Query 027355
Match_columns 224
No_of_seqs 205 out of 682
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 100.0 9.8E-30 2.1E-34 209.5 11.1 118 7-126 3-121 (242)
2 KOG0439 VAMP-associated protei 100.0 5.1E-28 1.1E-32 204.8 15.5 131 2-134 4-138 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 7.8E-24 1.7E-28 160.0 11.3 104 7-111 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.7 2.1E-07 4.6E-12 69.3 10.9 70 5-74 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.3 0.01 2.2E-07 45.4 13.1 110 7-129 2-120 (122)
6 PRK10884 SH3 domain-containing 95.9 0.021 4.5E-07 48.3 6.2 61 162-222 130-192 (206)
7 PRK09918 putative fimbrial cha 95.0 1.4 3.1E-05 37.7 14.3 110 6-131 25-139 (230)
8 PRK11385 putativi pili assembl 94.6 1.6 3.4E-05 37.7 13.8 111 6-130 27-149 (236)
9 PRK15249 fimbrial chaperone pr 94.6 1.1 2.4E-05 39.0 12.9 115 6-130 29-154 (253)
10 PRK09926 putative chaperone pr 94.4 2.1 4.7E-05 37.0 14.3 116 6-130 26-151 (246)
11 PF14646 MYCBPAP: MYCBP-associ 94.3 0.3 6.5E-06 45.5 9.3 75 13-91 238-325 (426)
12 PRK15211 fimbrial chaperone pr 93.5 4 8.7E-05 35.0 14.0 110 7-129 24-139 (229)
13 PF07610 DUF1573: Protein of u 93.5 0.51 1.1E-05 29.9 6.4 43 28-71 2-45 (45)
14 PRK15299 fimbrial chaperone pr 93.2 4.9 0.00011 34.3 14.0 112 6-130 23-142 (227)
15 PRK15192 fimbrial chaperone Bc 93.0 4.7 0.0001 34.7 13.7 107 7-130 24-144 (234)
16 PRK15246 fimbrial assembly cha 92.6 2.8 6.1E-05 36.0 11.8 115 6-130 11-135 (233)
17 PRK15295 fimbrial assembly cha 91.6 4.3 9.2E-05 34.7 11.7 111 6-129 20-137 (226)
18 PRK15290 lfpB fimbrial chapero 91.3 9 0.00019 33.2 14.4 111 7-129 39-157 (243)
19 PF05957 DUF883: Bacterial pro 91.1 1.7 3.7E-05 31.7 7.7 22 202-223 72-93 (94)
20 PF11614 FixG_C: IG-like fold 91.1 1.1 2.5E-05 33.8 7.0 49 25-73 34-84 (118)
21 PRK15208 long polar fimbrial c 90.2 11 0.00024 32.2 13.6 113 6-130 22-140 (228)
22 PRK15188 fimbrial chaperone pr 90.0 12 0.00025 32.2 14.6 113 6-130 28-146 (228)
23 PF02183 HALZ: Homeobox associ 90.0 1.3 2.8E-05 28.3 5.3 36 159-194 7-42 (45)
24 PF10779 XhlA: Haemolysin XhlA 89.9 1.9 4.2E-05 30.0 6.7 22 201-222 50-71 (71)
25 COG3121 FimC P pilus assembly 89.9 12 0.00026 32.2 13.9 113 7-131 29-148 (235)
26 PRK15218 fimbrial chaperone pr 89.6 12 0.00026 32.0 14.3 110 8-129 21-140 (226)
27 PRK15195 fimbrial chaperone pr 89.6 12 0.00027 32.0 13.1 114 6-130 26-145 (229)
28 PRK10132 hypothetical protein; 89.2 3.4 7.3E-05 31.4 8.0 22 202-223 85-106 (108)
29 PRK15254 fimbrial chaperone pr 88.7 15 0.00033 31.7 14.2 110 6-129 17-134 (239)
30 PF02344 Myc-LZ: Myc leucine z 87.5 2.2 4.7E-05 25.1 4.6 27 166-192 3-29 (32)
31 smart00340 HALZ homeobox assoc 87.4 1.8 3.9E-05 27.2 4.5 28 166-193 7-34 (44)
32 PRK15224 pili assembly chapero 86.0 15 0.00032 31.7 11.2 112 9-129 32-150 (237)
33 PF15188 CCDC-167: Coiled-coil 85.2 3.1 6.8E-05 30.2 5.6 29 167-195 39-67 (85)
34 COG4575 ElaB Uncharacterized c 85.1 4.6 0.0001 30.4 6.6 21 203-223 83-103 (104)
35 PRK00888 ftsB cell division pr 84.8 2.3 5E-05 32.0 5.0 33 160-192 30-62 (105)
36 PF04977 DivIC: Septum formati 84.6 2.5 5.4E-05 29.3 4.8 31 161-191 21-51 (80)
37 PF06280 DUF1034: Fn3-like dom 84.5 3.2 6.8E-05 31.1 5.7 53 22-74 8-81 (112)
38 PF04420 CHD5: CHD5-like prote 84.0 1.5 3.2E-05 35.6 3.9 37 161-197 44-92 (161)
39 PF06005 DUF904: Protein of un 83.6 4.3 9.3E-05 28.5 5.6 31 161-191 15-45 (72)
40 PF05377 FlaC_arch: Flagella a 83.4 4.9 0.00011 26.8 5.4 35 160-194 3-37 (55)
41 PRK15253 putative fimbrial ass 83.3 28 0.00061 30.1 11.7 109 9-129 37-155 (242)
42 PRK15274 putative periplasmic 82.3 30 0.00064 30.3 11.5 83 9-96 30-120 (257)
43 TIGR03079 CH4_NH3mon_ox_B meth 81.5 3.7 8.1E-05 37.6 5.7 55 20-74 280-355 (399)
44 PRK15233 putative fimbrial cha 80.7 37 0.00081 29.5 11.7 112 12-129 47-164 (246)
45 PF01166 TSC22: TSC-22/dip/bun 80.7 5 0.00011 27.0 4.7 33 164-196 14-46 (59)
46 PF06156 DUF972: Protein of un 80.5 4.5 9.7E-05 30.7 5.1 32 162-193 20-51 (107)
47 PF06005 DUF904: Protein of un 79.4 6.8 0.00015 27.5 5.4 30 162-191 23-52 (72)
48 PF07716 bZIP_2: Basic region 78.5 7.4 0.00016 25.4 5.1 30 163-192 24-53 (54)
49 PRK14127 cell division protein 78.3 7.2 0.00016 29.7 5.6 37 159-195 32-68 (109)
50 PF07334 IFP_35_N: Interferon- 77.6 5.1 0.00011 28.5 4.3 28 166-193 2-29 (76)
51 PRK01844 hypothetical protein; 77.5 1.8 3.8E-05 30.5 1.9 19 204-222 7-25 (72)
52 PRK10404 hypothetical protein; 77.0 25 0.00055 26.3 8.2 21 203-223 80-100 (101)
53 PF00170 bZIP_1: bZIP transcri 76.6 11 0.00024 25.3 5.7 28 165-192 27-54 (64)
54 PRK15285 putative fimbrial cha 76.6 50 0.0011 28.7 14.1 106 10-129 30-143 (250)
55 PRK00523 hypothetical protein; 76.4 2.1 4.5E-05 30.1 2.0 21 202-222 6-26 (72)
56 PRK10884 SH3 domain-containing 75.9 8.4 0.00018 32.6 6.0 58 161-221 136-195 (206)
57 PF10633 NPCBM_assoc: NPCBM-as 75.6 4.9 0.00011 28.0 3.9 54 21-74 4-61 (78)
58 smart00338 BRLZ basic region l 75.5 12 0.00025 25.3 5.6 28 165-192 27-54 (65)
59 PRK13169 DNA replication intia 75.0 9.3 0.0002 29.1 5.4 30 161-190 26-55 (110)
60 smart00338 BRLZ basic region l 74.6 10 0.00022 25.6 5.1 34 160-193 29-62 (65)
61 KOG4343 bZIP transcription fac 73.7 12 0.00026 36.0 6.9 31 163-193 308-338 (655)
62 PF06156 DUF972: Protein of un 73.5 8.5 0.00018 29.1 4.9 35 158-192 23-57 (107)
63 PF01166 TSC22: TSC-22/dip/bun 73.2 7.8 0.00017 26.1 4.0 31 156-186 13-43 (59)
64 PF05506 DUF756: Domain of unk 73.2 15 0.00032 26.3 6.0 41 24-71 20-65 (89)
65 TIGR03752 conj_TIGR03752 integ 72.9 9.2 0.0002 36.3 5.9 36 159-194 61-96 (472)
66 TIGR02209 ftsL_broad cell divi 72.9 9.7 0.00021 26.8 4.9 31 161-191 28-58 (85)
67 PF00170 bZIP_1: bZIP transcri 72.1 13 0.00029 24.9 5.2 34 160-193 29-62 (64)
68 PF04744 Monooxygenase_B: Mono 71.9 19 0.00042 33.1 7.5 65 7-73 249-335 (381)
69 PRK13169 DNA replication intia 71.8 9.6 0.00021 29.1 4.8 35 161-195 19-53 (110)
70 smart00809 Alpha_adaptinC2 Ada 71.7 18 0.00039 26.2 6.3 53 21-73 17-73 (104)
71 PF13807 GNVR: G-rich domain o 70.6 34 0.00074 24.0 8.6 27 165-191 5-31 (82)
72 PF02753 PapD_C: Pili assembly 70.5 4 8.6E-05 27.7 2.3 44 28-71 1-45 (68)
73 PRK00523 hypothetical protein; 69.7 5.3 0.00012 28.1 2.8 20 203-222 3-22 (72)
74 PRK09413 IS2 repressor TnpA; R 68.4 12 0.00026 28.5 4.9 27 168-194 75-101 (121)
75 PF04728 LPP: Lipoprotein leuc 67.7 22 0.00047 23.8 5.2 9 178-186 17-25 (56)
76 PF14257 DUF4349: Domain of un 67.2 33 0.00073 29.5 8.0 30 165-194 163-192 (262)
77 PF14197 Cep57_CLD_2: Centroso 66.5 17 0.00037 25.3 4.8 15 178-192 47-61 (69)
78 PF12709 Kinetocho_Slk19: Cent 66.3 18 0.00039 26.4 5.0 31 163-193 48-78 (87)
79 COG3074 Uncharacterized protei 66.0 20 0.00044 25.1 5.0 28 161-188 15-42 (79)
80 PF07716 bZIP_2: Basic region 65.9 17 0.00037 23.6 4.6 26 161-186 29-54 (54)
81 COG3763 Uncharacterized protei 65.8 7.4 0.00016 27.2 2.8 19 204-222 7-25 (71)
82 PF00927 Transglut_C: Transglu 65.8 22 0.00048 26.1 5.7 55 20-74 13-77 (107)
83 PF12325 TMF_TATA_bd: TATA ele 64.9 19 0.00042 27.8 5.3 33 159-191 18-50 (120)
84 PF07407 Seadorna_VP6: Seadorn 64.0 11 0.00025 34.1 4.4 26 167-192 35-60 (420)
85 PRK15422 septal ring assembly 63.6 21 0.00046 25.5 4.9 30 160-189 14-43 (79)
86 TIGR02894 DNA_bind_RsfA transc 63.5 20 0.00043 29.2 5.3 32 162-193 102-133 (161)
87 PF00957 Synaptobrevin: Synapt 63.2 19 0.00041 25.7 4.8 14 177-190 37-50 (89)
88 PRK14143 heat shock protein Gr 62.7 37 0.00079 29.4 7.2 38 159-196 69-106 (238)
89 PF10482 CtIP_N: Tumour-suppre 62.7 11 0.00025 28.8 3.6 26 162-187 94-119 (120)
90 PF02183 HALZ: Homeobox associ 61.4 34 0.00074 21.7 5.1 32 163-194 4-35 (45)
91 PF11611 DUF4352: Domain of un 61.2 37 0.00081 25.0 6.3 52 21-72 35-100 (123)
92 KOG3119 Basic region leucine z 60.1 21 0.00045 31.4 5.3 35 161-195 219-253 (269)
93 PF06305 DUF1049: Protein of u 59.3 11 0.00024 25.3 2.8 25 167-191 44-68 (68)
94 PF00553 CBM_2: Cellulose bind 59.2 26 0.00057 25.7 5.1 50 24-73 15-84 (101)
95 KOG4196 bZIP transcription fac 59.1 20 0.00043 28.1 4.4 25 168-192 78-102 (135)
96 PRK14163 heat shock protein Gr 58.7 67 0.0015 27.4 8.0 38 159-196 42-79 (214)
97 PF09753 Use1: Membrane fusion 58.4 68 0.0015 27.6 8.2 14 200-213 226-239 (251)
98 COG3074 Uncharacterized protei 58.4 20 0.00043 25.1 3.9 21 166-186 41-61 (79)
99 PF03980 Nnf1: Nnf1 ; InterPr 58.2 22 0.00047 26.5 4.5 31 162-192 78-108 (109)
100 COG4467 Regulator of replicati 58.1 30 0.00065 26.3 5.1 33 162-194 20-52 (114)
101 KOG4797 Transcriptional regula 58.1 29 0.00063 26.4 5.0 34 162-195 65-98 (123)
102 PF04201 TPD52: Tumour protein 58.1 38 0.00082 27.6 6.1 36 159-194 31-66 (162)
103 PF07798 DUF1640: Protein of u 57.2 68 0.0015 26.1 7.7 14 207-220 160-173 (177)
104 PF13544 N_methyl_2: Type IV p 57.1 13 0.00027 21.6 2.4 19 197-215 11-29 (31)
105 PF04880 NUDE_C: NUDE protein, 56.8 7.4 0.00016 31.9 1.8 21 167-187 27-47 (166)
106 PRK13922 rod shape-determining 56.8 27 0.00058 30.3 5.5 35 161-195 73-110 (276)
107 PRK00888 ftsB cell division pr 56.8 27 0.00058 26.2 4.8 28 159-186 36-63 (105)
108 COG2991 Uncharacterized protei 56.6 12 0.00025 26.4 2.5 22 202-223 4-26 (77)
109 PF04977 DivIC: Septum formati 56.4 30 0.00065 23.7 4.8 23 161-183 28-50 (80)
110 PF03173 CHB_HEX: Putative car 55.9 15 0.00033 29.9 3.5 34 40-73 69-104 (164)
111 TIGR02449 conserved hypothetic 55.7 54 0.0012 22.6 5.7 33 161-193 11-43 (65)
112 PF04999 FtsL: Cell division p 55.7 30 0.00066 25.0 4.9 31 161-191 39-69 (97)
113 PF08172 CASP_C: CASP C termin 55.7 28 0.0006 30.3 5.3 33 160-192 89-121 (248)
114 PF10883 DUF2681: Protein of u 55.4 32 0.00069 25.1 4.8 22 167-188 26-47 (87)
115 PF07106 TBPIP: Tat binding pr 55.1 32 0.00069 27.7 5.3 32 161-192 76-107 (169)
116 PF12808 Mto2_bdg: Micro-tubul 54.9 27 0.00059 23.0 3.9 22 171-192 29-50 (52)
117 PRK15308 putative fimbrial pro 54.8 1.4E+02 0.003 25.7 10.8 83 6-96 17-117 (234)
118 PF04728 LPP: Lipoprotein leuc 54.8 54 0.0012 21.9 5.4 28 161-188 7-34 (56)
119 PRK00720 tatA twin arginine tr 54.8 13 0.00028 26.6 2.6 18 200-217 2-19 (78)
120 cd07429 Cby_like Chibby, a nuc 54.4 34 0.00073 26.0 4.9 30 165-194 73-102 (108)
121 KOG4196 bZIP transcription fac 54.3 40 0.00088 26.5 5.4 33 161-193 78-110 (135)
122 TIGR02745 ccoG_rdxA_fixG cytoc 53.8 88 0.0019 29.5 8.7 51 23-73 347-399 (434)
123 TIGR02449 conserved hypothetic 53.7 59 0.0013 22.4 5.6 31 162-192 5-35 (65)
124 PF13815 Dzip-like_N: Iguana/D 53.7 42 0.00091 25.5 5.5 33 161-193 84-116 (118)
125 PF06612 DUF1146: Protein of u 53.3 11 0.00024 24.3 1.9 15 208-222 30-44 (48)
126 PRK02898 cobalt transport prot 53.2 8.4 0.00018 28.9 1.5 22 202-223 67-88 (100)
127 PRK14139 heat shock protein Gr 53.1 75 0.0016 26.4 7.3 38 159-196 34-71 (185)
128 PRK04561 tatA twin arginine tr 52.8 15 0.00032 26.1 2.6 18 200-217 2-19 (75)
129 PF07888 CALCOCO1: Calcium bin 52.7 2.3E+02 0.005 27.6 13.0 70 19-92 17-95 (546)
130 PF02883 Alpha_adaptinC2: Adap 52.6 40 0.00087 24.9 5.2 53 21-73 23-79 (115)
131 smart00637 CBD_II CBD_II domai 52.0 74 0.0016 22.6 6.4 24 48-71 50-75 (92)
132 COG5547 Small integral membran 51.8 15 0.00033 24.7 2.4 21 204-224 32-52 (62)
133 PF11120 DUF2636: Protein of u 51.6 12 0.00026 25.6 1.9 17 207-223 10-26 (62)
134 PF04678 DUF607: Protein of un 51.1 60 0.0013 26.6 6.4 29 166-194 59-87 (180)
135 PF03908 Sec20: Sec20; InterP 50.6 92 0.002 22.4 7.8 16 208-223 75-90 (92)
136 PF13473 Cupredoxin_1: Cupredo 50.3 80 0.0017 22.9 6.5 52 8-71 31-82 (104)
137 PRK15422 septal ring assembly 50.3 48 0.001 23.7 4.8 19 170-188 45-63 (79)
138 PRK09413 IS2 repressor TnpA; R 48.6 41 0.0009 25.5 4.8 33 161-193 75-107 (121)
139 PF14645 Chibby: Chibby family 48.4 36 0.00078 26.1 4.3 29 165-193 72-100 (116)
140 PRK02958 tatA twin arginine tr 48.2 19 0.00041 25.4 2.5 18 200-217 2-19 (73)
141 PF15058 Speriolin_N: Sperioli 48.0 25 0.00053 29.5 3.6 29 161-189 9-37 (200)
142 PF12690 BsuPI: Intracellular 47.9 99 0.0021 22.0 6.4 20 25-44 3-22 (82)
143 PF05308 Mito_fiss_reg: Mitoch 47.1 27 0.00058 30.5 3.9 23 161-183 119-141 (253)
144 PRK14162 heat shock protein Gr 47.0 1E+02 0.0023 25.8 7.2 38 159-196 41-78 (194)
145 PF04880 NUDE_C: NUDE protein, 46.6 9.3 0.0002 31.3 0.9 24 171-194 24-47 (166)
146 PRK14153 heat shock protein Gr 46.4 31 0.00067 28.9 4.0 35 161-195 37-71 (194)
147 KOG4005 Transcription factor X 45.2 52 0.0011 28.6 5.2 16 165-180 98-113 (292)
148 PF09006 Surfac_D-trimer: Lung 45.0 78 0.0017 20.3 4.7 27 167-193 2-28 (46)
149 PRK10803 tol-pal system protei 44.9 48 0.001 28.9 5.2 31 161-191 58-88 (263)
150 PRK14127 cell division protein 44.7 77 0.0017 24.1 5.6 30 160-189 40-69 (109)
151 PF14235 DUF4337: Domain of un 44.5 1.5E+02 0.0033 23.8 7.6 25 162-186 71-95 (157)
152 PF02404 SCF: Stem cell factor 44.2 7.5 0.00016 34.0 0.0 22 201-222 212-233 (273)
153 PF13600 DUF4140: N-terminal d 43.6 61 0.0013 23.6 4.9 27 166-192 72-98 (104)
154 PRK14161 heat shock protein Gr 43.6 59 0.0013 26.8 5.2 36 161-196 23-58 (178)
155 TIGR03142 cytochro_ccmI cytoch 43.4 1.2E+02 0.0026 22.9 6.6 27 163-189 42-71 (117)
156 PF06645 SPC12: Microsomal sig 43.3 24 0.00051 24.9 2.5 18 205-222 15-32 (76)
157 PF10031 DUF2273: Small integr 43.3 29 0.00064 22.6 2.7 19 204-222 32-50 (51)
158 PF05753 TRAP_beta: Translocon 43.0 1.4E+02 0.003 24.6 7.3 53 20-73 36-97 (181)
159 PRK14155 heat shock protein Gr 42.7 56 0.0012 27.7 5.1 36 161-196 17-52 (208)
160 TIGR03752 conj_TIGR03752 integ 42.5 45 0.00098 31.7 4.8 27 159-185 68-94 (472)
161 PF09640 DUF2027: Domain of un 42.3 48 0.001 27.0 4.3 67 24-97 18-84 (162)
162 PF11461 RILP: Rab interacting 42.2 67 0.0015 21.8 4.4 32 166-197 5-36 (60)
163 PRK14154 heat shock protein Gr 42.2 67 0.0015 27.2 5.4 38 159-196 54-91 (208)
164 PF11772 EpuA: DNA-directed RN 42.2 16 0.00035 23.5 1.3 14 207-220 8-21 (47)
165 PRK14158 heat shock protein Gr 42.1 99 0.0021 25.9 6.4 37 160-196 43-79 (194)
166 PF07407 Seadorna_VP6: Seadorn 42.0 28 0.00061 31.6 3.2 27 162-188 37-63 (420)
167 KOG3156 Uncharacterized membra 41.8 70 0.0015 27.3 5.4 34 161-194 105-139 (220)
168 PF08606 Prp19: Prp19/Pso4-lik 41.6 85 0.0019 22.0 4.9 31 165-195 9-39 (70)
169 PF12958 DUF3847: Protein of u 41.3 91 0.002 22.7 5.3 32 159-190 3-34 (86)
170 TIGR02532 IV_pilin_GFxxxE prep 41.1 51 0.0011 18.2 3.1 20 200-219 2-22 (26)
171 PF10224 DUF2205: Predicted co 41.0 86 0.0019 22.5 5.1 18 168-185 41-58 (80)
172 PRK14140 heat shock protein Gr 41.0 69 0.0015 26.8 5.3 39 158-196 38-76 (191)
173 PF10473 CENP-F_leu_zip: Leuci 40.9 73 0.0016 25.3 5.2 32 161-192 49-80 (140)
174 PF10458 Val_tRNA-synt_C: Valy 40.6 66 0.0014 21.7 4.3 26 170-195 3-28 (66)
175 PRK14151 heat shock protein Gr 40.5 83 0.0018 25.9 5.6 35 161-195 24-58 (176)
176 PF14962 AIF-MLS: Mitochondria 40.4 9.3 0.0002 31.6 0.0 36 189-224 29-66 (180)
177 PF01105 EMP24_GP25L: emp24/gp 40.1 7.4 0.00016 30.7 -0.6 22 201-222 158-179 (183)
178 PF06030 DUF916: Bacterial pro 40.0 65 0.0014 24.7 4.7 29 17-45 22-50 (121)
179 TIGR02327 int_mem_ywzB conserv 39.7 20 0.00044 24.9 1.6 15 208-222 37-51 (68)
180 PRK01833 tatA twin arginine tr 39.4 31 0.00068 24.4 2.5 18 200-217 2-19 (74)
181 PRK04406 hypothetical protein; 39.2 1E+02 0.0022 21.7 5.2 30 165-194 26-55 (75)
182 PF13600 DUF4140: N-terminal d 39.1 80 0.0017 23.0 4.9 32 159-190 72-103 (104)
183 PRK14147 heat shock protein Gr 38.9 89 0.0019 25.6 5.6 36 161-196 22-57 (172)
184 PHA03155 hypothetical protein; 38.8 47 0.001 25.5 3.6 22 167-188 11-32 (115)
185 PRK14144 heat shock protein Gr 38.7 95 0.0021 26.1 5.8 38 159-196 47-84 (199)
186 PF14197 Cep57_CLD_2: Centroso 38.7 99 0.0021 21.4 5.0 21 171-191 47-67 (69)
187 PF11382 DUF3186: Protein of u 38.6 46 0.001 29.7 4.2 25 165-189 40-64 (308)
188 COG2919 Septum formation initi 38.5 73 0.0016 24.2 4.7 29 163-191 56-84 (117)
189 PRK13922 rod shape-determining 38.4 74 0.0016 27.5 5.4 26 165-190 70-95 (276)
190 PF07705 CARDB: CARDB; InterP 38.0 1E+02 0.0022 21.5 5.2 54 21-74 18-72 (101)
191 TIGR02209 ftsL_broad cell divi 37.9 99 0.0021 21.5 5.1 29 166-194 26-54 (85)
192 PF04111 APG6: Autophagy prote 37.9 82 0.0018 28.2 5.7 28 162-189 62-89 (314)
193 TIGR01165 cbiN cobalt transpor 37.8 10 0.00022 27.9 -0.2 23 201-223 66-88 (91)
194 COG3883 Uncharacterized protei 37.7 1.1E+02 0.0024 27.0 6.2 31 161-191 63-93 (265)
195 PF05529 Bap31: B-cell recepto 37.6 41 0.00088 27.6 3.4 27 167-193 157-183 (192)
196 PRK14146 heat shock protein Gr 37.6 80 0.0017 26.9 5.2 36 161-196 58-93 (215)
197 PRK02793 phi X174 lysis protei 37.5 1.1E+02 0.0024 21.2 5.2 31 165-195 23-53 (72)
198 PF07963 N_methyl: Prokaryotic 37.3 47 0.001 17.5 2.4 16 201-216 2-18 (20)
199 PHA02414 hypothetical protein 37.3 1.6E+02 0.0036 22.0 6.1 48 175-222 61-108 (111)
200 PRK14148 heat shock protein Gr 36.6 85 0.0018 26.3 5.2 38 159-196 42-79 (195)
201 PRK15249 fimbrial chaperone pr 36.5 84 0.0018 27.2 5.4 43 26-69 176-219 (253)
202 COG2433 Uncharacterized conser 36.5 74 0.0016 31.3 5.3 32 161-192 426-457 (652)
203 PF12711 Kinesin-relat_1: Kine 36.4 1.2E+02 0.0026 22.1 5.3 33 161-193 28-66 (86)
204 PRK10722 hypothetical protein; 36.3 99 0.0021 26.9 5.6 32 163-194 164-199 (247)
205 KOG1691 emp24/gp25L/p24 family 36.3 1.4E+02 0.0029 25.5 6.3 49 159-207 136-186 (210)
206 TIGR00219 mreC rod shape-deter 36.2 88 0.0019 27.6 5.5 13 183-195 96-108 (283)
207 PF05812 Herpes_BLRF2: Herpesv 36.0 72 0.0016 24.6 4.3 23 166-188 5-27 (118)
208 PF11544 Spc42p: Spindle pole 36.0 1.4E+02 0.0031 21.2 5.4 34 160-193 22-55 (76)
209 PHA03162 hypothetical protein; 36.0 54 0.0012 25.8 3.6 21 167-187 16-36 (135)
210 PRK14141 heat shock protein Gr 36.0 82 0.0018 26.7 5.0 35 161-195 35-69 (209)
211 KOG4657 Uncharacterized conser 36.0 56 0.0012 28.1 4.0 33 163-195 92-124 (246)
212 PRK03625 tatE twin arginine tr 35.9 39 0.00084 23.4 2.5 18 200-217 2-19 (67)
213 PRK14160 heat shock protein Gr 35.8 98 0.0021 26.3 5.5 35 161-195 65-99 (211)
214 COG1930 CbiN ABC-type cobalt t 35.8 9.9 0.00021 28.0 -0.5 21 202-222 65-85 (97)
215 COG1422 Predicted membrane pro 35.2 1E+02 0.0022 26.0 5.4 20 161-180 76-95 (201)
216 PF04102 SlyX: SlyX; InterPro 35.2 1.3E+02 0.0029 20.5 5.2 31 165-195 19-49 (69)
217 PRK01470 tatA twin arginine tr 35.0 41 0.00088 22.0 2.4 17 201-217 2-18 (51)
218 PF07233 DUF1425: Protein of u 34.8 1.8E+02 0.0038 21.1 6.6 48 21-68 23-77 (94)
219 PF09716 ETRAMP: Malarial earl 34.4 93 0.002 22.3 4.5 23 201-223 57-79 (84)
