BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027355
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 301 bits (771), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/236 (66%), Positives = 186/236 (78%), Gaps = 15/236 (6%)
Query: 1 MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNPKKYCVRPNTGII 59
M+TGDLVNI P+ELKFPFELKKQSSCSMQLTNKT + VAFKVKTTNP+KYCVRPNTG++
Sbjct: 1 MTTGDLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVV 60
Query: 60 LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEF 119
LP SC VTVTMQAQKEAP D QCKDKFL+ +VV DG T+K++ +MF KE G+V+E+F
Sbjct: 61 LPGDSCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDF 120
Query: 120 KLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDD--------------AWSM 165
KLRVVYIPANPPSPVPEGSEEG+SP A + + S FDD AWSM
Sbjct: 121 KLRVVYIPANPPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSEAWSM 180
Query: 166 ISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLV 221
ISKLTEEKTSA QQ+QKLR ELE +RKE SK ++GG S + +LL+GLLG ++GYL+
Sbjct: 181 ISKLTEEKTSATQQSQKLRLELEMLRKETSKKQSGGHSLLLMLLVGLLGCVIGYLL 236
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 256 bits (654), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 138/240 (57%), Positives = 180/240 (75%), Gaps = 16/240 (6%)
Query: 1 MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIIL 60
MS +L+ ++P +L+FPFELKKQ SCS+ LTNKTD VAFKVKTTNPKKYCVRPNTG++L
Sbjct: 17 MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76
Query: 61 PRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFK 120
PR++C V VTMQAQKEAP D QCKDKFLL V+A G TAK++ P+MF+KE G VEE K
Sbjct: 77 PRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETK 136
Query: 121 LRVVYI-PANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFD---------------DAWS 164
LRV Y+ P PPSPV EGSEEGSSPRA +NG+ SF+ +A +
Sbjct: 137 LRVTYVAPPRPPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAGHQENTSEARA 196
Query: 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLVKTT 224
+I+KLTEEK SA+Q N +L++EL+ +R+E KS++GG ++VLL+GL+G+++GY++K T
Sbjct: 197 LITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLILGYIMKRT 256
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 248 bits (633), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/240 (57%), Positives = 176/240 (73%), Gaps = 20/240 (8%)
Query: 3 TGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPR 62
+ +L+ I P +L+FPFELKKQ SCS+ L NKTD +VAFKVKTTNPKKYCVRPNTG++ PR
Sbjct: 2 SNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPR 61
Query: 63 TSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLR 122
+S V VTMQAQKEAP D QCKDKFLL VVA GAT KD+ +MF+KE G VEE KLR
Sbjct: 62 SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLR 121
Query: 123 VVYI-PANPPSPVPEGSEEGSSPRAFSQENGN-----------------HHNSSFDDAWS 164
VVY+ P PPSPV EGSEEGSSPRA +NGN NSS +A +
Sbjct: 122 VVYVAPPRPPSPVREGSEEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSS--EARA 179
Query: 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLVKTT 224
+++KLTEEK SA+Q N +L+QEL+ +R+E +S++GG ++VLL+GL+G+++GY++K T
Sbjct: 180 LVTKLTEEKNSAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKRT 239
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 146/220 (66%), Gaps = 14/220 (6%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
L++IQP ELKF FEL+KQS C +++ NKT+ +VAFKVKTT+PKKY VRPNTG+I P SC
Sbjct: 9 LISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSC 68
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVY 125
+ VT+QAQ+E PPD QCKDKFLL S + P ++ D FTK+ GK + E KL+V Y
Sbjct: 69 IIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSY 128
Query: 126 IPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQNQKLRQ 185
