss_pred CCCCCCCCeeechHHHHHHHHHHHHHHHHH------Hhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4556444456678888877643333 3322 3442111211 23455689999999998665443333454422
Q ss_pred ccchhHHHHHHHHHHHHHHH----HHHHHHHHhhhhh-ccCCCCCcccchhhHHHHHHHHHHHHhhhhH
Q 027354 81 ASRIVQKTVHMLLHLTAFCL----GVVGLCAVFKYHD-MAGLTDMYSLHSWIGMGTFCLFGLQWLFGFS 144 (224)
Q Consensus 81 ~~~~~~k~iH~~l~~la~~~----~~iG~~ai~~~k~-~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~ 144 (224)
.+++...-.|..+.+..+++ .+.|+..-+.-.. ....+..+-+|-+.|+.+.++.......|+.
T Consensus 76 ~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ 144 (153)
T cd08765 76 KNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGIT 144 (153)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24556777899998887654 4566655422221 1112345779999999999999999999984
No 33
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=87.42 E-value=6 Score=33.28 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=71.2
Q ss_pred HHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheecccc-cchhHHHHHHHHHHHHHH----HHHHHHHHHhh
Q 027354 36 LLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFA-SRIVQKTVHMLLHLTAFC----LGVVGLCAVFK 110 (224)
Q Consensus 36 ~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~-~~~~~k~iH~~l~~la~~----~~~iG~~ai~~ 110 (224)
+..||....|+. ++......|-.+..+++++-..--..+|+.-.. ..++..-.|.-+.+..++ ..+.|+.. |.
T Consensus 54 iL~Yr~~~~~~~-~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~-f~ 131 (179)
T cd08762 54 ALVYRIPLTWGG-PKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTS-FL 131 (179)
T ss_pred HHhhcccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 345665445532 234457899999999986654433444554432 445566689988877765 44566665 33
Q ss_pred hh--hccCCCCCcccchhhHHHHHHHHHHHHhhhhHh
Q 027354 111 YH--DMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSI 145 (224)
Q Consensus 111 ~k--~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~ 145 (224)
.. .+...+.+.-+|-..|+.+.++...+...|+..
T Consensus 132 ~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 132 LPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred cCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122334567799999999999999999999964
No 34
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=86.49 E-value=6.7 Score=31.35 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhh---HHHHHHHHHHHHhhhhHhh---hccCCchhhhhhh--
Q 027354 88 TVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWI---GMGTFCLFGLQWLFGFSIY---MLRGPTEARRAIM-- 159 (224)
Q Consensus 88 ~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~l---Gl~~~~l~~lQ~~~G~~~~---l~p~~~~~~r~~~-- 159 (224)
.+.+.++.++.++..+|..++-+.+.+ .|-.. +.+...+++...+..-... -+++ +...|..+
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~~~--------~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g-~~~ir~~Y~~ 76 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGRIK--------LHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGG-PGWIRPVYLF 76 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CccHHHHHHH
Confidence 356677777777878888777533222 23322 2222223333333222110 0111 22334433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 160 -LPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 160 -~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
.-.|......+..+...|...|+.++
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~~ 103 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRGR 103 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999876
No 35
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=84.36 E-value=19 Score=28.77 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=42.8
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHhhhhHh---hhcc-----CCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 116 GLTDMYSLHSWIGMGTFCLFGLQWLFGFSI---YMLR-----GPTEARRAIMLPWHVCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 116 ~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~---~l~p-----~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 184 (224)
..+.+.....+.-.........+.+.|+.. ...+ ..+...+.....+|.+.+..+.....+=+..++..
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi~~a~~~ 174 (188)
T PF00033_consen 98 PSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHIYAAIFH 174 (188)
T ss_dssp ---SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666677777777888999999976 1111 11222456778899999998887776666665543
No 36
>PLN02351 cytochromes b561 family protein
Probab=83.82 E-value=30 Score=30.51 Aligned_cols=132 Identities=13% Similarity=-0.003 Sum_probs=83.6
Q ss_pred CcccccchhHHHHHHHHHHHhHHhheecccc--cchhHHHHHHHHHHHHHH----HHHHHHHHHhhhhhc--cCCCCCcc
Q 027354 51 HRVFNVHPFLMFCGFVFLAGQAMMAYKTVFA--SRIVQKTVHMLLHLTAFC----LGVVGLCAVFKYHDM--AGLTDMYS 122 (224)
Q Consensus 51 ~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~--~~~~~k~iH~~l~~la~~----~~~iG~~ai~~~k~~--~~~~hf~S 122 (224)
+.....|-.+..+++++- .-|+.+ +.-.. .+++..-.|..+.+..++ ..+.|+.. |..... ..+..+.-
T Consensus 81 k~~K~lH~~Lh~~Ali~~-vvGl~a-~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~-F~~P~~~~~~Ra~~~P 157 (242)
T PLN02351 81 KTKKSVHLWLQGLALASG-VFGIWT-KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMS-FWHRGEMRTTRTTVLP 157 (242)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHH-HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCchhhHHHHhH
Confidence 347889999999998654 445544 22221 245677789988887765 44556665 333221 12334556
Q ss_pred cchhhHHHHHHHHHHHHhhhhHhhhccCC---chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 123 LHSWIGMGTFCLFGLQWLFGFSIYMLRGP---TEARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 123 ~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~---~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
+|-..|+.+..+.......|+.--..-.. ..+....=...=++.|+.+.+.|..-...-...+
T Consensus 158 ~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~ 223 (242)
T PLN02351 158 WHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVLPK 223 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999965332111 1111112223678899999998877777665543
No 37
>PRK11513 cytochrome b561; Provisional
Probab=82.28 E-value=10 Score=31.45 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchh----hhhhhHH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEA----RRAIMLP 161 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~----~r~~~~~ 161 (224)
.+.+||..-.+-......|.......+ ..++.++++|-.+|+++..+.+.-.+..+. .-.|..+.. .+..-+-
T Consensus 9 ~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~-~~~P~~~~~~~~~~~~~A~~ 85 (176)
T PRK11513 9 QIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLK-YPTPPIVPKPKPMMTGLAHL 85 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCCCHHHHHHHHH
Confidence 567899644332222222322211111 122346789999999999999999988884 222322221 1222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 162 WHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 162 ~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
.| ...|++.++.-++|+...
