Query 027354
Match_columns 224
No_of_seqs 136 out of 511
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kqf_C FDH-N gamma, formate de 64.3 24 0.00081 28.4 7.6 132 86-219 14-174 (217)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 49.9 20 0.00069 29.3 4.8 58 87-144 19-83 (235)
3 1rkl_A Dolichyl-diphosphooligo 32.5 43 0.0015 20.0 2.9 23 196-220 7-29 (36)
4 2lat_A Dolichyl-diphosphooligo 27.6 56 0.0019 19.6 2.9 21 197-219 8-28 (37)
5 2hac_A T-cell surface glycopro 20.0 64 0.0022 18.8 2.0 25 199-223 4-28 (33)
6 2qjy_A Cytochrome B; cytochrom 12.7 2.1E+02 0.0071 26.2 4.5 73 122-204 95-167 (445)
7 1vf5_A Cytochrome B6; photosyn 12.4 5.8E+02 0.02 20.8 10.0 59 127-185 36-108 (215)
8 4gd3_A NI/Fe-hydrogenase 1 B-t 10.8 6.1E+02 0.021 20.1 14.6 56 130-185 135-206 (235)
9 2lom_A HIG1 domain family memb 13.5 60 0.0021 23.3 0.0 53 52-107 22-81 (93)
10 1fft_C Ubiquinol oxidase; elec 8.2 7.6E+02 0.026 19.4 10.2 23 120-142 145-167 (204)
No 1
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=64.29 E-value=24 Score=28.35 Aligned_cols=132 Identities=11% Similarity=0.097 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh----hcc-CCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchh------
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYH----DMA-GLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEA------ 154 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k----~~~-~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~------ 154 (224)
.+..||..-.+-+.+.+.|+...+... +.. +......+|-++|++.+.+++.-.+ .......|. +.+
T Consensus 14 ~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~-~~~~~~~~~ 91 (217)
T 1kqf_C 14 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFV-RFVHHNIPD-KKDIPWLLN 91 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCC-GGGHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCC-hhHHHHHHH
Confidence 457899877766677777876542110 000 1112467999999988877765322 222222333 111
Q ss_pred -------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCch--h--H-HHHHHHHHHHHHHHHHHh
Q 027354 155 -------------RRAIMLPWHVCGGRALLYMAICSALTGLMEAATFLKLHHERE--G--R-LLNFTGLSILLFGLFVDL 216 (224)
Q Consensus 155 -------------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~e--~--~-i~n~~Gl~~~~~~~~v~~ 216 (224)
......|..+..=..++++..+..++|+.-....+....+.+ . . +=..++.+++++.++.++
T Consensus 92 ~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~~~~~~~~~~~~~~~~~~~~~iH~~~a~~l~~~v~~Hv~ 171 (217)
T 1kqf_C 92 IVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMY 171 (217)
T ss_dssp HHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234566666677778888888888753210011112211 1 1 111556666666666666
Q ss_pred hee
Q 027354 217 SVA 219 (224)
Q Consensus 217 ~~~ 219 (224)
+++
T Consensus 172 ~al 174 (217)
T 1kqf_C 172 MAF 174 (217)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=49.95 E-value=20 Score=29.33 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--C-----CcccchhhHHHHHHHHHHHHhhhhH
Q 027354 87 KTVHMLLHLTAFCLGVVGLCAVFKYHDMAGLT--D-----MYSLHSWIGMGTFCLFGLQWLFGFS 144 (224)
Q Consensus 87 k~iH~~l~~la~~~~~iG~~ai~~~k~~~~~~--h-----f~S~Hs~lGl~~~~l~~lQ~~~G~~ 144 (224)
+..||..=.+-+.+...|...........+.+ + ...+|-++|++.+++.+.-.+-++.
T Consensus 19 R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 19 RIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899876666667777776543221101111 1 1258999999999999888777774
No 3
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=32.46 E-value=43 Score=19.98 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheec
Q 027354 196 EGRLLNFTGLSILLFGLFVDLSVAL 220 (224)
Q Consensus 196 e~~i~n~~Gl~~~~~~~~v~~~~~~ 220 (224)
=..++|++|+. ++.++|+|-.+.
