Query 027355
Match_columns 224
No_of_seqs 205 out of 682
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 1.6E-38 5.3E-43 254.8 11.9 134 3-141 15-152 (152)
2 2cri_A Vesicle-associated memb 100.0 9.9E-37 3.4E-41 243.1 17.1 123 4-130 12-136 (147)
3 1z9l_A Vesicle-associated memb 100.0 2.8E-36 9.5E-41 235.1 15.8 122 1-126 4-127 (128)
4 1msp_A MSP, major sperm protei 100.0 2.2E-33 7.5E-38 218.3 15.7 118 5-126 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 2E-29 6.9E-34 191.1 12.8 103 7-123 3-105 (109)
6 1m1s_A WR4; structural genomic 100.0 1E-28 3.5E-33 188.7 14.8 106 5-124 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.5 6.3E-07 2.2E-11 68.0 8.7 75 11-91 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.3 2.9E-06 1E-10 62.8 7.9 71 4-74 7-81 (112)
9 3qbt_B Inositol polyphosphate 98.2 1.8E-05 6.1E-10 61.7 10.5 70 4-73 24-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.00026 8.8E-09 63.4 10.3 70 5-74 28-104 (366)
11 2qsv_A Uncharacterized protein 96.9 0.0041 1.4E-07 51.4 8.9 69 6-75 2-71 (220)
12 2qsv_A Uncharacterized protein 96.5 0.013 4.3E-07 48.4 9.1 67 5-74 118-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 95.0 0.43 1.5E-05 40.4 12.7 109 7-129 30-148 (257)
14 2co7_B SAFB chaperone, putativ 92.9 1.1 3.9E-05 36.8 10.9 116 7-130 14-135 (221)
15 4ay0_A Chaperone protein CAF1M 92.9 2.8 9.5E-05 34.4 13.3 109 7-129 14-129 (218)
16 2xg5_A PAPD, chaperone protein 92.3 1.8 6.2E-05 35.5 11.4 110 7-130 2-120 (218)
17 4djm_A DRAB; chaperone, PILI; 91.7 1.6 5.3E-05 36.5 10.4 84 7-96 24-112 (239)
18 1klf_A FIMC chaperone, chapero 91.6 4.6 0.00016 32.7 15.0 112 7-130 2-120 (205)
19 1l4i_A SFAE protein; periplasm 91.4 5 0.00017 32.5 14.1 112 7-130 2-120 (206)
20 2akf_A Coronin-1A; coiled coil 88.4 0.61 2.1E-05 26.1 3.4 29 166-194 1-29 (32)
21 3gfu_C Chaperone protein FAEE; 88.3 9.7 0.00033 31.3 15.0 107 7-129 2-115 (224)
22 1nlw_A MAD protein, MAX dimeri 88.2 1.2 4E-05 30.9 5.8 36 159-194 42-77 (80)
23 1nkp_B MAX protein, MYC proto- 87.1 1.9 6.3E-05 29.8 6.3 38 159-196 42-79 (83)
24 2yy0_A C-MYC-binding protein; 85.8 1.9 6.4E-05 27.6 5.2 30 165-194 20-49 (53)
25 1yew_A Particulate methane mon 85.6 5.3 0.00018 35.4 9.7 67 6-74 249-337 (382)
26 3m48_A General control protein 85.4 1.6 5.4E-05 25.1 4.2 28 167-194 3-30 (33)
27 2r39_A FIXG-related protein; s 85.4 4.2 0.00015 29.7 7.9 50 24-73 33-83 (118)
28 3c3g_A Alpha/beta peptide with 83.9 2.9 0.0001 23.9 4.8 28 167-194 3-30 (33)
29 4dzn_A Coiled-coil peptide CC- 83.7 3.2 0.00011 23.1 4.8 27 165-191 3-29 (33)
30 2oxj_A Hybrid alpha/beta pepti 83.1 3.6 0.00012 23.7 5.0 29 167-195 4-32 (34)
31 1t2k_D Cyclic-AMP-dependent tr 82.2 3.9 0.00013 26.5 5.8 29 163-191 28-56 (61)
32 3c3f_A Alpha/beta peptide with 81.8 3.9 0.00013 23.5 4.8 28 167-194 4-31 (34)
33 1uo4_A General control protein 81.7 3.7 0.00013 23.7 4.7 28 167-194 4-31 (34)
34 2l5g_B Putative uncharacterize 81.6 5 0.00017 24.3 5.5 35 160-194 5-39 (42)
35 1hjb_A Ccaat/enhancer binding 81.1 3.7 0.00013 29.0 5.7 35 161-195 40-74 (87)
36 1dh3_A Transcription factor CR 80.0 3.4 0.00012 26.5 4.8 30 164-193 22-51 (55)
37 1gu4_A CAAT/enhancer binding p 79.7 4 0.00014 28.1 5.4 32 162-193 41-72 (78)
38 2wt7_A Proto-oncogene protein 79.5 5.1 0.00018 26.2 5.7 29 165-193 24-52 (63)
39 1ci6_A Transcription factor AT 78.8 5.7 0.00019 26.1 5.7 30 162-191 28-57 (63)
40 1am9_A Srebp-1A, protein (ster 78.8 4.4 0.00015 28.0 5.4 33 159-191 45-77 (82)
41 3rfr_A PMOB; membrane, oxidore 78.3 8.1 0.00028 34.6 8.2 66 6-74 283-369 (419)
42 2jee_A YIIU; FTSZ, septum, coi 77.8 5.6 0.00019 27.7 5.6 31 159-189 15-45 (81)
43 2wt7_A Proto-oncogene protein 77.6 5.2 0.00018 26.2 5.2 35 160-194 26-60 (63)
44 2bni_A General control protein 77.5 5.3 0.00018 23.0 4.5 28 167-194 4-31 (34)
45 2dgc_A Protein (GCN4); basic d 77.4 5 0.00017 26.4 5.1 31 164-194 30-60 (63)
46 1a93_B MAX protein, coiled coi 77.0 4.7 0.00016 23.3 4.2 27 162-188 5-31 (34)
47 1go4_E MAD1 (mitotic arrest de 76.7 6.1 0.00021 28.6 5.8 30 165-194 13-42 (100)
48 1kd8_B GABH BLL, GCN4 acid bas 76.6 6.6 0.00022 22.9 4.7 29 167-195 4-32 (36)
49 1nkp_A C-MYC, MYC proto-oncoge 76.4 6.3 0.00021 27.6 5.7 36 159-194 47-82 (88)
50 1kd8_A GABH AIV, GCN4 acid bas 76.4 6.1 0.00021 23.0 4.6 28 167-194 4-31 (36)
51 1uii_A Geminin; human, DNA rep 76.3 7 0.00024 27.3 5.7 34 161-194 43-76 (83)
52 2yy0_A C-MYC-binding protein; 75.4 4.3 0.00015 25.8 4.2 33 156-188 18-50 (53)
53 1t2k_D Cyclic-AMP-dependent tr 74.9 7.1 0.00024 25.2 5.3 31 164-194 22-52 (61)
54 1jnm_A Proto-oncogene C-JUN; B 74.6 3.3 0.00011 27.0 3.6 30 165-194 23-52 (62)
55 2wt7_B Transcription factor MA 74.6 7.1 0.00024 27.7 5.6 33 161-193 52-84 (90)
56 2wg5_A General control protein 74.3 3.8 0.00013 29.9 4.3 28 166-193 9-36 (109)
57 2wq1_A General control protein 74.0 9.5 0.00033 21.8 4.9 28 167-194 3-30 (33)
58 3w03_C DNA repair protein XRCC 73.9 5.6 0.00019 31.9 5.5 34 159-192 147-180 (184)
59 1jnm_A Proto-oncogene C-JUN; B 73.8 7.8 0.00027 25.2 5.3 34 160-193 25-58 (62)
60 1nkp_A C-MYC, MYC proto-oncoge 73.8 5.1 0.00017 28.1 4.7 31 161-191 56-86 (88)
61 1fmh_A General control protein 73.5 7 0.00024 21.7 4.1 27 166-192 3-29 (33)
62 1gd2_E Transcription factor PA 73.2 6 0.0002 26.7 4.7 33 161-193 33-65 (70)
63 1ci6_A Transcription factor AT 72.9 8.2 0.00028 25.3 5.2 32 163-194 22-53 (63)
64 1hlo_A Protein (transcription 72.3 4.5 0.00016 27.6 4.1 26 160-185 53-78 (80)
65 2wuj_A Septum site-determining 71.9 5.8 0.0002 25.5 4.3 32 161-192 24-55 (57)
66 1go4_E MAD1 (mitotic arrest de 71.7 4 0.00014 29.6 3.7 32 158-189 13-44 (100)
67 2hy6_A General control protein 71.2 10 0.00035 21.8 4.6 28 167-194 4-31 (34)
68 1t6f_A Geminin; coiled-coil, c 70.1 6.8 0.00023 22.8 3.7 23 162-184 12-34 (37)
69 2r2v_A GCN4 leucine zipper; co 69.4 14 0.00047 21.3 4.9 28 167-194 4-31 (34)
70 2w6b_A RHO guanine nucleotide 69.2 14 0.00048 23.6 5.4 28 162-189 8-35 (56)
71 1nlw_A MAD protein, MAX dimeri 69.0 6.2 0.00021 27.2 4.1 27 162-188 52-78 (80)
72 1gu4_A CAAT/enhancer binding p 68.8 13 0.00043 25.6 5.7 35 161-195 33-67 (78)
73 1hjb_A Ccaat/enhancer binding 68.5 12 0.00042 26.2 5.7 35 161-195 33-67 (87)
74 3idu_A Uncharacterized protein 68.3 18 0.00062 27.0 7.0 68 21-97 32-100 (127)
75 1nkp_B MAX protein, MYC proto- 67.8 5.8 0.0002 27.2 3.8 29 161-189 51-79 (83)
76 3mq7_A Bone marrow stromal ant 66.5 10 0.00036 28.0 5.1 31 165-195 72-102 (121)
77 3s9g_A Protein hexim1; cyclin 66.3 11 0.00037 27.1 4.9 28 165-192 66-93 (104)
78 3v86_A De novo design helix; c 66.2 11 0.00036 20.0 3.7 23 168-190 4-26 (27)
79 2wuj_A Septum site-determining 65.9 5.4 0.00019 25.6 3.1 29 159-187 29-57 (57)
80 1a93_A Coiled coil, LZ, MYC pr 65.7 12 0.00041 21.6 4.2 27 164-190 7-33 (34)
81 1dip_A Delta-sleep-inducing pe 65.0 11 0.00037 25.6 4.5 28 168-195 19-46 (78)
82 1dh3_A Transcription factor CR 62.9 6.4 0.00022 25.1 3.0 28 160-187 25-52 (55)
83 2dgc_A Protein (GCN4); basic d 62.5 9.2 0.00031 25.1 3.8 27 161-187 34-60 (63)
84 1gd2_E Transcription factor PA 62.3 7.7 0.00026 26.1 3.5 30 164-193 29-58 (70)
85 3m9b_A Proteasome-associated A 62.2 6.4 0.00022 33.1 3.7 29 164-192 68-96 (251)
86 2huh_A Putative DNA mismatch r 61.9 25 0.00085 27.1 6.7 67 24-97 28-94 (147)
87 3hd7_B Syntaxin-1A; membrane p 61.8 28 0.00096 25.1 6.8 9 212-220 99-107 (109)
88 1wlq_A Geminin; coiled-coil; 2 60.5 19 0.00064 25.0 5.2 34 161-194 35-68 (83)
89 2jee_A YIIU; FTSZ, septum, coi 60.2 21 0.00071 24.7 5.4 15 175-189 52-66 (81)
90 2zxx_A Geminin; coiled-coil, c 60.2 15 0.0005 25.4 4.6 29 163-191 40-68 (79)
91 3kin_B Kinesin heavy chain; mo 60.1 14 0.00047 27.2 4.9 31 161-191 86-116 (117)
92 3ra3_A P1C; coiled coil domain 60.0 6.6 0.00023 21.0 2.2 24 168-191 4-27 (28)
93 3q4f_C DNA repair protein XRCC 58.6 11 0.00038 30.1 4.3 27 160-186 157-183 (186)
94 3zy7_A AP-1 complex subunit ga 58.3 16 0.00054 27.0 5.0 81 23-108 30-121 (122)
95 3m91_A Proteasome-associated A 58.3 27 0.00092 21.9 5.3 24 167-190 26-49 (51)
96 2wt7_B Transcription factor MA 56.6 23 0.00079 25.0 5.2 31 164-194 48-78 (90)
97 2wvr_A Geminin; DNA replicatio 55.9 23 0.0008 28.7 5.8 33 161-193 112-144 (209)
98 1uii_A Geminin; human, DNA rep 54.1 31 0.0011 23.9 5.5 18 175-192 50-67 (83)
99 2xdj_A Uncharacterized protein 53.2 33 0.0011 23.7 5.6 33 161-193 24-56 (83)
100 2z5i_A TM, general control pro 52.8 30 0.001 21.7 4.9 29 161-189 16-44 (52)
101 2w6a_A ARF GTPase-activating p 52.0 35 0.0012 22.1 5.1 20 173-192 29-48 (63)
102 2l5g_A GPS2 protein, G protein 51.9 27 0.00091 20.5 4.1 7 178-184 22-28 (38)
103 4emc_A Monopolin complex subun 50.9 32 0.0011 27.6 5.8 35 160-194 23-57 (190)
104 1dip_A Delta-sleep-inducing pe 49.7 17 0.00059 24.7 3.5 30 157-186 15-44 (78)
105 2xzz_A Protein-glutamine gamma 49.3 68 0.0023 22.8 7.7 52 20-75 18-75 (102)
106 1scf_A Stem cell factor; steel 47.5 3.9 0.00013 34.3 0.0 21 202-222 213-233 (273)
107 3e38_A Two-domain protein cont 46.7 28 0.00097 30.3 5.4 65 26-97 270-334 (343)
108 3twe_A Alpha4H; unknown functi 46.7 31 0.0011 18.2 3.5 17 177-193 7-23 (27)
109 3hn9_A Lamin-B1; structural ge 46.7 36 0.0012 25.1 5.3 42 26-68 25-72 (123)
110 3s4r_A Vimentin; alpha-helix, 46.3 49 0.0017 23.2 5.7 32 161-192 60-91 (93)
111 1gyu_A Adapter-related protein 46.2 33 0.0011 25.9 5.1 67 23-94 48-121 (140)
112 4ani_A Protein GRPE; chaperone 46.0 36 0.0012 27.7 5.6 38 159-196 61-98 (213)
113 3nmd_A CGMP dependent protein 45.2 25 0.00086 23.8 3.7 23 168-190 44-66 (72)