T Consensus 86 ~H----~~LY~lli~~plsG~~~~ 105 (176)
T PRK11513 86 GH----LVIYLLFIALPVIGLVMM 105 (176)
T ss_pred HH----HHHHHHHHHHHHHHHHHH
Confidence 55 566777777777787643
No 38
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=79.52 E-value=15 Score=31.00 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCch----hhhhhhHH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTE----ARRAIMLP 161 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~----~~r~~~~~ 161 (224)
...+||..-.+-+.....|.......+.+..+-.++.+|-.+|+.+..+.+.-.+-.+.. -.|...+ ..+..-+-
T Consensus 12 ~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~-~~p~~~~~~~~~~~~aA~~ 90 (181)
T COG3038 12 QIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRN-PAPPIVPGPPPWQRKAAKL 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCCChHHHHHHHH
Confidence 457999998888888888888887776655555788999999999999999888776632 2222111 12444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027354 162 WHVCGGRALLYMAICSALTGL 182 (224)
Q Consensus 162 ~H~~~G~~~~~l~~~t~~lGl 182 (224)
.|-. +|++-.+-=++|+
T Consensus 91 ~Hl~----LY~l~lalPlsG~ 107 (181)
T COG3038 91 GHLA----LYLLMLALPLSGY 107 (181)
T ss_pred HHHH----HHHHHHHHHHHHH
Confidence 6643 4444444455553
No 39
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=78.22 E-value=33 Score=27.44 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhc-c------CCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 126 WIGMGTFCLFGLQWLFGFSIYML-R------GPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 126 ~lGl~~~~l~~lQ~~~G~~~~l~-p------~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
....+..++..++.+.|+..+.. + ............+|.+.+....+...+=+...+...
T Consensus 103 ~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a~~~~ 169 (182)
T PF01292_consen 103 IVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYAALFHH 169 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667888888999977542 1 113345667889999999998877776666666554
No 40
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=77.84 E-value=13 Score=27.02 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 159 MLPWHVCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 159 ~~~~H~~~G~~~~~l~~~t~~lGl~~ 184 (224)
...+|+..|....+....-+.+|...
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999888754
No 41
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=77.24 E-value=38 Score=28.85 Aligned_cols=57 Identities=7% Similarity=0.037 Sum_probs=36.6
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027354 116 GLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSA 178 (224)
Q Consensus 116 ~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~ 178 (224)
|.+-.++.--..|..++.++.++...+-+.-..+. .++.++||..|+..+..+..=.
T Consensus 36 g~~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~~------~~l~~~RR~LGl~af~~a~lH~ 92 (205)
T PRK05419 36 GADPVKDIEHFTGLWALVFLLATLAVTPLRRLTGQ------PLLIRTRRLLGLWAFFYATLHL 92 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566788888888777777654322211 2577788888888887766544
No 42
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=75.29 E-value=46 Score=27.57 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-C------CCCCcccchhhHHHHHHHHHHHHhhhhHhh-------hc--c
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMA-G------LTDMYSLHSWIGMGTFCLFGLQWLFGFSIY-------ML--R 149 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~-~------~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~-------l~--p 149 (224)
.+..||..-..-+.+...|+.......... + ......+|-++|++..++.+.=...++..- .. |
T Consensus 7 ~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~~~~~~~~~r~~~~~~ 86 (211)
T TIGR02125 7 VRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAFVGKDSRYERFSFRDP 86 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHhhcCC
Confidence 346788766655566667775532211100 0 112357788888877776665554444220 00 0
Q ss_pred CCchhh-h---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhhcCCchh--H
Q 027354 150 GPTEAR-R---------------AIMLPWHVCGGRALLYMAICSALTGLMEAATF-------------LKLHHEREG--R 198 (224)
Q Consensus 150 ~~~~~~-r---------------~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f-------------~~~~~~~e~--~ 198 (224)
...+.+ + .+..+.-+..-..++++..+..++|+.-.... .....+.++ .
T Consensus 87 ~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~~~lTG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 166 (211)
T TIGR02125 87 LNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILFMILTGLALYYYHNGLGGLLPSLFGWVEPLFGGLANVR 166 (211)
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHhCChHHHH
Confidence 000001 0 01135566667777778888888887543100 000011111 1
Q ss_pred HH-HHHHHHHHHHHHHHHhheecc
Q 027354 199 LL-NFTGLSILLFGLFVDLSVALA 221 (224)
Q Consensus 199 i~-n~~Gl~~~~~~~~v~~~~~~~ 221 (224)
.. ...+..++++.++.+++++.+
T Consensus 167 ~iH~~~a~~l~~~i~~Hi~~a~~h 190 (211)
T TIGR02125 167 FIHHLGMWAFVIFVPVHVYMAVRE 190 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 266777778888888877654
No 43
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=74.54 E-value=42 Score=26.77 Aligned_cols=86 Identities=22% Similarity=0.207 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcc-------------cchhhHHHHHHHHHHHHhhhhHhhhccCC
Q 027354 85 VQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYS-------------LHSWIGMGTFCLFGLQWLFGFSIYMLRGP 151 (224)
Q Consensus 85 ~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S-------------~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~ 151 (224)
.+...|.-.|..|+.++.+=+..=...+...|..+|.. .|..+-.++..+.......|+-
T Consensus 29 ~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~------- 101 (133)
T PF04238_consen 29 GRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALR------- 101 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 35568999999888765544433222333333333332 2444444444444444444431
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 152 TEARRAIMLPWHVCGGRALLYMAICSALTGLM 183 (224)
Q Consensus 152 ~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 183 (224)
.-..-||-.|..++..=..+..+|..