220 PF12329 TMF_DNA_bd: TATA elem 34.2 1.6E+02 0.0035 20.5 5.7 33 161-193 37-69 (74)
221 PF11853 DUF3373: Protein of u 34.2 36 0.00079 32.5 2.9 20 172-191 32-51 (489)
222 COG3937 Uncharacterized conser 34.0 46 0.001 25.2 2.8 23 166-188 85-107 (108)
223 PF07798 DUF1640: Protein of u 33.7 1.1E+02 0.0025 24.7 5.5 17 175-191 77-93 (177)
224 PRK02119 hypothetical protein; 33.5 1.4E+02 0.0031 20.8 5.2 30 165-194 24-53 (73)
225 PF14802 TMEM192: TMEM192 fami 33.5 1.5E+02 0.0032 25.7 6.3 25 166-190 211-235 (236)
226 COG4026 Uncharacterized protei 33.4 1.1E+02 0.0025 26.4 5.4 31 161-191 139-169 (290)
227 PF05529 Bap31: B-cell recepto 33.3 94 0.002 25.4 5.0 30 162-191 159-188 (192)
228 PRK05771 V-type ATP synthase s 33.3 73 0.0016 31.3 5.0 35 159-193 95-129 (646)
229 COG3121 FimC P pilus assembly 33.1 89 0.0019 26.8 4.9 43 26-70 165-209 (235)
230 PRK11637 AmiB activator; Provi 33.0 1.1E+02 0.0024 28.4 5.9 24 165-188 97-120 (428)
231 PF11906 DUF3426: Protein of u 33.0 1.6E+02 0.0034 22.8 6.0 27 46-72 107-135 (149)
232 PRK00736 hypothetical protein; 33.0 1.5E+02 0.0031 20.4 5.1 30 165-194 20-49 (68)
233 PF14796 AP3B1_C: Clathrin-ada 33.0 1.4E+02 0.0031 23.8 5.7 50 22-71 85-138 (145)
234 PF09125 COX2-transmemb: Cytoc 32.9 1.2E+02 0.0026 18.5 4.3 18 206-223 20-37 (38)
235 PF12751 Vac7: Vacuolar segreg 32.9 28 0.0006 32.2 1.8 24 201-224 304-327 (387)
236 PRK14157 heat shock protein Gr 32.9 1E+02 0.0022 26.5 5.1 36 161-196 81-116 (227)
237 TIGR02894 DNA_bind_RsfA transc 32.8 1.2E+02 0.0026 24.7 5.2 19 165-183 112-130 (161)
238 PF09889 DUF2116: Uncharacteri 32.7 66 0.0014 21.7 3.2 14 203-216 40-53 (59)
239 PF04111 APG6: Autophagy prote 32.6 1.1E+02 0.0023 27.5 5.6 19 165-183 51-69 (314)
240 PF12097 DUF3573: Protein of u 32.6 70 0.0015 29.3 4.2 24 170-193 41-64 (383)
241 PF10146 zf-C4H2: Zinc finger- 32.4 1.1E+02 0.0025 26.2 5.4 29 161-189 36-64 (230)
242 KOG4010 Coiled-coil protein TP 32.4 1.3E+02 0.0028 25.2 5.5 34 160-193 47-80 (208)
243 PF09489 CbtB: Probable cobalt 32.4 54 0.0012 21.7 2.7 20 203-222 12-31 (54)
244 PF09738 DUF2051: Double stran 32.4 76 0.0017 28.4 4.5 31 165-195 220-250 (302)
245 PF08826 DMPK_coil: DMPK coile 32.3 1.6E+02 0.0035 19.9 5.3 17 176-192 37-53 (61)
246 PF11859 DUF3379: Protein of u 32.1 1.4E+02 0.003 25.8 5.9 23 200-222 75-97 (232)
247 PF05103 DivIVA: DivIVA protei 31.8 44 0.00096 25.2 2.6 28 164-191 25-52 (131)
248 PF06483 ChiC: Chitinase C; I 31.8 55 0.0012 27.1 3.2 25 36-71 116-140 (180)
249 COG2433 Uncharacterized conser 31.7 1.1E+02 0.0023 30.2 5.6 36 159-194 431-466 (652)
250 PF10224 DUF2205: Predicted co 31.7 94 0.002 22.3 4.0 25 168-192 34-58 (80)
251 PF11446 DUF2897: Protein of u 31.7 44 0.00096 22.2 2.2 16 206-221 6-21 (55)
252 PF04201 TPD52: Tumour protein 31.7 79 0.0017 25.8 4.0 23 171-193 29-51 (162)
253 PF05377 FlaC_arch: Flagella a 31.6 1.6E+02 0.0035 19.6 4.8 29 161-189 11-39 (55)
254 PF11668 Gp_UL130: HCMV glycop 31.6 1.1E+02 0.0024 24.6 4.8 43 14-56 102-154 (156)
255 PF13808 DDE_Tnp_1_assoc: DDE_ 31.3 55 0.0012 23.6 2.8 20 200-219 17-36 (90)
256 PF10342 GPI-anchored: Ser-Thr 31.1 1.8E+02 0.0039 20.1 7.2 58 12-70 15-77 (93)
257 PF15058 Speriolin_N: Sperioli 31.1 1.2E+02 0.0025 25.6 5.0 28 166-193 7-34 (200)
258 COG4499 Predicted membrane pro 31.0 69 0.0015 29.8 4.0 13 209-221 227-239 (434)
259 PF13205 Big_5: Bacterial Ig-l 30.9 2E+02 0.0042 20.4 7.2 56 13-71 26-84 (107)
260 PF07412 Geminin: Geminin; In 30.9 74 0.0016 26.8 3.9 27 162-188 123-149 (200)
261 PF06738 DUF1212: Protein of u 30.8 1.2E+02 0.0026 24.6 5.1 13 181-193 85-97 (193)
262 PF07412 Geminin: Geminin; In 30.8 81 0.0017 26.6 4.1 24 162-185 130-153 (200)
263 PF04340 DUF484: Protein of un 30.7 67 0.0015 27.0 3.7 26 170-195 46-71 (225)
264 PRK14156 heat shock protein Gr 30.7 1.1E+02 0.0023 25.3 4.8 34 162-195 32-65 (177)
265 PRK00295 hypothetical protein; 30.6 1.6E+02 0.0034 20.2 4.9 29 165-193 20-48 (68)
266 PRK04325 hypothetical protein; 30.6 1.8E+02 0.0038 20.3 5.2 30 165-194 24-53 (74)
267 PF10458 Val_tRNA-synt_C: Valy 30.5 1.3E+02 0.0027 20.3 4.4 26 163-188 3-28 (66)
268 COG3883 Uncharacterized protei 29.7 1.3E+02 0.0027 26.6 5.3 31 164-194 59-89 (265)
269 cd06409 PB1_MUG70 The MUG70 pr 29.7 35 0.00076 24.8 1.6 22 39-60 2-25 (86)
270 KOG3156 Uncharacterized membra 29.7 2.2E+02 0.0047 24.4 6.4 40 182-221 178-217 (220)
271 TIGR03024 arch_pef_cterm PEF-C 29.6 77 0.0017 17.8 2.6 16 202-217 4-19 (26)
272 PRK10265 chaperone-modulator p 29.6 1.4E+02 0.003 22.0 4.9 29 161-189 68-96 (101)
273 PF07664 FeoB_C: Ferrous iron 29.6 63 0.0014 21.0 2.7 16 208-223 7-22 (54)
274 COG4467 Regulator of replicati 29.6 1E+02 0.0022 23.5 4.0 31 159-189 24-54 (114)
275 PF11932 DUF3450: Protein of u 29.5 1.3E+02 0.0027 25.8 5.3 23 166-188 44-66 (251)
276 PF06632 XRCC4: DNA double-str 29.3 1.4E+02 0.0031 27.2 5.8 33 160-192 133-165 (342)
277 TIGR01411 tatAE twin arginine- 29.3 59 0.0013 20.8 2.4 15 202-216 2-16 (47)
278 PF05103 DivIVA: DivIVA protei 29.2 27 0.00059 26.5 1.0 34 159-192 27-60 (131)
279 COG2882 FliJ Flagellar biosynt 28.9 1.4E+02 0.0031 23.9 5.1 47 159-205 18-64 (148)
280 PF12443 AKNA: AT-hook-contain 28.9 99 0.0021 23.4 3.9 31 166-196 47-77 (106)
281 PTZ00454 26S protease regulato 28.9 1.1E+02 0.0023 28.5 5.0 30 163-192 35-64 (398)
282 PF11180 DUF2968: Protein of u 28.9 1.6E+02 0.0034 24.7 5.5 35 161-195 151-185 (192)
283 KOG0977 Nuclear envelope prote 28.8 1E+02 0.0022 29.9 5.0 34 161-194 159-192 (546)
284 PRK14872 rod shape-determining 28.7 99 0.0021 28.2 4.6 25 165-189 58-82 (337)
285 KOG4343 bZIP transcription fac 28.7 1.8E+02 0.0039 28.4 6.4 33 163-195 301-333 (655)
286 TIGR03007 pepcterm_ChnLen poly 28.5 3.4E+02 0.0073 25.4 8.5 17 57-73 114-130 (498)
287 PF10226 DUF2216: Uncharacteri 28.4 1.5E+02 0.0033 24.8 5.2 25 168-192 52-76 (195)
288 TIGR03592 yidC_oxa1_cterm memb 28.3 2.6E+02 0.0056 22.6 6.8 16 178-193 47-62 (181)
289 PRK13673 hypothetical protein; 28.3 1.1E+02 0.0023 23.6 4.1 34 186-221 78-111 (118)
290 KOG4797 Transcriptional regula 28.2 1.1E+02 0.0023 23.4 4.0 26 168-193 64-89 (123)
291 PRK07857 hypothetical protein; 28.0 1.9E+02 0.0041 21.9 5.3 37 158-194 29-65 (106)
292 PF11382 DUF3186: Protein of u 27.8 1.2E+02 0.0026 27.0 5.0 31 165-195 33-63 (308)
293 PF02687 FtsX: FtsX-like perme 27.8 1.8E+02 0.0039 20.6 5.3 40 182-221 25-65 (121)
294 PRK09039 hypothetical protein; 27.8 1.2E+02 0.0027 27.4 5.1 32 161-192 134-165 (343)
295 PF09680 Tiny_TM_bacill: Prote 27.7 75 0.0016 17.5 2.2 11 200-210 4-14 (24)
296 PF07334 IFP_35_N: Interferon- 27.6 1.4E+02 0.0031 21.2 4.3 31 161-191 4-34 (76)
297 TIGR02656 cyanin_plasto plasto 27.5 2E+02 0.0044 20.7 5.4 61 5-71 10-76 (99)
298 PF09789 DUF2353: Uncharacteri 27.3 1.2E+02 0.0026 27.5 4.8 38 159-196 74-111 (319)
299 PF11688 DUF3285: Protein of u 27.1 1.1E+02 0.0024 19.4 3.3 13 207-219 28-40 (45)
300 PRK15192 fimbrial chaperone Bc 27.1 1.4E+02 0.0031 25.6 5.2 39 27-69 163-202 (234)
301 smart00605 CW CW domain. 27.0 81 0.0018 22.6 3.2 22 27-48 58-80 (94)
302 PF05791 Bacillus_HBL: Bacillu 27.0 3.5E+02 0.0076 22.1 7.4 38 160-197 106-143 (184)
303 PF04102 SlyX: SlyX; InterPro 26.9 1.3E+02 0.0029 20.5 4.1 32 160-191 21-52 (69)
304 PF13314 DUF4083: Domain of un 26.8 74 0.0016 21.4 2.6 18 203-220 5-22 (58)
305 COG1792 MreC Cell shape-determ 26.7 92 0.002 27.5 4.0 23 166-188 85-107 (284)
306 PRK02119 hypothetical protein; 26.5 1.8E+02 0.004 20.2 4.8 33 159-191 25-57 (73)
307 PRK00846 hypothetical protein; 26.5 2.1E+02 0.0045 20.3 5.0 30 165-194 28-57 (77)
308 PRK14860 tatA twin arginine tr 26.4 63 0.0014 22.2 2.3 17 201-217 3-19 (64)
309 TIGR01242 26Sp45 26S proteasom 26.3 1.5E+02 0.0032 26.7 5.4 31 161-191 10-40 (364)
310 KOG4005 Transcription factor X 26.3 1.4E+02 0.0029 26.1 4.7 28 166-193 92-119 (292)
311 PRK14859 tatA twin arginine tr 26.2 69 0.0015 21.9 2.4 17 201-217 3-19 (63)
312 TIGR01732 tiny_TM_bacill conse 25.9 50 0.0011 18.6 1.4 11 200-210 6-16 (26)
313 PF00957 Synaptobrevin: Synapt 25.9 2.4E+02 0.0052 19.8 5.8 18 169-186 36-53 (89)
314 cd04766 HTH_HspR Helix-Turn-He 25.8 1.5E+02 0.0032 21.1 4.4 20 175-194 69-88 (91)
315 PF12325 TMF_TATA_bd: TATA ele 25.8 2.1E+02 0.0046 22.0 5.4 20 164-183 37-56 (120)
316 PRK02793 phi X174 lysis protei 25.8 2E+02 0.0042 20.0 4.8 32 160-191 25-56 (72)
317 PRK14145 heat shock protein Gr 25.7 1.7E+02 0.0038 24.5 5.2 38 159-196 47-84 (196)
318 PF07106 TBPIP: Tat binding pr 25.7 1.4E+02 0.0031 23.8 4.7 13 179-191 117-129 (169)
319 PF10883 DUF2681: Protein of u 25.7 2.3E+02 0.0051 20.6 5.3 31 161-191 27-57 (87)
320 PRK14149 heat shock protein Gr 25.6 1.5E+02 0.0032 24.8 4.8 31 165-195 44-74 (191)
321 PF06698 DUF1192: Protein of u 25.6 1.4E+02 0.0031 20.1 3.9 18 159-176 23-40 (59)
322 PRK00295 hypothetical protein; 25.3 2.3E+02 0.005 19.4 5.1 32 160-191 22-53 (68)
323 PF04999 FtsL: Cell division p 25.1 2E+02 0.0043 20.6 5.0 30 165-194 36-65 (97)
324 KOG1769 Ubiquitin-like protein 25.0 1.1E+02 0.0024 22.9 3.5 24 24-47 19-42 (99)
325 COG0598 CorA Mg2+ and Co2+ tra 25.0 4.5E+02 0.0098 23.3 8.2 21 201-222 297-317 (322)
326 PF13863 DUF4200: Domain of un 25.0 2E+02 0.0044 21.5 5.2 29 163-191 80-108 (126)
327 PRK01203 prefoldin subunit alp 24.9 1.4E+02 0.0031 23.4 4.3 21 165-185 8-28 (130)
328 PF11346 DUF3149: Protein of u 24.8 77 0.0017 19.9 2.3 16 208-223 21-36 (42)
329 KOG4571 Activating transcripti 24.8 1.7E+02 0.0038 26.1 5.3 24 169-192 253-276 (294)
330 KOG4591 Uncharacterized conser 24.8 1.9E+02 0.0041 24.8 5.2 27 167-193 6-32 (280)
331 PF15294 Leu_zip: Leucine zipp 24.8 1.1E+02 0.0025 27.1 4.1 15 178-192 160-174 (278)
332 PF14077 WD40_alt: Alternative 24.6 98 0.0021 19.9 2.7 22 162-183 16-37 (48)
333 KOG1962 B-cell receptor-associ 24.5 1E+02 0.0022 26.4 3.6 24 168-191 176-199 (216)
334 COG5336 Uncharacterized protei 24.5 73 0.0016 24.3 2.5 21 201-221 71-91 (116)
335 PF13591 MerR_2: MerR HTH fami 24.4 1.1E+02 0.0023 21.7 3.3 24 161-184 60-83 (84)
336 KOG2391 Vacuolar sorting prote 24.3 1.7E+02 0.0036 26.9 5.1 58 7-69 33-99 (365)
337 PRK09926 putative chaperone pr 24.2 2.2E+02 0.0049 24.4 5.9 43 26-70 173-217 (246)
338 PRK09400 secE preprotein trans 24.2 2.3E+02 0.0051 19.1 4.9 6 216-221 48-53 (61)
339 COG4985 ABC-type phosphate tra 24.2 1.3E+02 0.0028 26.2 4.2 30 167-196 217-246 (289)
340 PRK15295 fimbrial assembly cha 24.2 1.6E+02 0.0034 25.1 4.8 39 27-69 158-197 (226)
341 PF10146 zf-C4H2: Zinc finger- 24.1 1.8E+02 0.0039 25.0 5.2 25 169-193 79-103 (230)
342 cd00632 Prefoldin_beta Prefold 24.1 2E+02 0.0043 21.1 4.9 30 164-193 70-99 (105)
343 PF10211 Ax_dynein_light: Axon 24.1 2E+02 0.0044 23.7 5.4 32 161-192 124-155 (189)
344 PRK15246 fimbrial assembly cha 24.0 1.8E+02 0.004 24.9 5.2 39 27-69 154-192 (233)
345 PF04888 SseC: Secretion syste 23.9 4.8E+02 0.01 22.8 8.1 42 178-219 33-75 (306)
346 PF03234 CDC37_N: Cdc37 N term 23.9 2.6E+02 0.0057 23.0 5.9 35 162-196 129-163 (177)
347 TIGR03493 cellullose_BcsF cell 23.9 76 0.0017 21.6 2.2 17 207-223 10-26 (62)
348 PRK14159 heat shock protein Gr 23.8 1.7E+02 0.0037 24.1 4.8 32 164-195 30-61 (176)
349 TIGR02230 ATPase_gene1 F0F1-AT 23.8 99 0.0022 23.1 3.1 10 210-219 80-89 (100)
350 PF08277 PAN_3: PAN-like domai 23.7 98 0.0021 20.6 2.9 19 24-42 53-71 (71)
351 PF13942 Lipoprotein_20: YfhG 23.7 2.5E+02 0.0054 23.2 5.6 34 161-194 116-153 (179)
352 PF12718 Tropomyosin_1: Tropom 23.7 2.3E+02 0.0051 22.3 5.4 34 161-194 25-58 (143)
353 PHA03240 envelope glycoprotein 23.6 81 0.0018 27.1 2.9 23 200-222 210-232 (258)
354 PF00631 G-gamma: GGL domain; 23.6 53 0.0012 22.3 1.5 18 172-189 3-20 (68)
355 PF13815 Dzip-like_N: Iguana/D 23.5 2.3E+02 0.0051 21.3 5.3 32 162-193 78-109 (118)
356 KOG4010 Coiled-coil protein TP 23.5 1.3E+02 0.0028 25.3 3.9 25 171-195 44-68 (208)
357 PF05552 TM_helix: Conserved T 23.5 53 0.0011 21.1 1.4 19 204-222 14-32 (53)
358 TIGR00219 mreC rod shape-deter 23.4 1.5E+02 0.0033 26.1 4.8 14 176-189 96-109 (283)
359 KOG1962 B-cell receptor-associ 23.4 1.8E+02 0.004 24.8 5.0 34 161-194 155-188 (216)
360 PF08078 PsaX: PsaX family; I 23.3 1.4E+02 0.003 18.0 3.0 18 205-222 18-35 (37)
361 PF08781 DP: Transcription fac 23.2 2.1E+02 0.0046 22.7 5.1 21 165-185 2-22 (142)
362 PF06072 Herpes_US9: Alphaherp 23.2 1E+02 0.0022 20.8 2.8 15 208-222 43-57 (60)
363 PF14389 Lzipper-MIP1: Leucine 23.1 2.9E+02 0.0063 19.8 5.5 26 168-193 58-83 (88)
364 PRK00846 hypothetical protein; 23.0 2.5E+02 0.0055 19.9 4.9 32 160-191 30-61 (77)
365 COG1963 Uncharacterized protei 22.9 1.9E+02 0.0041 23.3 4.6 22 201-222 127-148 (153)
366 PF09813 Coiled-coil_56: Coile 22.8 2.3E+02 0.0049 21.2 4.8 13 209-221 55-67 (100)
367 TIGR02459 CbtB cobalt transpor 22.7 1.1E+02 0.0023 20.8 2.8 20 203-222 18-37 (60)
368 TIGR01242 26Sp45 26S proteasom 22.7 1.7E+02 0.0038 26.3 5.2 34 162-195 4-37 (364)
369 KOG3620 Uncharacterized conser 22.6 2.2E+02 0.0047 30.7 6.1 78 6-89 526-609 (1626)
370 PF04639 Baculo_E56: Baculovir 22.5 53 0.0011 29.3 1.6 24 200-223 276-299 (305)
371 PF12606 RELT: Tumour necrosis 22.5 1.1E+02 0.0024 19.9 2.8 16 208-223 11-26 (50)
372 COG3599 DivIVA Cell division i 22.5 3E+02 0.0066 23.3 6.2 29 167-195 33-61 (212)
373 PRK15396 murein lipoprotein; P 22.5 2.4E+02 0.0052 20.1 4.7 27 159-185 27-53 (78)
374 COG1730 GIM5 Predicted prefold 22.4 2E+02 0.0043 23.0 4.8 31 159-189 8-38 (145)
375 PF08041 PetM: PetM family of 22.4 1.3E+02 0.0028 17.7 2.7 15 208-222 11-25 (31)
376 PF11559 ADIP: Afadin- and alp 22.4 2.5E+02 0.0054 21.9 5.4 33 161-193 56-88 (151)
377 COG0576 GrpE Molecular chapero 22.3 1.8E+02 0.004 24.1 4.8 34 163-196 42-75 (193)
378 PRK14011 prefoldin subunit alp 22.2 2.1E+02 0.0046 22.7 4.9 28 165-192 4-31 (144)
379 PF08402 TOBE_2: TOBE domain; 22.2 2.3E+02 0.005 18.3 7.3 65 7-71 1-69 (75)
380 PF07051 OCIA: Ovarian carcino 22.0 51 0.0011 25.2 1.3 14 207-220 78-91 (111)
381 PRK11876 petM cytochrome b6-f 21.9 1.3E+02 0.0028 17.8 2.7 16 208-223 13-28 (32)
382 PF11336 DUF3138: Protein of u 21.9 1.3E+02 0.0029 28.5 4.1 24 165-188 26-49 (514)
383 PF07558 Shugoshin_N: Shugoshi 21.9 1.2E+02 0.0025 19.2 2.8 24 164-187 21-44 (46)
384 PF04576 Zein-binding: Zein-bi 21.7 1.7E+02 0.0037 21.7 3.9 24 160-183 34-57 (94)
385 COG1470 Predicted membrane pro 21.7 7.3E+02 0.016 23.9 10.5 73 19-95 394-470 (513)
386 PF14775 NYD-SP28_assoc: Sperm 21.7 2.6E+02 0.0056 18.7 5.5 19 167-185 36-54 (60)
387 COG4317 Uncharacterized protei 21.6 77 0.0017 23.0 2.0 14 208-221 32-45 (93)
388 PHA00024 IX minor coat protein 21.6 97 0.0021 18.4 2.1 17 206-222 3-19 (33)
389 TIGR01801 CM_A chorismate muta 21.6 3.4E+02 0.0074 20.0 5.8 35 159-193 6-40 (102)
390 PF01004 Flavi_M: Flavivirus e 21.6 83 0.0018 22.3 2.2 13 211-223 43-55 (75)
391 PRK02944 OxaA-like protein pre 21.6 4.5E+02 0.0097 22.7 7.3 13 181-193 111-123 (255)
392 PRK04406 hypothetical protein; 21.6 2.5E+02 0.0055 19.6 4.7 32 160-191 28-59 (75)
393 PRK14164 heat shock protein Gr 21.5 1.8E+02 0.004 24.8 4.7 32 164-195 77-108 (218)
394 TIGR01005 eps_transp_fam exopo 21.5 5.5E+02 0.012 25.6 8.8 15 206-220 433-447 (754)
395 PF14209 DUF4321: Domain of un 21.5 77 0.0017 20.4 1.9 15 208-222 35-49 (49)
396 PF10186 Atg14: UV radiation r 21.5 2.2E+02 0.0048 24.3 5.4 29 163-191 69-97 (302)
397 COG5415 Predicted integral mem 21.4 4.4E+02 0.0095 22.6 6.8 52 163-214 14-79 (251)
398 PF14645 Chibby: Chibby family 21.3 1.4E+02 0.0031 22.7 3.7 22 162-183 76-97 (116)
399 PF01763 Herpes_UL6: Herpesvir 21.3 2.4E+02 0.0052 27.6 5.9 34 161-194 374-407 (557)
400 PF11932 DUF3450: Protein of u 21.3 2.4E+02 0.0051 24.1 5.5 29 161-189 53-81 (251)
401 PF14235 DUF4337: Domain of un 21.2 3.2E+02 0.007 21.9 5.8 28 167-194 69-96 (157)
402 PHA01750 hypothetical protein 20.9 3E+02 0.0065 19.1 5.1 25 169-193 47-71 (75)
403 PRK14750 kdpF potassium-transp 20.8 1.4E+02 0.0031 17.2 2.6 15 208-222 7-21 (29)
404 TIGR01834 PHA_synth_III_E poly 20.8 1.7E+02 0.0037 26.5 4.5 30 163-192 288-317 (320)
405 COG5509 Uncharacterized small 20.8 2E+02 0.0042 19.6 3.7 21 167-187 28-48 (65)
406 PF10211 Ax_dynein_light: Axon 20.7 1.3E+02 0.0028 24.9 3.5 10 85-94 18-27 (189)
407 PRK09546 zntB zinc transporter 20.6 2.7E+02 0.0059 24.6 5.9 16 208-223 305-320 (324)
408 PF08961 DUF1875: Domain of un 20.5 33 0.00072 29.4 0.0 31 161-191 133-163 (243)
409 cd00890 Prefoldin Prefoldin is 20.5 3.1E+02 0.0066 20.3 5.4 37 159-195 1-37 (129)
410 PF11027 DUF2615: Protein of u 20.5 1.5E+02 0.0032 22.3 3.5 23 200-222 51-73 (103)
411 PF11853 DUF3373: Protein of u 20.5 1E+02 0.0022 29.6 3.2 32 163-194 30-61 (489)
412 PF11365 DUF3166: Protein of u 20.4 2.9E+02 0.0063 20.5 5.0 27 168-194 19-45 (96)
413 PRK14861 tatA twin arginine tr 20.4 1.1E+02 0.0023 20.7 2.5 16 201-216 4-19 (61)
414 PHA00649 hypothetical protein 20.3 2.6E+02 0.0056 19.6 4.4 36 178-218 34-69 (83)
415 PRK15224 pili assembly chapero 20.3 2.4E+02 0.0052 24.3 5.3 39 27-69 170-209 (237)
416 PF02403 Seryl_tRNA_N: Seryl-t 20.2 2.6E+02 0.0056 20.4 4.9 33 162-194 27-59 (108)
417 PF06657 Cep57_MT_bd: Centroso 20.2 2.7E+02 0.0058 19.7 4.6 31 161-191 14-44 (79)
418 TIGR01808 CM_M_hiGC-arch monof 20.2 3.1E+02 0.0066 19.0 5.6 34 160-193 3-36 (74)
419 PRK00736 hypothetical protein; 20.2 3E+02 0.0065 18.8 4.9 32 160-191 22-53 (68)
420 PF01486 K-box: K-box region; 20.1 2E+02 0.0043 20.9 4.1 19 173-191 77-95 (100)
421 PF08232 Striatin: Striatin fa 20.1 2.9E+02 0.0062 21.5 5.2 32 161-192 29-60 (134)
422 PF03302 VSP: Giardia variant- 20.0 61 0.0013 30.0 1.6 23 201-223 371-394 (397)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.96 E-value=9.8e-30 Score=209.46 Aligned_cols=118 Identities=40% Similarity=0.632 Sum_probs=109.3
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCC-CCCCCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKD 85 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p-~~~~~kd 85 (224)
|+|+|. +.|..|+....++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+||+.++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 577784 77777999999999999999999999999999999999999999999999999999999998776 6889999
Q ss_pred eEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEe
Q 027355 86 KFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (224)
Q Consensus 86 KFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (224)
|||||++..+...+..|+ +++|...++.-|.+.|+||+|.