I PS SE G++ NG+ +S + S I +L EE+ +A++Q Q+L+
Sbjct: 129 I---TPSTTQRSSESGAT-------NGDGQSS---ETISTIQRLKEERDAAVKQTQQLQH 175
Query: 186 ELEFVRKEISKSRAG-GFSTVFVLLIGLLGILVGYLVKTT 224
ELE VR+ ++ +G G S ++GL+G+++G+++K T
Sbjct: 176 ELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIGFILKLT 215
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 TGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPR 62
+ +L+ I P +++FP EL K+ SCS+ LTNKT+ +VAFK KTTN KKY VRPN G++LPR
Sbjct: 173 SDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPR 232
Query: 63 TSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLR 122
+SC V V MQA KEAP D QC+DK L V TAKD+ +MF+KE G EE +L+
Sbjct: 233 SSCEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLK 292
Query: 123 VVYI-PANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSA 176
V+Y+ P PPSPV EG+EEGSSPRA +NGN + D S++ L S+
Sbjct: 293 VMYVTPPQPPSPVQEGTEEGSSPRASVSDNGNASEAFVDMLRSLLVPLFSNAASS 347
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 1 MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIIL 60
MST +L+ +++FP EL KQ SCS+ LTNKTD +VAFK +TT PK YCV+P+ G++L
Sbjct: 1 MSTDELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVL 60
Query: 61 PRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFK 120
PR+SC V V MQA KEAP D QCKDK L V G K++ +MF+KE G VEE
Sbjct: 61 PRSSCEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETI 120
Query: 121 LRVVYI-PANPPSPVPEGSEEGSSPRAFSQENGN 153
+++Y+ P P SPV EG E+GSSP A + GN
Sbjct: 121 FKIIYVAPPQPQSPVQEGLEDGSSPSASVSDKGN 154
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 96/126 (76%)
Query: 1 MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIIL 60
MS +L+ I+P L+FPFELKKQ SCS+ LTNKTD VAFKVKTTN YCVRPN G+IL
Sbjct: 1 MSNNELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLIL 60
Query: 61 PRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFK 120
P+++C V VTMQAQKE P D Q +KF++ SV+A G TAK++ +MF+KE G VVEE K
Sbjct: 61 PKSTCKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETK 120
Query: 121 LRVVYI 126
LRV Y+
Sbjct: 121 LRVTYV 126
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
L++IQP L+F +LKKQ+SC +QLTN T +VAFKVKTT+PKKYCVRPN G++ P+++C
Sbjct: 5 LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVY 125
TV MQA KE PPD CKDKFL+ S T +DI MF+K +GK +EE KLRV
Sbjct: 65 EFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTL 124
Query: 126 IPANPPSPVPEGS 138
+ PPS PE S
Sbjct: 125 V---PPSDSPELS 134
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 157 SSFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVR-KEISKSRAGGFSTVFVLLIGLLGI 215
S A S ISKL EE++ + Q Q L+ EL +R K+I K GF ++V ++ +
Sbjct: 319 SKLKQADSTISKLMEERSISSQHRQSLQHELAELRTKKIVKEVHNGFPLLYVCVVAFIAY 378
Query: 216 LVGYLVKT 223
++G+ ++T
Sbjct: 379 VIGHFLRT 386
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 31/198 (15%)
Query: 13 ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQ 72
EL+F + ++L+N TD+ + FKVKTT PK+YCVRPN+GI+ P+TS AV V +Q
Sbjct: 15 ELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVMLQ 74
Query: 73 AQKEAPPDFQCKDKFLLLSVVAPDGATA------KDIGPDMFTKEDGKVVEEFKLRVVYI 126
P+ + K KF++ S+ APD KD P+ + KLR V+
Sbjct: 75 PFNYD-PNEKNKHKFMVQSMYAPDHVVESQELLWKDAPPESLM--------DTKLRCVF- 124
Query: 127 PANPPSPVPEGSEEG-SSPRAFSQENGNHHNSSFDDAWSMISKLTEEKT--------SAM 177
+P+GS + +S + + + G H + S + ++ S+ TE ++ SA
Sbjct: 125 ------EMPDGSHQAPASDASRATDAGAHFSESALEDPTVASRKTETQSPKRVGAVGSAG 178
Query: 178 QQNQKLRQELEFVRKEIS 195
+ +KL+ EL+ + EI+
Sbjct: 179 EDVKKLQHELKKAQSEIT 196
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 28 MQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKDK 86
+ + N + V FKVKTT PK YCVRPN+G I P+++ V V +QA KE P PDF+C+DK