114 1iu1_A Gamma1-adaptin; coated 45.1 44 0.0015 25.3 5.7 67 24-95 55-128 (146)
115 1kd8_A GABH AIV, GCN4 acid bas 44.7 44 0.0015 19.3 4.6 28 161-188 5-32 (36)
116 1wlq_A Geminin; coiled-coil; 2 44.7 45 0.0015 23.1 5.0 17 176-192 43-59 (83)
117 2eqb_B RAB guanine nucleotide 44.1 63 0.0021 23.0 5.9 35 157-191 5-39 (97)
118 1jcd_A Major outer membrane li 44.0 49 0.0017 20.8 4.8 21 165-185 19-39 (52)
119 2zvf_A Alanyl-tRNA synthetase; 43.8 33 0.0011 26.2 4.9 31 161-191 29-59 (171)
120 3ra3_B P2F; coiled coil domain 43.7 28 0.00095 18.5 3.0 18 175-192 4-21 (28)
121 3hd7_A Vesicle-associated memb 42.5 41 0.0014 23.4 4.8 11 176-186 38-48 (91)
122 3he5_A Synzip1; heterodimeric 42.1 54 0.0019 19.6 5.1 19 167-185 6-24 (49)
123 3s9g_A Protein hexim1; cyclin 41.6 64 0.0022 23.1 5.6 33 162-194 42-81 (104)
124 3mq7_A Bone marrow stromal ant 41.4 66 0.0023 23.7 5.8 36 159-194 73-108 (121)
125 2w6a_A ARF GTPase-activating p 41.4 65 0.0022 20.9 5.1 30 163-192 26-55 (63)
126 2v66_B Nuclear distribution pr 40.5 63 0.0022 23.6 5.6 28 161-188 32-59 (111)
127 2wvr_A Geminin; DNA replicatio 40.1 53 0.0018 26.6 5.6 28 161-188 119-146 (209)
128 3mud_A DNA repair protein XRCC 40.0 45 0.0016 26.4 5.1 28 161-188 139-166 (175)
129 1bb1_B Designed, thermostable 39.6 50 0.0017 18.5 4.6 28 165-192 3-30 (36)
130 4etp_A Kinesin-like protein KA 38.8 45 0.0015 29.6 5.6 28 161-188 7-34 (403)
131 1ifr_A Lamin A/C; immunoglobul 38.7 47 0.0016 24.5 4.8 43 26-68 19-67 (121)
132 1hlo_A Protein (transcription 38.1 54 0.0018 22.0 4.7 29 165-193 51-79 (80)
133 3vta_A Cucumisin; subtilisin-l 37.7 1.4E+02 0.0046 27.9 9.0 50 24-73 539-591 (621)
134 2w83_C C-JUN-amino-terminal ki 37.4 90 0.0031 21.2 5.6 33 161-193 34-66 (77)
135 3trt_A Vimentin; cytoskeleton, 37.3 58 0.002 21.5 4.8 24 168-191 53-76 (77)
136 2ls4_A High affinity copper up 43.4 7.1 0.00024 21.2 0.0 16 207-222 5-20 (26)
137 4emc_A Monopolin complex subun 37.0 37 0.0013 27.2 4.2 32 164-195 20-51 (190)
138 3w03_C DNA repair protein XRCC 37.0 56 0.0019 26.0 5.2 33 163-195 144-176 (184)
139 2aze_B Transcription factor E2 36.8 64 0.0022 23.2 5.2 34 159-192 8-41 (106)
140 1zxa_A CGMP-dependent protein 35.7 50 0.0017 21.9 4.0 30 165-194 26-55 (67)
141 2ks1_B Epidermal growth factor 35.6 25 0.00085 21.4 2.3 17 207-223 21-37 (44)
142 3jt0_A Lamin-B1; structural ge 35.5 66 0.0022 24.5 5.3 43 26-68 38-85 (144)
143 3u06_A Protein claret segregat 34.9 62 0.0021 28.9 5.8 29 161-189 7-35 (412)
144 1gmj_A ATPase inhibitor; coile 34.6 1E+02 0.0036 21.3 5.7 26 169-194 49-74 (84)
145 2jwa_A Receptor tyrosine-prote 34.6 20 0.00067 21.9 1.7 16 207-222 21-36 (44)
146 1wm3_A Ubiquitin-like protein 33.7 36 0.0012 22.2 3.1 21 27-47 3-23 (72)
147 1yhn_B RILP, RAB interacting l 33.1 1E+02 0.0035 20.1 6.3 37 167-203 6-43 (65)
148 3isy_A Bsupi, intracellular pr 32.7 1E+02 0.0034 22.7 5.8 24 21-44 17-40 (120)
149 2lll_A Lamin-B2; immunoglobuli 32.2 58 0.002 24.6 4.5 44 25-68 33-82 (139)
150 1l8d_A DNA double-strand break 32.0 1E+02 0.0036 21.6 5.7 33 161-193 68-100 (112)
151 3viq_B Mating-type switching p 31.8 47 0.0016 23.1 3.5 22 162-183 6-27 (85)
152 4e61_A Protein BIM1; EB1-like 31.6 1E+02 0.0035 22.3 5.4 28 161-188 15-42 (106)
153 1rtm_1 Mannose-binding protein 31.4 52 0.0018 24.1 4.1 26 169-194 2-27 (149)
154 3viq_A SWI5-dependent recombin 31.4 66 0.0023 23.8 4.6 27 168-194 4-30 (122)
155 3viq_B Mating-type switching p 31.4 67 0.0023 22.3 4.3 28 167-194 4-31 (85)
156 2oa5_A Hypothetical protein BQ 30.8 30 0.001 25.3 2.5 21 167-187 11-31 (110)
157 4dzo_A Mitotic spindle assembl 30.4 1.1E+02 0.0037 22.6 5.6 22 164-185 4-25 (123)
158 2l2t_A Receptor tyrosine-prote 29.8 35 0.0012 20.7 2.3 16 208-223 21-36 (44)
159 1p9i_A Cortexillin I/GCN4 hybr 29.7 72 0.0024 17.3 3.9 23 169-191 4-26 (31)
160 1am9_A Srebp-1A, protein (ster 29.7 1.1E+02 0.0038 20.6 5.2 32 165-196 44-75 (82)
161 3hd7_B Syntaxin-1A; membrane p 29.4 1.5E+02 0.0052 21.0 7.2 20 204-223 87-106 (109)
162 3efg_A Protein SLYX homolog; x 29.2 96 0.0033 21.0 4.8 31 165-195 29-59 (78)
163 2io0_B Small ubiquitin-related 29.2 51 0.0017 22.8 3.4 23 25-47 5-27 (91)
164 3iv1_A Tumor susceptibility ge 28.6 1.2E+02 0.004 20.7 5.0 20 166-185 48-67 (78)
165 4gio_A Putative lipoprotein; u 28.5 1.1E+02 0.0038 21.9 5.3 50 20-69 34-89 (107)
166 3vmx_A Voltage-gated hydrogen 28.5 1.1E+02 0.0037 18.9 5.6 28 168-195 15-42 (48)
167 2e9g_A AP-1 complex subunit ga 28.5 33 0.0011 25.5 2.5 42 23-64 39-84 (131)
168 2eqb_B RAB guanine nucleotide 28.3 1E+02 0.0035 21.9 4.9 33 157-189 62-94 (97)
169 2ve7_C Kinetochore protein NUF 28.3 24 0.00083 29.4 1.8 34 161-194 145-178 (250)
170 3swk_A Vimentin; cytoskeleton, 28.2 1.4E+02 0.0049 20.4 5.7 32 161-192 4-35 (86)
171 3u1c_A Tropomyosin alpha-1 cha 28.1 1.4E+02 0.0048 21.0 5.7 31 162-192 35-65 (101)
172 3q8t_A Beclin-1; autophagy, AT 27.6 1.4E+02 0.0047 20.9 5.6 28 163-190 24-51 (96)
173 1jcd_A Major outer membrane li 27.4 1.2E+02 0.004 19.0 5.6 29 160-188 7-35 (52)
174 3zwh_Q Myosin-9; Ca-binding pr 27.4 24 0.00081 21.6 1.2 28 168-195 3-30 (45)
175 2ve7_A Kinetochore protein HEC 27.3 95 0.0032 26.5 5.5 22 172-193 186-207 (315)
176 4ath_A MITF, microphthalmia-as 27.0 75 0.0026 22.0 3.9 24 160-183 35-58 (83)
177 2wg5_A General control protein 26.7 59 0.002 23.3 3.5 25 161-185 11-35 (109)
178 3ndz_E Endoglucanase D; cellot 25.9 1.8E+02 0.0061 20.7 6.3 49 24-72 17-86 (107)
179 2oqq_A Transcription factor HY 25.4 1.1E+02 0.0039 18.2 5.7 21 165-185 18-38 (42)
180 1p4u_A ADP-ribosylation factor 25.3 1.2E+02 0.004 23.2 5.2 37 27-63 58-98 (153)
181 1ic2_A Tropomyosin alpha chain 25.2 1.6E+02 0.0054 19.7 5.7 32 161-192 31-62 (81)
182 1t6f_A Geminin; coiled-coil, c 25.0 1.1E+02 0.0037 17.7 5.3 29 163-191 6-34 (37)
183 2zxx_A Geminin; coiled-coil, c 24.9 1.3E+02 0.0043 20.6 4.7 27 162-188 32-58 (79)
184 3oja_A Leucine-rich immune mol 24.7 1.1E+02 0.0038 27.1 5.7 27 165-191 436-462 (487)
185 3sja_C Golgi to ER traffic pro 24.7 1.5E+02 0.0052 19.4 4.9 19 176-194 37-55 (65)
186 3mtu_E Head morphogenesis prot 24.7 1.4E+02 0.0047 20.3 4.8 28 162-189 42-69 (77)
187 2aze_A Transcription factor DP 24.6 1.3E+02 0.0044 23.2 5.2 25 164-188 5-29 (155)
188 1ufg_A Lamin A, nuclear lamin; 24.5 1.1E+02 0.0039 23.3 5.0 43 26-68 50-98 (151)
189 2j5u_A MREC protein; bacterial 24.3 55 0.0019 27.1 3.3 16 180-195 45-60 (255)
190 1vf5_F Protein PET M; photosyn 24.2 72 0.0025 18.4 2.8 15 208-222 13-27 (35)
191 3i6s_A Subtilisin-like proteas 24.1 2.9E+02 0.01 25.9 8.7 50 24-73 560-612 (649)
192 3m9b_A Proteasome-associated A 24.0 74 0.0025 26.6 4.0 35 161-195 58-92 (251)
193 3mud_A DNA repair protein XRCC 24.0 1.6E+02 0.0055 23.1 5.8 35 160-194 131-165 (175)
194 1wt6_A Myotonin-protein kinase 24.0 1.8E+02 0.0061 19.9 5.6 17 176-192 50-66 (81)
195 1use_A VAsp, vasodilator-stimu 23.8 1.3E+02 0.0044 18.3 4.1 23 171-193 15-38 (45)
196 3a7o_A Autophagy protein 16; c 23.3 95 0.0033 20.8 3.7 27 162-188 16-42 (75)
197 4dzo_A Mitotic spindle assembl 23.3 80 0.0027 23.3 3.7 22 171-192 4-25 (123)
198 2d07_B Ubiquitin-like protein 23.2 75 0.0026 21.8 3.4 24 24-47 16-39 (93)
199 3ol1_A Vimentin; structural ge 23.0 1.9E+02 0.0064 20.9 5.7 31 161-191 24-54 (119)
200 1buu_A Protein (mannose-bindin 22.8 89 0.003 23.4 4.1 23 171-193 23-45 (168)
201 4h22_A Leucine-rich repeat fli 22.7 1.8E+02 0.0062 20.8 5.3 30 159-188 11-40 (103)
202 1g6u_A Domain swapped dimer; d 22.6 1.3E+02 0.0044 17.8 4.0 23 171-193 20-42 (48)
203 2iaa_C Azurin; quinoprotein, t 22.5 1.2E+02 0.0041 22.2 4.7 16 56-71 83-98 (128)
204 1klf_A FIMC chaperone, chapero 22.5 1.4E+02 0.0047 23.8 5.3 39 27-69 139-177 (205)
205 1ik9_A DNA repair protein XRCC 22.4 1.3E+02 0.0046 24.2 5.3 30 162-191 137-166 (213)
206 1s1c_X RHO-associated, coiled- 22.4 1.8E+02 0.0061 19.4 5.3 25 165-189 7-31 (71)
207 2jn6_A Protein CGL2762, transp 22.4 4.8 0.00016 27.9 -3.2 26 169-194 64-89 (97)
208 4ath_A MITF, microphthalmia-as 22.3 1.3E+02 0.0045 20.7 4.4 30 165-194 33-62 (83)
209 3kyd_D Small ubiquitin-related 22.2 78 0.0027 23.1 3.4 24 24-47 39-62 (115)
210 2io1_B Small ubiquitin-related 22.2 98 0.0033 21.4 3.9 23 25-47 7-29 (94)
211 3ghg_A Fibrinogen alpha chain; 22.1 1.3E+02 0.0044 27.9 5.5 35 161-195 114-148 (562)
212 3tnu_B Keratin, type II cytosk 21.8 1.8E+02 0.0062 21.1 5.6 33 159-191 38-70 (129)
213 3i00_A HIP-I, huntingtin-inter 21.7 1.5E+02 0.0051 21.8 4.9 16 178-193 68-83 (120)
214 3l4f_A RHO guanine nucleotide 21.7 1.7E+02 0.0059 18.9 5.4 25 164-188 7-31 (61)
215 1l8d_A DNA double-strand break 21.3 2.1E+02 0.0073 19.9 5.7 29 162-190 15-43 (112)
216 1iij_A ERBB-2 receptor protein 21.2 14 0.00048 21.5 -0.7 15 208-222 18-32 (35)
217 2j5u_A MREC protein; bacterial 21.1 29 0.00098 28.9 0.9 29 161-189 30-61 (255)
218 4e61_A Protein BIM1; EB1-like 21.1 1.8E+02 0.0061 21.0 5.1 32 162-193 9-40 (106)
219 3azd_A Short alpha-tropomyosin 21.0 33 0.0011 19.9 1.0 23 162-184 9-31 (37)
220 2ve7_A Kinetochore protein HEC 20.8 1E+02 0.0035 26.3 4.4 29 165-193 186-214 (315)
221 1q90_M Cytochrome B6F complex 20.7 91 0.0031 18.4 2.8 15 208-222 14-28 (39)
222 1xo8_A AT1G01470; structural g 20.6 2.2E+02 0.0074 21.4 5.9 50 23-72 40-95 (151)
223 3a2a_A Voltage-gated hydrogen 20.6 1.7E+02 0.0059 18.5 5.5 30 167-196 21-50 (58)
224 3tnu_A Keratin, type I cytoske 20.6 2E+02 0.0069 21.0 5.6 33 159-191 40-72 (131)
225 1gk6_A Vimentin; intermediate 20.5 1.7E+02 0.0058 18.4 5.1 25 162-186 5-29 (59)
226 2zqm_A Prefoldin beta subunit 20.4 2.2E+02 0.0075 19.8 5.6 31 163-193 76-106 (117)