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvys 121 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYS 121 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEee
Confidence 999999999987777788 8999998888899999999998
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-28 Score=204.76 Aligned_cols=131 Identities=46% Similarity=0.746 Sum_probs=116.1
Q ss_pred CCCCceEEeC-CeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCC
Q 027355 2 STGDLVNIQP-SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (224)
Q Consensus 2 ~~~~lL~i~P-~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~ 80 (224)
+.+.+|.|+| .+|.|++++++++.+.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|++|++...|.|
T Consensus 4 ~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d 83 (218)
T KOG0439|consen 4 ETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPD 83 (218)
T ss_pred cccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchh
Confidence 4568999999 589999999989999999999999999999999999999999999999999999999999998877999
Q ss_pred CCCCCeEEEEEEecCCCCCcccCCCCcccccC--CCeeeEEEeEEEEe-cCCCCCCC
Q 027355 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKED--GKVVEEFKLRVVYI-PANPPSPV 134 (224)
Q Consensus 81 ~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~--~~~i~~~kL~v~~~-p~~~~s~v 134 (224)
++|+|||+||++.++.+ +..++ .+.|.... +..+.+.+++|.|. |+.+++..
T Consensus 84 ~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~ 138 (218)
T KOG0439|consen 84 FKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVV 138 (218)
T ss_pred hcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcccc
Confidence 88999999999999976 33344 57787666 78899999999999 66555443
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.91 E-value=7.8e-24 Score=159.98 Aligned_cols=104 Identities=42% Similarity=0.669 Sum_probs=82.6
Q ss_pred eEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCC
Q 027355 7 VNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKD 85 (224)
Q Consensus 7 L~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kd 85 (224)
|.|+|. .|.|++++++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789998 69999999999999999999999999999999999999999999999999999999999997654443 2399
Q ss_pred eEEEEEEecCCCCC-cccCCCCccccc
Q 027355 86 KFLLLSVVAPDGAT-AKDIGPDMFTKE 111 (224)
Q Consensus 86 KFlVqs~~~~~~~~-~~d~~~~~f~~~ 111 (224)
||+|+++.++++.. ..+....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 99999999987643 212225677654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.72 E-value=2.1e-07 Score=69.26 Aligned_cols=70 Identities=24% Similarity=0.428 Sum_probs=61.9
Q ss_pred CceEEeCCeeeec-ccCCCceeEEEEEEcCCCCeEEEEEeecC--CCcEEEeCCceeeCCCCeEEEEEEecCC
Q 027355 5 DLVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAFKVKTTN--PKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 5 ~lL~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaFKVKTT~--p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~ 74 (224)
+.|+++|.+|.|- ...+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||++.++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 4689999999994 45678899999999999999999998654 4689999999999999999999999853
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.34 E-value=0.01 Score=45.41 Aligned_cols=110 Identities=23% Similarity=0.321 Sum_probs=73.9
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC---C------CcEEEeCCceeeCCCCeEEEEEEecCCccC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN---P------KKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~---p------~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~ 77 (224)
|.|.|..+.|+. ......++|+|.++.++.+.+.... . ..|.|.|+.-.|+||++..|.|.. .. ..
T Consensus 2 i~i~~trii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~-~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR-GS-KL 76 (122)
T ss_dssp EEESSSEEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE-CS-GS
T ss_pred EEEccEEEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe-cC-CC
Confidence 678898888875 3358899999999999999988775 1 279999999999999999999944 32 23
Q ss_pred CCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
+.+. ..-|.+....+|.... + .+ .+..-.....+.+++.|.|..
T Consensus 77 ~~~~--E~~yrl~~~~iP~~~~--~--~~--~~~~v~i~~~~~i~v~~rP~~ 120 (122)
T PF00345_consen 77 PIDR--ESLYRLSFREIPPSEA--E--NE--SKNGVQIALRYSIPVFYRPAG 120 (122)
T ss_dssp -SSS---EEEEEEEEEEESCCT--T--SS--SSSEEEEEEEEEEEEEEEETT
T ss_pred CCCc--eEEEEEEEEEEecccc--c--cc--ccceEEEEEEEEEEEEECchh
Confidence 4432 3444454444544221 0 01 111123457778888887753
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.93 E-value=0.021 Score=48.31 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCchH-HHHHHHHHHHHHHHHHhc
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSR-AGGFST-VFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~~~-~~gf~~-~~~i~v~ll~~~iG~~~~ 222 (224)
+.+.+..|++|.++|.+|+..+++|.+.++....... ..-+.. +.=-.|+++|+|+|.++.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp 192 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLP 192 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3344455555555555555555555555544332111 112222 333788888999998864
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.95 E-value=1.4 Score=37.70 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=74.3
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCC-----CcEEEeCCceeeCCCCeEEEEEEecCCccCCCC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP-----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~ 80 (224)
-|.+.|..+.|+. +.....++|+|.++.++......... .-|.|.|+.-.|+||++..|.|.... ..|.|
T Consensus 25 ~v~l~~tRvi~~~---~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEE---SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEEC---CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 3667777888875 34578999999998877666655322 35999999999999999999999875 25554
Q ss_pred CCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCCC
Q 027355 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (224)
Q Consensus 81 ~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~~ 131 (224)
. ..-|.+....+|+... + +..=......++++-|.|..-+
T Consensus 100 r--Es~f~l~v~~IP~~~~--~-------~~~l~ia~r~~iklfyRP~~l~ 139 (230)
T PRK09918 100 T--EHLLRVSFEGVPPKPG--G-------KNKVVMPIRQDLPVLIQPAALP 139 (230)
T ss_pred e--eEEEEEEEEEcCCCCC--C-------CCEEEEEEEeEEEEEEeCCCCC
Confidence 2 2346666666665211 0 1111334566788888877643
No 8
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=94.64 E-value=1.6 Score=37.71 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=73.9
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeec------------CCCcEEEeCCceeeCCCCeEEEEEEecC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT------------NPKKYCVRPNTGIILPRTSCAVTVTMQA 73 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------------~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~ 73 (224)
-|.+++..+.|+. ......++|.|.++++..-..... ...-|.|.|+.--|+||+...+.|....
T Consensus 27 ~v~l~~TRvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 27 GVVVGGTRFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred eEEeCceEEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 3566777788875 345789999999988644443211 1124999999999999999999999875
Q ss_pred CccCCCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 74 QKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 74 ~~~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
...+|.|. ..-|-+....+|+... + +..-......++++-|.|..-
T Consensus 104 ~~~LP~DR--ESlf~lnv~~IPp~~~--~-------~n~L~iair~riKLFyRP~~L 149 (236)
T PRK11385 104 SDILPVDR--ETLFELSIASVPSGKV--E-------NQSVKVAMRSVFKLFWRPEGL 149 (236)
T ss_pred CCCCCCCc--eEEEEEEEEecCCCcC--C-------CceEEEEEEeeEEEEEccccc
Confidence 32467663 3456666666665211 1 001134567788888887754
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=94.61 E-value=1.1 Score=39.01 Aligned_cols=115 Identities=20% Similarity=0.253 Sum_probs=73.6
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC------C-----CcEEEeCCceeeCCCCeEEEEEEecCC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------P-----KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p-----~~Y~VrP~~Gii~P~~s~~I~Vtlq~~ 74 (224)
-|.|.|..+.|+.. .....|+|.|.++.++.....+.. | .-|.|.|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 37788888998743 357899999999887666654322 1 139999999999999999999998752
Q ss_pred ccCCCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 75 KEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 75 ~~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
...|.|.. --|-+....+|+... +- .+ .+..=......++++-|.|..-
T Consensus 106 ~~lP~DRE--Slf~lnv~eIP~~~~--~~-~~--~~n~l~ialr~~IKLFyRP~~L 154 (253)
T PRK15249 106 KKLPQDRE--SVFWFNVLQVPPTNI--GS-DS--GQNKMLVMLRSRIKLFYRPDGL 154 (253)
T ss_pred CCCCCCce--EEEEEEeeecCCCCc--cc-cc--ccceEEEEeeeEEEEEEccccC
Confidence 23666532 335555555554211 10 00 0001123466778888877754
No 10
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=94.42 E-value=2.1 Score=36.97 Aligned_cols=116 Identities=14% Similarity=0.233 Sum_probs=75.9
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCC----------cEEEeCCceeeCCCCeEEEEEEecCCc
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPK----------KYCVRPNTGIILPRTSCAVTVTMQAQK 75 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~----------~Y~VrP~~Gii~P~~s~~I~Vtlq~~~ 75 (224)
-|.+.|..+.|+. +.....++|.|.++.++........-+ -|.|.|+.--|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKS---DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeC---CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 4778888889875 345789999999988877766554321 399999999999999999999987532
Q ss_pred cCCCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 76 EAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 76 ~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
.+|.|.. .-|-+....+|+.....+- .. +..-......++++-|.|..-
T Consensus 103 ~lP~DrE--Slf~lnv~eIP~~~~~~~~-~~---~n~l~iair~~IKLFyRP~~l 151 (246)
T PRK09926 103 ALPKDRE--SVFWFNVLEVPPKPDAEKV-AN---QSLLQLAFRTRIKLFYRPDGL 151 (246)
T ss_pred CCCCCce--EEEEEEeeecCCCCccccc-cc---cceEEEeeeeeEEEEEcCccC
Confidence 3666522 3355555565542110000 00 001123466788888887754
No 11
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.30 E-value=0.3 Score=45.52 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=57.3
Q ss_pred eeeecccCCCceeEEEE-EEcCCCCeEEEEEeecC------------CCcEEEeCCceeeCCCCeEEEEEEecCCccCCC
Q 027355 13 ELKFPFELKKQSSCSMQ-LTNKTDKFVAFKVKTTN------------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (224)
Q Consensus 13 eL~F~~~~~~~~~~~l~-L~N~s~~~vaFKVKTT~------------p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~ 79 (224)
.|.|.-..+......|. |.|.+...|-|.-+--. ...|....+.|+|.||++..|.|++++.. +.
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~--~G 315 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK--VG 315 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC--ce
Confidence 58887766666666666 99999999999855433 46899999999999999999999999864 11
Q ss_pred CCCCCCeEEEEE
Q 027355 80 DFQCKDKFLLLS 91 (224)
Q Consensus 80 ~~~~kdKFlVqs 91 (224)
..+..+.+.+
T Consensus 316 --if~E~W~L~t 325 (426)
T PF14646_consen 316 --IFKERWELRT 325 (426)
T ss_pred --EEEEEEEEEE
Confidence 2345555554
No 12
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=93.49 E-value=4 Score=35.00 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=72.1
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC------CCcEEEeCCceeeCCCCeEEEEEEecCCccCCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~ 80 (224)
|.+++..+.|+. +.....++|.|.++.+..-...... ..-|.|.|+.--|+||+...|.|..... .+|.|
T Consensus 24 v~l~~TRvIy~~---~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDE---GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 666777788875 3457899999999887554433321 1249999999999999999999998753 36666
Q ss_pred CCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 81 ~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
. ..-|-+....+|+.....+ . ..-......++++-|.|..
T Consensus 100 R--ESlf~lnv~~IP~~~~~~~--~-----n~l~iair~~iKLfyRP~~ 139 (229)
T PRK15211 100 R--ESLFWLNVQEIPPKPKASE--G-----NVLAVALNTQVKLIYRPKA 139 (229)
T ss_pred c--eEEEEEEEEEcCCCCCccc--c-----ceEEEEEEeeeeeEEcchh
Confidence 3 3455666666665211000 0 0112346678888888764
No 13
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=93.48 E-value=0.51 Score=29.89 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=35.6
Q ss_pred EEEEcCCCCeE-EEEEeecCCCcEEEeCCceeeCCCCeEEEEEEe
Q 027355 28 MQLTNKTDKFV-AFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (224)
Q Consensus 28 l~L~N~s~~~v-aFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtl 71 (224)
.+++|.++.++ ..+|+| +=+...+..+...|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 57899998776 566765 56888999999999999999999874
No 14
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=93.15 E-value=4.9 Score=34.28 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=73.4
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC--------CCcEEEeCCceeeCCCCeEEEEEEecCCccC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN--------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~ 77 (224)
-|.++|..+.|+.. .....|+|.|.++.++.-...+.. ..-|.|.|+.--|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 46788888888753 457899999998877665554322 1249999999999999999999997753 35
Q ss_pred CCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
|.|. ..-|-+....+|+... +- . +..-......++++.|.|+.=
T Consensus 99 P~Dr--Eslf~lnv~eIP~~~~--~~-~----~n~l~iavr~riKLfyRP~~l 142 (227)
T PRK15299 99 PEDR--ESLYWLDIKSIPSSNP--DN-K----HNTLMLAVKAEFKLIYRPKAL 142 (227)
T ss_pred CCcc--eEEEEEEeEecCCCCc--cc-c----cceEEEEEeeeeeEEEccccc
Confidence 6652 2446666666665211 10 0 000123456778888887643
No 15
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=93.01 E-value=4.7 Score=34.75 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=71.8
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeec----------C----CCcEEEeCCceeeCCCCeEEEEEEec
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT----------N----PKKYCVRPNTGIILPRTSCAVTVTMQ 72 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT----------~----p~~Y~VrP~~Gii~P~~s~~I~Vtlq 72 (224)
|.++...+.|+. ......++|.|.++.+ |=|++. . ..-|.|.|+.--|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~---~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHA---GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcC---CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 566666788875 3457899999999876 444441 1 11399999999999999999999987
Q ss_pred CCccCCCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 73 AQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 73 ~~~~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
.. .+|.|. .--|-+....+|+... . . ..-......++++-|.|..-
T Consensus 99 ~~-~LP~DR--ESlf~lnv~~IPp~~~--~--~-----n~l~iair~riKlFYRP~~L 144 (234)
T PRK15192 99 GA-PLPADR--ESLFTLSIAAIPSGKP--E--A-----NRVQMAFRSALKLLYRPEGL 144 (234)
T ss_pred CC-CCCCcc--eEEEEEEEEecCCCCC--C--C-----cEEEEEEEeeeeEEEccccc
Confidence 53 367663 3456666666665211 0 0 11133466788888887754
No 16
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=92.59 E-value=2.8 Score=36.03 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=74.6
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC------CC----cEEEeCCceeeCCCCeEEEEEEecCCc
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------PK----KYCVRPNTGIILPRTSCAVTVTMQAQK 75 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~----~Y~VrP~~Gii~P~~s~~I~Vtlq~~~ 75 (224)
-|.+.+..+.|+. ......++|.|.++.++.-...... |. -|.|.|+.--|+||+...|.|......
T Consensus 11 ~v~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFAS---DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 3677888889875 3457899999999887554443321 11 499999999999999999999987533
Q ss_pred cCCCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 76 EAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 76 ~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
.+|.|. .--|-+....+|+... +. .. .+..-......++++-|.|..-
T Consensus 88 ~LP~DR--ESlf~lnv~~IP~~~~--~~-~~--~~~~l~iair~rIKlFyRP~~L 135 (233)
T PRK15246 88 QLATDR--ESLFWLNIYQIPPVTQ--DI-KN--HPRKLVLPLRLRLKILIRPTGL 135 (233)
T ss_pred CCCCCc--eEEEEEEEEEcCCCCc--cc-cc--ccceEEEEeeeEEEEEECCccc
Confidence 466652 2346666666665211 10 00 0001123466788888887754
No 17
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=91.57 E-value=4.3 Score=34.71 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=71.3
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-------CCcEEEeCCceeeCCCCeEEEEEEecCCccCC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p 78 (224)
-|.+++..+.|+.. .....++|.|.++.++.-...... ..-|.|.|+.--|+||+...|.|..... .+|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 36677778888753 357899999999876543333321 1259999999999999999999998753 356
Q ss_pred CCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 79 ~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
.|. ..-|-+....+|+.... +- . ..-......++++-|.|..
T Consensus 96 ~Dr--Eslf~lnv~~IP~~~~~-~~-~-----n~l~iair~rIKLFyRP~~ 137 (226)
T PRK15295 96 ADR--ESMYWLNIKGIPSIDDN-AS-A-----NRVEISINTQIKLIYRPPA 137 (226)
T ss_pred CCc--eEEEEEEEEEcCCCCCc-Cc-c-----ceEEEEeeeeeeEEEchhh
Confidence 552 23456666666652110 00 0 0112345667888787764
No 18
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=91.34 E-value=9 Score=33.18 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=73.6
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCC-CeEEEEEeecCC-------CcEEEeCCceeeCCCCeEEEEEEecCCccCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNP-------KKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~p-------~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p 78 (224)
|.+++..+.|+. +.....++|.|.++ .+..-....... .-|.|.|+.--|+||+...|.|...+...+|
T Consensus 39 v~l~~TRvIy~~---~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLS---NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 667777788875 34578999999985 556655554411 1499999999999999999999987533367
Q ss_pred CCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 79 ~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
.|. ..-|-+....+|+... + .+ +..-......++++-|.|..
T Consensus 116 ~DR--ESlf~lnv~eIPp~~~--~--~~---~n~L~iair~rIKlFyRP~~ 157 (243)
T PRK15290 116 DDR--ESVFWLNIKNIPPSAS--N--KA---TNSLEIAVKTRIKLFWRPAS 157 (243)
T ss_pred CCe--eEEEEEEEEEcCCCCc--c--cc---cceEEEEEEEeeeEEEeccc
Confidence 663 3456666666665211 1 00 00113456778888888775
No 19
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=91.11 E-value=1.7 Score=31.70 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHhcC
Q 027355 202 FSTVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 202 f~~~~~i~v~ll~~~iG~~~~~ 223 (224)
-|+.-+.+.+.+|++||+++.+
T Consensus 72 ~P~~svgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLRR 93 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHhC
Confidence 3677788888999999999976
No 20
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.05 E-value=1.1 Score=33.84 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=35.2
Q ss_pred eEEEEEEcCCCCeEEEEEeecCCCcEEE-eCCce-eeCCCCeEEEEEEecC
Q 027355 25 SCSMQLTNKTDKFVAFKVKTTNPKKYCV-RPNTG-IILPRTSCAVTVTMQA 73 (224)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-rP~~G-ii~P~~s~~I~Vtlq~ 73 (224)
...++|.|.++++..|.|+...+..+.+ .|... -|.||++..+.|.+..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEE
Confidence 4689999999999999999998888888 77555 4899999998888764
No 21
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=90.16 E-value=11 Score=32.19 Aligned_cols=113 Identities=13% Similarity=0.214 Sum_probs=70.2
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCC-CeEEEEEeecCC-----CcEEEeCCceeeCCCCeEEEEEEecCCccCCC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNP-----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~p-----~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~ 79 (224)
-|.+.|..+.|+.. .....++|.|.++ .++......... .-|.|.|+.--|+||+...|.|..... .+|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888888753 4578999999985 333333222211 139999999999999999999987643 3566
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
|. .--|-+..-.+|+... .. . .+..=......++++-|.|..-
T Consensus 98 Dr--ESlf~lnv~eIP~~~~--~~-~---~~n~l~ia~r~~IKlFyRP~~l 140 (228)
T PRK15208 98 DR--ESVYWINVKAIPAKSE--DA-E---NKNVLQIAVRTRLKLFYRPAGL 140 (228)
T ss_pred Ce--eEEEEEEEEEcCCCCC--Cc-c---ccceEEEEeeeeeeEEEchhhc
Confidence 52 2345555555664211 00 0 0001123466778887777653
No 22
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=90.00 E-value=12 Score=32.21 Aligned_cols=113 Identities=13% Similarity=0.250 Sum_probs=71.9
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeec--C---CCcEEEeCCceeeCCCCeEEEEEEecCCccCCC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTT--N---PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~---p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~ 79 (224)
-|.+.+..+.|+. ......++|+|.+++ +..-...+. . ..-|.|.|+.--|+||+...+.|..... ..|.
T Consensus 28 gi~l~~TRvIy~~---~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~ 103 (228)
T PRK15188 28 GIALGATRVIYPQ---GSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPT 103 (228)
T ss_pred eEEECcEEEEEcC---CCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 3667777788875 345789999999854 333222221 1 1249999999999999999999998753 3666
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
|. ..-|-+....+|+.... +. .+..-......++++-|.|..-
T Consensus 104 DR--ESlf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyRP~~l 146 (228)
T PRK15188 104 DR--ESVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIRPKNL 146 (228)
T ss_pred Cc--eEEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEECCccC
Confidence 53 34566666666653110 10 0111123466788888888764
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.98 E-value=1.3 Score=28.30 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
++-+.+....|..+-++|.+||+.|+.|+..|+...