T Consensus 102 ------~~~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 102 ------GRFTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred ------cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12356999999999998889988874
No 44
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=74.26 E-value=15 Score=26.75 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-h-h------hcc--CCCCCcccchhhHHHHHHHHHHHHhhhhH
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFK-Y-H------DMA--GLTDMYSLHSWIGMGTFCLFGLQWLFGFS 144 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~-~-k------~~~--~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~ 144 (224)
.+.+=...-.+.+++.+.|++.-+. . | .++ ++...+.+|..+|+.+....++-.+.|..
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666677788876653 1 1 111 11126779999999999998888888884
No 45
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=71.34 E-value=39 Score=25.06 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHhhhhHh-hhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027354 127 IGMGTFCLFGLQWLFGFSI-YMLRGPTEARRAIMLPWHVCGGRALLYMAICSALT 180 (224)
Q Consensus 127 lGl~~~~l~~lQ~~~G~~~-~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~l 180 (224)
+|.+.+.++..+.+.|.=. .+-+....+ .++...+||+.|+.+++++++=...
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~-~~~~~~~Hr~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGIS-FDRLLRFHRWLGRLAFFLALLHGVL 54 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777788787766100 010111111 2334459999999999988765443
No 46
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=92 Score=28.56 Aligned_cols=85 Identities=19% Similarity=0.047 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHH
Q 027354 88 TVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGG 167 (224)
Q Consensus 88 ~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G 167 (224)
.+|...-...+.....-+ +..-|+.+..++.. +.+.....+..+|...|+.++++.. + -.+-..|....
T Consensus 231 ~~Hr~~a~~~~~~~l~~~--~~~~r~~~~~~~~~----~~~~~l~~lv~~Q~~~Gi~tv~~~v-p----l~~a~~H~~~~ 299 (323)
T COG1612 231 FVHRLGAYLVFVAALLLL--VAALRRAPLTRAAR----TRAVVLLALVTLQAALGILTVLLGV-P----LALALAHQAAA 299 (323)
T ss_pred hhHHHHHHHHHHHHHHHH--HHHHhccccchhHH----HHHHHHHHHHHHHHHHHHHHHHhcc-h----HHHHHHHHHHH
Confidence 455554444333333332 33333333333333 3677888999999999999876532 2 24667899955
Q ss_pred HHHHHHHHHHHHHHHH
Q 027354 168 RALLYMAICSALTGLM 183 (224)
Q Consensus 168 ~~~~~l~~~t~~lGl~ 183 (224)
.+.+.....-+..+..
T Consensus 300 ~~ll~~~~~~a~~~~r 315 (323)
T COG1612 300 LVLLATALLHAWLLAR 315 (323)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5555554444444443
No 47
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=66.08 E-value=57 Score=24.84 Aligned_cols=90 Identities=19% Similarity=0.145 Sum_probs=58.4
Q ss_pred cchhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhH
Q 027354 82 SRIVQKTVHMLLHLTAFC-LGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIML 160 (224)
Q Consensus 82 ~~~~~k~iH~~l~~la~~-~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~ 160 (224)
+++..-..|..++.+++. +.-+|+.. .+-+ .+||--.=.+..++...-+..|.. +.+..++. --.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL--~~~~-------sr~~~~~q~~~~~l~~~g~~~g~~---~~~~~p~l--yp~ 78 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVL--GNAR-------SRWHLPVQTVFLVLMILGLFLGSV---YNGSTPDL--YPN 78 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH--HHcc-------chHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCC--CCC
Confidence 566677899999999975 34455543 3322 236666655555566666666653 22222111 013
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 161 PWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 161 ~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
-.|.-+|.+++++.++..+.|+..|
T Consensus 79 n~H~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 79 NAHGKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998766
No 48
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=65.44 E-value=25 Score=29.60 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 131 TFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 131 ~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
+..++..|.+.|...-..|+.+. .+.....+|+-+|+.+..+.+.=++..+.+.
T Consensus 19 ~allv~~~~~~g~~~~~~~~~~~-~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~ 72 (181)
T COG3038 19 MALLVIGAFALGELMGFLPRGPG-LYFLLYELHKSIGILVLALMVLRLLWRLRNP 72 (181)
T ss_pred HHHHHHHHHHHHHHHHHcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34577788888887777776443 5667889999999999999998888777553
No 49
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=63.96 E-value=8.1 Score=22.43 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=14.8
Q ss_pred cccchhhHHHHHHHHHHHHhhhh
Q 027354 121 YSLHSWIGMGTFCLFGLQWLFGF 143 (224)
Q Consensus 121 ~S~Hs~lGl~~~~l~~lQ~~~G~ 143 (224)
+.+|.|++.++...+.+-.+.|+
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766666666666665
No 50
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=57.72 E-value=91 Score=26.02 Aligned_cols=104 Identities=16% Similarity=0.058 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHH
Q 027354 90 HMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRA 169 (224)
Q Consensus 90 H~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~ 169 (224)
|.+.+....+....|-..... +. .....|-.+|...+.++.+-.+.|...-..... +....-|-+.|..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~l~-~~-----~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~-----~lf~spH~~~Gl~ 123 (175)
T PF13301_consen 55 YSIARAIFLILALTGTRKELV-KL-----KARDRHYRLGFALLAFMGLGALGGQLGTYRQNG-----KLFWSPHLWAGLA 123 (175)
T ss_pred chhhHHHHHHHHHHHHHHHHH-hh-----hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCC-----CCccCchHHHHHH
Confidence 334455555666666555444 21 235679999999999999999999866543321 2445569999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh--cCCchhHHHHHHHHHH
Q 027354 170 LLYMAICSALTGLMEAATFLKL--HHEREGRLLNFTGLSI 207 (224)
Q Consensus 170 ~~~l~~~t~~lGl~~~~~f~~~--~~~~e~~i~n~~Gl~~ 207 (224)
...+-..++.+.-. .+.++ ...+--...|.+.+++
T Consensus 124 ~~~L~~~s~al~~~---i~~g~~~~~R~lHi~lN~~~l~L 160 (175)
T PF13301_consen 124 VVGLMAFSAALVPQ---IQKGNRPWARRLHIYLNSLALLL 160 (175)
T ss_pred HHHHHHHHHHHHHH---HccCCchhHHHHHHHHHHHHHHH
Confidence 98888877765532 12211 1222445666655443
No 51
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=57.46 E-value=1.6e+02 Score=27.07 Aligned_cols=143 Identities=12% Similarity=0.151 Sum_probs=74.7
Q ss_pred CccccCCCCCCcccccchhHHHHHHHHH--HHhHHhheecccccchhHHHHHHHHHHHHHHHHHHHHHHH-hhhhhccCC
Q 027354 41 DGIEYDSDDPHRVFNVHPFLMFCGFVFL--AGQAMMAYKTVFASRIVQKTVHMLLHLTAFCLGVVGLCAV-FKYHDMAGL 117 (224)
Q Consensus 41 ~G~~w~~~~~~~~F~~Hp~lM~lgfv~l--~~eaiL~~r~~~~~~~~~k~iH~~l~~la~~~~~iG~~ai-~~~k~~~~~ 117 (224)
|++-++.+|....+..-|+..++|.+.. +..|.-..|..- ++...-.-..+-.++-..+.+.+.-. +...+....