227 1joc_A EEA1, early endosomal a 20.1 2.2E+02 0.0075 20.7 5.7 28 162-189 9-36 (125)
228 3q4f_C DNA repair protein XRCC 20.1 1.8E+02 0.006 23.1 5.2 31 163-193 153-183 (186)
229 3ol1_A Vimentin; structural ge 20.1 2E+02 0.0067 20.8 5.3 32 163-194 19-50 (119)
230 2ccw_A Azurin II, AZN-2; elect 20.1 1.3E+02 0.0043 22.1 4.3 16 56-71 84-99 (129)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=1.6e-38 Score=254.80 Aligned_cols=134 Identities=28% Similarity=0.457 Sum_probs=121.3
Q ss_pred CCCceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCC
Q 027355 3 TGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (224)
Q Consensus 3 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~ 81 (224)
++++|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 8999999999999999999999999999999999999999999999999999999999999753 2
Q ss_pred CCCCeEEEEEEecC--CCCCcccCCCCcccccCCCeeeEEEeEEEEe-cCCCCCCCCCCCCCC
Q 027355 82 QCKDKFLLLSVVAP--DGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PANPPSPVPEGSEEG 141 (224)
Q Consensus 82 ~~kdKFlVqs~~~~--~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~-p~~~~s~v~e~~~e~ 141 (224)
.++|||+||++.++ ++.+..|+ .++|++..+..++++||||+|+ |++|+|++.+|.++|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~ 152 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG 152 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence 68999999999999 55556677 5899998888899999999999 888888888877654
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=9.9e-37 Score=243.06 Aligned_cols=123 Identities=33% Similarity=0.605 Sum_probs=111.9
Q ss_pred CCceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCC
Q 027355 4 GDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQ 82 (224)
Q Consensus 4 ~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~ 82 (224)
+++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|||||++|+|.||++++|.|+++++. .+++++
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~p~~~ 90 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YDPNEK 90 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CCTTCC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CCcccc
Confidence 479999997 899999999999999999999999999999999999999999999999999999999999985 345578
Q ss_pred CCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEe-cCCC
Q 027355 83 CKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PANP 130 (224)
Q Consensus 83 ~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~-p~~~ 130 (224)
|+|||+||++.++++.+ |+ .++|++..+..++++||||+|+ |++.
T Consensus 91 ~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp SCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred CCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 99999999999998643 56 6899988888899999999999 6653
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=2.8e-36 Score=235.12 Aligned_cols=122 Identities=32% Similarity=0.600 Sum_probs=110.6
Q ss_pred CC-CCCceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCC
Q 027355 1 MS-TGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (224)
Q Consensus 1 m~-~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p 78 (224)
|+ .+++|.|+|. +|.|.+++++.+++.|+|+|+|+++||||||||+|++|+|||++|+|+||++++|.|+++++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 44 3479999996 8999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEe
Q 027355 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (224)
Q Consensus 79 ~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (224)
++++|+|||+||++.++++.+ |+ .++|++.++..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 456899999999999998653 66 6899998888999999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=2.2e-33 Score=218.33 Aligned_cols=118 Identities=25% Similarity=0.430 Sum_probs=104.9
Q ss_pred CceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCC
Q 027355 5 DLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQC 83 (224)
Q Consensus 5 ~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~ 83 (224)
..|.++|. +|.|++|+++.++|.|+|+|+|+++||||||||+|++|||||++|+|+||+++.|.|+||++.+.|++. .
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~-~ 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDL-N 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSCC-S
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCcc-C
Confidence 57999997 899999999999999999999999999999999999999999999999999999999999988666553 5
Q ss_pred CCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEe
Q 027355 84 KDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (224)
Q Consensus 84 kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (224)
+|||+|||+.++++.+ +|+..+||. .+ ..+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf~-~d-~~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWFQ-GD-GMVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHHH-SS-SCCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhhc-CC-CceEEEEEEEEec
Confidence 9999999999998763 678555553 33 3589999999995
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=2e-29 Score=191.15 Aligned_cols=103 Identities=23% Similarity=0.335 Sum_probs=89.0
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCCe
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDK 86 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdK 86 (224)
|.|+|.+|.|+++. ..+.|+|+|+|+++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 79999999999873 479999999999999999999999999999999999999999999999985 2 37999
Q ss_pred EEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEE
Q 027355 87 FLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRV 123 (224)
Q Consensus 87 FlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v 123 (224)
|+||++.++++. .|. .++|++..+ .++.+|++
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l 105 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPM 105 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEE
Confidence 999999998764 355 789988654 34555554
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=1e-28 Score=188.71 Aligned_cols=106 Identities=23% Similarity=0.412 Sum_probs=92.6
Q ss_pred CceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCC
Q 027355 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCK 84 (224)
Q Consensus 5 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~k 84 (224)
.++.++|.+|.|+++ ..++.|+|+|+|+.+||||||||+|++|||||+.|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 578999999999876 3599999999999999999999999999999999999999999999999986 2 369
Q ss_pred CeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEE
Q 027355 85 DKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124 (224)
Q Consensus 85 dKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~ 124 (224)
|||+||++.++++.. |. +++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999987533 55 789998654 567777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=6.3e-07 Score=68.02 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCeeeecc-cCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCCeEEE
Q 027355 11 PSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLL 89 (224)
Q Consensus 11 P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdKFlV 89 (224)
|+.|.|.. +.+...+..+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|... ......+.+
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~----g~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSV----GDHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSS----BCCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCC----ccEEEEEEE
Confidence 66788854 567888999999999999999999975 46999999999999999999999998631 124455555
Q ss_pred EE
Q 027355 90 LS 91 (224)
Q Consensus 90 qs 91 (224)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=2.9e-06 Score=62.80 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=60.4
Q ss_pred CCceEEeCCeeeec-ccCCCceeEEEEEEcCCCCeEEEEEeecCC---CcEEEeCCceeeCCCCeEEEEEEecCC
Q 027355 4 GDLVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAFKVKTTNP---KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 4 ~~lL~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p---~~Y~VrP~~Gii~P~~s~~I~Vtlq~~ 74 (224)
+..+.+++..|.|- ...+...+..++|+|+++.++.|++..... ..|.+.|+.|.|.||++..|.|++.|.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 35788999889983 356778899999999999999999964221 569999999999999999999999884
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.15 E-value=1.8e-05 Score=61.70 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCceEEeCCeeeec-ccCCCceeEEEEEEcCCCCeEEEEEeec------CCCcEEEeCCceeeCCCCeEEEEEEecC
Q 027355 4 GDLVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAFKVKTT------NPKKYCVRPNTGIILPRTSCAVTVTMQA 73 (224)
Q Consensus 4 ~~lL~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~ 73 (224)
.+-+.+++.+|.|- -.++...++.|+|+|++.-+..|++.-. .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 35688899899995 3567889999999999999999998853 3456889999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.65 E-value=0.00026 Score=63.36 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=59.7
Q ss_pred CceEEeCCeeeec-ccCCCceeEEEEEEcCCCCeEEEEEeecCC------CcEEEeCCceeeCCCCeEEEEEEecCC
Q 027355 5 DLVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAFKVKTTNP------KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 5 ~lL~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p------~~Y~VrP~~Gii~P~~s~~I~Vtlq~~ 74 (224)
+.+.|++.++.|. -.+....+..|+|+|++.-++.|++..... .-+.|.|..|.|.||+++.|.|++...