Sbjct: 23 ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDK 82
Query: 87 FLLLSVVAPDGATAKDIGPDMFTKE---DGKVVEEFKLRVVYIPANPP 131
FL+ S+ D T+ F E G+ + + K+R VY PP
Sbjct: 83 FLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPP 130
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
LV P++LKF + +++L N +D+ V FKVKTT P++YCVRPN+GII P ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPDMFTKEDGKVVEEFK 120
V+V +Q + P+ + K KF++ ++ AP A K+ PD + K
Sbjct: 75 TVSVMLQPF-DYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELM--------DSK 125
Query: 121 LRVVYIPANPPSPVPEGSEEGSSPRAFSQENG---NHHNSSFDDAWSM-----ISKLTEE 172
LR V+ N + + + P S+++G H+ S +D + +L E
Sbjct: 126 LRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGE 185
Query: 173 KTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFV----------LLIGLLGILVGYLV 221
++N+ LR E +RK + G ST LL+ + I +G+ +
Sbjct: 186 MMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL 244
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
LV P++LKF + +++L N +D+ V FKVKTT P++YCVRPN+GII P ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPDMFTKEDGKVVEEFK 120
V+V +Q + P+ + K KF++ ++ AP A K+ PD + K
Sbjct: 75 TVSVMLQPF-DYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELM--------DSK 125
Query: 121 LRVVYIPANPPSPVPEGSEEGSSPRAFSQENG---NHHNSSFDDAWSM-----ISKLTEE 172
LR V+ N + + + P S+++G H+ S +D + +L E
Sbjct: 126 LRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGE 185
Query: 173 KTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFV----------LLIGLLGILVGYLV 221
++N+ LR E +RK + G ST LL+ + I +G+ +
Sbjct: 186 MMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL 244
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
LV PS+LKF + +++L N +D+ V FKVKTT P++YCVRPN+GII P +
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIV 74
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPDMFTKEDGKVVEEFK 120
V+V +Q + P+ + K KF++ ++ AP A K+ PD + K
Sbjct: 75 TVSVMLQPF-DYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELM--------DSK 125
Query: 121 LRVVYIPANPPSPVPEGSEEGSSPRAFSQENG---NHHNSSFDDAWSM-----ISKLTEE 172
LR V+ N + + + P S+++G H+ S +D + +L E
Sbjct: 126 LRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPLPKPHSVSLNDTETRKLMEECKRLQGE 185
Query: 173 KTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFV----------LLIGLLGILVGYLV 221
++N+ LR E +RK + G S V LL+ + I +G+ +
Sbjct: 186 MMKLSEENRHLRDEGLRLRKVAHSDKPGSTSAVSFRDNVTSPLPSLLVVIAAIFIGFFL 244
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
LV PS+LKF + +++L N +D+ V FKVKTT P++YCVRPN+G+I P +
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIV 74
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPDMFTKEDGKVVEEFK 120
V+V +Q + P+ + K KF++ ++ AP A K+ PD + K
Sbjct: 75 TVSVMLQPF-DYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELM--------DSK 125
Query: 121 LRVVYIPANPPSPVPEGSEEGSSPRAFSQENG---NHHNSSFDDAWSM-----ISKLTEE 172
LR V+ N + + + P S+++G H+ S +D + +L E
Sbjct: 126 LRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPLPKPHSVSLNDTETRKLMEECKRLQGE 185
Query: 173 KTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFV----------LLIGLLGILVGYLV 221
++N+ LR E +RK + G S V LL+ + I +G+ +
Sbjct: 186 MMKLSEENRHLRDEGLRLRKVAHSDKPGSTSAVSFRDNVTSPLPSLLVVIAAIFIGFFL 244
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCA 66
V I P L + L +QS+ ++N +D+ +AFKVKTT PK YCVRPN ++ P +
Sbjct: 4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQ 63
Query: 67 VTVTMQAQKEAP-PDFQCKDKFLLLSVVAP---DGATAKDIGPDMFTKEDGKVVEEFKLR 122
V V E P DF+C+DKFL++++ +P +G D+ D+ + + + + K++
Sbjct: 64 VQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISK-KIK 122
Query: 123 VVYI 126
V Y+
Sbjct: 123 VKYL 126
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71