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667778888888888889998888888877654
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=89.91 E-value=1.9 Score=29.95 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=15.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 027355 201 GFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
.-.++-.++=|+++.++|++++
T Consensus 50 ~kW~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 50 TKWIWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3356666777888888888764
No 25
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.88 E-value=12 Score=32.16 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=78.7
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-------CCcEEEeCCceeeCCCCeEEEEEEecCCccCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~ 79 (224)
+.+.+..+.|+.. .....++|.|.++.++.-.+..-. ..-|.|.|+.-.|+||+...|.|...+. ..|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 5566667888753 457899999988999988866552 4579999999999999999999999986 4677
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~~ 131 (224)
| ...-|-+.--.+|+... +.... . .-.....+++++-|.|+.-+
T Consensus 105 d--rEslf~lnv~eIPp~~~--~~~~~--n--~lq~a~r~riKlf~RP~~l~ 148 (235)
T COG3121 105 D--RESLFRLNVDEIPPKSK--DDKGP--N--VLQLALRSRIKLFYRPAGLA 148 (235)
T ss_pred C--ceeEEEEEeeecCCCCc--ccCCc--c--eEEEEeeeeeeEEECcccCC
Confidence 6 34566666666765321 11000 0 01235667888877776543
No 26
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=89.65 E-value=12 Score=31.98 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=70.0
Q ss_pred EEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCC----------CcEEEeCCceeeCCCCeEEEEEEecCCccC
Q 027355 8 NIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (224)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~ 77 (224)
.+.-..+.|+. ......++|.|.++.+..-....... .-|.|.|+.--|+||+...+.|..... .+
T Consensus 21 ~l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~L 96 (226)
T PRK15218 21 YIYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-NL 96 (226)
T ss_pred EeCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CC
Confidence 34444577764 34568899999998764433322221 149999999999999999999998653 46
Q ss_pred CCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
|.|. .--|-+....+|+... . .+ .+..-......++++-|.|..
T Consensus 97 P~DR--ESlfwlnv~~IPp~~~--~--~~--~~n~L~iairtrIKLfYRP~~ 140 (226)
T PRK15218 97 PGDR--ESLFYLNVLDIPPNSD--E--NK--DKNIIKFALQNRIKLIYRPPG 140 (226)
T ss_pred Ccce--eEEEEEEEEEcCCCCC--C--cC--cCcEEEEEeeeEEEEEEcccc
Confidence 7662 3456666667776311 0 00 000112456778888888775
No 27
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=89.63 E-value=12 Score=31.98 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=69.4
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecC-----CCcEEEeCCceeeCCCCeEEEEEEecCCccCCC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-----p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~ 79 (224)
-|.+++..+.|+.. ...+.++|.|.++. +..-...+.. ..-|.|.|+.--|+||+...|.|..... .+|.
T Consensus 26 gi~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~ 101 (229)
T PRK15195 26 GIALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAA 101 (229)
T ss_pred eEEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 36777878888753 33589999999854 3332211111 1259999999999999999999998743 3565
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
|.. .-|-+....+|+.... .. . .+..-......++++-|.|..-
T Consensus 102 DrE--Slf~Lnv~eIP~~~~~-~~-~---~~n~l~iair~~iKlFyRP~~l 145 (229)
T PRK15195 102 DRE--SLFWMNVKAIPSVDKN-AL-E---GRNVLQLAILSRIKLFVRPINL 145 (229)
T ss_pred Cee--EEEEEEeeecCCCCcc-cc-c---ccceEEEEEEeEEEEEEccccc
Confidence 522 3355555555542110 10 0 0011134567788888887754
No 28
>PRK10132 hypothetical protein; Provisional
Probab=89.19 E-value=3.4 Score=31.40 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHhcC
Q 027355 202 FSTVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 202 f~~~~~i~v~ll~~~iG~~~~~ 223 (224)
-|+.-+-+.+.+|+++|+++++
T Consensus 85 ~Pw~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 85 RPWCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhc
Confidence 3666777888899999999875
No 29
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=88.66 E-value=15 Score=31.72 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=70.7
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCC-CeEEEEEeecC----C-CcEEEeCCceeeCCCCeEEEEEEecC--CccC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTN----P-KKYCVRPNTGIILPRTSCAVTVTMQA--QKEA 77 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~----p-~~Y~VrP~~Gii~P~~s~~I~Vtlq~--~~~~ 77 (224)
-+.+++..+.|+. +.....++|.|.++ .++.-...... + .-|.|.|+.--|+||+...|.|.... ...+
T Consensus 17 ~v~l~~TRvIy~~---~~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDA---PQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 3567777788875 34578999999985 45544333311 1 24999999999999999999999763 2346
Q ss_pred CCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
|.|. ..-|-+....+|+... + .. .-......++++-|.|..
T Consensus 94 P~DR--ESlf~lnv~~IP~~~~--~--~n-----~L~iair~~iKLFyRP~~ 134 (239)
T PRK15254 94 PQDR--ETLFWFNVRGVPPKPE--D--DN-----VLQLAMQSQLKLFYRPKA 134 (239)
T ss_pred CCCc--eEEEEEEEEEcCCCCC--C--Cc-----eEEEEEEeEEeEEEcccc
Confidence 6663 3456666666665211 1 00 112346677888887765
No 30
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=87.53 E-value=2.2 Score=25.10 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
-.+|-.|.+.|+...++|+..|+.||.
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468888999999999999999999885
No 31
>smart00340 HALZ homeobox associated leucin zipper.
Probab=87.40 E-value=1.8 Score=27.20 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+.-|..=..+|.+||++|++|+..||..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666778889999999999999965
No 32
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=86.03 E-value=15 Score=31.74 Aligned_cols=112 Identities=11% Similarity=0.160 Sum_probs=67.5
Q ss_pred EeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEee----cC---CCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCC
Q 027355 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT----TN---PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (224)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT----T~---p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~ 81 (224)
++-..+.|+. ......++|.|.++.+ |-|++ .. ..-|.|.|+.--|+|++...+.|..... .+|.|.
T Consensus 32 l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~DR 105 (237)
T PRK15224 32 LGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 105 (237)
T ss_pred eCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCCce
Confidence 3333577764 3457899999998876 54544 11 1239999999999999999999998743 477763
Q ss_pred CCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 82 QCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 82 ~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
.--|-+....+|+.....+-..+--. ..-......++++-|.|..
T Consensus 106 --ESlFwlnv~~IPp~~~~~~~~~~~~~-~~LqiairtrIKLFYRP~~ 150 (237)
T PRK15224 106 --ETLQWVCIKAVPPENEPSDTQAKGAT-LDLNLSINVCDKLIFRPDA 150 (237)
T ss_pred --eEEEEEEEEEcCCCCccccccccccc-ceEEEEeheeeeEEEchhh
Confidence 34566666666652111000000000 0012345567777787764
No 33
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=85.17 E-value=3.1 Score=30.24 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
..|.+|...+........+||..||+...
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 36678888888888999999999998643
No 34
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=4.6 Score=30.41 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcC
Q 027355 203 STVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 203 ~~~~~i~v~ll~~~iG~~~~~ 223 (224)
|+--|-+-+-+||+||.+|.+
T Consensus 83 PWq~VGvaAaVGlllGlLlsR 103 (104)
T COG4575 83 PWQGVGVAAAVGLLLGLLLSR 103 (104)
T ss_pred CchHHHHHHHHHHHHHHHHhc
Confidence 444556778899999999976
No 35
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.82 E-value=2.3 Score=32.04 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.+..+++..+++|...++++|+.|+.|++.|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356677778888888888888888888887764
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.59 E-value=2.5 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
...+++..|+.+...++++|+.|+++++.|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888888888888888888888888874
No 37
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=84.55 E-value=3.2 Score=31.09 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=33.3
Q ss_pred CceeEEEEEEcCCCCeEEEEEeec-----C---CCcEE--Ee-----------CCceeeCCCCeEEEEEEecCC
Q 027355 22 KQSSCSMQLTNKTDKFVAFKVKTT-----N---PKKYC--VR-----------PNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 22 ~~~~~~l~L~N~s~~~vaFKVKTT-----~---p~~Y~--Vr-----------P~~Gii~P~~s~~I~Vtlq~~ 74 (224)
+..+..|+|+|.+++.+.|++.-. . .+.|. +. |..=.|.||++.+|.|++.+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 446789999999999999997665 1 12222 11 223358899999999999863
No 38
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=83.99 E-value=1.5 Score=35.56 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhccC
Q 027355 161 DAWSMISKLTEEKT------------SAMQQNQKLRQELEFVRKEISKS 197 (224)
Q Consensus 161 ~~~~~i~~L~eE~~------------~~~~en~~L~~el~~lr~~~~~~ 197 (224)
+++.++.+|++|.+ +++++.++|.+|++.+++.....
T Consensus 44 ~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 44 QLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655 35566666677777666655443
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.61 E-value=4.3 Score=28.54 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
.|...|..|+.|...|+++|..|+++...|+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555566666666666665444444444333
No 40
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.36 E-value=4.9 Score=26.83 Aligned_cols=35 Identities=9% Similarity=0.322 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
++..+++.++.-..+.++.||+.|+++++.+.+..
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888899999988888877654
No 41
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=83.28 E-value=28 Score=30.09 Aligned_cols=109 Identities=13% Similarity=0.265 Sum_probs=68.7
Q ss_pred EeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC------C----CcEEEeCCceeeCCCCeEEEEEEecCCccCC
Q 027355 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------P----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (224)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p----~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p 78 (224)
++-..+.|+. ......++|.|.++.+..-...... | .-|.|.|+.--|+|++...|.|...+. .+|
T Consensus 37 l~~TRvIy~~---~~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~LP 112 (242)
T PRK15253 37 IYGTRVIYPA---EKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-SLP 112 (242)
T ss_pred eCceEEEEeC---CCceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CCC
Confidence 3334577764 3457889999999876443332222 1 149999999999999999999987653 467
Q ss_pred CCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 79 ~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
.|. .--|-+....+|+... .. . .+..-......++++-|.|..
T Consensus 113 ~DR--ESlfwlnv~~IPp~~~--~~-~---~~n~l~iairtriKLFYRP~~ 155 (242)
T PRK15253 113 DNK--ESLFYLNVLDIPPNSQ--EN-A---GKNVLKFAMQNRIKLIWRPSR 155 (242)
T ss_pred cce--eEEEEEEEEEcCCCCC--Cc-C---cCcEEEEEeeeEEEEEEcchh
Confidence 662 3456666666766211 10 0 000112356678888888775
No 42
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=82.30 E-value=30 Score=30.27 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=55.6
Q ss_pred EeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecCC------CcEEEeCCceeeCCCCeEEEEEEecC-CccCCCC
Q 027355 9 IQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTNP------KKYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPD 80 (224)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~p------~~Y~VrP~~Gii~P~~s~~I~Vtlq~-~~~~p~~ 80 (224)
++-..+.|+. ......++|.|.++. +..-....... .-|.|.|+.--|+||+...|.|...+ ...+|.|
T Consensus 30 l~~TRvIy~e---~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D 106 (257)
T PRK15274 30 PDRTRVIFNG---NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD 106 (257)
T ss_pred eCceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc
Confidence 3333577764 345789999999865 44433322111 14999999999999999999999875 2346766
Q ss_pred CCCCCeEEEEEEecCC
Q 027355 81 FQCKDKFLLLSVVAPD 96 (224)
Q Consensus 81 ~~~kdKFlVqs~~~~~ 96 (224)
. .--|-+....+|+
T Consensus 107 R--ESlFwlNv~eIPp 120 (257)
T PRK15274 107 R--ESLFYFNVREIPP 120 (257)
T ss_pred e--eEEEEEEEEEcCC
Confidence 2 3456666666665
No 43
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=81.54 E-value=3.7 Score=37.61 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=39.9
Q ss_pred CCCceeEEEEEEcCCCCeEEEEEee------cCC-CcEEEeCCce--------------eeCCCCeEEEEEEecCC
Q 027355 20 LKKQSSCSMQLTNKTDKFVAFKVKT------TNP-KKYCVRPNTG--------------IILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKT------T~p-~~Y~VrP~~G--------------ii~P~~s~~I~Vtlq~~ 74 (224)
.++..+-+++++|.++.+|-.+==| .+| ..|...|+.. -|.||++.+|.|..|.-
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 3678888999999999999877333 344 4444444432 27899999999998853
No 44
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=80.68 E-value=37 Score=29.47 Aligned_cols=112 Identities=12% Similarity=0.134 Sum_probs=65.2
Q ss_pred CeeeecccCCCceeEEEEEEcCCCCeEEEEEeec--C---CCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCCe
Q 027355 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT--N---PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDK 86 (224)
Q Consensus 12 ~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT--~---p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdK 86 (224)
..+.|+. +.....++|.|.++.+..-..... . ..-|.|.|+.--|+|++...+.|..... .+|.|. .--
T Consensus 47 TRvIy~~---~~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DR--ESl 120 (246)
T PRK15233 47 TRVIYKE---DAPSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNE--ESL 120 (246)
T ss_pred eEEEEeC---CCcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCc--eEE
Confidence 3466653 235789999998877633332211 1 1249999999999999999999998753 466652 234
Q ss_pred EEEEEEecCCCCCcccCCCCccc-ccCCCeeeEEEeEEEEecCC
Q 027355 87 FLLLSVVAPDGATAKDIGPDMFT-KEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 87 FlVqs~~~~~~~~~~d~~~~~f~-~~~~~~i~~~kL~v~~~p~~ 129 (224)
|-+....+|+.....+-...--. ...-......++++-|.|..
T Consensus 121 fwlnv~~IPp~~~~~~~~~n~~~~~~~LqiairtrIKLFYRP~~ 164 (246)
T PRK15233 121 YWLCVKGVPPLNDNESNNKNNITTNLNVNVVTNSCIKLIYRPKT 164 (246)
T ss_pred EEEEEEEcCCCCcccccccccccccceEEEEeeeeeEEEEchhh
Confidence 66666666653210000000000 00012235677888888775
No 45
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.65 E-value=5 Score=27.05 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
+++.-|++.+..|..+|.+|+.|-..||....+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 344555666666667777777777777776554
No 46
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.47 E-value=4.5 Score=30.65 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+.+++..|+.....+.+||..|+-|-..||..
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555443
No 47
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.45 E-value=6.8 Score=27.53 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+..++.+|+++...+.++|..|++|...|+
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555666655555555555555555444
No 48
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=78.54 E-value=7.4 Score=25.39 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
...+..|..+...|..+|..|++++..|++
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567777888888888888888877764
No 49
>PRK14127 cell division protein GpsB; Provisional
Probab=78.26 E-value=7.2 Score=29.69 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+++...++..|.+|+..|+++|..|++++..++....
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466667788888999999999999998888887554
No 50
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=77.62 E-value=5.1 Score=28.51 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
|..|++|...|.+++++|+.||..+++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888888888888777765
No 51
>PRK01844 hypothetical protein; Provisional
Probab=77.52 E-value=1.8 Score=30.49 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027355 204 TVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 204 ~~~~i~v~ll~~~iG~~~~ 222 (224)
++.+++.+++|+++|||+.
T Consensus 7 I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666677777777764
No 52
>PRK10404 hypothetical protein; Provisional
Probab=77.03 E-value=25 Score=26.25 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcC
Q 027355 203 STVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 203 ~~~~~i~v~ll~~~iG~~~~~ 223 (224)
|+--+-+.+.+||++|+++.+
T Consensus 80 Pw~avGiaagvGlllG~Ll~R 100 (101)
T PRK10404 80 PWQGIGVGAAVGLVLGLLLAR 100 (101)
T ss_pred cHHHHHHHHHHHHHHHHHHhc
Confidence 555666788899999999875
No 53
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.59 E-value=11 Score=25.32 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.+..|+++...|..+|..|+.++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455444444444443
No 54
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=76.59 E-value=50 Score=28.68 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=65.5
Q ss_pred eCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEee--cCCC----cEEEeCCceeeCCCCeEEEEEEecC-CccCCCCC
Q 027355 10 QPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKT--TNPK----KYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPDF 81 (224)
Q Consensus 10 ~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKT--T~p~----~Y~VrP~~Gii~P~~s~~I~Vtlq~-~~~~p~~~ 81 (224)
+-..+.|+. ......++|+|.++. ++.-.... ...+ -|.|.|+.--|+||+...+.|...+ ...+|.|.
T Consensus 30 ~~TRVIy~~---~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~DR 106 (250)
T PRK15285 30 DRTRLVFRG---EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQDR 106 (250)
T ss_pred CccEEEEcC---CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCCc
Confidence 333577764 345789999999864 44333222 1211 3999999999999999999999775 23467662
Q ss_pred CCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 82 QCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 82 ~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
.--|-+....+|+... . .. .-......++++-|.|..
T Consensus 107 --ESlfwlnv~~IPp~~~--~--~n-----~L~iairtrIKLfYRP~~ 143 (250)
T PRK15285 107 --ETLFYYNVREIPPQSD--K--PN-----TLQIALQTRIKVFYRPQA 143 (250)
T ss_pred --eEEEEEEEEEcCCCCC--C--Cc-----EEEEEeeeeeeEEECccc
Confidence 3456666666665211 0 00 112345667777777664
No 55
>PRK00523 hypothetical protein; Provisional
Probab=76.41 E-value=2.1 Score=30.14 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 027355 202 FSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 202 f~~~~~i~v~ll~~~iG~~~~ 222 (224)
..++.+++.+++|+++|||+.
T Consensus 6 l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777778888764
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.95 E-value=8.4 Score=32.56 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCchHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKS--RAGGFSTVFVLLIGLLGILVGYLV 221 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~~--~~~gf~~~~~i~v~ll~~~iG~~~ 221 (224)
++.++-.+|++|...++.+++.|+.+++.+++..... -.||.-+ ++=.|+|+|+-|+.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~---~~GlllGlilp~l~ 195 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVA---GIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH---HHHHHHHHHhcccc
Confidence 4555666677777777777777776666666544322 1123222 23334666666654
No 57
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=75.62 E-value=4.9 Score=27.98 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCceeEEEEEEcCCCCeE-EEEEeecCCCcEE--EeCCc-eeeCCCCeEEEEEEecCC
Q 027355 21 KKQSSCSMQLTNKTDKFV-AFKVKTTNPKKYC--VRPNT-GIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~--VrP~~-Gii~P~~s~~I~Vtlq~~ 74 (224)
+....-.++++|..+..+ ..++.-..|.-+. +.|.. +-|.||++..+.+.+.+.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence 445677899999986543 3555555688777 55554 479999999999998764
No 58
>smart00338 BRLZ basic region leucin zipper.
Probab=75.46 E-value=12 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.+..|+.+...|..+|..|+.++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444
No 59
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.02 E-value=9.3 Score=29.13 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
++.+.+..|.||...|+-||++|++.+..+
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555566666666666666555554
No 60
>smart00338 BRLZ basic region leucin zipper.
Probab=74.60 E-value=10 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+++...+..|+.+...|..++..|+.|+..|+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788899999999999999999999888764
No 61
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=73.71 E-value=12 Score=36.01 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.+.+.+|-.|.+.|+.||..|++.|+.+-..
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4456666677777777777777777766544
No 62
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=73.45 E-value=8.5 Score=29.15 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 158 SFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 158 ~~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.+.++.+.+..|.||...|+-||++|++.+..+..
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35578889999999999999999999999888765
No 63
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=73.22 E-value=7.8 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=27.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 156 NSSFDDAWSMISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 156 ~~~~~~~~~~i~~L~eE~~~~~~en~~L~~e 186 (224)
..+++-+++.|..|.+..+.|..||.-|++-
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457789999999999999999999999874
No 64
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=73.16 E-value=15 Score=26.33 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=31.8
Q ss_pred eeEEEEEEcCCCCeEEEEEee-----cCCCcEEEeCCceeeCCCCeEEEEEEe
Q 027355 24 SSCSMQLTNKTDKFVAFKVKT-----TNPKKYCVRPNTGIILPRTSCAVTVTM 71 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKT-----T~p~~Y~VrP~~Gii~P~~s~~I~Vtl 71 (224)
..-.|+|.|.+...+.|.|.. ..|..|. |.||++..+.+-+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~-------v~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYT-------VAAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEE-------ECCCCEEEEEEee
Confidence 467899999999999999997 3344554 5568888877766
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=72.93 E-value=9.2 Score=36.26 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+..+...++.++.+.+.+..||++|++|-++||++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446677778888888888888888888888888743
No 66
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.86 E-value=9.7 Score=26.85 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
....++.+++.+.+.++.+|.+|+.|...|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455667777777777777777777766543
No 67
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=72.14 E-value=13 Score=24.91 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.++...+..|..+...|..++..|++++..|+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677788899999999999999999998888764
No 68
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=71.86 E-value=19 Score=33.09 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=40.7
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcE----------------------EEeCCceeeCCCCe
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKY----------------------CVRPNTGIILPRTS 64 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y----------------------~VrP~~Gii~P~~s 64 (224)
+.++-.+-.|.- .++...-+++++|.++.+|-..==+|+.-+| .|.|+. =|.||++
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~-pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNS-PIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCC-CcCCCce
Confidence 444444556653 4788999999999999999877433433332 344443 4899999
Q ss_pred EEEEEEecC
Q 027355 65 CAVTVTMQA 73 (224)
Q Consensus 65 ~~I~Vtlq~ 73 (224)
.++.|+.|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999975
No 69
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.84 E-value=9.6 Score=29.05 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
...+++..|+.....+.+||..|+-|-+.||+...
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999998765
No 70
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=71.70 E-value=18 Score=26.23 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=39.7
Q ss_pred CCceeEEEEEEcCCCCeEE-EEEeecCCCcEEEe--CCce-eeCCCCeEEEEEEecC
Q 027355 21 KKQSSCSMQLTNKTDKFVA-FKVKTTNPKKYCVR--PNTG-IILPRTSCAVTVTMQA 73 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y~Vr--P~~G-ii~P~~s~~I~Vtlq~ 73 (224)
+....-.+...|.+..++. |.+.-..|+-+.++ |..| .|.||+.+.-.+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3467788899999987774 88888888877765 5544 7899988776666654
No 71
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=70.62 E-value=34 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+.-+|+.|.+..++-...|.+..+..+
T Consensus 5 ~~l~L~R~~~~~~~~Y~~Ll~r~~e~~ 31 (82)
T PF13807_consen 5 EYLRLQRDVEIKRELYETLLQRYEEAR 31 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444788888877777777754444433
No 72
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=70.49 E-value=4 Score=27.67 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=27.8
Q ss_pred EEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCeEEEEEEe
Q 027355 28 MQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (224)
Q Consensus 28 l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtl 71 (224)
|+++|+|..+|.|- ++....++=..-...+.|.|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 68999999999886 554434332333444499999999887643
No 73
>PRK00523 hypothetical protein; Provisional
Probab=69.69 E-value=5.3 Score=28.09 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 027355 203 STVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 203 ~~~~~i~v~ll~~~iG~~~~ 222 (224)
.++.+|+++++++++|.+.|
T Consensus 3 ~~~l~I~l~i~~li~G~~~G 22 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIG 22 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999876
No 74
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=68.39 E-value=12 Score=28.47 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.+++|+..|.+++.+|+.|.+.|++..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666543
No 75
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.66 E-value=22 Score=23.83 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 027355 178 QQNQKLRQE 186 (224)
Q Consensus 178 ~en~~L~~e 186 (224)
.+..+|.++
T Consensus 17 ~kvdqLs~d 25 (56)
T PF04728_consen 17 SKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 76
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=67.23 E-value=33 Score=29.53 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
++-+++.|+...+.|.++++.++..|....
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555556666665555555443
No 77
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.46 E-value=17 Score=25.27 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027355 178 QQNQKLRQELEFVRK 192 (224)
Q Consensus 178 ~en~~L~~el~~lr~ 192 (224)
.++.+|+.|++.|++
T Consensus 47 ~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 47 EENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 78
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.33 E-value=18 Score=26.44 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
...|.+|+.+...+.+||.+|+.+++..|..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888887777766643
No 79
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.99 E-value=20 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
.|...|.-|+=|+..|+++|+.|.+|..
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4555566666666666666666655544
No 80
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.89 E-value=17 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~e 186 (224)
++...+..|.++...|.+++..|++|
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566667777777777777777654
No 81
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.81 E-value=7.4 Score=27.24 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027355 204 TVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 204 ~~~~i~v~ll~~~iG~~~~ 222 (224)
++.+++..++|+++|||+.
T Consensus 7 il~ivl~ll~G~~~G~fia 25 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888764
No 82
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=65.76 E-value=22 Score=26.11 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCCceeEEEEEEcCCCCe--------EEEEEeecCCC--cEEEeCCceeeCCCCeEEEEEEecCC
Q 027355 20 LKKQSSCSMQLTNKTDKF--------VAFKVKTTNPK--KYCVRPNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~--------vaFKVKTT~p~--~Y~VrP~~Gii~P~~s~~I~Vtlq~~ 74 (224)
.++.....++++|+++.. .++-|-=|--. ....+-..+-|.||++..+.+.+.|.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 467889999999999776 44444433322 24677888999999999999998764
No 83
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.93 E-value=19 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+..+.+.|.++..|+..++.++.+|..+-+.++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666665555555544444333
No 84
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=64.00 E-value=11 Score=34.08 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
..|++|..+|++||+.|+.|+++|..
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777666643
No 85
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.62 E-value=21 Score=25.53 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
..|...|.-|+=|+..++++|..|.+|...