T Consensus 28 P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 28 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 5788999999994 467889999999999999999999986422 226799999999999999999998654
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.90 E-value=0.0041 Score=51.40 Aligned_cols=69 Identities=10% Similarity=0.202 Sum_probs=59.1
Q ss_pred ceEEeCCeeeecc-cCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCc
Q 027355 6 LVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (224)
Q Consensus 6 lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~ 75 (224)
-|+++|..+.|.- +.+......+.++|.++.++-++.-.. |..+..++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 3889999999953 456677789999999999999987644 88889999999999999999999998653
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.51 E-value=0.013 Score=48.44 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=57.1
Q ss_pred CceEEeCCeeeec-ccCCCceeEEEEEEcCCCCeEEE-EEeecCCCcEEEeCCceeeCCCCeEEEEEEecCC
Q 027355 5 DLVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAF-KVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (224)
Q Consensus 5 ~lL~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaF-KVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~ 74 (224)
..+.++ ..+.|- .+ +...++.++|+|.++.++.+ +|+|+. +...+.++.+.|.||++..|.|++.+.
T Consensus 118 ~~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CEEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 357777 778883 45 77889999999999999887 888765 799999999999999999999999874
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=95.03 E-value=0.43 Score=40.37 Aligned_cols=109 Identities=14% Similarity=0.250 Sum_probs=71.8
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCC----------CcEEEeCCceeeCCCCeEEEEEEecCCcc
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKE 76 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~ 76 (224)
|.|.|..+.|+.. .....|+|+|.++.++.-.+...+- .-|.|.|+.--|+||+...|.|...+. .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5677777888753 3468999999998887766654331 239999999999999999999987764 3
Q ss_pred CCCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 77 APPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 77 ~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
+|.|.. .-|-+..-.+|+... + ....-......++++-|.|..
T Consensus 106 LP~DrE--Slf~lnv~eIPp~~~--~------~~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 106 LPTDRE--SLFWLNILEVPPRDE--D------ENNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp CCSSSC--EEEEEEEEEECCC-----------------CCEEEEEEEEEECTT
T ss_pred CCCCce--eEEEEEeeecCCCCC--C------CCceEEEEEEEEEEEEEeccc
Confidence 666633 345555555555311 1 011112346778888888764
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=92.90 E-value=1.1 Score=36.85 Aligned_cols=116 Identities=9% Similarity=0.145 Sum_probs=73.6
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-----CCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~ 81 (224)
|.|.+..+.|+.. .....|+|+|.++.++.--+..-. ..-|.|.|+.--|+||+...|.|...+. .+|.|.
T Consensus 14 v~i~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAG---TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETT---SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCC---CCEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 6778888998753 346899999999888766655432 1359999999999999999999998763 467663
Q ss_pred CCCCeEEEEEEecCCCCCccc-CCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 82 QCKDKFLLLSVVAPDGATAKD-IGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 82 ~~kdKFlVqs~~~~~~~~~~d-~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
. .-|-+..-.+|+.....+ -...- ...-......++++-|.|..-
T Consensus 90 E--slf~lnv~eIPp~~~~~~~~~~n~--~~~lqia~r~rIKlFyRP~~l 135 (221)
T 2co7_B 90 E--TLQWVCIKAVPPENEPSDTQAKGA--TLDLNLSINACDKLIFRPDAV 135 (221)
T ss_dssp C--EEEEEEEEEECCC-------------CEEEEEEEEEEEEEEEECTTS
T ss_pred e--EEEEEEeecCCCCcccccccccCc--ceeEEEEeeeeeeEEEecccc
Confidence 3 345555555554211000 00000 000123456788888887753
No 15
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=92.88 E-value=2.8 Score=34.44 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=68.6
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-------CCcEEEeCCceeeCCCCeEEEEEEecCCccCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~ 79 (224)
|.|.-..+.|+.. .....|+|+|.++.++.-...... ..-|.|.|+.--|+||+...|.|...+. .+|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5566667888753 346889999999888766654421 1249999999999999999999998764 3676
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
|. ..-|-+....+|+... +- ... -......+|++-|.|..
T Consensus 90 DR--ESlf~lnv~eIPp~~~--~~----~n~--lqia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 90 DK--ESLKWLCVKGIPPKDE--DI----WVD--VQFAINNCIKLLVRPNE 129 (218)
T ss_dssp SS--CEEEEEEEEEECC----------------------CEEEEEEECTT
T ss_pred Cc--EEEEEEEEEecCCCCc--cc----cce--eEEEEEEEEEEEEcCcc
Confidence 62 2346666666665211 10 111 12345568888888764
No 16
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=92.32 E-value=1.8 Score=35.50 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=74.6
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecC-------CCcEEEeCCceeeCCCCeEEEEEEecCC-ccC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQ-KEA 77 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-------p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~-~~~ 77 (224)
|.+++..+.|+.. .....|+|+|.++. ++.-.+.... ..-|.|.|+.--|+||+...|.|...+. ..+
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 5677778888754 35789999999987 7766655432 2349999999999999999999998762 236
Q ss_pred CCCCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
|.|. ..-|-+..-.+|+... + ...-......++++-|.|..-
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~--~-------~n~lqia~r~rIKlFyRP~~l 120 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSE--K-------ANVLQIALQTKIKLFYRPAAI 120 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCC--C-------TTEEEEEEEEEEEEEEECGGG
T ss_pred CCCc--eEEEEEEeecCCCCCC--C-------CceEEEEehheeeEEEcCccc
Confidence 7763 3445555555554211 1 011123567788888887653
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=91.70 E-value=1.6 Score=36.52 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=60.1
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-----CCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~ 81 (224)
|.|.+..+.|+.. .....|+|+|.++.++.-.+.... ..-|.|.|+.--|+||+...|.|..... .+|.|.
T Consensus 24 v~l~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPA---SSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTT---SSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 6678888888753 346899999999887665544321 2349999999999999999999988754 367663
Q ss_pred CCCCeEEEEEEecCC
Q 027355 82 QCKDKFLLLSVVAPD 96 (224)
Q Consensus 82 ~~kdKFlVqs~~~~~ 96 (224)
. .-|-+....+|+
T Consensus 100 E--Slf~lnv~eIPp 112 (239)
T 4djm_A 100 E--SLQWICVKGIPP 112 (239)
T ss_dssp C--EEEEEEEEEECC
T ss_pred e--EEEEEEEEecCC
Confidence 2 445555555554
No 18
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=91.62 E-value=4.6 Score=32.69 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=73.8
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecC-----CCcEEEeCCceeeCCCCeEEEEEEe-cCCccCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTM-QAQKEAPP 79 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-----p~~Y~VrP~~Gii~P~~s~~I~Vtl-q~~~~~p~ 79 (224)
|.+++..+.|+.. .....|+|+|.++. ++.-.+.... ..-|.|.|+.--|+||+...|.|.. .+. .+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 5677778888753 35789999999987 7666554422 2359999999999999999999998 653 4676
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
|.. .-|-+....+|+.....+ ....-......++++-|.|..-
T Consensus 78 DrE--slf~lnv~eIPp~~~~~~------~~n~lqia~r~riKlFyRP~~l 120 (205)
T 1klf_A 78 DRE--SLFWMNVKAIPSMDKSKL------TENTLQLAIISRIKLYYRPAKL 120 (205)
T ss_dssp SSC--EEEEEEEEEECCCCTTST------TSCEEEEEEEEEEEEEEECTTC
T ss_pred Cce--EEEEEEeEecCCCCcccc------CCceEEEEeeeeeeEEEccccc
Confidence 633 355555555554211000 0001123457788888887754
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=91.35 E-value=5 Score=32.51 Aligned_cols=112 Identities=14% Similarity=0.222 Sum_probs=72.0
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCC-CeEEEEEeecC-----CCcEEEeCCceeeCCCCeEEEEEE-ecCCccCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVT-MQAQKEAPP 79 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~-----p~~Y~VrP~~Gii~P~~s~~I~Vt-lq~~~~~p~ 79 (224)
|.+++..+.|+.. .....|+|+|.++ .++.-.+.... ..-|.|.|+.--|+||+...|.|. ... ..+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677778888753 3578999999986 77766654432 235999999999999999999998 654 34677
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (224)
|.. .-|-+..-.+|+.....+ + ...-......++++-|.|..-
T Consensus 78 DrE--slf~lnv~eIPp~~~~~~---~---~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 78 DRE--SLFWVNVKAIPAMDKAKT---G---ENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp SSC--EEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTTC
T ss_pred Cce--EEEEEEeecCCCCccccc---C---CceEEEEhhheeeEEEecccc
Confidence 633 344444444443211000 0 011124567889998887754
No 20
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=88.39 E-value=0.61 Score=26.07 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
|++|+||...|..-.++||+.+++|....
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888899999998887653
No 21
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=88.25 E-value=9.7 Score=31.34 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=68.1
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeec--C----CCcEEEeCCceeeCCCCeEEEEEEecCCccCCC
Q 027355 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTT--N----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (224)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~----p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~ 79 (224)
+.++...+.|+.. .....|+|+|.++. ++.-.+... . ..-|.|.|+.--|+||+...|.|..... .+|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 3455667888753 34689999999875 443333321 1 1249999999999999999999988754 3676
Q ss_pred CCCCCCeEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEecCC
Q 027355 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (224)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (224)
|.. .-|-+....+|+... . ..-......++++-|.|..
T Consensus 78 DRE--Slf~lnv~eIPp~~~-----~-----n~Lqiair~rIKLFyRP~~ 115 (224)
T 3gfu_C 78 DKE--SVYWLNLQDIPPALE-----G-----SGIAVALRTKLKLFYRPKA 115 (224)
T ss_dssp SSC--EEEEEEEEEECCCCS-----S-----SBCCEEEEEEEEEEEECGG
T ss_pred Cce--EEEEEEeecCCCCCC-----C-----CeEEEEEEEEeeEEEcccc
Confidence 632 445555555554211 0 1113456778888887654
No 22
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=88.23 E-value=1.2 Score=30.92 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.+|.+.|..|+++...+..++++|+.|...|++..
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999988888764
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.05 E-value=1.9 Score=29.83 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
+..|...|..|+++...+..+.+.|+++...|+.....
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999988888876543
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.78 E-value=1.9 Score=27.59 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
++..|+.|...|+.+++.|+++++.++++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777777777654
No 25
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=85.63 E-value=5.3 Score=35.40 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=48.9
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcE----------------------EEeCCceeeCCCC
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKY----------------------CVRPNTGIILPRT 63 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y----------------------~VrP~~Gii~P~~ 63 (224)
.+.++..+-.|.- .++..+-+++++|.++.+|-..==+|+.-+| .|.|+. =|.||+
T Consensus 249 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~-pI~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNS-PLAPGE 326 (382)
T ss_dssp SEEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCS-CBCTTC
T ss_pred ceEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCC-CcCCCc
Confidence 3444444556653 4788999999999999999888666666555 333433 389999
Q ss_pred eEEEEEEecCC
Q 027355 64 SCAVTVTMQAQ 74 (224)
Q Consensus 64 s~~I~Vtlq~~ 74 (224)
+.+|.|+.|.-
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999999864
No 26
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.41 E-value=1.6 Score=25.08 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|.+....|..+|..|++|..+||...