S + FP L + C ++L N + FKVKTT PK+YCVRPN G I ++ +V V +
Sbjct: 7 STIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVIL 66
Query: 72 QAQKEAP-PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVY 125
Q P P +C+DKFL+ S DI D++T+ + E K+R VY
Sbjct: 67 QPLDHEPAPGTKCRDKFLVQSTELKPELQGMDIA-DIWTQVSKANISERKIRCVY 120
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 32/239 (13%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
LV P++LKF + +++L N +D+ V FKVKTT P++YCVRPN+GII P +
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTV 74
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPDMFTKEDGKVVEEFK 120
V+V +Q + P+ + K KF++ ++ AP A K+ PD + K
Sbjct: 75 TVSVMLQPF-DYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELM--------DSK 125
Query: 121 LRVVYIPANPPSPVPEGSEEGSSPRAFSQENG---NHHNSSFDDAWSM-----ISKLTEE 172
LR V+ N + + + P ++++G H+ S D + +L E
Sbjct: 126 LRCVFEMPNENDKLNDMEPSKAVPLNAAKQDGPVPKPHSVSLSDTETRKLVEECKRLQGE 185
Query: 173 KTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFV----------LLIGLLGILVGYLV 221
++N+ LR E +RK + G S V LL+ + I +G+ +
Sbjct: 186 MMKLSEENRLLRDEGLRLRKVAHSEKPGSTSAVSFRENVTSPLPSLLVVIAAIFIGFFL 244
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 42/246 (17%)
Query: 6 LVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
+++++P ELKF + +++L N TD+ V FKVKTT P++YCVRPN+GII S
Sbjct: 7 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGAS 66
Query: 65 CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124
V+V +Q + P+ + K KF++ S+ AP + + ED + + KLR V
Sbjct: 67 INVSVMLQPF-DYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPED---LMDSKLRCV 122
Query: 125 Y-IPANPPSP--------VPEGSEEGSSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTS 175
+ +PA P +P + + +P +SS DD + + K+ EE
Sbjct: 123 FELPAENDKPHDVEINKIIPTTASKTETPTV-----SKALSSSLDD--TEVKKVMEECKR 175
Query: 176 AMQQNQKLRQELEFVRKEI---------------SKSRAG---GFST---VFVLLIGLLG 214
+ Q+LR+E + ++E + + AG G ST V+L ++G
Sbjct: 176 LQSEVQRLREENKQFKEEDGLRMRKTAQSNSPAPASAMAGKEEGLSTRLLALVVLFFIVG 235
Query: 215 ILVGYL 220
+++G +
Sbjct: 236 VIIGKI 241
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 32/241 (13%)
Query: 6 LVNIQP-SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
+++++P ELKF + +++L N TD+ V FKVKTT P++YCVRPN+GII S
Sbjct: 7 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGAS 66
Query: 65 CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124
V+V +Q + P+ + K KF++ S+ AP + + ED + + KLR V
Sbjct: 67 INVSVMLQPF-DYDPNEKSKHKFMVQSMFAPADTSDMEAAWKEAKPED---LMDSKLRCV 122
Query: 125 Y-IPANPPSPVPEGSEEGSSPRAFSQEN---GNHHNSSFDDAWSMISKLTEEKTSAMQQN 180
+ +PA P + S A E +S+ DD + + K+ EE +
Sbjct: 123 FELPAENDKPHDVEINKIISTTASKTETPVVSKALSSALDD--TEVKKVMEECKRLQSEV 180
Query: 181 QKLRQELEFVRKE---------ISKSRA---------GGFST---VFVLLIGLLGILVGY 219
Q+LR+E + +++E +S S A G ST V+L ++G+++G
Sbjct: 181 QRLREENKQLKEEDGLRMRKPVLSNSPAPAPATPGKEEGLSTRLLALVVLFFIVGVIIGK 240
Query: 220 L 220
+
Sbjct: 241 I 241
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 21/198 (10%)
Query: 6 LVNIQP-SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
+++++P ELKF + +++L N TD+ V FKVKTT P++YCVRPN+G+I S
Sbjct: 7 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGAS 66
Query: 65 CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124
V+V +Q + P+ + K KF++ S+ AP + + ED + + KLR V
Sbjct: 67 LNVSVMLQPF-DYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPED---LMDSKLRCV 122
Query: 125 Y-IPANPPSP--------VPEGSEEGSSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTS 175
+ +PA P +P + + +P A S DD + + K+ EE
Sbjct: 123 FELPAENAKPHDVEINKIIPTSASKTEAPAA-----AKSLTSPLDD--TEVKKVMEECRR 175
Query: 176 AMQQNQKLRQELEFVRKE 193
+ Q+LR+E +++E