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777777777777766666554
No 86
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.50 E-value=20 Score=29.17 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+..+-.+|++|...|+++|+.|++|+..|.+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777777777777666654
No 87
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=63.15 E-value=19 Score=25.70 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 027355 177 MQQNQKLRQELEFV 190 (224)
Q Consensus 177 ~~en~~L~~el~~l 190 (224)
.+.-+.|+++-..+
T Consensus 37 ~~kt~~L~~~a~~F 50 (89)
T PF00957_consen 37 EDKTEELSDNAKQF 50 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 33333343333333
No 88
>PRK14143 heat shock protein GrpE; Provisional
Probab=62.73 E-value=37 Score=29.40 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
...+.+++..|+++...+..+..+++.|.+.+||+..+
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888877653
No 89
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=62.65 E-value=11 Score=28.82 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el 187 (224)
..+-|..|+.|.+.|.+||.+|++|+
T Consensus 94 sLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 94 SLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34568899999999999999999986
No 90
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.41 E-value=34 Score=21.70 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
..+...|...-++|..+++.|++|.+.|+...
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777778888877777777654
No 91
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=61.15 E-value=37 Score=25.03 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=33.5
Q ss_pred CCceeEEEEEEcCCCCeEE-----EEEeecCCCcEEEeC---------CceeeCCCCeEEEEEEec
Q 027355 21 KKQSSCSMQLTNKTDKFVA-----FKVKTTNPKKYCVRP---------NTGIILPRTSCAVTVTMQ 72 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-----FKVKTT~p~~Y~VrP---------~~Gii~P~~s~~I~Vtlq 72 (224)
++-+.-.++++|.++..+. |++.+..-+.|.... ..+-|.||++++-.+.+.
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~ 100 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFE 100 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEE
Confidence 4557779999999987775 788877777777554 347899999999988885
No 92
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=60.11 E-value=21 Score=31.38 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+....+..|..|.+.|+.++.+|++|+..+|+...
T Consensus 219 e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 219 EMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888999999999999988887644
No 93
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.29 E-value=11 Score=25.34 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
-+++.+..+++++++++++|++.+|
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666667777777777766554
No 94
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=59.16 E-value=26 Score=25.68 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=33.5
Q ss_pred eeEEEEEEcCCCCeE-EEEEeecC-----------------CCcEEEeCCc--eeeCCCCeEEEEEEecC
Q 027355 24 SSCSMQLTNKTDKFV-AFKVKTTN-----------------PKKYCVRPNT--GIILPRTSCAVTVTMQA 73 (224)
Q Consensus 24 ~~~~l~L~N~s~~~v-aFKVKTT~-----------------p~~Y~VrP~~--Gii~P~~s~~I~Vtlq~ 73 (224)
-...|+|+|.++..+ .++|.=+- -..|.|+|.. +.|.||+++.+-+....
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 456788888877664 24433222 2678888763 79999999887776543
No 95
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=59.08 E-value=20 Score=28.13 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.|+.++..|.+|.++|++|...+++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444
No 96
>PRK14163 heat shock protein GrpE; Provisional
Probab=58.71 E-value=67 Score=27.38 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
...+.+.+..|++++..+.....+++.|.+.+|++..+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788889999999999999999999999887654
No 97
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=58.42 E-value=68 Score=27.57 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=6.0
Q ss_pred CCchHHHHHHHHHH
Q 027355 200 GGFSTVFVLLIGLL 213 (224)
Q Consensus 200 ~gf~~~~~i~v~ll 213 (224)
.|+.+|.+++++++
T Consensus 226 ~~~~~~~~i~~v~~ 239 (251)
T PF09753_consen 226 WGCWTWLMIFVVII 239 (251)
T ss_pred ccHHHHHHHHHHHH
Confidence 34544444433333
No 98
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.39 E-value=20 Score=25.12 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~e 186 (224)
.+.++..+..|..+|++|++|
T Consensus 41 ~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 41 VQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554
No 99
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.23 E-value=22 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
....+.+|+...+.+..+|.+|.+++..+|+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556789999999999999999999988774
No 100
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=58.12 E-value=30 Score=26.29 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
..+++..|.....++.+||..|+=|.+.||+..
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 344556666666666677777766666666554
No 101
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=58.09 E-value=29 Score=26.41 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.++++.-|++.+..|.+.|.+|++|-.+||...+
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4667777888888888888888888888876543
No 102
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=58.05 E-value=38 Score=27.62 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.++++.++.++.+|+..|++-...-+.....||++.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346677777777777777666555554555555543
No 103
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.20 E-value=68 Score=26.09 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 027355 207 VLLIGLLGILVGYL 220 (224)
Q Consensus 207 ~i~v~ll~~~iG~~ 220 (224)
-++++++|+++||+
T Consensus 160 g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 160 GVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 35677788888876
No 104
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=57.13 E-value=13 Score=21.63 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=7.1
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 027355 197 SRAGGFSTVFVLLIGLLGI 215 (224)
Q Consensus 197 ~~~~gf~~~~~i~v~ll~~ 215 (224)
.++.||++.=++++..|..
T Consensus 11 ~~~~GFTLiEllVa~~I~~ 29 (31)
T PF13544_consen 11 RRQRGFTLIELLVAMAILA 29 (31)
T ss_dssp -------HHHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHH
Confidence 3567999887755544443
No 105
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=56.84 E-value=7.4 Score=31.86 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el 187 (224)
..|++|.++|++|.+-|++|+
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555556665
No 106
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=56.83 E-value=27 Score=30.35 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQ---KLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~---~L~~el~~lr~~~~ 195 (224)
++.++..+|++|...|+.++. .|++|.++||+...
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555666666666655555 44566666776543
No 107
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.82 E-value=27 Score=26.22 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~e 186 (224)
.+++.+++.+|+++...|..|.+.|+..
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3455566666666666666666666653
No 108
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.59 E-value=12 Score=26.45 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=15.5
Q ss_pred chHHHH-HHHHHHHHHHHHHhcC
Q 027355 202 FSTVFV-LLIGLLGILVGYLVKT 223 (224)
Q Consensus 202 f~~~~~-i~v~ll~~~iG~~~~~ 223 (224)
|-+.|. ++.+++++-|||++++
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheec
Confidence 344444 5666778999999986
No 109
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.42 E-value=30 Score=23.66 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L 183 (224)
++.+++.++++|...|.++.+.|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555
No 110
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=55.86 E-value=15 Score=29.89 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=26.7
Q ss_pred EEEeecCCCcEEEeCCcee--eCCCCeEEEEEEecC
Q 027355 40 FKVKTTNPKKYCVRPNTGI--ILPRTSCAVTVTMQA 73 (224)
Q Consensus 40 FKVKTT~p~~Y~VrP~~Gi--i~P~~s~~I~Vtlq~ 73 (224)
|+|.-=+-+.|++.|.-|+ |.||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7788888899999999997 899999999998654
No 111
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.74 E-value=54 Score=22.60 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.+...+.+|++|...|+++...++.|-..|..+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555544443
No 112
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=55.73 E-value=30 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
....++.+++.|.+++..||.+|+=|...+.
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677777788888888888877766544
No 113
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.68 E-value=28 Score=30.29 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
|-.++....|++|.....+++..|+.|++.||+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666665554
No 114
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=55.39 E-value=32 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~ 188 (224)
.+++++...|.+||++|+.|..
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544
No 115
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.07 E-value=32 Score=27.66 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++..+|..|++|...+..++..|+.|+..|+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566666666666666666655555543
No 116
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=54.90 E-value=27 Score=23.00 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 171 EEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr~ 192 (224)
.++..+..||..|+.+|..++.
T Consensus 29 ~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 29 KRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556778888888877664
No 117
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=54.84 E-value=1.4e+02 Score=25.73 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=59.8
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEee---cC---------------CCcEEEeCCceeeCCCCeEEE
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT---TN---------------PKKYCVRPNTGIILPRTSCAV 67 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT---T~---------------p~~Y~VrP~~Gii~P~~s~~I 67 (224)
-|.|.|-.+.+.. ..+..+.++|.|.++.+..++|.. ++ ...-.+.|..-+|.||++..|
T Consensus 17 ~l~V~Pi~~~i~a--~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~I 94 (234)
T PRK15308 17 NMLVYPMAAEIGA--GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTV 94 (234)
T ss_pred eEEEEEeEEEecC--CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEE
Confidence 4678887777643 235678999999999888776542 12 224778899999999999999
Q ss_pred EEEecCCccCCCCCCCCCeEEEEEEecCC
Q 027355 68 TVTMQAQKEAPPDFQCKDKFLLLSVVAPD 96 (224)
Q Consensus 68 ~Vtlq~~~~~p~~~~~kdKFlVqs~~~~~ 96 (224)
.+..... ++ ...-|.|...++++
T Consensus 95 Rli~lg~----~~--kE~~YRl~~~pvp~ 117 (234)
T PRK15308 95 RVISLQA----PE--REEAWRVYFEPVAE 117 (234)
T ss_pred EEEEcCC----CC--cEEEEEEEEEecCC
Confidence 9987652 22 24567777777765
No 118
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.83 E-value=54 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
++..+|+.|....+.|..+...|+.+..
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 119
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=54.82 E-value=13 Score=26.61 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=13.3
Q ss_pred CCchHHHHHHHHHHHHHH
Q 027355 200 GGFSTVFVLLIGLLGILV 217 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~i 217 (224)
+||+.+++++|+++++++
T Consensus 2 gg~g~~ellIIlvIvlll 19 (78)
T PRK00720 2 GSFSIWHWLIVLAVVLLL 19 (78)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 478888887777777664
No 120
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=54.42 E-value=34 Score=26.03 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+..+|+.....|.+||+-|+-+++.|..+.
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777888888888887777776553
No 121
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=54.27 E-value=40 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++..+=..|..|+..|.+||..++.|++.++.+
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777777777777776643
No 122
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=53.83 E-value=88 Score=29.50 Aligned_cols=51 Identities=10% Similarity=0.181 Sum_probs=37.5
Q ss_pred ceeEEEEEEcCCCCeEEEEEeecCCCcEEEe-C-CceeeCCCCeEEEEEEecC
Q 027355 23 QSSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-P-NTGIILPRTSCAVTVTMQA 73 (224)
Q Consensus 23 ~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P-~~Gii~P~~s~~I~Vtlq~ 73 (224)
.-...++|.|.+.++..|.++........+. + +.=.|+||+..++.|++..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEe
Confidence 3467999999999888888887764443333 2 3448999999988888764
No 123
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.70 E-value=59 Score=22.38 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+.+.|..|-.-...++.||..|+++...++.
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555443
No 124
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=53.68 E-value=42 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.+.+.+..+.++...+.+.+.++++++..+|+.
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555556666555543
No 125
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=53.32 E-value=11 Score=24.33 Aligned_cols=15 Identities=67% Similarity=0.968 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
+++.++|+.+||+..
T Consensus 30 ll~vllsIalGylvs 44 (48)
T PF06612_consen 30 LLIVLLSIALGYLVS 44 (48)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888999999864
No 126
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=53.22 E-value=8.4 Score=28.88 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHhcC
Q 027355 202 FSTVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 202 f~~~~~i~v~ll~~~iG~~~~~ 223 (224)
=|++|.+=.||=|.+|||++|.
T Consensus 67 ESLLFaLQAAiGAgiIgY~lG~ 88 (100)
T PRK02898 67 ESLLFALQAALGAGIIGYILGY 88 (100)
T ss_pred HHHHHHHHHHHhhhhhheeeee
Confidence 4688888899999999999874
No 127
>PRK14139 heat shock protein GrpE; Provisional
Probab=53.10 E-value=75 Score=26.41 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
...+.+++..|+++...+.+...+++.|.+.+|+...+
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQE 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888888888888888898888876653
No 128
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=52.82 E-value=15 Score=26.08 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=13.2
Q ss_pred CCchHHHHHHHHHHHHHH
Q 027355 200 GGFSTVFVLLIGLLGILV 217 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~i 217 (224)
+||+.+++++|++++++|
T Consensus 2 gg~s~~ellIIlvIvlLl 19 (75)
T PRK04561 2 GSFSIWHWLVVLVIVLLV 19 (75)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 578888887777776654
No 129
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=52.65 E-value=2.3e+02 Score=27.61 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=44.4
Q ss_pred cCCCceeEEEEEEc---C-CCCeE-EEEEeecCCCcEEEe----CCceeeCCCCeEEEEEEecCCccCCCCCCCCCeEEE
Q 027355 19 ELKKQSSCSMQLTN---K-TDKFV-AFKVKTTNPKKYCVR----PNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLL 89 (224)
Q Consensus 19 ~~~~~~~~~l~L~N---~-s~~~v-aFKVKTT~p~~Y~Vr----P~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdKFlV 89 (224)
.++..+.|+-+|+. + +...| .|||--.+.+.|.-. ++-| ..-|+.+.-.|.+++.. +|.+ ..+.|.+
T Consensus 17 ~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~rdY~Tf~Wa~~p~~-~~~~s~~~~~V~F~ayy-LPk~--~~e~Yqf 92 (546)
T PF07888_consen 17 IPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSSTRDYYTFVWAPVPEN-YVEGSAVNCQVQFQAYY-LPKD--DDEFYQF 92 (546)
T ss_pred CCCCCeEEEEecCCCCCCCCCCeeEEeecCCCchhheeeEEeeccCcc-ccCCCccceEEEECccc-CCCC--CCCeEEE
Confidence 34667889999865 2 24566 799998888888643 2222 34466666678888763 5543 2355655
Q ss_pred EEE
Q 027355 90 LSV 92 (224)
Q Consensus 90 qs~ 92 (224)
.++
T Consensus 93 cYv 95 (546)
T PF07888_consen 93 CYV 95 (546)
T ss_pred EEE
Confidence 444
No 130
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=52.56 E-value=40 Score=24.90 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=34.3
Q ss_pred CCceeEEEEEEcCCCCeEE-EEEeecCCCcE--EEeCC-ceeeCCCCeEEEEEEecC
Q 027355 21 KKQSSCSMQLTNKTDKFVA-FKVKTTNPKKY--CVRPN-TGIILPRTSCAVTVTMQA 73 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y--~VrP~-~Gii~P~~s~~I~Vtlq~ 73 (224)
.....-.+...|.+..++. |.+.-..|+.| .+.|. ...|.|+..++-.+.+..
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 5677788999999987775 77776666654 45566 459999887775555433
No 131
>smart00637 CBD_II CBD_II domain.
Probab=51.98 E-value=74 Score=22.62 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.6
Q ss_pred CcEEEeCC--ceeeCCCCeEEEEEEe
Q 027355 48 KKYCVRPN--TGIILPRTSCAVTVTM 71 (224)
Q Consensus 48 ~~Y~VrP~--~Gii~P~~s~~I~Vtl 71 (224)
..|.++|. .+.|.||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 36899875 3799999988876665
No 132
>COG5547 Small integral membrane protein [Function unknown]
Probab=51.82 E-value=15 Score=24.72 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 027355 204 TVFVLLIGLLGILVGYLVKTT 224 (224)
Q Consensus 204 ~~~~i~v~ll~~~iG~~~~~~ 224 (224)
..++++..++|+-+|++..++
T Consensus 32 tilviil~~lGv~iGl~~~r~ 52 (62)
T COG5547 32 TILVIILILLGVYIGLYKKRT 52 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 567788888999999998764
No 133
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=51.59 E-value=12 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhcC
Q 027355 207 VLLIGLLGILVGYLVKT 223 (224)
Q Consensus 207 ~i~v~ll~~~iG~~~~~ 223 (224)
+++.|++++.+||++.+
T Consensus 10 i~l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 10 IILCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 47889999999999763
No 134
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=51.06 E-value=60 Score=26.59 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
...|++..+.+++|.+.|+++...+.+.+
T Consensus 59 ~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 59 ERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665555444443
No 135
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=50.59 E-value=92 Score=22.40 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhcC
Q 027355 208 LLIGLLGILVGYLVKT 223 (224)
Q Consensus 208 i~v~ll~~~iG~~~~~ 223 (224)
+.++++...++|++.+
T Consensus 75 ~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 75 FAFLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444445566677654
No 136
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=50.32 E-value=80 Score=22.93 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=32.0
Q ss_pred EEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEe
Q 027355 8 NIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (224)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtl 71 (224)
.++|+++..+. + ....|.++|..+..-.|-+..- .+ ...|.||++..+.++.
T Consensus 31 ~f~P~~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~~-----~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKA--G--QPVTLTFTNNDSRPHEFVIPDL-----GI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEET--T--CEEEEEEEE-SSS-EEEEEGGG-----TE---EEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcC--C--CeEEEEEEECCCCcEEEEECCC-----ce---EEEECCCCEEEEEEcC
Confidence 56777776643 2 2356999999888777777661 11 1579999999999864
No 137
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=50.27 E-value=48 Score=23.74 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027355 170 TEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 170 ~eE~~~~~~en~~L~~el~ 188 (224)
...+..|.++|++|++|..
T Consensus 45 ~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 45 QHQREELERENNHLKEQQN 63 (79)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3335556667777766654
No 138
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=48.65 E-value=41 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+..+++.+|..+...+..|++-|++-....++.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 466788999999999999999999998887765
No 139
>PF14645 Chibby: Chibby family
Probab=48.43 E-value=36 Score=26.10 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+..+|+++...|.+||+-|+=+.+.|-.+
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDM 100 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDM 100 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777778888888777766665443
No 140
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=48.23 E-value=19 Score=25.42 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCchHHHHHHHHHHHHHH
Q 027355 200 GGFSTVFVLLIGLLGILV 217 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~i 217 (224)
+|++.+++++|+++++++
T Consensus 2 g~~g~~elliIl~Ivlll 19 (73)
T PRK02958 2 GSFSIWHWLIVLVIVVLV 19 (73)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 467888887777776664
No 141
>PF15058 Speriolin_N: Speriolin N terminus
Probab=47.97 E-value=25 Score=29.50 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
-.+..|.+|..|...|+++.+-|+++.++
T Consensus 9 GlrhqierLv~ENeeLKKlVrLirEN~eL 37 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRLIRENHEL 37 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44677778877777777777777665444
No 142
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=47.93 E-value=99 Score=21.96 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=10.8
Q ss_pred eEEEEEEcCCCCeEEEEEee
Q 027355 25 SCSMQLTNKTDKFVAFKVKT 44 (224)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKT 44 (224)
...|+|+|.+++.|-+..-|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCC
Confidence 44566777776666655443
No 143
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=47.14 E-value=27 Score=30.52 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L 183 (224)
+|.+.|..|++|+..|+.|+.++
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999888866
No 144
>PRK14162 heat shock protein GrpE; Provisional
Probab=46.97 E-value=1e+02 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
...+.+.+..|+++...+.+...+++.|.+.+|++..+
T Consensus 41 ~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 41 VEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677888888888888888888888888876553
No 145
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.64 E-value=9.3 Score=31.26 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 171 EEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+|+..|+.++++|++|+-.||...
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888877777654
No 146
>PRK14153 heat shock protein GrpE; Provisional
Probab=46.40 E-value=31 Score=28.92 Aligned_cols=35 Identities=31% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+.++|..|+++...+.+...+++.|.+.+|+...
T Consensus 37 ~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 37 TADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888887655
No 147
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=45.24 E-value=52 Score=28.62 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQN 180 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en 180 (224)
+|..|.||...|+.||
T Consensus 98 ~i~dL~een~~L~~en 113 (292)
T KOG4005|consen 98 EIKDLTEENEILQNEN 113 (292)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 148
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=45.03 E-value=78 Score=20.30 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
..|+.....|..|.+.||.-+...++.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777766664
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.89 E-value=48 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
++...|..|+.|+.+|+-+++.++.+++.++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555666666666666666666666555544
No 150
>PRK14127 cell division protein GpsB; Provisional
Probab=44.75 E-value=77 Score=24.09 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+.+..++.+|++|...+.+++..++.++..
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555555555555555555554443
No 151
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=44.55 E-value=1.5e+02 Score=23.84 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~e 186 (224)
..+.|.+.++|..+++.|.+.|+++
T Consensus 71 ~~~~i~~Y~~~~~~~~~e~~~l~~~ 95 (157)
T PF14235_consen 71 YQKKIARYKKEKARYKSEAEELEAK 95 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665555544
No 152
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=44.22 E-value=7.5 Score=34.01 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 027355 201 GFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
+..+..+.+.+|++++||+++|
T Consensus 212 slq~~~iAL~sl~SLVIGFvlG 233 (273)
T PF02404_consen 212 SLQWPAIALPSLFSLVIGFVLG 233 (273)
T ss_dssp ----------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHH
Confidence 4445556688888899999887
No 153
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=43.64 E-value=61 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+.+|++++..+.++...++.++..+++
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 154
>PRK14161 heat shock protein GrpE; Provisional
Probab=43.56 E-value=59 Score=26.82 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
-+.+++..|+++...+.....+++.|.+.+|++..+
T Consensus 23 ~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 23 TANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888888876653
No 155
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=43.45 E-value=1.2e+02 Score=22.89 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTS---AMQQNQKLRQELEF 189 (224)
Q Consensus 163 ~~~i~~L~eE~~~---~~~en~~L~~el~~ 189 (224)
++.+.+|++|..+ -.+|-+++++|+.+
T Consensus 42 r~qL~ELe~d~~~G~l~~~e~~~~~~El~r 71 (117)
T TIGR03142 42 RDRLAELERDLAEGLLDEAEAEAARAELQR 71 (117)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4455566555443 13455667777653
No 156
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.32 E-value=24 Score=24.94 Aligned_cols=18 Identities=17% Similarity=0.702 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027355 205 VFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 205 ~~~i~v~ll~~~iG~~~~ 222 (224)
..+++.+++|+++||+..
T Consensus 15 ~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445688899999999864
No 157
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=43.30 E-value=29 Score=22.61 Aligned_cols=19 Identities=32% Similarity=0.724 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027355 204 TVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 204 ~~~~i~v~ll~~~iG~~~~ 222 (224)
.+++++.+.+|..+|+++-
T Consensus 32 tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 32 TLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5566667777777776653
No 158
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.00 E-value=1.4e+02 Score=24.64 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=34.0
Q ss_pred CCCceeEEEEEEcCCCCeEEEEEeecCC----CcEEEeC-----CceeeCCCCeEEEEEEecC
Q 027355 20 LKKQSSCSMQLTNKTDKFVAFKVKTTNP----KKYCVRP-----NTGIILPRTSCAVTVTMQA 73 (224)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p----~~Y~VrP-----~~Gii~P~~s~~I~Vtlq~ 73 (224)
.++.....++|.|..+. -||.|+=+.. +.|-+-- +...|+||+++.-.+++.|
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRP 97 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEee
Confidence 36788999999999776 7999998882 3333211 1244555555555555544
No 159
>PRK14155 heat shock protein GrpE; Provisional
Probab=42.68 E-value=56 Score=27.66 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
++.+++.+|++|+..+.+...+++.|.+.+|++..+
T Consensus 17 ~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 17 DAAQEIEALKAEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888876653
No 160
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.54 E-value=45 Score=31.74 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~ 185 (224)
+.+.+.++.+|..+...+++||++|++
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777888888888888888866
No 161
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=42.34 E-value=48 Score=27.02 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=45.5
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEecCCC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (224)
..-..-|.|-|+.++.|-.-+...+.|.+| +.|.|+|+..+-|.-.-... + ..-.+..||.+.--.+
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e--L----N~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE--L----NDLERVAVQLIAYKKD 84 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG--G----GG-SSEEEEEEEE-SS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH--h----hccceeEEEEEEEcCC
Confidence 456778899999999999999989999998 78999999998876543321 1 1234566666655443
No 162
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=42.23 E-value=67 Score=21.78 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKEISKS 197 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~~~~~ 197 (224)
+..+=.||+.|+.+.--|++||.-+|......
T Consensus 5 Lr~VL~ERNeLK~~v~~leEEL~~yk~~~~~~ 36 (60)
T PF11461_consen 5 LREVLQERNELKARVFLLEEELAYYKSELLPD 36 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 34445689999999999999999999876543
No 163
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.17 E-value=67 Score=27.24 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
.+.+.+++..|+++...+.+...+++.|.+.+|+...+
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788889999999999999999999988877653
No 164
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=42.16 E-value=16 Score=23.53 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 027355 207 VLLIGLLGILVGYL 220 (224)
Q Consensus 207 ~i~v~ll~~~iG~~ 220 (224)
+++..++|+++||-
T Consensus 8 ~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 8 AILALAIGLMIGYG 21 (47)
T ss_pred HHHHHHHHHHeeee
Confidence 34444555555553
No 165
>PRK14158 heat shock protein GrpE; Provisional
Probab=42.14 E-value=99 Score=25.90 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
..+.+++..|+++...+.++..+++.|.+.+|+...+
T Consensus 43 ~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 43 KELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788888888888888888888888876553
No 166
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.97 E-value=28 Score=31.62 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
++++=.+|+.|.+.|+.+..+|+.|..
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667788888888888888866544
No 167
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=41.78 E-value=70 Score=27.28 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLT-EEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~-eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.++++..++ .|-..++.||++|+.|++.+|...
T Consensus 105 kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 105 KIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 555678899999999999887643
No 168
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=41.61 E-value=85 Score=21.96 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.++.|+.|=+++.-|+-.|++.+...|+..+
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs 39 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQELS 39 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888887654
No 169
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=41.30 E-value=91 Score=22.69 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
++++.+++.+..+++..+..+.++|++....|
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888889999999999998887776
No 170
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=41.06 E-value=51 Score=18.22 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=11.8
Q ss_pred CCchHHHH-HHHHHHHHHHHH
Q 027355 200 GGFSTVFV-LLIGLLGILVGY 219 (224)
Q Consensus 200 ~gf~~~~~-i~v~ll~~~iG~ 219 (224)
.||+++-+ +.++++++++..