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4567777788888999999999888654
No 27
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=85.35 E-value=4.2 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=38.3
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEEe-CCceeeCCCCeEEEEEEecC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-PNTGIILPRTSCAVTVTMQA 73 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~Gii~P~~s~~I~Vtlq~ 73 (224)
-...|+|.|.+.+...|.++......+.+. |..=.|.||+...+.|.+..
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~ 83 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGA 83 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEE
Confidence 456999999999999999998775446553 55457889998887777653
No 28
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=83.94 E-value=2.9 Score=23.91 Aligned_cols=28 Identities=4% Similarity=0.033 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|++-...|..+|..|+.|..+||...
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4677777788899999999999988654
No 29
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.69 E-value=3.2 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+|..|..|+..+.+|...|+=|+..|+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655554
No 30
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=83.10 E-value=3.6 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+.|.+-...|..+|..|++|..+||....
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 46677777788888888888888886543
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.17 E-value=3.9 Score=26.52 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
...+..|..+...|..++..|++|+..|+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 32
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=81.84 E-value=3.9 Score=23.51 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|.+-...|..+|..|+.|..+||...
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5677777788889999999999888754
No 33
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.70 E-value=3.7 Score=23.68 Aligned_cols=28 Identities=11% Similarity=0.288 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|++....+..+|..|++|..+||...
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677778888899999999999998754
No 34
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=81.58 E-value=5 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+++.+.|.++..|+....+++..||..+..|...+
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37888999999999999999999998888877654
No 35
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.14 E-value=3.7 Score=28.96 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+....+..|+.|...|+.+++.|++|+..||....
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777776544
No 36
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=80.03 E-value=3.4 Score=26.45 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+.+..|+.+...|..||..|.+++..|+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888999998888888754
No 37
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=79.70 E-value=4 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
....+..|..|...|+.++..|++|+..||..
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666643
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.51 E-value=5.1 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.+..|+++...|..+|..|+.++..|+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666665555555543
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.83 E-value=5.7 Score=26.05 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+...+..|..+...|..+...|+.|+..|+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554444
No 40
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=78.81 E-value=4.4 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+.+|.+.|..|+.+...|.+++..|+.++...+
T Consensus 45 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 45 LRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457888889999888888888888888766543
No 41
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=78.27 E-value=8.1 Score=34.60 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=48.7
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEE---------------------eCCceeeCCCCe
Q 027355 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCV---------------------RPNTGIILPRTS 64 (224)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V---------------------rP~~Gii~P~~s 64 (224)
.+.++...-.|.- .++..+-+++++|.++.+|-..==+|+.-+|.= .|+ -|.||++
T Consensus 283 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET 359 (419)
T 3rfr_A 283 QVTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES 359 (419)
T ss_dssp CCEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred ceEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence 3445554556654 478899999999999999988866666555541 233 5999999
Q ss_pred EEEEEEecCC
Q 027355 65 CAVTVTMQAQ 74 (224)
Q Consensus 65 ~~I~Vtlq~~ 74 (224)
.+|.|+.|.-
T Consensus 360 rt~~V~a~da 369 (419)
T 3rfr_A 360 KEIVVKIQDA 369 (419)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEeehH
Confidence 9999999853
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.76 E-value=5.6 Score=27.66 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
++.|.+.|.-|+-|+..|+++|..|.++...
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777776665555
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=77.56 E-value=5.2 Score=26.18 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+++.+.+..|..+...|..+...|++|+..|+...
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888999999999999999999998888653
No 44
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=77.47 E-value=5.3 Score=22.99 Aligned_cols=28 Identities=11% Similarity=0.321 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|.+-...+..+|..|+.|..+||...
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4667777788899999999999998754
No 45
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=77.41 E-value=5 Score=26.40 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.+..|+.+...|..+|..|..|+..|+...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888889999999888888653
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=76.98 E-value=4.7 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
.+.+....+.+++.++.||..|++++-
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 345567778889999999999988754
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.71 E-value=6.1 Score=28.58 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.+.+|+.+++.|..|+.+|+++.+.|....
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666555555443
No 48
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=76.61 E-value=6.6 Score=22.88 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+.|.+-...|..++..|++|..+||....
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 56677777788888888888888886543
No 49
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=76.40 E-value=6.3 Score=27.61 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.+|...|..|+++...+..+.+.|+++-..|++..
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778888888777776666666666655555543
No 50
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=76.35 E-value=6.1 Score=23.00 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|.+....|..++..|++|..+||...
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4566777777777888888888777653
No 51
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=76.28 E-value=7 Score=27.26 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
++.++-.+|-+++..+.+|+..|+++.+.||..+
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777777777777543
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.44 E-value=4.3 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=27.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 156 NSSFDDAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 156 ~~~~~~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
..+++.++.+...|+.+...|.++++.|+.++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888889999999999999999888764
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.85 E-value=7.1 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.+..|+++...+..+|..|+.++..|+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999888763
No 54
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.62 E-value=3.3 Score=27.01 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.+..|+++...|..+|..|+.++..|+...
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666543
No 55
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.60 E-value=7.1 Score=27.67 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++..+...|..|+..|.+|+..+..|++.++.+
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666654
No 56
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=74.29 E-value=3.8 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.+.|+++++.+++|.+.|++|++.|+..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3678899999999999999999999864
No 57
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=74.02 E-value=9.5 Score=21.76 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|++-...+..++..|++|..+||...
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4566677777788888888888888653
No 58
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=73.90 E-value=5.6 Score=31.91 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++=+...+..|+++...+++||++|++|.....+
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888887765443
No 59
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.80 E-value=7.8 Score=25.16 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+++...+..|..+...|..++..|++|+..|+..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788999999999999999999998887754
No 60
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=73.77 E-value=5.1 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
.+.....++.++.+.++++|+.|++++..|+
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666667777888888888888888877765
No 61
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=73.54 E-value=7 Score=21.66 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+..|..|...+..||-+|.||...|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456777778888888888888877654
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.19 E-value=6 Score=26.69 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++.+.+..|+++...+..||..|++++..|+..
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666777776666666543
No 63
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.86 E-value=8.2 Score=25.27 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.+.+..|..+...|.++|..|+.++..|+...
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999999999888763
No 64
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.30 E-value=4.5 Score=27.64 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~ 185 (224)
..|...|..|+++...|.++++.|++
T Consensus 53 ~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 53 DKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677766665555555555544
No 65
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=71.88 E-value=5.8 Score=25.47 Aligned_cols=32 Identities=3% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+..+-+..+.++...+.+||..|++++..++.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567777888888888888888877654
No 66
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.74 E-value=4 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 158 SFDDAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 158 ~~~~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
.+..++.+|..|+.|++.|+++++.|.-+++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999988875
No 67
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=71.22 E-value=10 Score=21.76 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|.+-...|..+|..|++|..+||...
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4666777778888888888888888654
No 68
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=70.07 E-value=6.8 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLR 184 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~ 184 (224)
+-.+|...++|+.+|+++|..|+
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 33445555566666666666554
No 69
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=69.40 E-value=14 Score=21.27 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.|.+-...+..++..|++|+.+||...
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566666777888888888888888754
No 70
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=69.24 E-value=14 Score=23.58 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+...+=.|.+|.+.|+++|.+|++-++.
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678889999999999999776654
No 71
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=68.96 E-value=6.2 Score=27.15 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+.+...+|.+|...++.|++.|++++.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555443
No 72
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=68.81 E-value=13 Score=25.58 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+.......+......|.+||..|+.++..|++...
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567778888999999999999999998754
No 73
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.51 E-value=12 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
........+..+...|.+||..|+.+++.|++...
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888999999999999999998754
No 74
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=68.33 E-value=18 Score=26.95 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=50.2
Q ss_pred CCceeEEEEEEcCCCCe-EEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEecCCC
Q 027355 21 KKQSSCSMQLTNKTDKF-VAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~~-vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (224)
++.++..++++|..... =+|+|+-...+...-.-..+ |.||++.+|.++..+. ....+-|....-+++
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~--------~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPT--------QEGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCS--------SCEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcC--------CCcEEEEEEEEcCCC
Confidence 67899999999998654 58998877777665444444 9999999999988652 134566776666655
No 75
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=67.76 E-value=5.8 Score=27.24 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
.+...+..|.+|.+.+.++|..|++++..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666665543
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.53 E-value=10 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.+.+|+.|+..|.++.+....|+++||+...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 4677778887777777777778888887643
No 77
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.25 E-value=11 Score=27.14 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.|..|..|+..|+.||+.|.+|-++-|+
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555666666666666655555443
No 78
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=66.19 E-value=11 Score=20.01 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~l 190 (224)
.|.+|.-.+.-|.+.|+.|...|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 45566666666666676665543
No 79
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=65.90 E-value=5.4 Score=25.63 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el 187 (224)
+++....+..|.+|...|++++..|++++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677788899999999999999888764
No 80
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=65.75 E-value=12 Score=21.63 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
++-.+|--|...++..+++|.+.++.+
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344677777788888888887777654
No 81
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=65.04 E-value=11 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
-|++.+..|.+.|.+|+.|-..||....
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444555555666666666667776554
No 82
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.88 E-value=6.4 Score=25.12 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el 187 (224)
+++...+..|+.|...|..++..|++++
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666777777777777777776643
No 83
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.47 E-value=9.2 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el 187 (224)
++...+..|..|...|..++..|++++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777665
No 84
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.33 E-value=7.7 Score=26.12 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+.|..|+.....+...+..|..|...||..
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666654
No 85
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=62.20 E-value=6.4 Score=33.07 Aligned_cols=29 Identities=34% Similarity=0.298 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+...+|.++++.+++|+.+|++|++.|+.
T Consensus 68 arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 68 ARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455677888888888888888887775
No 86
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=61.93 E-value=25 Score=27.10 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=50.5
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEecCCC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (224)
..-..-|.|.|+..+.|-.-+..-+.+.++ ..|.|+|+.+..|.=.-.. +...--+|.||-+.--.+
T Consensus 28 t~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~------eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 28 TPFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKD------VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CCEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGG------GGGGCSSEEEEEEEECSS
T ss_pred cceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChh------HhcCCceEEEEEEEEcCC
Confidence 345788999999999999998888888777 7899999998887644322 122346788888877653
No 87
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=61.82 E-value=28 Score=25.06 Aligned_cols=9 Identities=11% Similarity=0.427 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 027355 212 LLGILVGYL 220 (224)
Q Consensus 212 ll~~~iG~~ 220 (224)
++++++|..
T Consensus 99 i~~~~~~~~ 107 (109)
T 3hd7_B 99 IIASTIGGI 107 (109)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhccc
Confidence 344455443
No 88
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=60.51 E-value=19 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
++.++-.+|.+++..+..|+..|++|...|+..+
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666665443
No 89
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.24 E-value=21 Score=24.73 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027355 175 SAMQQNQKLRQELEF 189 (224)
Q Consensus 175 ~~~~en~~L~~el~~ 189 (224)
.+.+||++|++|...
T Consensus 52 ~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 52 ELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666665543
No 90
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=60.22 E-value=15 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
-..|..+++|+..+++||..|++-.+..+
T Consensus 40 h~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 40 HKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444433
No 91
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=60.10 E-value=14 Score=27.21 Aligned_cols=31 Identities=23% Similarity=0.088 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+....+.+..++...|+++.+.|+.|+.+.|
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566677778888888899999999988776
No 92
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.95 E-value=6.6 Score=20.98 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr 191 (224)
.|+=|.+.+.+....|+|.+..|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555443
No 93
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=58.59 E-value=11 Score=30.06 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~e 186 (224)
+-+...+..|+++...|++||++|++|
T Consensus 157 ~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 157 CYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777665
No 94
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=58.30 E-value=16 Score=26.98 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=48.1
Q ss_pred ceeEEEEEEcCCCCeE-EEEEeecCCCcEEEe--CCce-eeCC--CCeEEEEEEe-cCCccCCCCCCCCCeEEEEEEecC
Q 027355 23 QSSCSMQLTNKTDKFV-AFKVKTTNPKKYCVR--PNTG-IILP--RTSCAVTVTM-QAQKEAPPDFQCKDKFLLLSVVAP 95 (224)
Q Consensus 23 ~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-ii~P--~~s~~I~Vtl-q~~~~~p~~~~~kdKFlVqs~~~~ 95 (224)
...-.++.+|.+..+| -|.+..-.|+-|.++ |.+| .|.| +..++=.+.+ .+. ....+=|+.|.+..-.