Sbjct: 176 LQGEVQRLREESRQLKEE 193
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 21/198 (10%)
Query: 6 LVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
+++++P ELKF + +++L N TD+ V FKVKTT P++YCVRPN+G+I S
Sbjct: 7 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGAS 66
Query: 65 CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124
V+V +Q + P+ + K KF++ S+ AP + + ED + + KLR V
Sbjct: 67 LNVSVMLQPF-DYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPED---LMDSKLRCV 122
Query: 125 Y-IPANPPSP--------VPEGSEEGSSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTS 175
+ +PA P +P + + +P A S DDA + K+ EE
Sbjct: 123 FELPAENAKPHDVEINKIMPTSASKTEAPVA-----AKPLTSPLDDAE--VKKVMEECRR 175
Query: 176 AMQQNQKLRQELEFVRKE 193
+ Q+LR+E +++E
Sbjct: 176 LQGEVQRLREESRQLKEE 193
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS22 PE=1 SV=2
Length = 175
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCA 66
+ I P +L F L KQS+ ++L N +K V FKV+T+ P KYCVRPN II S
Sbjct: 1 MRIVPEKLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVN 60
Query: 67 VTVTMQAQKEAPPD---FQCKDKFLLLSVVAP-------DGATAKDIGPDMFTK-EDGKV 115
V + ++ D Q +DKFL++++ P DG D P++ + +D V
Sbjct: 61 VQIVFLGLPKSTADDEMDQKRDKFLIVTLPIPAAYQNVEDGELLSD-WPNLEEQYKDDIV 119
Query: 116 VEEFKLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNS 157
++ K+ +P PS G+ + S RA S NG +S
Sbjct: 120 FKKIKIFHSVLPKRKPS----GNHDAESARAPSAGNGQSLSS 157
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C
OS=Homo sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 6 LVNIQP-SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
+++++P ELKF + +++L N TD+ V FKVKTT P++YCVRPN+GII S
Sbjct: 7 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGAS 66
Query: 65 CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAP 95
V+V +Q + P+ + K KF++ S+ AP
Sbjct: 67 INVSVMLQPF-DYDPNEKSKHKFMVQSMFAP 96
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV-- 69
S L FP+E KQ +++L N + AFK +TT PK +RP G++ P S TV
Sbjct: 83 SYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFK 142
Query: 70 ---TMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126
+ ++ P + + K KF ++S+ G + P++F ++ +V E LRV++I
Sbjct: 143 FVEHPENNEKQPLNQKSKVKFKIMSLKVKPGV---EYVPELFDEQKDQVAVEQVLRVIFI 199
Query: 127 PANPPS 132
A+ PS
Sbjct: 200 DADRPS 205
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 1 MSTGDLVNIQPSE-LKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
+ T + + PSE L FP+E KQ ++++ N + VAFK +TT PK +RP I+
Sbjct: 102 LPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAIL 161
Query: 60 LPRTSCAVT----VTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKV 115
P + T V E P D + + KF ++S+ D P++F ++ V
Sbjct: 162 APGETIIATVFKFVEPPENNEKPMDQRSRVKFKIMSLKV---KGPMDYVPELFDEQKDDV 218
Query: 116 VEEFKLRVVYI 126
+E LRV+++
Sbjct: 219 SKEQILRVIFL 229
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 1 MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
+ T + + PS +L FP+E KQ ++++ N + VAFK +TT PK +RP I+
Sbjct: 94 LPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAIL 153
Query: 60 LPRTSCAVTVTMQAQ----KEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKV 115
P TV + E P + + KF ++S+ D P++F ++ V
Sbjct: 154 APGEEIIATVFKFVEPPENNEKPMEQKSGVKFKIMSLKM---KVPTDYMPELFEEQKDHV 210
Query: 116 VEEFKLRVVYI-PANPPS 132
EE +RVV++ P NP S
Sbjct: 211 SEEQVMRVVFLDPENPNS 228
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 4 GDLVNIQPSE-LKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPR 62
G L++I P+E L F + + LTN T VAFKV+TT P+KY V+P+ P
Sbjct: 325 GPLLHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPG 384
Query: 63 TSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKV----VEE 118
S + V+ +D+FL++ A + + GP T+ +V V E