T Consensus 24 G~fv~~~g~d~~~~vAG~Vv~sL~~ICiALf~TAatIIrQli--~ty~~~~k~~lP~iGY~~a~~T~i~G~~~~~~~~~~ 101 (347)
T PF10951_consen 24 GAFVLDYGTDSNRFVAGPVVFSLGAICIALFTTAATIIRQLI--HTYNTFAKYLLPIIGYLAAAITIIGGIYIFSSGPNA 101 (347)
T ss_pred hHHHcccCCCcCceeecceeehHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 5566665555677788888888887643 333333344321 11111122233444433333332211 113344556
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhhhHhh-hccCCchhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 118 TDMYSLHSWIGMGTFCLFGLQWLFGFSIY-MLRGPTEAR--RAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 118 ~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~-l~p~~~~~~--r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
++|.+=|=..|+..+...+.....--..| +.|..+++. ...-.-+-+.-|..+........+.|.-..
T Consensus 102 ~~fVaGhVi~GvGlItaCVaT~AtSStrF~LIP~Ns~~~~~~~p~~afs~~~~~~Liav~~~~~li~~iw~ 172 (347)
T PF10951_consen 102 AYFVAGHVIFGVGLITACVATVATSSTRFTLIPKNSKGTSHEVPKGAFSRGQGNILIAVPILCALIGWIWA 172 (347)
T ss_pred hhhccCceeechhHHHHHHHHhhhccccEEEeecCCCCCCCCCChhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999998766655554444433333 345543332 122233556667777777777677776554
No 52
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=54.92 E-value=42 Score=25.20 Aligned_cols=27 Identities=26% Similarity=0.173 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 158 IMLPWHVCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 158 ~~~~~H~~~G~~~~~l~~~t~~lGl~~ 184 (224)
+-...||..|++-......++..|+.-
T Consensus 4 k~~~~HR~lGrvyv~~~~~~a~sa~~i 30 (103)
T PF10067_consen 4 KGPRLHRWLGRVYVAAMLISALSALFI 30 (103)
T ss_pred CcccHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666543
No 53
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=50.86 E-value=82 Score=23.36 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHH
Q 027354 96 TAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGL 137 (224)
Q Consensus 96 la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~l 137 (224)
.+++.+..|......-+++.+..+--..|.++|..+..++..
T Consensus 15 ~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 15 GAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444433333333456777777777766665
No 54
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=50.83 E-value=75 Score=21.46 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhhhhHhhhccCCc----hhhhhhhHHHHHHHHHHHHHHHHH
Q 027354 127 IGMGTFCLFGLQWLFGFSIYMLRGPT----EARRAIMLPWHVCGGRALLYMAIC 176 (224)
Q Consensus 127 lGl~~~~l~~lQ~~~G~~~~l~p~~~----~~~r~~~~~~H~~~G~~~~~l~~~ 176 (224)
+-+..++.+....+.|+..+..|... ...|...+..|.+.|...+++...
T Consensus 5 i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 5 INLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888889999876655322 113567789999999998886553
No 55
>PRK03735 cytochrome b6; Provisional
Probab=48.41 E-value=1.8e+02 Score=25.17 Aligned_cols=64 Identities=22% Similarity=0.194 Sum_probs=43.2
Q ss_pred cchhhHHHHHHHHHHHHhhhhHhhhc--cCCchh------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 123 LHSWIGMGTFCLFGLQWLFGFSIYML--RGPTEA------------RRAIMLPWHVCGGRALLYMAICSALTGLMEAA 186 (224)
Q Consensus 123 ~Hs~lGl~~~~l~~lQ~~~G~~~~l~--p~~~~~------------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~ 186 (224)
+==.+|-++...+..|.+.|++..++ |..... ....++..|++..-..+++...=..-|+....
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gs 117 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGG 117 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33467888888888899988865543 332111 12244678888888888888888888877663
No 56
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=47.53 E-value=2e+02 Score=25.42 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=13.1
Q ss_pred cccchhhHHHHHHHHHHHHhhhh
Q 027354 121 YSLHSWIGMGTFCLFGLQWLFGF 143 (224)
Q Consensus 121 ~S~Hs~lGl~~~~l~~lQ~~~G~ 143 (224)
--||-.+|+.+.++...|.+.|+
T Consensus 162 mP~H~~~Gl~~f~lai~ta~~Gl 184 (245)
T KOG1619|consen 162 MPWHVFLGLAIFILAIVTALTGL 184 (245)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555
No 57
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=45.43 E-value=1.9e+02 Score=24.51 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhc--cCCchh------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 126 WIGMGTFCLFGLQWLFGFSIYML--RGPTEA------------RRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 126 ~lGl~~~~l~~lQ~~~G~~~~l~--p~~~~~------------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
.+|-++...+..|.+.|++.-++ |..... ..-.++..|++..-..+++...=..-|+...