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~-----~~~lklR~klsY~~~g 104 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ-----KQQLRMRIKLTFNWNG 104 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT-----CCCCCEEEEEEEEETT
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC-----CCCEEEEEEEEEEECC
Confidence 3566778889987655 788888899987766 7776 6888 5544422322 222 1134566666666543
Q ss_pred CCC----CcccCCCCcc
Q 027355 96 DGA----TAKDIGPDMF 108 (224)
Q Consensus 96 ~~~----~~~d~~~~~f 108 (224)
... +..+++.+.|
T Consensus 105 ~~~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 105 YKVQSEAEVNNFPPQSW 121 (122)
T ss_dssp EEEEEEEEECCCCGGGT
T ss_pred EEEEEEEEECCCChhhC
Confidence 211 1224555666
No 95
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=58.27 E-value=27 Score=21.95 Aligned_cols=24 Identities=42% Similarity=0.400 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~l 190 (224)
.+|.+....+++|..+|+++++.|
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555556666666655543
No 96
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=56.57 E-value=23 Score=24.99 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.+..|+.|...+..|.++|++|+..+.+..
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777766543
No 97
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=55.89 E-value=23 Score=28.67 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++.++-.+|-+++..+.+|+..|++|...||..
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666666666654
No 98
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.13 E-value=31 Score=23.92 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027355 175 SAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 175 ~~~~en~~L~~el~~lr~ 192 (224)
.|.+++..|++|+..++.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444444443
No 99
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.25 E-value=33 Score=23.73 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++...+..|+.|+..|+-+++.+.-++..+++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777766653
No 100
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=52.83 E-value=30 Score=21.68 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
++...|.+|.++...-+.++..+.++++.
T Consensus 16 KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 16 RLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555556665555555556666665553
No 101
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=52.01 E-value=35 Score=22.12 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027355 173 KTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 173 ~~~~~~en~~L~~el~~lr~ 192 (224)
++.|.+-|..|.+|+-+|.+
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~ 48 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQR 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHH
Confidence 33333444444444444333
No 102
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.93 E-value=27 Score=20.50 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027355 178 QQNQKLR 184 (224)
Q Consensus 178 ~en~~L~ 184 (224)
.+.+.|+
T Consensus 22 ~kl~~Lk 28 (38)
T 2l5g_A 22 EKLLALQ 28 (38)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 103
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.91 E-value=32 Score=27.58 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.++..+...|.++.+...+|+..|++++..+|...
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566666677777777777777777777666544
No 104
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=49.71 E-value=17 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=26.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 157 SSFDDAWSMISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 157 ~~~~~~~~~i~~L~eE~~~~~~en~~L~~e 186 (224)
.+++-+++.|+.|.+..+.|..||.-|++-
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999863
No 105
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=49.30 E-value=68 Score=22.75 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=38.7
Q ss_pred CCCceeEEEEEEcCCC---CeEEEEEeecCC---CcEEEeCCceeeCCCCeEEEEEEecCCc
Q 027355 20 LKKQSSCSMQLTNKTD---KFVAFKVKTTNP---KKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (224)
Q Consensus 20 ~~~~~~~~l~L~N~s~---~~vaFKVKTT~p---~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~ 75 (224)
.++...+.++++|+-. +.+.|-|--..- ..+. .|-|.||+++.+.+.+.|..
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~----~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN----VGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE----ECCBCTTCEEEEEEEECCCS
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE----cCcCCCCCEEEEEEEEecCc
Confidence 3678899999999975 555777665332 3333 36699999999999998864
No 106
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=47.48 E-value=3.9 Score=34.26 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 027355 202 FSTVFVLLIGLLGILVGYLVK 222 (224)
Q Consensus 202 f~~~~~i~v~ll~~~iG~~~~ 222 (224)
.....+.+.++++++|||++|
T Consensus 213 lq~~~~~l~al~slvigf~~g 233 (273)
T 1scf_A 213 LHWAAMALPALFSLIIGFAFG 233 (273)
T ss_dssp ---------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 334555688899999999887
No 107
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=46.72 E-value=28 Score=30.26 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEecCCC
Q 027355 26 CSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (224)
Q Consensus 26 ~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (224)
..+.|+|.|+- -|.++-+++..|.+.++.--|+|+++.++.|-+.... + ...=+|-|--+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGI--K---GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTC--C---CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEeccccc--c---ceEEEEEeeeeeecCC
Confidence 68899998875 5778889999999999999999999999999875322 1 2345677666555443
No 108
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.72 E-value=31 Score=18.17 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027355 177 MQQNQKLRQELEFVRKE 193 (224)
Q Consensus 177 ~~en~~L~~el~~lr~~ 193 (224)
-+|.+.||+.+-.||++
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555544
No 109
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=46.69 E-value=36 Score=25.14 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCeEE---EEEeecCCC---cEEEeCCceeeCCCCeEEEE
Q 027355 26 CSMQLTNKTDKFVA---FKVKTTNPK---KYCVRPNTGIILPRTSCAVT 68 (224)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~Gii~P~~s~~I~ 68 (224)
..++|.|.+++.+. |+++-...+ .| .-|..=+|.||++++|-
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y-~Fp~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSY-KYTSRYVLKAGQTVTIW 72 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEE-ECCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEE-EcCCCcEECCCCEEEEE
Confidence 57899999987764 788765443 35 44666689999997754
No 110
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.34 E-value=49 Score=23.17 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+++..|..+..|+..+.-|...|+.++..+|.
T Consensus 60 ~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555554
No 111
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=46.18 E-value=33 Score=25.88 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=40.1
Q ss_pred ceeEEEEEEcCCCCeE-EEEEeecCCCcEEEe--CCce-eeCCCCe--EEEEEEe-cCCccCCCCCCCCCeEEEEEEec
Q 027355 23 QSSCSMQLTNKTDKFV-AFKVKTTNPKKYCVR--PNTG-IILPRTS--CAVTVTM-QAQKEAPPDFQCKDKFLLLSVVA 94 (224)
Q Consensus 23 ~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-ii~P~~s--~~I~Vtl-q~~~~~p~~~~~kdKFlVqs~~~ 94 (224)
...-.++.+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+.. ++=.+.+ .+.. .+.+=|+.|.+..-
T Consensus 48 ~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~-----~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 48 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK-----QQLRMRIKLTYNHK 121 (140)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTC-----CCCCEEEEEEEEET
T ss_pred EEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC-----CCEEEEEEEEEEEC
Confidence 3555678889887554 788888889887776 5556 5878332 3322222 2211 12455666666654
No 112
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=45.97 E-value=36 Score=27.73 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
...+.+.+..|+++...+.++..+++.|++.+|++..+
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788899999999999999999999998887653
No 113
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.21 E-value=25 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~l 190 (224)
.|+.+++....+++.|+.|++.+
T Consensus 44 eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444433
No 114
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=45.10 E-value=44 Score=25.34 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred eeEEEEEEcCCCCeE-EEEEeecCCCcEEEe--CCce-eeCCCC--eEEEEEEe-cCCccCCCCCCCCCeEEEEEEecC
Q 027355 24 SSCSMQLTNKTDKFV-AFKVKTTNPKKYCVR--PNTG-IILPRT--SCAVTVTM-QAQKEAPPDFQCKDKFLLLSVVAP 95 (224)
Q Consensus 24 ~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-ii~P~~--s~~I~Vtl-q~~~~~p~~~~~kdKFlVqs~~~~ 95 (224)
..-.++.+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+. .++=.+.+ .+.. .+.+=|+.|.+..-.
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~-----~~lklR~klsY~~~g 128 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQK-----QQLRMRIKLTYNHKG 128 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTC-----CCCCCEEEEEEEETT
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC-----CCEEEEEEEEEEECC
Confidence 555678889876544 788888889877776 5556 587843 23322222 2221 124566777666543
No 115
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.69 E-value=44 Score=19.33 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
.+.+.+..|-.+...|..|..+|+..+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4566778888899999999999988664
No 116
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.69 E-value=45 Score=23.12 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027355 176 AMQQNQKLRQELEFVRK 192 (224)
Q Consensus 176 ~~~en~~L~~el~~lr~ 192 (224)
|.+++.++++|+..|+.
T Consensus 43 Lh~~ie~~~eEi~~Lk~ 59 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRK 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333334334443
No 117
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.12 E-value=63 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=25.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 157 SSFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 157 ~~~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+.+..++..+.+|..+......+..+|++++..-+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~ 39 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN 39 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567777888888888877777777777666533
No 118
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.01 E-value=49 Score=20.82 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~ 185 (224)
.|..|..+.+.++.+.+.-++
T Consensus 19 kVdqLssdV~al~~~v~~ak~ 39 (52)
T 1jcd_A 19 KADQASNDANAARSDAQAAKD 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 119
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=43.80 E-value=33 Score=26.18 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+..+.+.+|.+|...+.+++++|++++...+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999998877654
No 120
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.66 E-value=28 Score=18.54 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027355 175 SAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 175 ~~~~en~~L~~el~~lr~ 192 (224)
++.+.|.+|+||+..|..
T Consensus 4 rlkqknarlkqeiaaley 21 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEY 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 455667777777665553
No 121
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=42.52 E-value=41 Score=23.38 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027355 176 AMQQNQKLRQE 186 (224)
Q Consensus 176 ~~~en~~L~~e 186 (224)
|.+.-+.|+.+
T Consensus 38 L~~kt~~L~~~ 48 (91)
T 3hd7_A 38 LDDRADALQAG 48 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333344333
No 122
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.09 E-value=54 Score=19.58 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~ 185 (224)
..|+.|..++..||+.|++
T Consensus 6 aqlenevaslenenetlkk 24 (49)
T 3he5_A 6 AQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHH
Confidence 4555555556666655543
No 123
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=41.59 E-value=64 Score=23.10 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 027355 162 AWSMISKLTEEKTSAMQ-------QNQKLRQELEFVRKEI 194 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~-------en~~L~~el~~lr~~~ 194 (224)
+...++++++|.+.++. ..+.|..|++.||...
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 33444555555554444 3344555666666544
No 124
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.41 E-value=66 Score=23.71 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+.++..+|..|..++..+..+.++|+.+...+.-.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 447778888888888888888888887777655443
No 125
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.39 E-value=65 Score=20.87 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.+.|..|..-.+.+.+|.+.||.++..|..
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 445666665555566655555555554443
No 126
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.54 E-value=63 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.289 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
++...++.|+.|+..++..++.|+..+-
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777655433
No 127
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=40.11 E-value=53 Score=26.58 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
++-..|..|++|+..|+++|..|+.=.+
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666654333
No 128
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=39.96 E-value=45 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
++..++.+|+++....++++..++++|+
T Consensus 139 kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 139 KNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554
No 129
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=39.57 E-value=50 Score=18.50 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
.|..+.||.....+|.+.+++|+..++.
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaiky 30 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKY 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888876654
No 130
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.77 E-value=45 Score=29.62 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
....++..|+++..++.+++++++.++.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 34 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMK 34 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 131
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=38.70 E-value=47 Score=24.47 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCeE---EEEEeecC---CCcEEEeCCceeeCCCCeEEEE
Q 027355 26 CSMQLTNKTDKFV---AFKVKTTN---PKKYCVRPNTGIILPRTSCAVT 68 (224)
Q Consensus 26 ~~l~L~N~s~~~v---aFKVKTT~---p~~Y~VrP~~Gii~P~~s~~I~ 68 (224)
..++|.|.+++.+ .|+++-.. +..-+.-|..-+|.||++++|-
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtIw 67 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIW 67 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEEE
Confidence 5789999987766 46777652 2234446777789999987643
No 132
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.09 E-value=54 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
.+..-.+.+..|+++++.|+++++.|++.