T Consensus 2 ~GfTLiEllial~i~~i~~~~ 22 (26)
T TIGR02532 2 RGFTLIELLVVLAILGILAAI 22 (26)
T ss_pred CceeHHHHHHHHHHHHHHHHH
Confidence 58998766 444445555443
No 171
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.04 E-value=86 Score=22.48 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~ 185 (224)
..++|...|..||+-|++
T Consensus 41 ~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 41 EVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444443333
No 172
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.02 E-value=69 Score=26.75 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 158 SFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 158 ~~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
.++++.+.+..|++++..+.+...+++.|.+.+|++..+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888876553
No 173
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=40.87 E-value=73 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.+.++|..|.++++.+..+.+.|..||+.+|.
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777666666666666666654
No 174
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.64 E-value=66 Score=21.74 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 170 TEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 170 ~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
..|+.+|..+..+++.++..+.++.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666666677777776666544
No 175
>PRK14151 heat shock protein GrpE; Provisional
Probab=40.48 E-value=83 Score=25.86 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+.+++..|++|...+.+...+++.|.+.+|+...
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888887654
No 176
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=40.41 E-value=9.3 Score=31.62 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHhccC--CCCCchHHHHHHHHHHHHHHHHHhcCC
Q 027355 189 FVRKEISKS--RAGGFSTVFVLLIGLLGILVGYLVKTT 224 (224)
Q Consensus 189 ~lr~~~~~~--~~~gf~~~~~i~v~ll~~~iG~~~~~~ 224 (224)
.+|++.++. .++|.++++.|||+.-.+-.|||.+||
T Consensus 29 ~~R~msS~g~pG~sGsN~~Y~l~vG~t~~gag~YaYkT 66 (180)
T PF14962_consen 29 PLRQMSSSGVPGGSGSNMVYYLVVGVTVSGAGYYAYKT 66 (180)
T ss_dssp --------------------------------------
T ss_pred hhHHHhcCCCCCCCCceEEEEEEECeEEEeeEEEEEEe
Confidence 666665532 345788999999999999999999886
No 177
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=40.11 E-value=7.4 Score=30.68 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=1.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 027355 201 GFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
-|+++.++++++++++=-|+|+
T Consensus 158 ~~si~~~~vli~~~~~Qv~~lk 179 (183)
T PF01105_consen 158 WWSIIQIVVLILVSVWQVYYLK 179 (183)
T ss_dssp --------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776666555554
No 178
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=39.99 E-value=65 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=23.8
Q ss_pred cccCCCceeEEEEEEcCCCCeEEEEEeec
Q 027355 17 PFELKKQSSCSMQLTNKTDKFVAFKVKTT 45 (224)
Q Consensus 17 ~~~~~~~~~~~l~L~N~s~~~vaFKVKTT 45 (224)
...++....-.++|+|.|++.+-|+|.-.
T Consensus 22 ~~~P~q~~~l~v~i~N~s~~~~tv~v~~~ 50 (121)
T PF06030_consen 22 KVKPGQKQTLEVRITNNSDKEITVKVSAN 50 (121)
T ss_pred EeCCCCEEEEEEEEEeCCCCCEEEEEEEe
Confidence 34567788889999999999999998643
No 179
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=39.69 E-value=20 Score=24.89 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
+++.++|+.+||+..
T Consensus 37 ll~vllaIalGylvs 51 (68)
T TIGR02327 37 VLVVLIAIALGYTVS 51 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888899998764
No 180
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=39.37 E-value=31 Score=24.38 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=12.1
Q ss_pred CCchHHHHHHHHHHHHHH
Q 027355 200 GGFSTVFVLLIGLLGILV 217 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~i 217 (224)
+|+..++++++++++++|
T Consensus 2 ~g~g~~elliIl~i~lll 19 (74)
T PRK01833 2 GGISIWQLLIIVAIIVLL 19 (74)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 467777777776666654
No 181
>PRK04406 hypothetical protein; Provisional
Probab=39.20 E-value=1e+02 Score=21.66 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.|..|.+..-.-.+++..|+.++..|+.+.
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777776665544
No 182
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=39.09 E-value=80 Score=23.00 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
+.++.+.+..|++++..+..+.+-++.++..|
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55788899999999999999999999888765
No 183
>PRK14147 heat shock protein GrpE; Provisional
Probab=38.87 E-value=89 Score=25.58 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
++.+++..|++|...+.....+++.|.+.+|+...+
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888876553
No 184
>PHA03155 hypothetical protein; Provisional
Probab=38.83 E-value=47 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~ 188 (224)
..|.+|+.+|+-||..|++.+.
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777788888887643
No 185
>PRK14144 heat shock protein GrpE; Provisional
Probab=38.72 E-value=95 Score=26.14 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
..++.+.+..|++|...+.+...+++.|.+.+|+...+
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888888888888888888888876553
No 186
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.68 E-value=99 Score=21.41 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 171 EEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr 191 (224)
++...|+.|++.|++|++..|
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555444433
No 187
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=38.63 E-value=46 Score=29.70 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
....|++|++.+++|++.++.+++.
T Consensus 40 ~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 40 QFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444544455555444444443
No 188
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=38.47 E-value=73 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
...+..++.|...|.+++..|+.|...|+
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444445555555544444444
No 189
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.44 E-value=74 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
...++.+|...|++|+.+|+.++..+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665555543
No 190
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=38.03 E-value=1e+02 Score=21.48 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=35.2
Q ss_pred CCceeEEEEEEcCCCC-eEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCC
Q 027355 21 KKQSSCSMQLTNKTDK-FVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~ 74 (224)
++...-.++|+|.... .=.|+|+-...+...-.-..+-|.||++..+.++..+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 5678889999999754 34566665444443333334788999999999998763
No 191
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.93 E-value=99 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+..+..++..+.++++++++|-+.|+...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544443
No 192
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.88 E-value=82 Score=28.24 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+.+++.+|+.|+..+.+|...|+.|...
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 193
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=37.76 E-value=10 Score=27.93 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 027355 201 GFSTVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~~ 223 (224)
.=|++|.+=.+|=|.+|||++|.
T Consensus 66 iESlLFaLQAaiGagiIgY~~G~ 88 (91)
T TIGR01165 66 IESLLFALQAALGALVIGYVIGY 88 (91)
T ss_pred HHHHHHHHHHHhhheeeeEEEEE
Confidence 34689999999999999999874
No 194
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.74 E-value=1.1e+02 Score=26.98 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+....+..++++.+.+..+..+|+++++.++
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555444
No 195
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.59 E-value=41 Score=27.60 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.++.+|...+.+|.++.+.|++.|+++
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 196
>PRK14146 heat shock protein GrpE; Provisional
Probab=37.59 E-value=80 Score=26.87 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
.+.+++..|+++...+.+...+++.|.+.+|++..+
T Consensus 58 ~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 58 SLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888999999988887653
No 197
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.53 E-value=1.1e+02 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.|..|.+....-.+++..|+.++..|+.+..
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666654443
No 198
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=37.30 E-value=47 Score=17.47 Aligned_cols=16 Identities=25% Similarity=0.683 Sum_probs=9.9
Q ss_pred CchHHHH-HHHHHHHHH
Q 027355 201 GFSTVFV-LLIGLLGIL 216 (224)
Q Consensus 201 gf~~~~~-i~v~ll~~~ 216 (224)
||++.=+ +.++++|++
T Consensus 2 GFTLiE~~v~l~i~~i~ 18 (20)
T PF07963_consen 2 GFTLIELLVALAIIAIL 18 (20)
T ss_pred ceeHHHHHHHHHHHHHH
Confidence 7887755 445555554
No 199
>PHA02414 hypothetical protein
Probab=37.25 E-value=1.6e+02 Score=21.95 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 027355 175 SAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 175 ~~~~en~~L~~el~~lr~~~~~~~~~gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
.+--|..+|.+.++.|+...+....+.=-+.-=+++++||-++.|.+.
T Consensus 61 hi~yQi~~Lee~i~aL~~~n~ked~~KkD~vEkVfmivLGAvvtyVFs 108 (111)
T PHA02414 61 HIYYQIERLEEKISALAESNKKEDTEKKDTVEKVFMIVLGAVVTYVFS 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888886655433222233333455566666666653
No 200
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.62 E-value=85 Score=26.31 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
.+.+.+.+..|+++...+.....+++.|.+.+|+...+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888888888888876553
No 201
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=36.53 E-value=84 Score=27.23 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCeEEEEE
Q 027355 26 CSMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (224)
Q Consensus 26 ~~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~Gii~P~~s~~I~V 69 (224)
..|+++|+|..++.|- ++....+ -.+....|+|.|+++..+.+
T Consensus 176 ~~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 176 SGIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred CEEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 3599999999999776 4322222 12223458999999998875
No 202
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.46 E-value=74 Score=31.30 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++...+.+|++|.+.|..++..|+.+++.|+.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665555555555555443
No 203
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=36.42 E-value=1.2e+02 Score=22.08 Aligned_cols=33 Identities=30% Similarity=0.243 Sum_probs=21.8
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTE------EKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~e------E~~~~~~en~~L~~el~~lr~~ 193 (224)
.+.++|.-|++ +..++.-||.+|++|+.++|.-
T Consensus 28 ~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 28 ALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655554 3345667888888888888754
No 204
>PRK10722 hypothetical protein; Provisional
Probab=36.33 E-value=99 Score=26.91 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 163 WSMISKL----TEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 163 ~~~i~~L----~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+...++| .++++.+++|+..|+.+++...++.
T Consensus 164 r~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKL 199 (247)
T PRK10722 164 RQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKL 199 (247)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577 6777788888888888877665544
No 205
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.27 E-value=1.4e+02 Score=25.45 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCchHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSR--AGGFSTVFV 207 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~~~--~~gf~~~~~ 207 (224)
++-+..++.+|.+-.+++.++..-|++.-+.+|....+.+ -.-||++-+
T Consensus 136 lep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi~Sl 186 (210)
T KOG1691|consen 136 LEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSILSL 186 (210)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 4456678899999999999999999888888887644332 224554433
No 206
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.18 E-value=88 Score=27.58 Aligned_cols=13 Identities=31% Similarity=0.347 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhc
Q 027355 183 LRQELEFVRKEIS 195 (224)
Q Consensus 183 L~~el~~lr~~~~ 195 (224)
|++|.++||+...
T Consensus 96 l~~EN~rLr~LL~ 108 (283)
T TIGR00219 96 LKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHhc
Confidence 4555556665443
No 207
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=36.05 E-value=72 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+..|.+|+..|+-||..|++.+.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888887543
No 208
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=36.00 E-value=1.4e+02 Score=21.22 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+.+...+..|+.....+.+-|.+|+.+...++..
T Consensus 22 ~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 22 DRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666777777778888888888887777663
No 209
>PHA03162 hypothetical protein; Provisional
Probab=36.00 E-value=54 Score=25.80 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el 187 (224)
..|..|+..|+-||..|++.+
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888754
No 210
>PRK14141 heat shock protein GrpE; Provisional
Probab=35.99 E-value=82 Score=26.72 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+.++|..|++|...+.+...+++.|++.+|+...
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~ 69 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQ 69 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888888888888888888887654
No 211
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.98 E-value=56 Score=28.12 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.++|+.+++|...+..-++.|+.|++.++...+
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 445566666666666666666666665554443
No 212
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=35.88 E-value=39 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=12.3
Q ss_pred CCchHHHHHHHHHHHHHH
Q 027355 200 GGFSTVFVLLIGLLGILV 217 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~i 217 (224)
.++.++.+++|+++++++
T Consensus 2 ~~ig~~elliIlvI~lll 19 (67)
T PRK03625 2 GEISITKLLVVAALVVLL 19 (67)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 356777777777777654
No 213
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.79 E-value=98 Score=26.31 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+.+.+.+|.++...+.....+++.|.+.+|++..
T Consensus 65 ~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 65 KLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777777777776654
No 214
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.78 E-value=9.9 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 027355 202 FSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 202 f~~~~~i~v~ll~~~iG~~~~ 222 (224)
=|++|.+=.++=|.+|||++|
T Consensus 65 ESLLFslQaaiGa~IIgY~lG 85 (97)
T COG1930 65 ESLLFSLQAAIGAGIIGYFLG 85 (97)
T ss_pred HHHHHHHHHHhcceeeeeeee
Confidence 357888888888899999886
No 215
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.22 E-value=1e+02 Score=26.03 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQN 180 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en 180 (224)
+.++..+++++|..++++++
T Consensus 76 ~~qk~m~efq~e~~eA~~~~ 95 (201)
T COG1422 76 ELQKMMKEFQKEFREAQESG 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44555566666666666643
No 216
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.21 E-value=1.3e+02 Score=20.53 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.|..|.+..-.-.+++.+|+.++..|+.+..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666667777777766665544
No 217
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=35.03 E-value=41 Score=22.02 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=11.1
Q ss_pred CchHHHHHHHHHHHHHH
Q 027355 201 GFSTVFVLLIGLLGILV 217 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~i 217 (224)
|++++.+++++++++++
T Consensus 2 gig~~elliI~vi~llv 18 (51)
T PRK01470 2 GMSFSHLLIVLLIIFVL 18 (51)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 46667777777766653
No 218
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=34.84 E-value=1.8e+02 Score=21.08 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=28.4
Q ss_pred CCceeEEEEEEcCCCCe--EEEEEeecCCCcEEEeCC-----ceeeCCCCeEEEE
Q 027355 21 KKQSSCSMQLTNKTDKF--VAFKVKTTNPKKYCVRPN-----TGIILPRTSCAVT 68 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VrP~-----~Gii~P~~s~~I~ 68 (224)
+....+.+.|+|.++.+ +.||+-==...-+.|.|. .=.|.|+++..|.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~ 77 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLS 77 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEE
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEE
Confidence 67788999999999655 788887777777777766 2344555544443
No 219
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=34.44 E-value=93 Score=22.31 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 027355 201 GFSTVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~~ 223 (224)
-++.....+.+++|..+|+-+++
T Consensus 57 iiS~i~s~lalli~~~~G~g~y~ 79 (84)
T PF09716_consen 57 IISTIASGLALLIATALGYGYYK 79 (84)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666777777877654
No 220
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.20 E-value=1.6e+02 Score=20.49 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++++.+..+..++..+....+.+..++..|+..
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444555544443
No 221
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=34.16 E-value=36 Score=32.55 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027355 172 EKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 172 E~~~~~~en~~L~~el~~lr 191 (224)
++++|++|.++||+++..+.
T Consensus 32 kie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 45555555555555544433
No 222
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=33.96 E-value=46 Score=25.23 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~ 188 (224)
...|+++++.|.+|...|+.++.
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 85 MDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777788888877653
No 223
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.66 E-value=1.1e+02 Score=24.73 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027355 175 SAMQQNQKLRQELEFVR 191 (224)
Q Consensus 175 ~~~~en~~L~~el~~lr 191 (224)
.++.++++|+.|++.|+
T Consensus 77 ~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 77 ELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 224
>PRK02119 hypothetical protein; Provisional
Probab=33.52 E-value=1.4e+02 Score=20.77 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.|..|.+..-.-.+++..|+.++..|+.+.
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666554443
No 225
>PF14802 TMEM192: TMEM192 family
Probab=33.52 E-value=1.5e+02 Score=25.66 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
+.+=.|-+..|+++|.+|++++..+
T Consensus 211 lEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 211 LEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344466778889999999887653
No 226
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.35 E-value=1.1e+02 Score=26.40 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++.....+++|...|.+++..|+-|++.++
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~ 169 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQ 169 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666655555443
No 227
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.32 E-value=94 Score=25.42 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
..+++.+|++|......+.+.|+++.+.+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 228
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=33.26 E-value=73 Score=31.32 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.++..+++.+|.++++++.++.++|+++++.++.-
T Consensus 95 ~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34666777788888888888888888777777653
No 229
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.09 E-value=89 Score=26.75 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCeEEEE--EeecCCCcEEEeCCceeeCCCCeEEEEEE
Q 027355 26 CSMQLTNKTDKFVAFK--VKTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (224)
Q Consensus 26 ~~l~L~N~s~~~vaFK--VKTT~p~~Y~VrP~~Gii~P~~s~~I~Vt 70 (224)
..|+++|+|..++.|- .-+. .++-.. -+.+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999987 3333 333333 77899999999886553
No 230
>PRK11637 AmiB activator; Provisional
Probab=33.05 E-value=1.1e+02 Score=28.37 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+|..++.++..+.++...++++++
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 231
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=33.04 E-value=1.6e+02 Score=22.80 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=19.6
Q ss_pred CCCcEEEeC--CceeeCCCCeEEEEEEec
Q 027355 46 NPKKYCVRP--NTGIILPRTSCAVTVTMQ 72 (224)
Q Consensus 46 ~p~~Y~VrP--~~Gii~P~~s~~I~Vtlq 72 (224)
.|..|...+ +..-|.||+++.+.+.+.
T Consensus 107 ~P~~yl~~~~~~~~~l~pg~~~~~~~~~~ 135 (149)
T PF11906_consen 107 TPADYLPPGLAAQAGLPPGESVPFRLRLE 135 (149)
T ss_pred ChHHhcccccccccccCCCCeEEEEEEee
Confidence 466666544 344599999999999886
No 232
>PRK00736 hypothetical protein; Provisional
Probab=33.01 E-value=1.5e+02 Score=20.40 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.|..|.+..-.-.+++..|+.++..|..+.
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666666665443
No 233
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=32.97 E-value=1.4e+02 Score=23.80 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=34.5
Q ss_pred CceeEEEEEEcCCCCeE-EEEEeecC-C--CcEEEeCCceeeCCCCeEEEEEEe
Q 027355 22 KQSSCSMQLTNKTDKFV-AFKVKTTN-P--KKYCVRPNTGIILPRTSCAVTVTM 71 (224)
Q Consensus 22 ~~~~~~l~L~N~s~~~v-aFKVKTT~-p--~~Y~VrP~~Gii~P~~s~~I~Vtl 71 (224)
.-+.-.|+++|.++..+ --+|.... + -+-.--|..+.|.||+++++.+-.
T Consensus 85 ~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred CcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 44666899999998765 34444444 2 234445889999999998877654
No 234
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=32.92 E-value=1.2e+02 Score=18.53 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 027355 206 FVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 206 ~~i~v~ll~~~iG~~~~~ 223 (224)
-+..+++..++|||.+..
T Consensus 20 ~l~mi~vFi~li~ytl~t 37 (38)
T PF09125_consen 20 ALAMILVFIALIGYTLAT 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334455556788887754
No 235
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=32.89 E-value=28 Score=32.24 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=18.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCC
Q 027355 201 GFSTVFVLLIGLLGILVGYLVKTT 224 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~~~ 224 (224)
.+.++.++++.++|+++||++.-+
T Consensus 304 ~c~~~~i~~lL~ig~~~gFv~Att 327 (387)
T PF12751_consen 304 SCIYLSILLLLVIGFAIGFVFATT 327 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Confidence 445666677888999999998743
No 236
>PRK14157 heat shock protein GrpE; Provisional
Probab=32.86 E-value=1e+02 Score=26.54 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
....++..|++|+..+.++..+++-|.+.+|++..+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~r 116 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQK 116 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888899999988888999999988877653
No 237
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.77 E-value=1.2e+02 Score=24.71 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L 183 (224)
++.+|+.+...|..+++.|
T Consensus 112 e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333343444333
No 238
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.66 E-value=66 Score=21.70 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHH
Q 027355 203 STVFVLLIGLLGIL 216 (224)
Q Consensus 203 ~~~~~i~v~ll~~~ 216 (224)
.+++.+++++|+++
T Consensus 40 ~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 40 YIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 239
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.64 E-value=1.1e+02 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L 183 (224)
++.+|+.|...+.+|.+.|
T Consensus 51 el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 240
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=32.60 E-value=70 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 170 TEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 170 ~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++++..|++|.++||.|+..|++.
T Consensus 41 ~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 41 QQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555666666777776666655
No 241
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.44 E-value=1.1e+02 Score=26.19 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+...++..|.+|+.+..++.+++.+++..
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 242
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=32.42 E-value=1.3e+02 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++++.++.+++||+.-|++-...=+.....|+|+
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555444433334444443
No 243
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=32.38 E-value=54 Score=21.73 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 027355 203 STVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 203 ~~~~~i~v~ll~~~iG~~~~ 222 (224)
.++.+++.+++|++++|+.+
T Consensus 12 ~~~~~~~a~~lg~~l~~~~g 31 (54)
T PF09489_consen 12 RLVQAAAAALLGLLLLYFVG 31 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888765
No 244
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.38 E-value=76 Score=28.44 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+++|-+|+..|..|+++|+.+|+..+....
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5689999999999999999999988765543
No 245
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.25 E-value=1.6e+02 Score=19.91 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027355 176 AMQQNQKLRQELEFVRK 192 (224)
Q Consensus 176 ~~~en~~L~~el~~lr~ 192 (224)
....|..|.+++..|++
T Consensus 37 aE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 246
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=32.09 E-value=1.4e+02 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 027355 200 GGFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
..|.-+++.+.|-+|+++|..++
T Consensus 75 ~~f~r~~lAlAASVAFv~Gl~~~ 97 (232)
T PF11859_consen 75 PRFARWHLALAASVAFVVGLSFG 97 (232)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888887764
No 247
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.84 E-value=44 Score=25.24 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
..+..|.++...|..+|..|++++..|+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544433
No 248
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=31.83 E-value=55 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEe
Q 027355 36 KFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (224)
Q Consensus 36 ~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtl 71 (224)
++|+||+ |.+.-|.||+++++.+..
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Y 140 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVY 140 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEE
Confidence 6777776 888899999999999885
No 249
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.74 E-value=1.1e+02 Score=30.24 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+..+..+++.|+.++..++.++.+|+.+++.+++..
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777666543
No 250
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.73 E-value=94 Score=22.28 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.|.+..+..++|+++|++|-..|+.
T Consensus 34 ~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 34 ALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555544443
No 251
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=31.71 E-value=44 Score=22.19 Aligned_cols=16 Identities=19% Similarity=0.814 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 027355 206 FVLLIGLLGILVGYLV 221 (224)
Q Consensus 206 ~~i~v~ll~~~iG~~~ 221 (224)
.+|++..+|+++|=++
T Consensus 6 wlIIviVlgvIigNia 21 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIA 21 (55)
T ss_pred hHHHHHHHHHHHhHHH
Confidence 3567777888888654
No 252
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=31.67 E-value=79 Score=25.77 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 171 EEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+|+..|+.|..++.+|+..||+.
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqv 51 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQV 51 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554443
No 253
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.64 E-value=1.6e+02 Score=19.61 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
.....+..++.|.+.++++++.+++-...
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888888888888776543
No 254
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=31.59 E-value=1.1e+02 Score=24.56 Aligned_cols=43 Identities=23% Similarity=0.587 Sum_probs=29.4
Q ss_pred eeecccC-CCceeEEEEEEcCC---CCeEEEEEee------cCCCcEEEeCCc
Q 027355 14 LKFPFEL-KKQSSCSMQLTNKT---DKFVAFKVKT------TNPKKYCVRPNT 56 (224)
Q Consensus 14 L~F~~~~-~~~~~~~l~L~N~s---~~~vaFKVKT------T~p~~Y~VrP~~ 56 (224)
|.|.... .+-..|.++|.--. ...|+|++|- .-+.-+|++||.
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 5565433 35678999887632 4559999883 346788999984
No 255
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=31.26 E-value=55 Score=23.58 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.4
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 027355 200 GGFSTVFVLLIGLLGILVGY 219 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~iG~ 219 (224)
--|++..+++++++|++.|.
T Consensus 17 ~ry~L~~iL~i~~~a~l~G~ 36 (90)
T PF13808_consen 17 RRYPLADILLIALCAVLCGA 36 (90)
T ss_pred ceecHHHHHHHHHHHHHHcc
Confidence 35899999999999999885
No 256
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=31.15 E-value=1.8e+02 Score=20.11 Aligned_cols=58 Identities=5% Similarity=0.087 Sum_probs=37.0
Q ss_pred CeeeecccCCCceeEEEEEEcCCC--CeEEEEEeec---CCCcEEEeCCceeeCCCCeEEEEEE
Q 027355 12 SELKFPFELKKQSSCSMQLTNKTD--KFVAFKVKTT---NPKKYCVRPNTGIILPRTSCAVTVT 70 (224)
Q Consensus 12 ~eL~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKTT---~p~~Y~VrP~~Gii~P~~s~~I~Vt 70 (224)
-.+.+...........|.|.|-.+ -.....|.+. +.+.|.+.++.+ |.++....|.+.
T Consensus 15 ~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 15 ITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIV 77 (93)
T ss_pred EEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEE
Confidence 357776544456788999998765 2223344322 237888888776 566667777777
No 257
>PF15058 Speriolin_N: Speriolin N terminus
Probab=31.10 E-value=1.2e+02 Score=25.57 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
..-|++.++++..||+.||+.+.++|..
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN 34 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIREN 34 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3567888899999999999988888853
No 258
>COG4499 Predicted membrane protein [Function unknown]
Probab=30.98 E-value=69 Score=29.82 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 027355 209 LIGLLGILVGYLV 221 (224)
Q Consensus 209 ~v~ll~~~iG~~~ 221 (224)
+++++.++|+|++
T Consensus 227 liillvl~li~~~ 239 (434)
T COG4499 227 LIILLVLLLIYFT 239 (434)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555666554
No 259
>PF13205 Big_5: Bacterial Ig-like domain
Probab=30.88 E-value=2e+02 Score=20.40 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=35.9
Q ss_pred eeeecccCC-CceeEEEEEEc--CCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEe
Q 027355 13 ELKFPFELK-KQSSCSMQLTN--KTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (224)
Q Consensus 13 eL~F~~~~~-~~~~~~l~L~N--~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtl 71 (224)
.|.|..+.. ......+.+.+ .....|.+. ....+.+.++|. +-|.||.++.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 367765543 33444556643 444555555 444589999998 557889999998854
No 260
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=30.88 E-value=74 Score=26.82 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+.++-.+|-.++..+.+|+..|++|..