Sbjct: 385 ASVDIVVSPHGGLTV----SAQDRFLIM---AAEMEQSSGTGPAELTQFWKEVPRNKVME 437
Query: 119 FKLRVVYIPANPPS 132
+LR + ++ P+
Sbjct: 438 HRLRCHTVESSKPN 451
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 4 GDLVNIQPSE-LKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPR 62
G L++I P+E L F + + LTN T VAFKV+TT P+KY V+P+ P
Sbjct: 325 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPG 384
Query: 63 TSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGP---DMFTKE--DGKVVE 117
S + V+ +D+FL++ A + + GP F KE KV+E
Sbjct: 385 ASIDIIVSPHGGLTV----SAQDRFLIM---AAEMEQSSGTGPAELSQFWKEVPRNKVME 437
Query: 118 EFKLRVVYIPANPPSPV 134
+LR + ++ P+ +
Sbjct: 438 H-RLRCHTVESSKPNSL 453
>sp|P27440|MSP2_ASCSU Major sperm protein isoform beta OS=Ascaris suum PE=1 SV=3
Length = 127
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 7 VNIQP-SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
+N QP S++ F + + +++TN + + + +KTTN ++ V P G++ P+ S
Sbjct: 10 INTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESV 69
Query: 66 AVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGA 98
+ V+ A D D+ + PDGA
Sbjct: 70 LMAVSCDTFNAATEDLN-NDRITIEWTNTPDGA 101
>sp|P27439|MSP1_ASCSU Major sperm protein isoform alpha OS=Ascaris suum PE=1 SV=3
Length = 127
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 4 GDLVNIQPSE-LKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPR 62
GD +N QPS+ + F + + +++TN + + + +KTTN ++ V P G++ P+
Sbjct: 8 GD-INTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPK 66
Query: 63 TSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKV 115
+ V+ A D D+ + PDGA AK + F + DG V
Sbjct: 67 EKVLMAVSCDTFNAATEDLN-NDRITIEWTNTPDGA-AKQFRREWF-QGDGMV 116
>sp|B0UUM0|RECF_HAES2 DNA replication and repair protein RecF OS=Haemophilus somnus
(strain 2336) GN=recF PE=3 SV=1
Length = 358
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 142 SSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQ 179
S RA+ HHN+SF +AWS +++L +++ SA+QQ
Sbjct: 130 SYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSALQQ 167
>sp|Q0I0Y5|RECF_HAES1 DNA replication and repair protein RecF OS=Haemophilus somnus
(strain 129Pt) GN=recF PE=3 SV=1
Length = 358
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 142 SSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQ 179
S RA+ HHN+SF +AWS +++L +++ SA+QQ
Sbjct: 130 SYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSALQQ 167
>sp|Q4QLR9|RECF_HAEI8 DNA replication and repair protein RecF OS=Haemophilus influenzae
(strain 86-028NP) GN=recF PE=3 SV=1
Length = 359
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 142 SSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQNQ 181
S RAF HH +SF AWS +++L +++ +A+ QNQ
Sbjct: 130 SYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQ 169
>sp|P43767|RECF_HAEIN DNA replication and repair protein RecF OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recF PE=3
SV=1
Length = 359
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 142 SSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQNQ 181
S RAF HH +SF AWS +++L +++ +A+ QNQ
Sbjct: 130 SYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQ 169
>sp|P34538|YNC5_CAEEL Uncharacterized protein R05D3.5 OS=Caenorhabditis elegans
GN=R05D3.5 PE=2 SV=3
Length = 178
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 19 ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78
E +K S +++L N T V++KV+ T+ + V+P G + P + ++ + Q Q +
Sbjct: 76 EDRKPISVNLKLHNPTAVTVSYKVRCTSADIFRVQPPLGFVKPSETVSIVIWYQNQDKK- 134
Query: 79 PDFQCKDKFLLLSVVAPDGATAKDI 103
D K+ + DG TA+++
Sbjct: 135 -DAISKNHYFAFYHTNSDGRTAREL 158
>sp|P13263|MSP2_ONCVO Major sperm protein 2 OS=Onchocerca volvulus PE=2 SV=3