T Consensus 7 L~~lan~lG~~--~~~LIvlYH~v~ 29 (36)
T 1rkl_A 7 LNSLAITFGIV--MMTLIVIYHAVD 29 (36)
T ss_dssp GGHHHHHHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHh
Confidence 35689999966 666667665543
No 4
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=27.55 E-value=56 Score=19.57 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhee
Q 027354 197 GRLLNFTGLSILLFGLFVDLSVA 219 (224)
Q Consensus 197 ~~i~n~~Gl~~~~~~~~v~~~~~ 219 (224)
..++|++|+. ++.++|+|-.+
T Consensus 8 ~~lan~lG~~--~~~LIVlYH~v 28 (37)
T 2lat_A 8 AIFANMLGVS--LFLLVVLYHYV 28 (37)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHH
Confidence 4688999966 55666666543
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=20.00 E-value=64 Score=18.81 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhheecccC
Q 027354 199 LLNFTGLSILLFGLFVDLSVALARY 223 (224)
Q Consensus 199 i~n~~Gl~~~~~~~~v~~~~~~~~~ 223 (224)
+-+.+--++++||+++.-+..+.|+
T Consensus 4 lCYiLDgiL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 4 LCYLLDGILFIYGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHh
Confidence 4456667788899888777666654
No 6
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=12.69 E-value=2.1e+02 Score=26.21 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHH
Q 027354 122 SLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEAATFLKLHHEREGRLLN 201 (224)
Q Consensus 122 S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~e~~i~n 201 (224)
+.|.+=.-.-+++..+-..-|+ +-+..++-|+..+.. |..++++.++++.+|+.-- |-|.++....++.|
T Consensus 95 ~~H~~gAs~ffi~iylHi~Rgl----yygsY~~Pr~~~W~~----Gv~l~ll~m~taF~GYvLP--wgQmSfWgatVITn 164 (445)
T 2qjy_A 95 YLHANGASLFFIAVYLHIFRGL----YYGSYKAPREVTWIV----GMLIYLAMMATAFMGYVLP--WGQMSFWGATVITG 164 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHTTTSTTCHHHHHH----HHHHHHHHHHHHHHHHHTT--CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhcccCCCccceeee----hHHHHHHHHHHHHHheecc--CCccchHHHHHHHH
Q ss_pred HHH
Q 027354 202 FTG 204 (224)
Q Consensus 202 ~~G 204 (224)
.++
T Consensus 165 Lls 167 (445)
T 2qjy_A 165 LFG 167 (445)
T ss_dssp HHH
T ss_pred HHH
No 7
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=12.39 E-value=5.8e+02 Score=20.78 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhhhhHhhhc--cCCchh------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 127 IGMGTFCLFGLQWLFGFSIYML--RGPTEA------------RRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 127 lGl~~~~l~~lQ~~~G~~~~l~--p~~~~~------------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
+|-.+...+..|.+.|++--++ |..... ..-.++..|+...-..|+....=..=|++..
T Consensus 36 fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyyg 108 (215)
T 1vf5_A 36 LGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTG 108 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCChhHHHHHHHHHHhhcccchhhccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 7988888999999999765443 322111 1124467899888888887777777777655
No 8
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=10.84 E-value=6.1e+02 Score=20.10 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhhHhhhc-cCCc--------h-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 130 GTFCLFGLQWLFGFSIYML-RGPT--------E-------ARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 130 ~~~~l~~lQ~~~G~~~~l~-p~~~--------~-------~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
+..++..+|.+.|++.... .+.+ . ........+|.+.+.++..+...=+...+...
T Consensus 135 ~l~~ll~~~~ltG~~~~~~~~~~~~f~~~~~~~~~f~~~~~~~~~~~~iH~~~a~~l~~~v~lHv~aal~h~ 206 (235)
T 4gd3_A 135 GYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALRED 206 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCSSCGGGHHHHHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCcccchhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888865321 0111 0 11235667899998888877776666666543
No 9
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=13.53 E-value=60 Score=23.31 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=31.7
Q ss_pred cccccchhHHHHHHHHHHHhHHhheecc----c-ccchhHHHHHH--HHHHHHHHHHHHHHHH
Q 027354 52 RVFNVHPFLMFCGFVFLAGQAMMAYKTV----F-ASRIVQKTVHM--LLHLTAFCLGVVGLCA 107 (224)
Q Consensus 52 ~~F~~Hp~lM~lgfv~l~~eaiL~~r~~----~-~~~~~~k~iH~--~l~~la~~~~~iG~~a 107 (224)
.-+.-||+.- +|. +..-+++.+... + +++...|.+|+ ..|.+++.+.+.|.+.
T Consensus 22 rk~ke~Plvp-Ig~--~~~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~y 81 (93)
T 2lom_A 22 RKAKEAPFVP-VGI--AGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGY 81 (93)
Confidence 4456777665 332 222234444332 1 25556777777 7799999988888764
No 10
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=8.24 E-value=7.6e+02 Score=19.38 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=14.1
Q ss_pred CcccchhhHHHHHHHHHHHHhhh
Q 027354 120 MYSLHSWIGMGTFCLFGLQWLFG 142 (224)
Q Consensus 120 f~S~Hs~lGl~~~~l~~lQ~~~G 142 (224)
|...|-.+|++.+.....|...|
T Consensus 145 ~HglHV~~G~i~l~~~~~r~~~~ 167 (204)
T 1fft_C 145 THGLHVTSGLIWMAVLMVQIARR 167 (204)
T ss_dssp HHTTHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567777776666666665443
Done!