T Consensus 51 iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 51 ILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666688899999999999999999875
No 133
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=37.71 E-value=1.4e+02 Score=27.87 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=38.6
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCc--EEEeCCceee-CCCCeEEEEEEecC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNPKK--YCVRPNTGII-LPRTSCAVTVTMQA 73 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~--Y~VrP~~Gii-~P~~s~~I~Vtlq~ 73 (224)
.+-.-+++|.....-.|+++.+.|.- -.|.|+.=.+ ..|++..+.|++..
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 44456799999999999999999874 4567887666 46888888888753
No 134
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.44 E-value=90 Score=21.21 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++.+.+..|+-|+..++.|+..+++-...++.+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666655555443
No 135
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.34 E-value=58 Score=21.52 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr 191 (224)
..++|+..++...+.|+-|++.+|
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455555555555555555443
No 136
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=43.37 E-value=7.1 Score=21.19 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 027355 207 VLLIGLLGILVGYLVK 222 (224)
Q Consensus 207 ~i~v~ll~~~iG~~~~ 222 (224)
+++..++|..+||++-
T Consensus 5 l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFLF 20 (26)
Confidence 4567778888888873
No 137
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.02 E-value=37 Score=27.20 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
..|.+|+.|...|.++++...+|++.|+++..
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666665544
No 138
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.99 E-value=56 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
++.+.-+.+....|+.+|.+|++|-++|++..+
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888899999999999888887643
No 139
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=36.85 E-value=64 Score=23.18 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
...+.+++..|.++.+.|-+....+++.+..+..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777777777666553
No 140
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=35.74 E-value=50 Score=21.94 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.|..|+.+.+....++++|+.+++.++...
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777788888888888776543
No 141
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.56 E-value=25 Score=21.41 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q 027355 207 VLLIGLLGILVGYLVKT 223 (224)
Q Consensus 207 ~i~v~ll~~~iG~~~~~ 223 (224)
++++++++++++||+++
T Consensus 21 v~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34555666777777754
No 142
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=35.53 E-value=66 Score=24.48 Aligned_cols=43 Identities=5% Similarity=0.022 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCeEE---EEEeecCCCc--EEEeCCceeeCCCCeEEEE
Q 027355 26 CSMQLTNKTDKFVA---FKVKTTNPKK--YCVRPNTGIILPRTSCAVT 68 (224)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~~--Y~VrP~~Gii~P~~s~~I~ 68 (224)
..++|.|.+++.+. |+++=+..+. .+.-|+.=+|.||++++|-
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtVw 85 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIW 85 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEEE
Confidence 57899999987663 6676444321 2345666689999997753
No 143
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.85 E-value=62 Score=28.88 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
.+.+++.+|++++..+.+++++++.|+..
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~ 35 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELET 35 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555444443
No 144
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.61 E-value=1e+02 Score=21.29 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 169 LTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
|.+|++.-+++++.|++++++.++.+
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667777777777777777766543
No 145
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.56 E-value=20 Score=21.92 Aligned_cols=16 Identities=44% Similarity=0.926 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 027355 207 VLLIGLLGILVGYLVK 222 (224)
Q Consensus 207 ~i~v~ll~~~iG~~~~ 222 (224)
++++.++++++|+|++
T Consensus 21 vll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhee
Confidence 3455666666677664
No 146
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=33.68 E-value=36 Score=22.20 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=17.2
Q ss_pred EEEEEcCCCCeEEEEEeecCC
Q 027355 27 SMQLTNKTDKFVAFKVKTTNP 47 (224)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p 47 (224)
.|++...+.+.+.|||+.|.|
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577787778889999998876
No 147
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=33.08 E-value=1e+02 Score=20.10 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCch
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEISKS-RAGGFS 203 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~~~~-~~~gf~ 203 (224)
...-.|++.|..+.--|++||.-.|...-.+ +..||-
T Consensus 6 r~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~~p~~l 43 (65)
T 1yhn_B 6 EQILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLL 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHH
Confidence 4445689999999999999999999876433 333443
No 148
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=32.68 E-value=1e+02 Score=22.67 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.2
Q ss_pred CCceeEEEEEEcCCCCeEEEEEee
Q 027355 21 KKQSSCSMQLTNKTDKFVAFKVKT 44 (224)
Q Consensus 21 ~~~~~~~l~L~N~s~~~vaFKVKT 44 (224)
+....-.|+|+|+++..+-+-.-|
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEESS
T ss_pred CCeEEEEEEEEcCCCCcEEEEeCC
Confidence 457788999999999888877654
No 149
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=32.18 E-value=58 Score=24.62 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCCeE---EEEEeecCCC---cEEEeCCceeeCCCCeEEEE
Q 027355 25 SCSMQLTNKTDKFV---AFKVKTTNPK---KYCVRPNTGIILPRTSCAVT 68 (224)
Q Consensus 25 ~~~l~L~N~s~~~v---aFKVKTT~p~---~Y~VrP~~Gii~P~~s~~I~ 68 (224)
-..|+|.|.+++.+ .|+++=...+ .-+.-|+.=+|.||++++|-
T Consensus 33 GefV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtIw 82 (139)
T 2lll_A 33 GKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTVW 82 (139)
T ss_dssp CSEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEEE
T ss_pred CCEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEE
Confidence 35799999997766 4778766432 23345777789999987643
No 150
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.02 E-value=1e+02 Score=21.57 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+..+.+..+++++..+..+...|+.++..++..
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666665544
No 151
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.76 E-value=47 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L 183 (224)
+.+.|..|++++..+..+...+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444
No 152
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.58 E-value=1e+02 Score=22.31 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
++.+++..|+++.+.+....+.|.+|-+
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 153
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=31.42 E-value=52 Score=24.06 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 169 LTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
|.++++.|..+.++|++++..|+...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566667777778888887777654
No 154
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=31.37 E-value=66 Score=23.80 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+|..++..|..+.+.|+++|..+++..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~ 30 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETAR 30 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666543
No 155
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.36 E-value=67 Score=22.33 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.+|+.++..|.++..+|++++..++...
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888888888888888777543
No 156
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=30.80 E-value=30 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 167 SKLTEEKTSAMQQNQKLRQEL 187 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el 187 (224)
..|.+|..+|+-||..|++.+
T Consensus 11 EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666667778888887765
No 157
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=30.35 E-value=1.1e+02 Score=22.58 Aligned_cols=22 Identities=27% Similarity=0.438 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~ 185 (224)
+++..|++++.++...+++|++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777677776665
No 158
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.76 E-value=35 Score=20.73 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhcC
Q 027355 208 LLIGLLGILVGYLVKT 223 (224)
Q Consensus 208 i~v~ll~~~iG~~~~~ 223 (224)
+++++++++++||+++
T Consensus 21 ~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 21 FILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3445566666677654
No 159
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=29.72 E-value=72 Score=17.30 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 169 LTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~el~~lr 191 (224)
|..-..++..||.+|+...+.|-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677888877666544
No 160
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=29.70 E-value=1.1e+02 Score=20.59 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
.+..--+.+..|+++++.|++|...|+...+.
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666788889999999999999999987653
No 161
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=29.36 E-value=1.5e+02 Score=21.00 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 027355 204 TVFVLLIGLLGILVGYLVKT 223 (224)
Q Consensus 204 ~~~~i~v~ll~~~iG~~~~~ 223 (224)
++.++++++++++++.+++.
T Consensus 87 ~i~l~~~~i~~~i~~~~~~~ 106 (109)
T 3hd7_B 87 IMIIICCVILGIIIASTIGG 106 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhcc
Confidence 33445566777778888764
No 162
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.20 E-value=96 Score=20.96 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
.|..|.+..-.-.+++.+|+.++..|..+..
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677777777777766544
No 163
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=29.15 E-value=51 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCCeEEEEEeecCC
Q 027355 25 SCSMQLTNKTDKFVAFKVKTTNP 47 (224)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p 47 (224)
.-.|+++..+.+.|.|||+.|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 35788888888899999998887
No 164
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.56 E-value=1.2e+02 Score=20.73 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027355 166 ISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 166 i~~L~eE~~~~~~en~~L~~ 185 (224)
|.+|+.|...+....+.|++
T Consensus 48 i~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 48 VTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 165
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=28.49 E-value=1.1e+02 Score=21.87 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=35.0
Q ss_pred CCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCC------ceeeCCCCeEEEEE
Q 027355 20 LKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPN------TGIILPRTSCAVTV 69 (224)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~------~Gii~P~~s~~I~V 69 (224)
.+......++++|.++..+.||+.==...-+.|.+. .=.|.++++..|.-
T Consensus 34 ~nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~ 89 (107)
T 4gio_A 34 SNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRK 89 (107)
T ss_dssp TTSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEE
Confidence 355677889999999999999988777777766552 22455666555543
No 166
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=28.48 E-value=1.1e+02 Score=18.94 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+|-.-...+......+.||.++|++...
T Consensus 15 ~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 15 QLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3333444444555555677777776544
No 167
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.47 E-value=33 Score=25.46 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=29.4
Q ss_pred ceeEEEEEEcCCCCeE-EEEEeecCCCcEEEe--CCce-eeCCCCe
Q 027355 23 QSSCSMQLTNKTDKFV-AFKVKTTNPKKYCVR--PNTG-IILPRTS 64 (224)
Q Consensus 23 ~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-ii~P~~s 64 (224)
...-.+..+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+..
T Consensus 39 ~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 39 LLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTC
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCC
Confidence 3555778889887655 788888888876665 6556 5888544
No 168
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.30 E-value=1e+02 Score=21.88 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 157 SSFDDAWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 157 ~~~~~~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+.+++|...|..-+.++..+...|.+|+.+|..
T Consensus 62 sLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 62 SLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577777777777777777888888777653
No 169
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.27 E-value=24 Score=29.36 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+..++...+.++...+.+||+.++++++.|++..
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666666666665543
No 170
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.22 E-value=1.4e+02 Score=20.35 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+++..|..+..++..+.-|...++...+.+|.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666555555543
No 171
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.06 E-value=1.4e+02 Score=20.98 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
+.....++.+|+.+|...++.|..+++.+..
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777765443
No 172
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.60 E-value=1.4e+02 Score=20.91 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
.+++..|..|+..+-.++..++.|...|
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 173
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.42 E-value=1.2e+02 Score=19.02 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+++...+..|....+.|..+...|+.+..
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444
No 174
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=27.40 E-value=24 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 168 KLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 168 ~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+++.|.+.+.+-++.++.++..||.+..
T Consensus 3 KlQrELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 3 KLQRELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp SSSSHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666777777777777776543
No 175
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.26 E-value=95 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 172 EKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 172 E~~~~~~en~~L~~el~~lr~~ 193 (224)
|++++.++++.|++|++.|++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666543
No 176
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=26.96 E-value=75 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKL 183 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L 183 (224)
..+.+.|..|+.|..++.++..++
T Consensus 35 ~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 35 KASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655555554433
No 177
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=26.71 E-value=59 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~ 185 (224)
.+.++...|+++...+++|+++|++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566677777777777777777764
No 178
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=25.94 E-value=1.8e+02 Score=20.66 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=32.5
Q ss_pred eeEEEEEEcCCCCeEE-EEEeec-----------------CCCcEEEeCC--ceeeCC-CCeEEEEEEec
Q 027355 24 SSCSMQLTNKTDKFVA-FKVKTT-----------------NPKKYCVRPN--TGIILP-RTSCAVTVTMQ 72 (224)
Q Consensus 24 ~~~~l~L~N~s~~~va-FKVKTT-----------------~p~~Y~VrP~--~Gii~P-~~s~~I~Vtlq 72 (224)
-...++|+|.++..|. +.|.=+ +-..|.|+|. -|-|.| |+++.+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 4577888888765443 333222 3468899875 489999 99887766543
No 179
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.43 E-value=1.1e+02 Score=18.24 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQ 185 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~ 185 (224)
....|.+-++-|+.||+.|+|
T Consensus 18 ~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 334445455555555554444
No 180
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=25.35 E-value=1.2e+02 Score=23.17 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=26.2
Q ss_pred EEEEEcCCCCeE-EEEEeecCCCcEEEe--CCce-eeCCCC
Q 027355 27 SMQLTNKTDKFV-AFKVKTTNPKKYCVR--PNTG-IILPRT 63 (224)
Q Consensus 27 ~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-ii~P~~ 63 (224)
.++.+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+.