Length = 127
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 4 GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRT 63
GD+ S++ F + + +++TN + + + +KTTN K+ V P G++ P+
Sbjct: 8 GDIHTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMKRLGVDPPCGVLDPKE 67
Query: 64 SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGA 98
+ + V+ D D+ + PDGA
Sbjct: 68 NVLMAVSCDTFDATREDIN-NDRITIEWTNTPDGA 101
>sp|P13262|MSP1_ONCVO Major sperm protein 1 OS=Onchocerca volvulus PE=2 SV=3
Length = 127
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 4 GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRT 63
GD+ S++ F + + + +TN + + + +KTTN K+ V P G++ P+
Sbjct: 8 GDIHTQPGSKIVFNAPYDDKHTYHINITNAGGRRIGWAIKTTNMKRLGVDPPCGVLDPKE 67
Query: 64 SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGA 98
+ + V+ D D+ + PDGA
Sbjct: 68 NVLMAVSCDTFDATREDIN-NDRITIEWTNTPDGA 101
>sp|P34593|YOD1_CAEEL Uncharacterized protein ZC262.1 OS=Caenorhabditis elegans
GN=ZC262.1 PE=4 SV=1
Length = 131
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 19 ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78
E +K S +++L N T V++KV+ T+ + V+P G + P + ++ + Q Q +
Sbjct: 29 EDRKPISVNLKLHNPTAVTVSYKVRCTSADIFRVQPPLGFVKPSETVSIVIWYQNQDKK- 87
Query: 79 PDFQCKDKFLLLSVVAPDGATAKDIGPD 106
D K+ + DG TA+++ +
Sbjct: 88 -DAISKNHYFAFYHTNSDGRTARELWAN 114
>sp|Q23246|SSPZC_CAEEL Sperm-specific protein ZC168.6 OS=Caenorhabditis elegans
GN=ZC168.6 PE=1 SV=1
Length = 107
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
++N+ P +P + + +T+++D +AFKVK++N + Y VRP G +
Sbjct: 1 MINVDPPTGNYP---ATGGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFV 51
>sp|Q94053|MSP78_CAEEL Major sperm protein 78 OS=Caenorhabditis elegans GN=msp-78 PE=2
SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 4 GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRT 63
GD+ +++ F + + +++ N + + + + +KTTN K+ V P G++ P+
Sbjct: 8 GDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 64 SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRV 123
+ + V+ A D D+ + PDGA AK + F + DG +V L +
Sbjct: 68 AVLLAVSCDAFAFGQEDTN-NDRITIEWTNTPDGA-AKQFRREWF-QGDG-MVRRKNLPI 123
Query: 124 VYIP 127
Y P
Sbjct: 124 EYNP 127
>sp|A6VK88|RECF_ACTSZ DNA replication and repair protein RecF OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=recF PE=3
SV=1
Length = 358
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 142 SSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQ 179
S RAF HH +F AWS +++L +++ +A+QQ
Sbjct: 131 SYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQ 168
>sp|Q9XXL3|SSP31_CAEEL Sperm-specific class P protein 31 OS=Caenorhabditis elegans
GN=ssp-31 PE=1 SV=1
Length = 107
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
++NI P +P S + + ++++ +AFKVK++N + Y VRP G +
Sbjct: 1 MINIDPPSGDYP---ASGGSSTHYIVSESESRLAFKVKSSNNESYRVRPVYGFV 51
>sp|P53018|MSP32_CAEEL Major sperm protein 32 OS=Caenorhabditis elegans GN=msp-32 PE=2
SV=1
Length = 190
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 6 LVNIQP-SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
++ QP +++ F + + +++ N + + + + +KTTN K+ V P G++ P+ +
Sbjct: 72 MIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEA 131
Query: 65 CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124
+ V+ A D D+ + PDGA AK + F + DG +V L +
Sbjct: 132 VLLAVSCDAFAFGQEDTN-NDRITVEWTNTPDGA-AKQFRREWF-QGDG-MVRRKNLPIE 187
Query: 125 YIP 127
Y P
Sbjct: 188 YNP 190
>sp|P53022|MSP2_GLORO Major sperm protein 2 OS=Globodera rostochiensis GN=MSP-2 PE=2 SV=2
Length = 126
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 1 MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIIL 60
+ GD+ + ++ F +++ +++ N + F KTT PK+ + P G++
