Query 027354
Match_columns 224
No_of_seqs 136 out of 511
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 14:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027354.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027354hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfc_ f.21.1.1 (C:) Formate 78.3 11 0.0008 28.3 10.7 136 86-221 13-175 (216)
2 d1kqfc_ f.21.1.1 (C:) Formate 46.2 51 0.0037 24.2 12.4 67 115-182 103-173 (216)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 42.1 74 0.0054 24.9 11.2 59 127-185 32-104 (261)
4 d1q90b_ f.21.1.2 (B:) Cytochro 33.2 94 0.0068 23.5 10.8 63 122-184 28-104 (212)
5 d1ppjc2 f.21.1.2 (C:15-260) Mi 26.0 1.3E+02 0.0097 23.0 9.6 59 127-185 19-91 (246)
6 d1ijdb_ f.3.1.1 (B:) Light-har 25.0 9.6 0.0007 21.7 0.6 21 3-27 15-36 (40)
7 d1nkzb_ f.3.1.1 (B:) Light-har 22.4 12 0.00084 21.5 0.6 21 3-27 14-35 (41)
8 d3cx5c2 f.21.1.2 (C:1-261) Mit 18.9 58 0.0042 25.6 4.5 57 121-185 79-135 (261)
9 d1q90b_ f.21.1.2 (B:) Cytochro 18.4 46 0.0034 25.4 3.6 56 121-184 80-135 (212)
10 d1no1a_ a.179.1.1 (A:) Repliso 10.2 1.5E+02 0.011 17.6 3.6 30 137-167 7-38 (67)
No 1
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=78.29 E-value=11 Score=28.31 Aligned_cols=136 Identities=10% Similarity=0.046 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-----CCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCCchh------
Q 027354 86 QKTVHMLLHLTAFCLGVVGLCAVFKYHDMAG-----LTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEA------ 154 (224)
Q Consensus 86 ~k~iH~~l~~la~~~~~iG~~ai~~~k~~~~-----~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~------ 154 (224)
.+..||..-.+-+.+.+.|+...+..-.... ......+|-++|.+.+...+.-....+-....+.....
T Consensus 13 ~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
T d1kqfc_ 13 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIV 92 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 4568998887777788888776543221110 11123568888776555544433322221111111100
Q ss_pred -----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhH-----HHHHHHHHHHHHHHHHHhhe
Q 027354 155 -----------RRAIMLPWHVCGGRALLYMAICSALTGLMEAATFLKLHHEREGR-----LLNFTGLSILLFGLFVDLSV 218 (224)
Q Consensus 155 -----------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~~f~~~~~~~e~~-----i~n~~Gl~~~~~~~~v~~~~ 218 (224)
...++.|..+......++++..-+.+|+.--........+.+.. +=...+.+++.+.++.+|.+
T Consensus 93 ~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a 172 (216)
T d1kqfc_ 93 EVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMA 172 (216)
T ss_dssp HHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01134567888888888888888889976321011112222221 22367777888888888877
Q ss_pred ecc
Q 027354 219 ALA 221 (224)
Q Consensus 219 ~~~ 221 (224)
+..
T Consensus 173 ~~~ 175 (216)
T d1kqfc_ 173 FWV 175 (216)
T ss_dssp HHB
T ss_pred Hcc
Confidence 643
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=46.22 E-value=51 Score=24.22 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=47.7
Q ss_pred cCCCCCcccchhhHHHHHHHHHHHHhhhhHhhhccCC----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 115 AGLTDMYSLHSWIGMGTFCLFGLQWLFGFSIYMLRGP----TEARRAIMLPWHVCGGRALLYMAICSALTGL 182 (224)
Q Consensus 115 ~~~~hf~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~----~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 182 (224)
.+..+++....+.....++....+.+.|+..+. |.. +.........+|.+...++....++=+.+.+
T Consensus 103 ~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~-~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~ 173 (216)
T d1kqfc_ 103 ADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR-PYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAF 173 (216)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT-TTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888999999999997543 322 2233455667999988888777776665554
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.14 E-value=74 Score=24.93 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhhhhHhhhc--cCCchh------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 127 IGMGTFCLFGLQWLFGFSIYML--RGPTEA------------RRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 127 lGl~~~~l~~lQ~~~G~~~~l~--p~~~~~------------~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
+|-.+...+++|.+.|++-.++ |..... ..-.++..|+...-..+++...=..-++..+
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~g 104 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYG 104 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhc
Confidence 6888888999999999876544 332111 1234567899998888888888887777765
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=33.24 E-value=94 Score=23.52 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=42.1
Q ss_pred ccchhhHHHHHHHHHHHHhhhhHhhhc--cCCchh-------hh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 122 SLHSWIGMGTFCLFGLQWLFGFSIYML--RGPTEA-------RR-----AIMLPWHVCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 122 S~Hs~lGl~~~~l~~lQ~~~G~~~~l~--p~~~~~-------~r-----~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 184 (224)
|+-=.+|-++...+..|.+.|++-.++ |..... .| ..++..|++..-..+++...=..-++..