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~ 149 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENE 149 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 261
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=30.84 E-value=1.2e+02 Score=24.59 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 027355 181 QKLRQELEFVRKE 193 (224)
Q Consensus 181 ~~L~~el~~lr~~ 193 (224)
++..++|+.+++.
T Consensus 85 ~ea~~~L~~I~~~ 97 (193)
T PF06738_consen 85 EEAIERLDEIDRE 97 (193)
T ss_pred HHHHHHHHHHhhC
Confidence 4455555555544
No 262
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=30.76 E-value=81 Score=26.62 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~ 185 (224)
+-..|..+++|+..|++||..|++
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 263
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=30.74 E-value=67 Score=27.01 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 170 TEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 170 ~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+.....++++|++|++++..|-..+.
T Consensus 46 erQ~~~LR~~~~~L~~~l~~Li~~Ar 71 (225)
T PF04340_consen 46 ERQLERLRERNRQLEEQLEELIENAR 71 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788777777665544
No 264
>PRK14156 heat shock protein GrpE; Provisional
Probab=30.71 E-value=1.1e+02 Score=25.34 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
..+++..|++++..+++...+++.|.+.+|+...
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 65 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRAN 65 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888777654
No 265
>PRK00295 hypothetical protein; Provisional
Probab=30.63 E-value=1.6e+02 Score=20.22 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.|..|.+..-+-.+++..|+.++..|+.+
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666555555443
No 266
>PRK04325 hypothetical protein; Provisional
Probab=30.60 E-value=1.8e+02 Score=20.34 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.|..|.+.+-.-.+++..|+.++..|..+.
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777766665443
No 267
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.47 E-value=1.3e+02 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
.+++.+|+.++..+..+...++..|.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45778888888888888888776654
No 268
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.70 E-value=1.3e+02 Score=26.59 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
..|..++.+++.+..++.++++|+..+.+.+
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555554444
No 269
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.70 E-value=35 Score=24.81 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=15.0
Q ss_pred EEEEeecCCC--cEEEeCCceeeC
Q 027355 39 AFKVKTTNPK--KYCVRPNTGIIL 60 (224)
Q Consensus 39 aFKVKTT~p~--~Y~VrP~~Gii~ 60 (224)
+||+|+.+-+ ||++.|+.|+-.
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6899977655 566667776543
No 270
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=29.67 E-value=2.2e+02 Score=24.37 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHh
Q 027355 182 KLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLV 221 (224)
Q Consensus 182 ~L~~el~~lr~~~~~~~~~gf~~~~~i~v~ll~~~iG~~~ 221 (224)
++.+|+..||....+..-....+++-++++..|+++||+-
T Consensus 178 kId~Ev~~lk~qi~s~K~qt~qw~~g~v~~~~Al~La~~r 217 (220)
T KOG3156|consen 178 KIDQEVTNLKTQIESVKTQTIQWLIGVVTGTSALVLAYLR 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444332222334566688899999999874
No 271
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=29.63 E-value=77 Score=17.84 Aligned_cols=16 Identities=50% Similarity=0.791 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHHHH
Q 027355 202 FSTVFVLLIGLLGILV 217 (224)
Q Consensus 202 f~~~~~i~v~ll~~~i 217 (224)
|+...+.+++++|++.
T Consensus 4 F~~i~l~I~all~i~~ 19 (26)
T TIGR03024 4 FSTIALPIIALLAIIV 19 (26)
T ss_pred CcchHHHHHHHHHHHH
Confidence 6655556666776643
No 272
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=29.61 E-value=1.4e+02 Score=21.98 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
++.+.+-.|-+++..|++|++.|++.+.+
T Consensus 68 ~gialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 68 PGIAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777775443
No 273
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=29.59 E-value=63 Score=20.97 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhcC
Q 027355 208 LLIGLLGILVGYLVKT 223 (224)
Q Consensus 208 i~v~ll~~~iG~~~~~ 223 (224)
++-.+++++.|+++++
T Consensus 7 ~~~~~~~l~~~~il~~ 22 (54)
T PF07664_consen 7 LLGILVALLVGLILKK 22 (54)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556677777877764
No 274
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=29.58 E-value=1e+02 Score=23.51 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+..+.+.+..|.||...|+-||.+|++.|..
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3456778889999999999999999998876
No 275
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.47 E-value=1.3e+02 Score=25.85 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+.++.+|+..+.++.+.|+.|++
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444333333333333
No 276
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=29.28 E-value=1.4e+02 Score=27.17 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+-+...+.+|+++...|.++|++|+++...+++
T Consensus 133 d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~ 165 (342)
T PF06632_consen 133 DWCLDANSRLQAENEHLQKENERLESEANKLLK 165 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666555444
No 277
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=29.25 E-value=59 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=8.4
Q ss_pred chHHHHHHHHHHHHH
Q 027355 202 FSTVFVLLIGLLGIL 216 (224)
Q Consensus 202 f~~~~~i~v~ll~~~ 216 (224)
+.++.++++++++++
T Consensus 2 ig~~ElliI~vi~ll 16 (47)
T TIGR01411 2 LSPPEWLIILVVILL 16 (47)
T ss_pred CCHHHHHHHHHHHHH
Confidence 445556566665555
No 278
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=29.17 E-value=27 Score=26.46 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++.+...+..|..|+..|..++..|+.++..++.
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3467778888999999999999888887777654
No 279
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=1.4e+02 Score=23.89 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTV 205 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~~~~~gf~~~ 205 (224)
.+++..++++...+...+.++...|-.+...++........+|++.-
T Consensus 18 ~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~ 64 (148)
T COG2882 18 EEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAA 64 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 45778888999999999999999888877777766665566777753
No 280
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=28.89 E-value=99 Score=23.42 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
+.++++++..|.++.++|+..++...+....
T Consensus 47 ~~ege~~~qkL~eqteeLK~kvqe~sk~i~~ 77 (106)
T PF12443_consen 47 IREGEQMIQKLGEQTEELKDKVQEFSKRIEQ 77 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 3566677777777888888888877776554
No 281
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=28.89 E-value=1.1e+02 Score=28.49 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
...+..|.++..++++|.+++++|++.++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 35 DIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555555555666666666655553
No 282
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=28.87 E-value=1.6e+02 Score=24.70 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+.++...|+.|+..++.+.++|+..+..|.+...
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888889999999999999888888876643
No 283
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.81 E-value=1e+02 Score=29.94 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
-+...++.|.+|...|+.||.+|..++..+|+..
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4566778888999999999999999998888644
No 284
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=28.65 E-value=99 Score=28.20 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
....|.+|.++|++||.+|++++..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666554443
No 285
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=28.65 E-value=1.8e+02 Score=28.36 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+.+..|+.-++++.+||++|+.|-..||+...
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345567888888999999999999999998765
No 286
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=28.50 E-value=3.4e+02 Score=25.43 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=8.6
Q ss_pred eeeCCCCeEEEEEEecC
Q 027355 57 GIILPRTSCAVTVTMQA 73 (224)
Q Consensus 57 Gii~P~~s~~I~Vtlq~ 73 (224)
.+-..+.+-.|.|++..
T Consensus 114 ~v~~~~~s~vi~Is~~~ 130 (498)
T TIGR03007 114 SISLAGRDNLFTISYED 130 (498)
T ss_pred EEeecCCCCeEEEEeeC
Confidence 33344445556666554
No 287
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=28.42 E-value=1.5e+02 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
..-.|+..|++.|++||+|-..||.
T Consensus 52 ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 52 QHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566666666666666666553
No 288
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=28.33 E-value=2.6e+02 Score=22.65 Aligned_cols=16 Identities=44% Similarity=0.478 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027355 178 QQNQKLRQELEFVRKE 193 (224)
Q Consensus 178 ~en~~L~~el~~lr~~ 193 (224)
++.+++++|+..+.++
T Consensus 47 ~~~~~~~~e~~~l~k~ 62 (181)
T TIGR03592 47 DDPQKLQQEMMKLYKE 62 (181)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3445566666665554
No 289
>PRK13673 hypothetical protein; Provisional
Probab=28.28 E-value=1.1e+02 Score=23.64 Aligned_cols=34 Identities=29% Similarity=0.702 Sum_probs=19.0
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHh
Q 027355 186 ELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLV 221 (224)
Q Consensus 186 el~~lr~~~~~~~~~gf~~~~~i~v~ll~~~iG~~~ 221 (224)
|+...|++.++. .+++...++ ++.++-+++|+.+
T Consensus 78 Em~l~r~kk~k~-~~~~~~~~i-i~lvlti~lG~~L 111 (118)
T PRK13673 78 EMSLAKRKKGKP-TGGFWWIFI-IVLVLTILLGLIL 111 (118)
T ss_pred HHHHHHHHcCCC-cccHHHHHH-HHHHHHHHHHHHh
Confidence 566666654433 345544444 4456666788765
No 290
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=28.19 E-value=1.1e+02 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
..+||.+-|++++..|.+....|++.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666555555554
No 291
>PRK07857 hypothetical protein; Provisional
Probab=28.02 E-value=1.9e+02 Score=21.87 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 158 SFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 158 ~~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.+++.+++|.++.+|+-.|..+...+-.++..+|+..
T Consensus 29 ~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~ 65 (106)
T PRK07857 29 EIDELREEIDRLDAEILALVKRRTEVSQAIGKARMAS 65 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3557888899999888888888888888877777654
No 292
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=27.82 E-value=1.2e+02 Score=27.02 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+..|+++.+.+++||++|++|++.+++...
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888887654
No 293
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=27.78 E-value=1.8e+02 Score=20.61 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHHHHHHHh
Q 027355 182 KLRQELEFVRKEISKSRA-GGFSTVFVLLIGLLGILVGYLV 221 (224)
Q Consensus 182 ~L~~el~~lr~~~~~~~~-~gf~~~~~i~v~ll~~~iG~~~ 221 (224)
+=++|+..+|...-++++ ....+...++++++|+++|+++
T Consensus 25 ~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~ 65 (121)
T PF02687_consen 25 ERRREIAILRALGASKRQIRKMFLYEALLIALIGILIGILL 65 (121)
T ss_pred HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677765333221 1233555566777777777654
No 294
>PRK09039 hypothetical protein; Validated
Probab=27.77 E-value=1.2e+02 Score=27.43 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++...|..|+.|+..|+.|...|+.+++..+.
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777666665443
No 295
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=27.69 E-value=75 Score=17.50 Aligned_cols=11 Identities=45% Similarity=0.920 Sum_probs=5.9
Q ss_pred CCchHHHHHHH
Q 027355 200 GGFSTVFVLLI 210 (224)
Q Consensus 200 ~gf~~~~~i~v 210 (224)
+||.+..++++
T Consensus 4 ~~FalivVLFI 14 (24)
T PF09680_consen 4 SGFALIVVLFI 14 (24)
T ss_pred ccchhHHHHHH
Confidence 46666554433
No 296
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.63 E-value=1.4e+02 Score=21.19 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+..++-.+|.+|+..+..|.++++.+....+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4555667777777777777777777755544
No 297
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=27.51 E-value=2e+02 Score=20.71 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=33.6
Q ss_pred CceEEeCCeeeecccCCCceeEEEEEEcCC--CCeEEEEEeecCCCcEEEeC----CceeeCCCCeEEEEEEe
Q 027355 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKT--DKFVAFKVKTTNPKKYCVRP----NTGIILPRTSCAVTVTM 71 (224)
Q Consensus 5 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s--~~~vaFKVKTT~p~~Y~VrP----~~Gii~P~~s~~I~Vtl 71 (224)
.-+.++|++|.... ++ .++++|.. .+.+.|-=.......-...+ +.+.+.||++.++.++-
T Consensus 10 g~~~F~P~~i~v~~--G~----~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 10 GALVFEPAKISIAA--GD----TVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CceeEeCCEEEECC--CC----EEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 34678888888753 22 36777864 45555532211111101111 34578899998886653
No 298
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.26 E-value=1.2e+02 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
+.+++....+|.+|...|++....++-+...||.....
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 44677777888888888888888888888889887654
No 299
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.14 E-value=1.1e+02 Score=19.36 Aligned_cols=13 Identities=54% Similarity=0.989 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q 027355 207 VLLIGLLGILVGY 219 (224)
Q Consensus 207 ~i~v~ll~~~iG~ 219 (224)
+-.++++|+++|.
T Consensus 28 LT~~gll~~lv~l 40 (45)
T PF11688_consen 28 LTAVGLLGFLVGL 40 (45)
T ss_pred HHHHHHHHHHHHH
Confidence 3467788888874
No 300
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=27.11 E-value=1.4e+02 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=27.8
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCeEEEEE
Q 027355 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (224)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~Gii~P~~s~~I~V 69 (224)
.|++.|+|..+|.|- ++- +-+. + ...+.|.|.++..+.+
T Consensus 163 ~l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred EEEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEec
Confidence 399999999999875 333 2222 2 2457899999888876
No 301
>smart00605 CW CW domain.
Probab=26.99 E-value=81 Score=22.59 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=14.5
Q ss_pred EEEEEcC-CCCeEEEEEeecCCC
Q 027355 27 SMQLTNK-TDKFVAFKVKTTNPK 48 (224)
Q Consensus 27 ~l~L~N~-s~~~vaFKVKTT~p~ 48 (224)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3444444 468899999876554
No 302
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=26.98 E-value=3.5e+02 Score=22.08 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKS 197 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~~ 197 (224)
+++.+.|..|+++....+++.+.+-.+|..+|.....+
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D 143 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKD 143 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888899999988888899988888888765543
No 303
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.92 E-value=1.3e+02 Score=20.53 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++.+.+.+.+.+++.|..+.+.|.+.+..++
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777888888888888888888777766
No 304
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=26.78 E-value=74 Score=21.42 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027355 203 STVFVLLIGLLGILVGYL 220 (224)
Q Consensus 203 ~~~~~i~v~ll~~~iG~~ 220 (224)
.+++.++|+++.+++|..
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~ 22 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGAS 22 (58)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445455554444443
No 305
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.74 E-value=92 Score=27.52 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~ 188 (224)
...+..++..+.+||++|++.+.
T Consensus 85 ~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 85 LEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555555555555555444
No 306
>PRK02119 hypothetical protein; Provisional
Probab=26.52 E-value=1.8e+02 Score=20.21 Aligned_cols=33 Identities=6% Similarity=-0.011 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
++++...|.+-+.+++.+..+.+.|.+.+..+.
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346777778888888888888888887766554
No 307
>PRK00846 hypothetical protein; Provisional
Probab=26.49 E-value=2.1e+02 Score=20.34 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.|..|.+......+++.+|+.++..|+.+.
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666666555443
No 308
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=26.43 E-value=63 Score=22.18 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=9.5
Q ss_pred CchHHHHHHHHHHHHHH
Q 027355 201 GFSTVFVLLIGLLGILV 217 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~i 217 (224)
|+.++.+++++++++++
T Consensus 3 giG~~ElliI~vIalll 19 (64)
T PRK14860 3 GFGMPELIVILVIALVV 19 (64)
T ss_pred CccHHHHHHHHHHHHhh
Confidence 34555666666666543
No 309
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.34 E-value=1.5e+02 Score=26.71 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
.+.+.++.++.|.+.+.+|..++++++..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 10 KLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555444
No 310
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=26.26 E-value=1.4e+02 Score=26.11 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
..+++.++..|.+||++|+.|-+.||..
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666654
No 311
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=26.22 E-value=69 Score=21.89 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=9.4
Q ss_pred CchHHHHHHHHHHHHHH
Q 027355 201 GFSTVFVLLIGLLGILV 217 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~i 217 (224)
|+.+..+++++++++++
T Consensus 3 giG~~ElliIlvv~Llv 19 (63)
T PRK14859 3 GIGMPELIVILVIVLIV 19 (63)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 34555666666665543
No 312
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=25.88 E-value=50 Score=18.56 Aligned_cols=11 Identities=55% Similarity=1.108 Sum_probs=5.5
Q ss_pred CCchHHHHHHH
Q 027355 200 GGFSTVFVLLI 210 (224)
Q Consensus 200 ~gf~~~~~i~v 210 (224)
+||.+..++++
T Consensus 6 ~gf~livVLFI 16 (26)
T TIGR01732 6 GGFALIVVLFI 16 (26)
T ss_pred cchHHHHHHHH
Confidence 46665544333
No 313
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=25.86 E-value=2.4e+02 Score=19.81 Aligned_cols=18 Identities=6% Similarity=0.313 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027355 169 LTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~e 186 (224)
|.+.-+.|.++-..+++.
T Consensus 36 L~~kt~~L~~~a~~F~k~ 53 (89)
T PF00957_consen 36 LEDKTEELSDNAKQFKKN 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 333333344444444333
No 314
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.83 E-value=1.5e+02 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027355 175 SAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 175 ~~~~en~~L~~el~~lr~~~ 194 (224)
.+.++.+.|++++..||+..
T Consensus 69 ~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 69 ELEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36666666777777666543
No 315
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.82 E-value=2.1e+02 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L 183 (224)
.++.+|..+++.+.+|.-+|
T Consensus 37 ~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 37 EELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333
No 316
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.77 E-value=2e+02 Score=19.98 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++.+.+.+.+.+++.+..+.+.|.+.+..++
T Consensus 25 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 25 EELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46777778888888888888888888776655
No 317
>PRK14145 heat shock protein GrpE; Provisional
Probab=25.70 E-value=1.7e+02 Score=24.51 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
...+.+.+.+|+++...+.....+++.|.+.+|+...+
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888888888888876653
No 318
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.69 E-value=1.4e+02 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 027355 179 QNQKLRQELEFVR 191 (224)
Q Consensus 179 en~~L~~el~~lr 191 (224)
++.+|++|+..+.
T Consensus 117 ~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 117 EIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 319
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.66 E-value=2.3e+02 Score=20.59 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
++..++.+|.+|...+..|...-+.|....+
T Consensus 27 ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777889999999999999888888877544
No 320
>PRK14149 heat shock protein GrpE; Provisional
Probab=25.63 E-value=1.5e+02 Score=24.82 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+..|++++..+.....+++.|.+.+|+...
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~ 74 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLE 74 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777776544
No 321
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.63 E-value=1.4e+02 Score=20.09 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSA 176 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~ 176 (224)
++++.+.|..|+.|+.++
T Consensus 23 v~EL~~RIa~L~aEI~R~ 40 (59)
T PF06698_consen 23 VEELEERIALLEAEIARL 40 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555554444433
No 322
>PRK00295 hypothetical protein; Provisional
Probab=25.30 E-value=2.3e+02 Score=19.39 Aligned_cols=32 Identities=9% Similarity=-0.073 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++...|.+.+.+++.+..+.+.|.+.+..+.
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777777888888888888888877766654
No 323
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.12 E-value=2e+02 Score=20.64 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
....+..|.+++.+|.++|++|-..|+-..
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~ 65 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEI 65 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777666666443
No 324
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.03 E-value=1.1e+02 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=19.6
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNP 47 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p 47 (224)
.+-.|++.+-...-+-||||.++|
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~ 42 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTP 42 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCCh
Confidence 466788888666788999999998
No 325
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.00 E-value=4.5e+02 Score=23.28 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 027355 201 GFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
||++..+++ +++++++.++++
T Consensus 297 Gy~~~l~~m-~~~~~~~~~~fr 317 (322)
T COG0598 297 GYPIALILM-LLLALLLYLYFR 317 (322)
T ss_pred cHHHHHHHH-HHHHHHHHHHHH
Confidence 666555544 444444444444
No 326
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.99 E-value=2e+02 Score=21.46 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
..+|.+|..++..+..++.++.+.+..++
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555433
No 327
>PRK01203 prefoldin subunit alpha; Provisional
Probab=24.92 E-value=1.4e+02 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~ 185 (224)
++.-++++.+.+.+|.+.|+.
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~ 28 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNK 28 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 328
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=24.84 E-value=77 Score=19.89 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhcC
Q 027355 208 LLIGLLGILVGYLVKT 223 (224)
Q Consensus 208 i~v~ll~~~iG~~~~~ 223 (224)
+.+++.+.+.+||++|
T Consensus 21 ~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 21 FTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666677777665
No 329
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.83 E-value=1.7e+02 Score=26.08 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 169 LTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
|..|...|...|++|+.....|.+
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 330
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.77 E-value=1.9e+02 Score=24.78 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.++.+..+-|++|...||+|+..++++
T Consensus 6 a~~~d~L~iLkeef~aLQke~~E~~kk 32 (280)
T KOG4591|consen 6 AKKEDHLDILKEEFNALQKEHAELEKK 32 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888898888888876
No 331
>PF15294 Leu_zip: Leucine zipper
Probab=24.75 E-value=1.1e+02 Score=27.07 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 027355 178 QQNQKLRQELEFVRK 192 (224)
Q Consensus 178 ~en~~L~~el~~lr~ 192 (224)
+|..+|+.+|..+|.
T Consensus 160 ~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 160 DEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555666666665
No 332
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=24.63 E-value=98 Score=19.87 Aligned_cols=22 Identities=27% Similarity=0.278 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L 183 (224)
+...+..|+||.+.|++-|+.|
T Consensus 16 l~vrv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 16 LRVRVSELEEEVRTLRKINRDL 37 (48)
T ss_pred heeeHHHHHHHHHHHHHHhHHH
Confidence 4445678888888887777655
No 333
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.46 E-value=1e+02 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr 191 (224)
++++....++.|.+.+++|+++|-
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHH
Confidence 333444444444444455554443
No 334
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.45 E-value=73 Score=24.34 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=15.7
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 027355 201 GFSTVFVLLIGLLGILVGYLV 221 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~ 221 (224)
|-+.|.+|+..|||+..|++.
T Consensus 71 gTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 71 GTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 445677888888888888763
No 335
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=24.41 E-value=1.1e+02 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLR 184 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~ 184 (224)
++.+.|-.|-+++..|++|++.|+
T Consensus 60 ~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 60 EGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555555443
No 336
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.33 E-value=1.7e+02 Score=26.85 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=32.2
Q ss_pred eEEeCCeeeecccCCCceeEEEEEE---------cCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEE
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLT---------NKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~---------N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~V 69 (224)
-++.|...+|-+..++. .--|.++ |+-+=+|++=+--|- =+.|++=+|.|-.+-.|.|
T Consensus 33 ~sL~P~t~tf~~~Dg~s-~~ll~~~GTIp~~~~G~tYnIPV~iWlldty----P~~pP~c~VnPT~~M~ik~ 99 (365)
T KOG2391|consen 33 KSLRPKTDTFTHNDGRS-RLLLQLDGTIPVPYQGVTYNIPVIIWLLDTY----PYYPPICYVNPTSTMIIKV 99 (365)
T ss_pred cccCcccceEEecCCCc-cchhhccCcccccccCCcccceEEEEecccC----CCCCCeEEecCCchhhhHH
Confidence 35667666665544322 1222222 444556666555554 4567777787777766655
No 337
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=24.20 E-value=2.2e+02 Score=24.41 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCeEEEE-EeecCC-CcEEEeCCceeeCCCCeEEEEEE
Q 027355 26 CSMQLTNKTDKFVAFK-VKTTNP-KKYCVRPNTGIILPRTSCAVTVT 70 (224)
Q Consensus 26 ~~l~L~N~s~~~vaFK-VKTT~p-~~Y~VrP~~Gii~P~~s~~I~Vt 70 (224)
..|+++|+|..++.|- ++-... +.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 4599999999999765 432222 22322 3478999999888753
No 338
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=24.18 E-value=2.3e+02 Score=19.09 Aligned_cols=6 Identities=33% Similarity=1.370 Sum_probs=2.6
Q ss_pred HHHHHh
Q 027355 216 LVGYLV 221 (224)
Q Consensus 216 ~iG~~~ 221 (224)
+|||++
T Consensus 48 ~iGf~I 53 (61)
T PRK09400 48 LIGFII 53 (61)
T ss_pred HHHHHH
Confidence 344444
No 339
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=24.16 E-value=1.3e+02 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
.++..|++.|+.+.+.|+.||+.||....+
T Consensus 217 ~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 217 QHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 466778888888888888888888866543
No 340
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=24.15 E-value=1.6e+02 Score=25.11 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=28.9
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCeEEEEE
Q 027355 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (224)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~Gii~P~~s~~I~V 69 (224)
.|++.|+|..++.|- ++... +. +. +.|.|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~~-~~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLNS-HE--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEECC-cc--cC-CCceECCCCccEEEc
Confidence 599999999999765 55432 22 22 368999999998875
No 341
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.11 E-value=1.8e+02 Score=24.97 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 169 LTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
..+....+.+|...|+++.+.+|+.
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555555554
No 342
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.11 E-value=2e+02 Score=21.08 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
..+..+..++..+..+...+++++..++..