Sbjct: 4 LPPGDIATMPNQKVVFNAPFDNKATYYVRVINPGTNRIGFAFKTTKPKRINMNPPNGVLG 63
Query: 61 PRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATA 100
P+ S V ++ A + D + D+ + PD A A
Sbjct: 64 PKESVNVAISCDAFDPSSEDTK-GDRVTVEWCNTPDPAAA 102
>sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142
OS=Caenorhabditis elegans GN=msp-19 PE=1 SV=2
Length = 127
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 4 GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRT 63
GD+ +++ F + + +++ N + + + + +KTTN K+ V P G++ P+
Sbjct: 8 GDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 64 SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRV 123
+ + V+ A D D+ + PDGA AK + F + DG +V L +
Sbjct: 68 AVLLAVSCDAFAFGQEDTN-NDRITVEWTNTPDGA-AKQFRREWF-QGDG-MVRRKNLPI 123
Query: 124 VYIP 127
Y P
Sbjct: 124 EYNP 127
>sp|Q23519|MS152_CAEEL Major sperm protein 152 OS=Caenorhabditis elegans GN=msp-152 PE=2
SV=3
Length = 127
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 4 GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRT 63
GD+ +++ F + + +++ N + + + + +KTTN K+ V P G++ P+
Sbjct: 8 GDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 64 SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRV 123
+ + V+ A D D+ + PDGA AK + F + DG +V L +
Sbjct: 68 AVLLAVSCDAFAFGQEDTN-NDRITVEWTNTPDGA-AKQFRREWF-QGDG-MVRRKNLPI 123
Query: 124 VYIP 127
Y P
Sbjct: 124 EYNP 127
>sp|P53023|MSP3_GLORO Major sperm protein 3 OS=Globodera rostochiensis GN=MSP-3 PE=2
SV=2
Length = 126
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
D+ + ++ F +++ +++ N K + F KTT PK+ + P G++ P+ S
Sbjct: 8 DIATMPAQKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKES 67
Query: 65 CAVTVTMQA 73
V ++ A
Sbjct: 68 VNVAISCDA 76
>sp|Q19832|MSP3_CAEEL Major sperm protein 3 OS=Caenorhabditis elegans GN=msp-3 PE=2 SV=3
Length = 127
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 4 GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRT 63
GD+ +++ F + + +++ N + + + + +KTTN K+ V P G++ P+
Sbjct: 8 GDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 64 SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGA 98
+ + V+ A D D+ + PDGA
Sbjct: 68 AVLLAVSCDAFAFGQEDTN-NDRITVEWTNTPDGA 101
>sp|O45433|SSP32_CAEEL Sperm-specific class P protein 32 OS=Caenorhabditis elegans
GN=ssp-32 PE=2 SV=1
Length = 107
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPR 62
++ I+P FP S + +T+ + +AFKVK++N + Y VRP G + R
Sbjct: 1 MLTIEPPSATFP---ASGGSSTHTITSVNESRMAFKVKSSNNEHYRVRPVYGFVEAR 54
>sp|P53021|MSP1_GLORO Major sperm protein 1 OS=Globodera rostochiensis GN=MSP-1 PE=2
SV=2
Length = 126
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
D+ + ++ F +++ +++ N K + F KTT PK+ + P G++ P+ S
Sbjct: 8 DIATMPAQKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKES 67
Query: 65 CAVTVTMQA 73
V ++ A
Sbjct: 68 VNVAISCDA 76
>sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 OS=Caenorhabditis elegans GN=msp-10
PE=2 SV=4
Length = 127
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 4 GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRT 63
GD+ +++ F + + +++ N + + + + +KTTN K+ V P G++ P+
Sbjct: 8 GDIQTQPNAKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 64 SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRV 123
+ + V+ A D D+ + PDGA AK + F + DG +V L +
Sbjct: 68 AVLLAVSCDAFAFGQEDTN-NDRITVEWTNTPDGA-AKQFRREWF-QGDG-MVRRKNLPI 123
Query: 124 VYIP 127
Y P
Sbjct: 124 EYNP 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,240,662
Number of Sequences: 539616
Number of extensions: 3511539
Number of successful extensions: 12534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 12451
Number of HSP's gapped (non-prelim): 91
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)