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~g 97 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36877888888888888765443 332111 1134456788887777777777776666655
No 58
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=45.38 E-value=89 Score=20.74 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHH
Q 027354 137 LQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATFLKLHHEREGRLLNFTGLSILLFGLFV 214 (224)
Q Consensus 137 lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~e~~i~n~~Gl~~~~~~~~v 214 (224)
+..+.|+.....|. ....-.-...|....+-|......++.+| +..+.....-+.|++.++.|+..
T Consensus 5 l~iv~Gi~~l~~p~------~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~------~~~~~~~~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 5 LFIVLGILLLFNPD------ASLAALAIILGIWLIISGIFQLISAFRRR------KGSKGWWWSLLSGILSIVLGIIL 70 (72)
T ss_pred HHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccchhhHHHHHHHHHHHHHHHHH
Confidence 34566777766665 22333445666666666666665555422 22233334446777777777654
No 59
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=44.96 E-value=2.2e+02 Score=25.09 Aligned_cols=63 Identities=13% Similarity=-0.095 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhhhhcCCchhH----HHHHHHHHHHHHHHHHHhheec
Q 027354 158 IMLPWHVCGGRAL-LYMAICSALTGLME-AATFLKLHHEREGR----LLNFTGLSILLFGLFVDLSVAL 220 (224)
Q Consensus 158 ~~~~~H~~~G~~~-~~l~~~t~~lGl~~-~~~f~~~~~~~e~~----i~n~~Gl~~~~~~~~v~~~~~~ 220 (224)
+..|..+..-..+ +.++.+.+.+|+.- ...+.....+.... +=.++..+++++.++.+|+++.
T Consensus 175 k~Npgqkl~y~~v~~~~~~~livTGl~l~~p~~~~~~~~g~~~~~~~iH~~~a~lli~fiivHIYl~~~ 243 (261)
T PRK15006 175 KFNPLQQLAYLGVMYGLVPLLLLTGLLCLYPQAVGDVFPGVRYWLLQLHFALAFISLFFIFGHLYLCTT 243 (261)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555543 34555778888763 22222111122121 2227888888899999998654
No 60
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=44.33 E-value=38 Score=23.37 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-------cCCchhHHHHHHHHHHHHHHHH
Q 027354 164 VCGGRALLYMAICSALTGLMEAATFLKL-------HHEREGRLLNFTGLSILLFGLF 213 (224)
Q Consensus 164 ~~~G~~~~~l~~~t~~lGl~~~~~f~~~-------~~~~e~~i~n~~Gl~~~~~~~~ 213 (224)
|..|+++.+.|.+=...|++......++ +.+++.+.--..|.+..+-|+.
T Consensus 1 kiigi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred CeeeehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence 3568889999999999999876543321 5666777777777777666654
No 61
>COG2322 Predicted membrane protein [Function unknown]
Probab=43.97 E-value=1.9e+02 Score=24.21 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 160 LPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 160 ~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
...|.....+...++..+..+|...+
T Consensus 119 L~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 119 LITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 45799999999999999999998765
No 62
>PLN02631 ferric-chelate reductase
Probab=43.21 E-value=1.5e+02 Score=30.11 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 027354 157 AIMLPWHVCGGRALLYMAICSALT 180 (224)
Q Consensus 157 ~~~~~~H~~~G~~~~~l~~~t~~l 180 (224)
.+...+||+.|+.+++++++=...
T Consensus 186 e~~i~yHRWlGri~~~la~iH~i~ 209 (699)
T PLN02631 186 ESSIKYHIWLGHVSNFLFLVHTVV 209 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999988765443
No 63
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=42.68 E-value=2.7e+02 Score=25.56 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhH
Q 027354 87 KTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFS 144 (224)
Q Consensus 87 k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~ 144 (224)
|+--...|.++..+.++|+..+.......+.++-.+-|.++|=... ...+.+-|+-
T Consensus 128 ~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~--l~~a~lya~~ 183 (334)
T PF06027_consen 128 KRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA--LLGAILYAVS 183 (334)
T ss_pred HhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH--HHHHHHHHHH
Confidence 3334456888988889998877665444443444566889996433 4444555553
No 64
>PF13630 SdpI: SdpI/YhfL protein family
Probab=39.79 E-value=1.2e+02 Score=20.72 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 156 RAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 156 r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
....+..||+.|...+..|++....|+.-.
T Consensus 20 ~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~ 49 (76)
T PF13630_consen 20 DENWKKAHRFAGKIFIIGGIVLLIIGIIIL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999998888654
No 65
>PRK10263 DNA translocase FtsK; Provisional
Probab=38.18 E-value=2.7e+02 Score=30.57 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhhhhccCCCCCc------ccchhhHHHHHH-HHHHHHhhhhHhhhccC
Q 027354 90 HMLLHLTAFCLGVVGLCAV--FKYHDMAGLTDMY------SLHSWIGMGTFC-LFGLQWLFGFSIYMLRG 150 (224)
Q Consensus 90 H~~l~~la~~~~~iG~~ai--~~~k~~~~~~hf~------S~Hs~lGl~~~~-l~~lQ~~~G~~~~l~p~ 150 (224)
|...++.++++.+++++.. +.+.+..+ |.|. ..|.+.|.+.-. --++-.++|+.+|++|.