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666655555543
No 343
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.07 E-value=2e+02 Score=23.69 Aligned_cols=32 Identities=31% Similarity=0.329 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+....|..|.+++..|..+...|+.+.+.+.+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666555555554443
No 344
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=23.95 E-value=1.8e+02 Score=24.86 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=27.5
Q ss_pred EEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEE
Q 027355 27 SMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (224)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~V 69 (224)
.|++.|+|..+|.|---.-.-+. + ...+|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999988632222222 2 246899999988865
No 345
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=23.85 E-value=4.8e+02 Score=22.82 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHHHHHHHH
Q 027355 178 QQNQKLRQELEFVRKEIS-KSRAGGFSTVFVLLIGLLGILVGY 219 (224)
Q Consensus 178 ~en~~L~~el~~lr~~~~-~~~~~gf~~~~~i~v~ll~~~iG~ 219 (224)
++.++.++|++..-++.. -++.+.|+-.|-.++++++++.|-
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKAGIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 344444445444333222 122255665555555555555554
No 346
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=23.85 E-value=2.6e+02 Score=23.00 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
....+.+|+.++..+...-.+++.+|+.|++..++
T Consensus 129 ~~~~~~~l~~H~~kl~~~~ke~~~kLeeLekEe~k 163 (177)
T PF03234_consen 129 GKAELEELQEHRAKLEKEQKELKKKLEELEKEEKK 163 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999887654
No 347
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.85 E-value=76 Score=21.62 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhcC
Q 027355 207 VLLIGLLGILVGYLVKT 223 (224)
Q Consensus 207 ~i~v~ll~~~iG~~~~~ 223 (224)
+++-|++.+-+||++.+
T Consensus 10 i~lcALIf~pLgyl~~r 26 (62)
T TIGR03493 10 VLLCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHhHHHHHHh
Confidence 46778999999998754
No 348
>PRK14159 heat shock protein GrpE; Provisional
Probab=23.84 E-value=1.7e+02 Score=24.10 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+++..|+++...+.+...+++.|.+.+|+...
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~ 61 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRME 61 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888888888888877654
No 349
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.82 E-value=99 Score=23.12 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 027355 210 IGLLGILVGY 219 (224)
Q Consensus 210 v~ll~~~iG~ 219 (224)
..++|+++|+
T Consensus 80 ~lllGv~~G~ 89 (100)
T TIGR02230 80 MLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 350
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=23.72 E-value=98 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=12.6
Q ss_pred eeEEEEEEcCCCCeEEEEE
Q 027355 24 SSCSMQLTNKTDKFVAFKV 42 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKV 42 (224)
+...-++...+...||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4444445555678999996
No 351
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=23.69 E-value=2.5e+02 Score=23.22 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=23.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLT----EEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~----eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.+....+|+ .+++.|++++.+|+.+|+.-+++.
T Consensus 116 eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKL 153 (179)
T PF13942_consen 116 EERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKL 153 (179)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555 456678899999999888766654
No 352
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.68 E-value=2.3e+02 Score=22.28 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.+.+...++..|+.+|...|..|..+++.+....
T Consensus 25 ~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 25 QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666777777777777777777666543
No 353
>PHA03240 envelope glycoprotein M; Provisional
Probab=23.60 E-value=81 Score=27.05 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 027355 200 GGFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
.....|.+++|++|.++|=++++
T Consensus 210 aaH~~WIiilIIiIiIIIL~cfK 232 (258)
T PHA03240 210 AAHIAWIFIAIIIIIVIILFFFK 232 (258)
T ss_pred cchHhHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777764
No 354
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=23.56 E-value=53 Score=22.32 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027355 172 EKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 172 E~~~~~~en~~L~~el~~ 189 (224)
+...+++|++.|++|+.+
T Consensus 3 ~~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER 20 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 344556666777777665
No 355
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.52 E-value=2.3e+02 Score=21.32 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+...+..|+++...+.+++++|++++......
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777776666655443
No 356
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=23.51 E-value=1.3e+02 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 171 EEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+|.+.|+.|..++.+|+.-||+...
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLa 68 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLA 68 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666788888888888888887654
No 357
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=23.50 E-value=53 Score=21.14 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027355 204 TVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 204 ~~~~i~v~ll~~~iG~~~~ 222 (224)
+.+=++.|++-+++||++.
T Consensus 14 ~lP~iv~AilIl~vG~~va 32 (53)
T PF05552_consen 14 YLPNIVGAILILIVGWWVA 32 (53)
T ss_dssp GHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444666777777777654
No 358
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.40 E-value=1.5e+02 Score=26.06 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 027355 176 AMQQNQKLRQELEF 189 (224)
Q Consensus 176 ~~~en~~L~~el~~ 189 (224)
+++||++|++.|..
T Consensus 96 l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 96 LKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHhcC
Confidence 56666666665443
No 359
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.35 E-value=1.8e+02 Score=24.80 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+..++..+|++|..+...+.++++.+.+.|++..
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544
No 360
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=23.30 E-value=1.4e+02 Score=18.01 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027355 205 VFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 205 ~~~i~v~ll~~~iG~~~~ 222 (224)
|.+++.+|=-++.||+++
T Consensus 18 Wa~llLaINflVAayYFh 35 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYFH 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhe
Confidence 667888888888899876
No 361
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=23.24 E-value=2.1e+02 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.280 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~ 185 (224)
+|.+|++|+..+++.+++=++
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~ 22 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKE 22 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444333
No 362
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.19 E-value=1e+02 Score=20.85 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
+++.+++.++|+|+-
T Consensus 43 ~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 43 VALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHhh
Confidence 356677888888864
No 363
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.12 E-value=2.9e+02 Score=19.84 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.|-+|+..+..++.+|.+.+..|++.
T Consensus 58 eLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 58 ELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555666666665554
No 364
>PRK00846 hypothetical protein; Provisional
Probab=23.01 E-value=2.5e+02 Score=19.92 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++.+.+.+.+.+++.++.+.+.|.+.+..+.
T Consensus 30 e~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 30 TELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777788888888888888888888777665
No 365
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.86 E-value=1.9e+02 Score=23.26 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 027355 201 GFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
|.....++.=+++|++++|++.
T Consensus 127 GH~p~eV~~G~~lGI~i~~i~~ 148 (153)
T COG1963 127 GHTPLEVFAGLLLGILIAWIFY 148 (153)
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 6678889899999999999864
No 366
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=22.83 E-value=2.3e+02 Score=21.24 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHh
Q 027355 209 LIGLLGILVGYLV 221 (224)
Q Consensus 209 ~v~ll~~~iG~~~ 221 (224)
-++|.|+++|-+.
T Consensus 55 gl~L~~~v~gIY~ 67 (100)
T PF09813_consen 55 GLALGAFVVGIYA 67 (100)
T ss_pred HHHHHHHHHHHHh
Confidence 3445555555543
No 367
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=22.69 E-value=1.1e+02 Score=20.80 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 027355 203 STVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 203 ~~~~~i~v~ll~~~iG~~~~ 222 (224)
.+..+++.+++|+++=|+.|
T Consensus 18 r~~~~~~a~~lgl~~ly~vG 37 (60)
T TIGR02459 18 RLAAALVAALLGLFLVYFVG 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888888876
No 368
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.68 E-value=1.7e+02 Score=26.26 Aligned_cols=34 Identities=38% Similarity=0.425 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
....+..|+++...++.|...+++|+..+|+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIE 37 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788999999999999999999999888775
No 369
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=2.2e+02 Score=30.68 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=54.2
Q ss_pred ceEEeCCeeeecccC-CCceeEEEEEEcCCCCeEEEEEeecC-CCcEEEe---CCceeeCCCCeEEEE-EEecCCccCCC
Q 027355 6 LVNIQPSELKFPFEL-KKQSSCSMQLTNKTDKFVAFKVKTTN-PKKYCVR---PNTGIILPRTSCAVT-VTMQAQKEAPP 79 (224)
Q Consensus 6 lL~i~P~eL~F~~~~-~~~~~~~l~L~N~s~~~vaFKVKTT~-p~~Y~Vr---P~~Gii~P~~s~~I~-Vtlq~~~~~p~ 79 (224)
-|.+.|.++.|...+ +|-+++.|.|.|.-+++|.-|=-+-+ +-+|+-+ -|-+.|+||.-..|- |.+.|.
T Consensus 526 sL~~iPeqi~f~ptFPgK~v~~~L~i~nSF~~~v~v~~i~l~edvrf~fk~f~~n~~~l~pg~ltk~griyFdP~----- 600 (1626)
T KOG3620|consen 526 SLEIIPEQISFKPTFPGKMVTAVLSIRNSFTHPVHVKGISLAEDVRFRFKDFNANGTTLAPGTLTKVGRIYFDPA----- 600 (1626)
T ss_pred eeEechhhhccCCCCCcceeeeeeehhcccCcceeeeeeeeccCcceeeecccCCccccccccccccceEEeccc-----
Confidence 477889999996433 68899999999999999877743333 4566655 577899999876654 333332
Q ss_pred CCCCCCeEEE
Q 027355 80 DFQCKDKFLL 89 (224)
Q Consensus 80 ~~~~kdKFlV 89 (224)
..|.|...|
T Consensus 601 -a~CgdhCYi 609 (1626)
T KOG3620|consen 601 -AVCGDHCYI 609 (1626)
T ss_pred -ccccCeeEe
Confidence 356655443
No 370
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=22.50 E-value=53 Score=29.28 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcC
Q 027355 200 GGFSTVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~iG~~~~~ 223 (224)
+.++++.+|-++++-++||||+.|
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeE
Confidence 356677777777778889998865
No 371
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.49 E-value=1.1e+02 Score=19.90 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhcC
Q 027355 208 LLIGLLGILVGYLVKT 223 (224)
Q Consensus 208 i~v~ll~~~iG~~~~~ 223 (224)
+++++++++|-.++++
T Consensus 11 iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 11 IVMGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 5566666666666553
No 372
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=22.47 E-value=3e+02 Score=23.33 Aligned_cols=29 Identities=14% Similarity=0.444 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.-+..+...+.++|..|+++++.|++...
T Consensus 33 D~V~~dye~~l~e~~~l~~~i~~L~~~l~ 61 (212)
T COG3599 33 DDVIDDYEQLLDENEDLEDEIDELKEELK 61 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444
No 373
>PRK15396 murein lipoprotein; Provisional
Probab=22.46 E-value=2.4e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~ 185 (224)
++++.++++.|..+.+++....+.++.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444444444443
No 374
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.41 E-value=2e+02 Score=22.95 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+++..+.+..++++.++++.+...|..-+..
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e 38 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAAISE 38 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444443333
No 375
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=22.40 E-value=1.3e+02 Score=17.66 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
+...++|+.+||++=
T Consensus 11 ~~lvlvGla~Gf~LL 25 (31)
T PF08041_consen 11 FGLVLVGLALGFVLL 25 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 566778888998763
No 376
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.36 E-value=2.5e+02 Score=21.90 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.+...+.++..+...+...+++|+.+++.+.+.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665555554443
No 377
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.26 E-value=1.8e+02 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
.+++..|+.+...+.....+++.|++.+|++..+
T Consensus 42 ~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~r 75 (193)
T COG0576 42 QQEIAELEAQLEELKDKYLRAQAEFENLRKRTER 75 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888888876653
No 378
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.19 E-value=2.1e+02 Score=22.69 Aligned_cols=28 Identities=25% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++..+--+.+.|.+|.+.|++++..|+.
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~ 31 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDM 31 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666554
No 379
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=22.17 E-value=2.3e+02 Score=18.29 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=39.3
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEe-CCce---eeCCCCeEEEEEEe
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-PNTG---IILPRTSCAVTVTM 71 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~G---ii~P~~s~~I~Vtl 71 (224)
|.|-|..+.+.........+.+.-.--.....-+.+++..-....+. ++.. .+.+|+.+.+.+..
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 46778877774211235555555554557777788888877664444 4444 68899988887754
No 380
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=21.98 E-value=51 Score=25.16 Aligned_cols=14 Identities=43% Similarity=0.842 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 027355 207 VLLIGLLGILVGYL 220 (224)
Q Consensus 207 ~i~v~ll~~~iG~~ 220 (224)
+++.+++|.++|.+
T Consensus 78 v~~ag~~Gy~~GK~ 91 (111)
T PF07051_consen 78 VAFAGILGYFVGKI 91 (111)
T ss_pred HHHHHHHHHhhhHH
Confidence 34444445555544
No 381
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=21.94 E-value=1.3e+02 Score=17.81 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhcC
Q 027355 208 LLIGLLGILVGYLVKT 223 (224)
Q Consensus 208 i~v~ll~~~iG~~~~~ 223 (224)
....++|+.+||++-|
T Consensus 13 ~~LvlvGlalGf~LLk 28 (32)
T PRK11876 13 WVLIPVGLAGGALLLK 28 (32)
T ss_pred HHHHHHHHHHHHHhee
Confidence 3455668999998744
No 382
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.93 E-value=1.3e+02 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+|+.|+.|.+.|++|...|+.++.
T Consensus 26 ~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 26 QIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677666666666666665544
No 383
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=21.88 E-value=1.2e+02 Score=19.24 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el 187 (224)
..|..|+.+...|..||..|+++.
T Consensus 21 ~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 21 IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 456677777777777777777653
No 384
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=21.68 E-value=1.7e+02 Score=21.67 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L 183 (224)
+++.+.|.+|++|+..+.-|-.+.
T Consensus 34 ~EAMaMI~RLQ~EKAa~~mEA~Qy 57 (94)
T PF04576_consen 34 SEAMAMILRLQEEKAAVEMEARQY 57 (94)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 478899999999998877666555
No 385
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.68 E-value=7.3e+02 Score=23.92 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=49.3
Q ss_pred cCCCceeEEEEEEcCCCCeE-EEEEeecCCCcEEE--eCC-ceeeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEec
Q 027355 19 ELKKQSSCSMQLTNKTDKFV-AFKVKTTNPKKYCV--RPN-TGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVA 94 (224)
Q Consensus 19 ~~~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~V--rP~-~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdKFlVqs~~~ 94 (224)
..+......+.|.|..+-++ --|++-..|.-..+ .|+ .--|+||++.+|.++... |++....|++.-..+..
T Consensus 394 taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v----P~~a~aGdY~i~i~~ks 469 (513)
T COG1470 394 TAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV----PEDAGAGDYRITITAKS 469 (513)
T ss_pred cCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc----CCCCCCCcEEEEEEEee
Confidence 34667788899999986544 34555556765554 465 346789999999999874 55555667776655554
Q ss_pred C
Q 027355 95 P 95 (224)
Q Consensus 95 ~ 95 (224)
+
T Consensus 470 D 470 (513)
T COG1470 470 D 470 (513)
T ss_pred c
Confidence 3
No 386
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.65 E-value=2.6e+02 Score=18.70 Aligned_cols=19 Identities=47% Similarity=0.571 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~ 185 (224)
.+|..|..+|++||..|+.
T Consensus 36 ~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555543
No 387
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.62 E-value=77 Score=22.96 Aligned_cols=14 Identities=64% Similarity=1.044 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHh
Q 027355 208 LLIGLLGILVGYLV 221 (224)
Q Consensus 208 i~v~ll~~~iG~~~ 221 (224)
.+|+++||++|+=+
T Consensus 32 AlvGllGilvGeq~ 45 (93)
T COG4317 32 ALVGLLGILVGEQI 45 (93)
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999844
No 388
>PHA00024 IX minor coat protein
Probab=21.62 E-value=97 Score=18.44 Aligned_cols=17 Identities=12% Similarity=-0.002 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027355 206 FVLLIGLLGILVGYLVK 222 (224)
Q Consensus 206 ~~i~v~ll~~~iG~~~~ 222 (224)
.++-..+-|.++||.++
T Consensus 3 ~~l~~ffgA~ilG~~l~ 19 (33)
T PHA00024 3 SYLGYFFGAYILGWALF 19 (33)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555667777787664
No 389
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=21.61 E-value=3.4e+02 Score=20.05 Aligned_cols=35 Identities=6% Similarity=0.237 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+++++++|..+..|+-.|..+...+=.++..+++.
T Consensus 6 L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~ 40 (102)
T TIGR01801 6 LEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSA 40 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888877777777777776666666654
No 390
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=21.61 E-value=83 Score=22.30 Aligned_cols=13 Identities=8% Similarity=0.439 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhcC
Q 027355 211 GLLGILVGYLVKT 223 (224)
Q Consensus 211 ~ll~~~iG~~~~~ 223 (224)
++++.++||++|.
T Consensus 43 al~a~~l~w~lg~ 55 (75)
T PF01004_consen 43 ALAAVALAWMLGS 55 (75)
T ss_pred HHHHHHHHHHHcC
Confidence 3445556666654
No 391
>PRK02944 OxaA-like protein precursor; Validated
Probab=21.59 E-value=4.5e+02 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 027355 181 QKLRQELEFVRKE 193 (224)
Q Consensus 181 ~~L~~el~~lr~~ 193 (224)
+++++|+..|-|+
T Consensus 111 ~k~~~e~~~Lyk~ 123 (255)
T PRK02944 111 QKLQQEMMQLFQK 123 (255)
T ss_pred HHHHHHHHHHHHH
Confidence 5567776666555
No 392
>PRK04406 hypothetical protein; Provisional
Probab=21.58 E-value=2.5e+02 Score=19.63 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++...|.+-+.+++.+..+.+.|.+.+..+.
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46666777777777777777777777665543
No 393
>PRK14164 heat shock protein GrpE; Provisional
Probab=21.54 E-value=1.8e+02 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
..+..|++++..+.....+++.|.+.+|++..
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~ 108 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTE 108 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777778877777654
No 394
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.54 E-value=5.5e+02 Score=25.61 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027355 206 FVLLIGLLGILVGYL 220 (224)
Q Consensus 206 ~~i~v~ll~~~iG~~ 220 (224)
.+++.+++|+++|..
T Consensus 433 ~l~~~~~~gl~lg~~ 447 (754)
T TIGR01005 433 IVGLAAVLGLLLGAI 447 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555543
No 395
>PF14209 DUF4321: Domain of unknown function (DUF4321)
Probab=21.51 E-value=77 Score=20.40 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
=+..++|+++|++++
T Consensus 35 nl~sIlGiila~~lY 49 (49)
T PF14209_consen 35 NLASILGIILAIWLY 49 (49)
T ss_pred cHHHHHHHHHHhhhC
Confidence 366777888887763
No 396
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.50 E-value=2.2e+02 Score=24.33 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
...+..|++++..++++++..++++..+|
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 397
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.43 E-value=4.4e+02 Score=22.62 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------CCCCCchHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK--------------SRAGGFSTVFVLLIGLLG 214 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~--------------~~~~gf~~~~~i~v~ll~ 214 (224)
.+++.+|++.+..+..-..++|..+..++-..-- -.-.||.-.++|.+.++|
T Consensus 14 ~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llg 79 (251)
T COG5415 14 TADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLG 79 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh
Confidence 3445555555555555555555555444432110 022466666666666666
No 398
>PF14645 Chibby: Chibby family
Probab=21.32 E-value=1.4e+02 Score=22.74 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L 183 (224)
...+..+|+||.+.|+-+++-|
T Consensus 76 l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666555
No 399
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=21.30 E-value=2.4e+02 Score=27.58 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+...+|..|++++..+...++.++.||.+.+...
T Consensus 374 ~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 374 NQFDTIEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566777777777777777788888888877654
No 400
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.25 E-value=2.4e+02 Score=24.10 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
++.+++..|..|...+...|++|+..+..
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~ 81 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVAS 81 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666555444443
No 401
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=21.18 E-value=3.2e+02 Score=21.94 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
..+..++.++.+|.++.+.|-+.|.++.
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A 96 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKA 96 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655555443
No 402
>PHA01750 hypothetical protein
Probab=20.87 E-value=3e+02 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 169 LTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
|.-|++.+....+.|+++...++++
T Consensus 47 L~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 47 LKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3333333333333444444445443
No 403
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.80 E-value=1.4e+02 Score=17.15 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
.=+.++.+++||+.+
T Consensus 7 ~g~llv~lLl~YLvY 21 (29)
T PRK14750 7 CGALLVLLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555677777754
No 404
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.79 E-value=1.7e+02 Score=26.52 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+++|..+.+.+..|++++++|+.++..+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444555555555555566555555443
No 405
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.77 E-value=2e+02 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el 187 (224)
..|.+-+.-|+.|+++|+-|+
T Consensus 28 ~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 28 AELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666553
No 406
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.69 E-value=1.3e+02 Score=24.94 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.3
Q ss_pred CeEEEEEEec
Q 027355 85 DKFLLLSVVA 94 (224)
Q Consensus 85 dKFlVqs~~~ 94 (224)
+...+|.+-.
T Consensus 18 ~~~~~q~vS~ 27 (189)
T PF10211_consen 18 GQLWIQFVSS 27 (189)
T ss_pred CeeeEeeeCC
Confidence 3444444443
No 407
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.60 E-value=2.7e+02 Score=24.62 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhcC
Q 027355 208 LLIGLLGILVGYLVKT 223 (224)
Q Consensus 208 i~v~ll~~~iG~~~~~ 223 (224)
++++++++++.+++++
T Consensus 305 ~im~~i~~~~~~~fkr 320 (324)
T PRK09546 305 LLLVVLIGGVAWWLKR 320 (324)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455555555566554
No 408
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=20.54 E-value=33 Score=29.38 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++..|..|.+|..+|++||++|+.|-.+|.
T Consensus 133 dLrrlVe~L~aeNErLr~EnkqL~ae~arL~ 163 (243)
T PF08961_consen 133 DLRRLVEFLLAENERLRRENKQLKAENARLL 163 (243)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566677777777777777777766663
No 409
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.53 E-value=3.1e+02 Score=20.34 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+++......|+++++.+.+++.+|++.+..+.....
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~ 37 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKE 37 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=20.51 E-value=1.5e+02 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=12.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 027355 200 GGFSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 200 ~gf~~~~~i~v~ll~~~iG~~~~ 222 (224)
++.+.+++.++.++..++-|+++
T Consensus 51 ~~~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 51 GGNSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHcC
Confidence 34555555555555555556554
No 411
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.48 E-value=1e+02 Score=29.58 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.++|.+|+.|+++|++|...|++.++...++.
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~s 61 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEKHS 61 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHhh
Confidence 34788888888888888888887776665543
No 412
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.42 E-value=2.9e+02 Score=20.50 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
-|+.-...+..+|+.|..||..+|...
T Consensus 19 LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 19 LLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555567788888988988888654
No 413
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=20.36 E-value=1.1e+02 Score=20.75 Aligned_cols=16 Identities=13% Similarity=0.220 Sum_probs=9.0
Q ss_pred CchHHHHHHHHHHHHH
Q 027355 201 GFSTVFVLLIGLLGIL 216 (224)
Q Consensus 201 gf~~~~~i~v~ll~~~ 216 (224)
|..+..++++++++++
T Consensus 4 ~ig~~ElliI~vi~ll 19 (61)
T PRK14861 4 NIGFPGLILILVVALI 19 (61)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4455566666666554
No 414
>PHA00649 hypothetical protein
Probab=20.31 E-value=2.6e+02 Score=19.62 Aligned_cols=36 Identities=31% Similarity=0.637 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHH
Q 027355 178 QQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVG 218 (224)
Q Consensus 178 ~en~~L~~el~~lr~~~~~~~~~gf~~~~~i~v~ll~~~iG 218 (224)
.|.+..++++-.+|+..+... .||-. +|+|++.-||
T Consensus 34 ~~VEEFr~D~~~~Rr~RKA~D-~G~L~----~VGL~~~~iG 69 (83)
T PHA00649 34 EQVEEFREDLRFGRRMRKAAD-HGFLA----LVGLVAVALG 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cchHH----HHHHHHHHHH
Confidence 455677777777777655433 45542 3444444444
No 415
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=20.29 E-value=2.4e+02 Score=24.26 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=27.4
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCeEEEEE
Q 027355 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (224)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~Gii~P~~s~~I~V 69 (224)
.|++.|+|..+|.|- ++- +-+. + .+.+.|.|.++..+.+
T Consensus 170 ~l~v~NpTPYyvtl~~l~~-~~~~--~-~~~~miaPfs~~~~~~ 209 (237)
T PRK15224 170 KLKVENPTPFYMNLASVTV-GGKP--I-TGLEYIPPFADKTLNM 209 (237)
T ss_pred EEEEECCCCcEEEeEeEEE-CCcc--c-CCceeECCCCccEEEc
Confidence 599999999999864 443 2222 2 2257899999888764
No 416
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.25 E-value=2.6e+02 Score=20.37 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
..+++-.|.+++..+..+.+.|+.+...+-+..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556666666666666666666655555443
No 417
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.25 E-value=2.7e+02 Score=19.70 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
.+..-+..|++|...++-+.+.|+.++..+.
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d 44 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMD 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556678888888888888887776666443
No 418
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=20.21 E-value=3.1e+02 Score=18.96 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+..+++|..+..++-.|..+...+-.++..+++.
T Consensus 3 ~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 3 DTLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777777777777777666654
No 419
>PRK00736 hypothetical protein; Provisional
Probab=20.20 E-value=3e+02 Score=18.82 Aligned_cols=32 Identities=3% Similarity=0.029 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++...|.+-+.+++.|..+.+.|.+.+..+.
T Consensus 22 e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 22 EELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777888888888888888877766543
No 420
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.06 E-value=2e+02 Score=20.92 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027355 173 KTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 173 ~~~~~~en~~L~~el~~lr 191 (224)
+..++.....|+++-..|+
T Consensus 77 i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 77 IEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 421
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.05 E-value=2.9e+02 Score=21.54 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++.+.|..|+.|+..+..-+..|...+.+|..
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999777766666655555443
No 422
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=20.03 E-value=61 Score=30.03 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=16.7
Q ss_pred CchHHHHHHHH-HHHHHHHHHhcC
Q 027355 201 GFSTVFVLLIG-LLGILVGYLVKT 223 (224)
Q Consensus 201 gf~~~~~i~v~-ll~~~iG~~~~~ 223 (224)
|.++.-|++|+ |+|||.-|||-+
T Consensus 371 GIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 371 GISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eeeehhHHHHHHHHHHHhhheeec
Confidence 67777665555 888888888754
Done!