T Consensus 28 ~~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~ 104 (212)
T d1q90b_ 28 NIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLT 104 (212)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHc
Confidence 334458999999999999999976544 332211 11 2456789988888877766666655543
No 5
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.00 E-value=1.3e+02 Score=22.99 Aligned_cols=59 Identities=22% Similarity=0.095 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHhhhhHhhhc--cCCchhh------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 127 IGMGTFCLFGLQWLFGFSIYML--RGPTEAR------------RAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 127 lGl~~~~l~~lQ~~~G~~~~l~--p~~~~~~------------r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
.|-++...++.|.+.|++--++ |...... .-.++..|++..-..+++...=..-|+..+
T Consensus 19 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~ 91 (246)
T d1ppjc2 19 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYG 91 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhc
Confidence 6888888899999999876544 3322111 123467898877777777777777776655
No 6
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=25.03 E-value=9.6 Score=21.74 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=14.1
Q ss_pred ccccc-cccccchhhHHHHHHHHHHH
Q 027354 3 YSIDR-VSYRRSASRLTIGAHLFGIL 27 (224)
Q Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~l~i~ 27 (224)
|-||+ |.|. ..++++|+|.-+
T Consensus 15 ~vIdGtRvF~----~iA~~AH~La~~ 36 (40)
T d1ijdb_ 15 HVIDGTRVFL----VIAAIAHFLAFT 36 (40)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhhcchhHHH----HHHHHHHHHHHh
Confidence 55676 6666 677788877543
No 7
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=22.39 E-value=12 Score=21.49 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=14.1
Q ss_pred ccccc-cccccchhhHHHHHHHHHHH
Q 027354 3 YSIDR-VSYRRSASRLTIGAHLFGIL 27 (224)
Q Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~l~i~ 27 (224)
|-||+ |.|. ..++++|++.-+
T Consensus 14 ~vIdGtRvF~----~iA~~AH~La~~ 35 (41)
T d1nkzb_ 14 YVIDGTRVFL----GLALVAHFLAFS 35 (41)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhhcchHHHH----HHHHHHHHHHHH
Confidence 55676 6666 677778877644
No 8
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.86 E-value=58 Score=25.59 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=39.5
Q ss_pred cccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 121 YSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLMEA 185 (224)
Q Consensus 121 ~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~ 185 (224)
.+.|.|-.=..+++..++..-|+.. +..++.| ..--..|..++++.++++.+|+.-.
T Consensus 79 R~~H~~ga~~~~~~~~lH~~r~~~~----gsy~~pr----e~~W~~Gv~l~~l~~~~af~GY~Lp 135 (261)
T d3cx5c2 79 RYLHANGASFFFMVMFMHMAKGLYY----GSYRSPR----VTLWNVGVIIFILTIATAFLGYCCV 135 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----TTTSTTC----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHHHh----ccccCcc----chhHHhhHHHHHHHHHHHHhhhhcC
Confidence 4677777777777778887776632 2222112 3455789999999999999998654
No 9
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.38 E-value=46 Score=25.41 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=36.0
Q ss_pred cccchhhHHHHHHHHHHHHhhhhHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027354 121 YSLHSWIGMGTFCLFGLQWLFGFSIYMLRGPTEARRAIMLPWHVCGGRALLYMAICSALTGLME 184 (224)
Q Consensus 121 ~S~Hs~lGl~~~~l~~lQ~~~G~~~~l~p~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 184 (224)
.+.|.|-.=..+++..++..-++. -+..++. +..--..|..++.+.++++.+|+.-
T Consensus 80 R~lH~~gAs~~~~~~~lHm~r~~~----~gsyk~p----re~~W~~Gv~l~~l~m~~aftGY~L 135 (212)
T d1q90b_ 80 RSIHRWSASMMVLMMVLHVFRVYL----TGGFKRP----RELTWVTGVIMAVCTVSFGVTGYSL 135 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----TTTTSSS----CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHH----cCcccCc----ccceehHhHHHHHHHHHHHHhhhhc
Confidence 467777776666777777666552 1212111 2355678888888888888888754
No 10
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=10.17 E-value=1.5e+02 Score=17.57 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHhhhhHhhhccCC--chhhhhhhHHHHHHHH
Q 027354 137 LQWLFGFSIYMLRGP--TEARRAIMLPWHVCGG 167 (224)
Q Consensus 137 lQ~~~G~~~~l~p~~--~~~~r~~~~~~H~~~G 167 (224)
.|.+- .++-++|+. +.+.+...+.|||...
T Consensus 7 vqilk-avsefypgrfqpddlkgtvkawhrvla 38 (67)
T d1no1a_ 7 VQILK-AVSEFYPGRFQPDDLKGTVKAWHRVLA 38 (67)
T ss_dssp HHHHH-HHHHHSTTTCCCTTHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHCCCCCCccccchHHHHHHHHHH
Confidence 34433 336678886 3446788899999754
Done!