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsD-PSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~ 88 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSD-PSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV 88 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccC-CcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666666666665432 22222221 2332 257777765443 22333478888887763
No 66
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=37.03 E-value=49 Score=26.00 Aligned_cols=32 Identities=6% Similarity=0.208 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 027354 84 IVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMA 115 (224)
Q Consensus 84 ~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~ 115 (224)
++.+.+|++.+.+..++.+++++..+..-.++
T Consensus 25 ~r~riinliiG~vT~l~VLvtii~afvf~~~~ 56 (118)
T PF10856_consen 25 ARDRIINLIIGAVTSLFVLVTIISAFVFPQDP 56 (118)
T ss_pred cccEEEEeehHHHHHHHHHHHHhheEEecCCC
Confidence 33446777777777777777776655544433
No 67
>PRK13673 hypothetical protein; Provisional
Probab=36.93 E-value=2.1e+02 Score=22.50 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHH
Q 027354 84 IVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWH 163 (224)
Q Consensus 84 ~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H 163 (224)
+..|..|+.+-..=++..+.|++...+.- .+.+-++..=..+|+.++.+ .|..++ .|++=++-|
T Consensus 28 ~~~ki~hMilRLfyil~iiTG~~l~~~~~--~~~~~l~~~K~l~gi~vIg~--mEm~l~------------r~kk~k~~~ 91 (118)
T PRK13673 28 KKAKILHMILRLFYILIIITGFWLLIRSF--GSNHMLYILKMLLGIIVIGL--MEMSLA------------KRKKGKPTG 91 (118)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHH--HHHHHH------------HHHcCCCcc
Confidence 33557899988888888888877655432 11122234445555433322 232211 112224555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027354 164 VCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 164 ~~~G~~~~~l~~~t~~lGl~~ 184 (224)
.+.+..+.++ +.+..+|+.-
T Consensus 92 ~~~~~~ii~l-vlti~lG~~L 111 (118)
T PRK13673 92 GFWWIFIIVL-VLTILLGLIL 111 (118)
T ss_pred cHHHHHHHHH-HHHHHHHHHh
Confidence 5655555443 5666777643
No 68
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=35.40 E-value=2.1e+02 Score=22.16 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027354 89 VHMLLHLTAFCLGVVGLC 106 (224)
Q Consensus 89 iH~~l~~la~~~~~iG~~ 106 (224)
.=.++..+|.++.++++.
T Consensus 103 ~~~~~~~~ag~~~l~~l~ 120 (172)
T PF13903_consen 103 FAGILFILAGLCILIALI 120 (172)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333566677777777665
No 69
>CHL00070 petB cytochrome b6
Probab=33.28 E-value=3.2e+02 Score=23.56 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhc--cCCchh------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 125 SWIGMGTFCLFGLQWLFGFSIYML--RGPTEA------------RRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 125 s~lGl~~~~l~~lQ~~~G~~~~l~--p~~~~~------------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
=.+|-++...+..|.+.|++-.++ |..... ..-.++..|++..-..+++...=..-|+...
T Consensus 34 ~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~g 108 (215)
T CHL00070 34 YCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTG 108 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357877888888888888765443 332111 1223466788888888888777777777666
No 70
>PLN02810 carbon-monoxide oxygenase
Probab=32.08 E-value=3.5e+02 Score=23.72 Aligned_cols=134 Identities=12% Similarity=0.006 Sum_probs=84.3
Q ss_pred CcccccchhHHHHHHHHHHHhHH-hheecccc-cchhHHHHHHHHHHHHHH----HHHHHHHHHhhhh-hccCCCCCccc
Q 027354 51 HRVFNVHPFLMFCGFVFLAGQAM-MAYKTVFA-SRIVQKTVHMLLHLTAFC----LGVVGLCAVFKYH-DMAGLTDMYSL 123 (224)
Q Consensus 51 ~~~F~~Hp~lM~lgfv~l~~eai-L~~r~~~~-~~~~~k~iH~~l~~la~~----~~~iG~~ai~~~k-~~~~~~hf~S~ 123 (224)
...-..|..+..+++++- .-|+ -+|+.-.. ..++..-+|--+.+..++ ..+.|+..-+.-+ .++-++.+--|
T Consensus 77 ~~~K~iH~~lh~~Al~l~-vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~ 155 (231)
T PLN02810 77 EVKKLIHLVLHAIALILG-IFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPW 155 (231)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHH
Confidence 345689999999998554 3344 33544322 455566789888777655 4456664422222 22223445579
Q ss_pred chhhHHHHHHHHHHHHhhhhHhhhccCCc--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 124 HSWIGMGTFCLFGLQWLFGFSIYMLRGPT--EARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 124 Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~--~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
|-..|+.+.++...+...|+.--+.-... .+..+.=-..=++.|+.+.+.|..-...-..+.
T Consensus 156 Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~ 219 (231)
T PLN02810 156 HVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVLTALAQS 219 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999653321111 111112223678899999998888777665543
No 71
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=30.64 E-value=71 Score=25.10 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=43.5
Q ss_pred ccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 122 SLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAA 186 (224)
Q Consensus 122 S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~ 186 (224)
=.|=.+|.+|.++.....+.++ .+|..+ -+|.|.+++..+.+..+.++++=.+...
T Consensus 29 iinliiG~vT~l~VLvtii~af---vf~~~~------p~p~~iffavcI~l~~~s~~lLI~WYR~ 84 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAF---VFPQDP------PKPLHIFFAVCILLICISAILLIFWYRQ 84 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheE---EecCCC------CCceEEehHHHHHHHHHHHHhheeehhc
Confidence 4577899999999888888777 455422 3578999999999998888888776653
No 72
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=30.42 E-value=3.8e+02 Score=23.64 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHH
Q 027354 84 IVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWH 163 (224)
Q Consensus 84 ~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H 163 (224)
......|..+-.+..++.++-+...+..++.++. =-+......++...|...|.......- ..+...-.|
T Consensus 65 ~~~E~~HR~~~~~~gl~~l~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~Q~~lG~~~V~~~l----~~~~~~~~H 134 (302)
T PF02628_consen 65 TWIEWGHRLLAGLVGLLILALAVWAWRKRRIRRR------LRWLALLALVLVILQGLLGAWTVLSGL----VSPYVVTLH 134 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc------hHHHHHHHHHHHHHHHHHHHHHHHhcc----cchHHHHHH
Confidence 3456788888777666666666666654433221 124666778899999999997655431 123446789
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027354 164 VCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 164 ~~~G~~~~~l~~~t~~lGl~~ 184 (224)
-..+..++.+...+...-...
T Consensus 135 l~~a~~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 135 LLLALLIFALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 999999988777666654443
No 73
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=30.24 E-value=4.3e+02 Score=24.11 Aligned_cols=100 Identities=13% Similarity=-0.063 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchh------h
Q 027354 82 SRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEA------R 155 (224)
Q Consensus 82 ~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~------~ 155 (224)
+++..++.+.-+.-+..++...-+...+.++.+.+ ..-..+|-++++...+-...=....+.|..+.. .
T Consensus 118 ~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~-----~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~ 192 (340)
T PF12794_consen 118 PKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDG-----LARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSW 192 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-----hhhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcch
Confidence 56666666666666666666666666666544332 224557755554333221110111222322211 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 156 RAIMLPWHVCGGRALLYMAICSALTGLMEAA 186 (224)
Q Consensus 156 r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~ 186 (224)
+....+.=...-...-+..++-+..|++..+
T Consensus 193 ~~~~~~l~~~~li~~Pl~li~la~~GY~yTA 223 (340)
T PF12794_consen 193 IHRLRYLWWPLLILAPLALIVLALLGYYYTA 223 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2334444444555555677788889988765
No 74
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=29.65 E-value=3.9e+02 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHhhhhHhhh
Q 027354 127 IGMGTFCLFGLQWLFGFSIYM 147 (224)
Q Consensus 127 lGl~~~~l~~lQ~~~G~~~~l 147 (224)
.+.....+..+|.+.|+...+
T Consensus 259 ~~~~~~~ll~~Qv~lGi~~v~ 279 (302)
T PF02628_consen 259 LAVLLLALLLLQVLLGILTVL 279 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555544433
No 75
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=29.61 E-value=3.1e+02 Score=22.28 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHHHHH--HHHHHHhhhhHhhhccCCchh--hhhhhH
Q 027354 85 VQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMGTFC--LFGLQWLFGFSIYMLRGPTEA--RRAIML 160 (224)
Q Consensus 85 ~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~~~~--l~~lQ~~~G~~~~l~p~~~~~--~r~~~~ 160 (224)
..+.+=|..|-+--+....-+..++.. +....|.+.+ ==..|+++++ .++.|+..|.-.. -.+.++. .|-+-.
T Consensus 57 ~E~~~GW~~HY~iGi~fa~~~~~l~g~-~wl~~Pt~~~-ali~G~~tvl~p~~imqP~lG~G~a-as~tP~p~~~r~~sl 133 (150)
T PF11158_consen 57 GERILGWLAHYAIGIAFAVLYALLWGP-GWLSRPTLLP-ALIFGLVTVLAPFFIMQPALGAGIA-ASKTPNPWKARLRSL 133 (150)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCCchHH-HHHHHHHHHHHHHHHHHHHHhcchh-hccCCCchHHHHHHH
Confidence 344555666655444333333333322 2223344432 1236777765 8899999998432 2333333 344445
Q ss_pred HHHHHHHHHHHHHHH
Q 027354 161 PWHVCGGRALLYMAI 175 (224)
Q Consensus 161 ~~H~~~G~~~~~l~~ 175 (224)
--|..+|..+++.+.
T Consensus 134 ~aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 134 IAHLVFGLGLYLSAL 148 (150)
T ss_pred HHHHHHHHHHHHHhh
Confidence 689999999998664
No 76
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=29.42 E-value=2.6e+02 Score=28.58 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 027354 157 AIMLPWHVCGGRALLYMAICSALT 180 (224)
Q Consensus 157 ~~~~~~H~~~G~~~~~l~~~t~~l 180 (224)
.+..++||+.|+.+++++++=...
T Consensus 189 e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 189 EASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999988876553
No 77
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=28.06 E-value=2.9e+02 Score=27.03 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcccccchhHHHHHHHHHHHhHHhheecccccchhHHHHHHHH
Q 027354 14 ASRLTIGAHLFGILAIILLLVWLLHYRDGIEYDSDDPHRVFNVHPFLMFCGFVFLAGQAMMAYKTVFASRIVQKTVHMLL 93 (224)
Q Consensus 14 ~~~~~~~~~~l~i~~~~lv~~W~~~~~~G~~w~~~~~~~~F~~Hp~lM~lgfv~l~~eaiL~~r~~~~~~~~~k~iH~~l 93 (224)
.+|...+.|++++..+..++. +-|-+ ||--++=++ |-++...+++-|-.+......+|+.-.+.
T Consensus 540 ~~~w~a~~~Lia~~L~L~iGl--------iPWiD-------N~aHlfG~i-~GLl~s~~~~PYi~Fg~~d~yrKr~~ilI 603 (652)
T KOG2290|consen 540 ERPWRAFFHLIATLLVLCIGL--------IPWID-------NWAHLFGTI-FGLLTSIIFLPYIDFGDFDLYRKRFYILI 603 (652)
T ss_pred hhHHHHHHHHHHHHHHHHhcc--------ccchh-------hHHHHHHHH-HHHHHHHHhhccccccchhhhhhHHHHHH
Confidence 346666666666655544433 44532 333333333 22344444444544443344556666666
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027354 94 HLTAFCLGVVGLCAVFKY 111 (224)
Q Consensus 94 ~~la~~~~~iG~~ai~~~ 111 (224)
-.+.+...+.+++++|+|
T Consensus 604 s~ivf~~Lla~Lvv~fy~ 621 (652)
T KOG2290|consen 604 SQIVFSGLLAILVVVFYN 621 (652)
T ss_pred HHHHHHHHHHHHHHheee
Confidence 666666666777777664
No 78
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=27.87 E-value=3.6e+02 Score=22.47 Aligned_cols=142 Identities=11% Similarity=-0.015 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----ccCCCCCcccchhhHHHHHHHHHHHHhhhhHh------------
Q 027354 83 RIVQKTVHMLLHLTAFCLGVVGLCAVFKYHD-----MAGLTDMYSLHSWIGMGTFCLFGLQWLFGFSI------------ 145 (224)
Q Consensus 83 ~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~-----~~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~------------ 145 (224)
....+..||+.-..-+.+...|+...+.... ..+.+....+|-+.|.+.+...+.-.+.=.-.
T Consensus 6 ~~~~r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~i~~~~~~~~~~~~~~~d~~~~~ 85 (204)
T TIGR01583 6 SLFDRILHWIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPMFLKWWRRMIPAKYDIRWMM 85 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q ss_pred -----hhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHH------HHHHHHHHHHHHH
Q 027354 146 -----YMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATFLKLHHEREGRLLN------FTGLSILLFGLFV 214 (224)
Q Consensus 146 -----~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~e~~i~n------~~Gl~~~~~~~~v 214 (224)
+.....+.....++.+..+..-..+++++.+.+++|+.--........-+++...- ..+.+++++.++.
T Consensus 86 ~~~~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~~~~~~~~~~~~~~~~~~~~~H~~~a~l~~~~vi~H 165 (204)
T TIGR01583 86 KVGGYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITGIFMWFLDFPSTAFSIELLRISALIHNFSAIILAVGFIVH 165 (204)
T ss_pred HhchHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhheecccCC
Q 027354 215 DLSVALARYV 224 (224)
Q Consensus 215 ~~~~~~~~~~ 224 (224)
+|+++.++..
T Consensus 166 iy~a~~~~~~ 175 (204)
T TIGR01583 166 IYMAVFGVKG 175 (204)
T ss_pred HHHHHhcCcc
No 79
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=27.02 E-value=3.9e+02 Score=22.66 Aligned_cols=63 Identities=10% Similarity=-0.016 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh-H----HHHHHHHHHHHHHHHHHhheec
Q 027354 158 IMLPWHVCGGRALLYMAICSALTGLMEAATFLKLHHEREG-R----LLNFTGLSILLFGLFVDLSVAL 220 (224)
Q Consensus 158 ~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~e~-~----i~n~~Gl~~~~~~~~v~~~~~~ 220 (224)
++.+..+.....+++++..-+++|+---.-......|.+. . +=+..++++++|.++.+|++..
T Consensus 108 k~N~~QKl~y~~i~~~~~~~i~TGl~l~~~~~~~~~~~~~~r~a~~iH~~~a~l~~~fiivHiY~a~~ 175 (217)
T PRK10179 108 KYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175 (217)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888888888888888899997642111222334322 2 2237788888888888888654
No 80
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=27.02 E-value=93 Score=19.20 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhee
Q 027354 197 GRLLNFTGLSILLFGLFVDLSVA 219 (224)
Q Consensus 197 ~~i~n~~Gl~~~~~~~~v~~~~~ 219 (224)
..++|++|+. ++.++|+|-.+
T Consensus 8 ~~lan~lG~~--~~~LIVlYH~v 28 (35)
T PF10215_consen 8 YTLANFLGVA--AMVLIVLYHFV 28 (35)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHh
Confidence 4588999966 66666766554
No 81
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=24.11 E-value=5.5e+02 Score=23.33 Aligned_cols=62 Identities=23% Similarity=0.168 Sum_probs=38.9
Q ss_pred cccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 121 YSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 121 ~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
-|+-++++-++.+... ...|. .|+.-+.+.+.+++.++.-+..+....++..+.......++
T Consensus 156 l~pf~ll~Gl~~v~~~--~~~GA-~~l~~kt~g~l~~rar~~a~~~~~~~~~~~~~~~~~~~~~~ 217 (328)
T PF02322_consen 156 LSPFSLLGGLAVVALF--ALHGA-VFLALKTEGELRERARRWALRLGLAALVLFLAFALWTPFEA 217 (328)
T ss_pred ccHHHHHHHHHHHHHH--HHHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3556666554444333 34455 45555556677888888888888888777776665555543
No 82
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=23.94 E-value=3.5e+02 Score=21.06 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 132 FCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGL 182 (224)
Q Consensus 132 ~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 182 (224)
.++-+-..++|++........+..++..+-...+.|+..+.+-+++...+.
T Consensus 34 ~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 34 FILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHHhh
Confidence 344444456666655554433445666667788888888887776666665
No 83
>COG4267 Predicted membrane protein [Function unknown]
Probab=23.87 E-value=6.6e+02 Score=24.15 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKY 111 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~ 111 (224)
.-..|+..-.+++...++|...-+.|
T Consensus 101 lpsy~Gvi~lv~~~a~~ig~~vf~~~ 126 (467)
T COG4267 101 LPSYIGVILLVTLVAGVIGLIVFFVN 126 (467)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34568888888888999997443443
No 84
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=22.04 E-value=4.8e+02 Score=21.89 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=41.3
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhhhHhhhccC----CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 118 TDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRG----PTEARRAIMLPWHVCGGRALLYMAICSALTGLM 183 (224)
Q Consensus 118 ~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~----~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~ 183 (224)
..++...-..-....+...++.+.|+..+ +|. .+.........+|......+.+..++=+.+.+.
T Consensus 105 ~kyN~~qk~~y~~~~~~~~~~~iTGl~l~-~p~~~~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy~a~~ 173 (211)
T PRK10639 105 GRYNFGQKCVFWAAIIFLVLLLVSGVIIW-RPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALW 173 (211)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555556666778899999754 332 122234566789999888887776665555543
No 85
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=21.47 E-value=3.6e+02 Score=20.71 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=30.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccchhhHHH
Q 027354 82 SRIVQKTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLTDMYSLHSWIGMG 130 (224)
Q Consensus 82 ~~~~~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~hf~S~Hs~lGl~ 130 (224)
+.+..|..|+.+=..=.+..+.|+....++- ++.|=++..=..+|+.
T Consensus 28 ~~k~~k~~~MilRl~YlliiisG~~L~~~~~--~~~~~l~~iK~l~gl~ 74 (110)
T PF07457_consen 28 KTKKAKILHMILRLFYLLIIISGVWLFIRTF--AGNPMLYIIKMLLGLI 74 (110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHH
Confidence 4456778999999988888889998877641 2223334444444443
Done!