T Consensus 58 ~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~ 98 (153)
T 1p4u_A 58 VVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFS 98 (153)
T ss_dssp EEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCB
T ss_pred EEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCC
Confidence 667788876544 788888888877776 5555 577755
No 181
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.17 E-value=1.6e+02 Score=19.72 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 192 (224)
++.....++.+|+.++...++.|+++++....
T Consensus 31 ~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 31 AAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456667777777777777777765443
No 182
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.98 E-value=1.1e+02 Score=17.74 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
.++=.+|-.++..-.+|+.+|++|-+.|+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33445666666666666666666655544
No 183
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.95 E-value=1.3e+02 Score=20.60 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+.++-.+|-.++..+..++..|++|-.
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~ 58 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARLRKENK 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 184
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.75 E-value=1.1e+02 Score=27.12 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+.+..++|.+.+++|++++++++..+.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 334444444555555555555544433
No 185
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.72 E-value=1.5e+02 Score=19.44 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027355 176 AMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 176 ~~~en~~L~~el~~lr~~~ 194 (224)
+..+..+|.+|++.+.+..
T Consensus 37 L~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 37 NNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444555555444443
No 186
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=24.70 E-value=1.4e+02 Score=20.32 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
....|..|+++....+.++..++++|+.
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556777777777777777777777764
No 187
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=24.61 E-value=1.3e+02 Score=23.22 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
++|.+|++|+..+++.+++-+++|.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~Lq 29 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQ 29 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555554444443
No 188
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=24.52 E-value=1.1e+02 Score=23.32 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCeE---EEEEeecC---CCcEEEeCCceeeCCCCeEEEE
Q 027355 26 CSMQLTNKTDKFV---AFKVKTTN---PKKYCVRPNTGIILPRTSCAVT 68 (224)
Q Consensus 26 ~~l~L~N~s~~~v---aFKVKTT~---p~~Y~VrP~~Gii~P~~s~~I~ 68 (224)
..|+|.|.+++.+ -|+|+=.. +..-+.-|..=+|.||.+++|-
T Consensus 50 efV~L~N~s~~~~~L~GW~L~r~vdg~~~~~y~Fp~~~~L~pg~tVtIw 98 (151)
T 1ufg_A 50 KFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIW 98 (151)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCCEEEECCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEE
Confidence 4789999987666 47776442 2233446777789999987643
No 189
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.34 E-value=55 Score=27.12 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 027355 180 NQKLRQELEFVRKEIS 195 (224)
Q Consensus 180 n~~L~~el~~lr~~~~ 195 (224)
++.|++|..+||+...
T Consensus 45 ~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 45 VADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3455566677776544
No 190
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=24.17 E-value=72 Score=18.40 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
....++|+.+||++-
T Consensus 13 ~~LvLvGla~Gf~LL 27 (35)
T 1vf5_F 13 FGLIFVGWGLGVLLL 27 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 445566899998863
No 191
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=24.11 E-value=2.9e+02 Score=25.90 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=39.0
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEE--EeCCceee-CCCCeEEEEEEecC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYC--VRPNTGII-LPRTSCAVTVTMQA 73 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~--VrP~~Gii-~P~~s~~I~Vtlq~ 73 (224)
.+..-++||..+..-.|+++.++|.-.. |.|..=.. ..|++....|++.+
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~ 612 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRY 612 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEE
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEe
Confidence 5678889999988888999999998665 55998766 48999999999865
No 192
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.03 E-value=74 Score=26.57 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
++..++..|++....|.++.+.+++|+..||....
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666666777776666554
No 193
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.03 E-value=1.6e+02 Score=23.14 Aligned_cols=35 Identities=6% Similarity=-0.048 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 160 DDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 160 ~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
+-|...+.+|+.+++.|.+++...+++...+++..
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888877777666553
No 194
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.98 E-value=1.8e+02 Score=19.95 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027355 176 AMQQNQKLRQELEFVRK 192 (224)
Q Consensus 176 ~~~en~~L~~el~~lr~ 192 (224)
+...|+.|..|+..++.
T Consensus 50 ae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 195
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=23.84 E-value=1.3e+02 Score=18.30 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Q 027355 171 EEKTSAMQQNQKLRQELE-FVRKE 193 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~-~lr~~ 193 (224)
|-....++|.+++++|+. .+|..
T Consensus 15 EIL~E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 15 ELLEEVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888754 44443
No 196
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.34 E-value=95 Score=20.79 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
....+..|++|...--+|+.+|++.+.
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666665544
No 197
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.30 E-value=80 Score=23.29 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027355 171 EEKTSAMQQNQKLRQELEFVRK 192 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr~ 192 (224)
.|+..|++|.+.++....+|+.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666654
No 198
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=23.15 E-value=75 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=18.9
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNP 47 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p 47 (224)
..-.|++...+.+.+.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 456788887777888899988876
No 199
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=22.98 E-value=1.9e+02 Score=20.94 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+++..|..+..|+..+.-|...++..++.+|
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 200
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=22.83 E-value=89 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 171 EEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++++.|..+.+.|++++..+++.
T Consensus 23 ~~l~~L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 23 VKLANMEAEINTLKSKLELTNKL 45 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445556666666666666653
No 201
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.72 E-value=1.8e+02 Score=20.85 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
+.+|+=....|.-|++++.-|++.|+..++
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LE 40 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555544444
No 202
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.55 E-value=1.3e+02 Score=17.83 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 171 EEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 171 eE~~~~~~en~~L~~el~~lr~~ 193 (224)
||...+..|.+.|.+.+..|+.+
T Consensus 20 eelaaleselqalekklaalksk 42 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 203
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=22.54 E-value=1.2e+02 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.8
Q ss_pred ceeeCCCCeEEEEEEe
Q 027355 56 TGIILPRTSCAVTVTM 71 (224)
Q Consensus 56 ~Gii~P~~s~~I~Vtl 71 (224)
.++|.||++..|.++.
T Consensus 83 t~~l~pGes~~vtf~~ 98 (128)
T 2iaa_C 83 TSVIGGGETDSVTFDV 98 (128)
T ss_dssp CCCBCTTCEEEEEEES
T ss_pred ceeeCCCCEEEEEEec
Confidence 4678999999999985
No 204
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=22.48 E-value=1.4e+02 Score=23.77 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.0
Q ss_pred EEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEE
Q 027355 27 SMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (224)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~V 69 (224)
.|++.|+|..++.|-=-+.+-+.+ + .+.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999875322233333 2 37999999988764
No 205
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.44 E-value=1.3e+02 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
+.+.+..|++|..++.+++++|+.+++.+-
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666655555433
No 206
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.40 E-value=1.8e+02 Score=19.41 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
.|..|..|.+.+.++...+++|+..
T Consensus 7 ~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 7 DIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 207
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.37 E-value=4.8 Score=27.88 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 169 LTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 169 L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
..+|+..|++||..|+.|++.|++..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~ 89 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESC 89 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777788888888877776543
No 208
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=22.31 E-value=1.3e+02 Score=20.69 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
-+++--|-+..|++++++++++..++++..
T Consensus 33 IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le 62 (83)
T 4ath_A 33 ILKASVDYIRKLQREQQRAKDLENRQKKLE 62 (83)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666888889999999988888777643
No 209
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=22.21 E-value=78 Score=23.12 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=19.5
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 027355 24 SSCSMQLTNKTDKFVAFKVKTTNP 47 (224)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p 47 (224)
..-.|++.......|.||||.|.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~ 62 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTH 62 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEEcCCCCEEEEEEccCCh
Confidence 456788888878889999999887
No 210
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=22.21 E-value=98 Score=21.35 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCeEEEEEeecCC
Q 027355 25 SCSMQLTNKTDKFVAFKVKTTNP 47 (224)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p 47 (224)
.-.|+++..+.+.|.|||+.|.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 45677777777888888888876
No 211
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.11 E-value=1.3e+02 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027355 161 DAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 195 (224)
Q Consensus 161 ~~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 195 (224)
+++..|..|+++++.-.++++.||.-|+.+|.+++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888777777777777776665544
No 212
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.85 E-value=1.8e+02 Score=21.14 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
..+++..|..|+.|+++++.++..|...+..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346677778888888888888877766555443
No 213
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.74 E-value=1.5e+02 Score=21.77 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027355 178 QQNQKLRQELEFVRKE 193 (224)
Q Consensus 178 ~en~~L~~el~~lr~~ 193 (224)
.+|..|+.|++.+++.
T Consensus 68 ~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 68 DDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666665543
No 214
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.69 E-value=1.7e+02 Score=18.93 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 164 SMISKLTEEKTSAMQQNQKLRQELE 188 (224)
Q Consensus 164 ~~i~~L~eE~~~~~~en~~L~~el~ 188 (224)
..+=.|.+|...|++++.++++=++
T Consensus 7 DtVYalkDev~eLk~e~k~~k~~le 31 (61)
T 3l4f_A 7 DTVYALKDEVQELRQDNKKMKKSLE 31 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777778888877765444
No 215
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.33 E-value=2.1e+02 Score=19.86 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFV 190 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~l 190 (224)
....+..|++++..+..+...+++.+..+
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555544444
No 216
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.18 E-value=14 Score=21.47 Aligned_cols=15 Identities=47% Similarity=0.724 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
+++.++++.+|.|++
T Consensus 18 ll~vii~l~~~~~iR 32 (35)
T 1iij_A 18 LLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHhheEEe
Confidence 344444455555544
No 217
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.07 E-value=29 Score=28.88 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=18.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027355 161 DAWSMISKLT---EEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 161 ~~~~~i~~L~---eE~~~~~~en~~L~~el~~ 189 (224)
++++++.+|+ .+...+++||++|++.|..
T Consensus 30 ~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 30 HLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555555 3445667788888876654
No 218
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.07 E-value=1.8e+02 Score=20.99 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
+.++++..+++...|.++...|+..++.|.+.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665555543
No 219
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.02 E-value=33 Score=19.92 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLR 184 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~ 184 (224)
....|..|+.+.+.+.++...++
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 220
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.82 E-value=1e+02 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 165 MISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 165 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++..|+++.+.|.+|.++|+++.+.+++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 67788888888888888887777766654
No 221
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=20.67 E-value=91 Score=18.43 Aligned_cols=15 Identities=20% Similarity=0.647 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhc
Q 027355 208 LLIGLLGILVGYLVK 222 (224)
Q Consensus 208 i~v~ll~~~iG~~~~ 222 (224)
....++|+.+||++-
T Consensus 14 ~~L~LvGla~Gf~LL 28 (39)
T 1q90_M 14 VGMTLVGLAIGFVLL 28 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445566899998863
No 222
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=20.63 E-value=2.2e+02 Score=21.37 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=38.5
Q ss_pred ceeEEEEEEcCCC-----CeEEEEEeecCCCcE-EEeCCceeeCCCCeEEEEEEec
Q 027355 23 QSSCSMQLTNKTD-----KFVAFKVKTTNPKKY-CVRPNTGIILPRTSCAVTVTMQ 72 (224)
Q Consensus 23 ~~~~~l~L~N~s~-----~~vaFKVKTT~p~~Y-~VrP~~Gii~P~~s~~I~Vtlq 72 (224)
.....++++|+.+ .-++|.++...-..- -+-|..|.|.++++..+.|-..
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 3568999999976 567999987665433 5678889999999988887654
No 223
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.61 E-value=1.7e+02 Score=18.54 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027355 167 SKLTEEKTSAMQQNQKLRQELEFVRKEISK 196 (224)
Q Consensus 167 ~~L~eE~~~~~~en~~L~~el~~lr~~~~~ 196 (224)
-.|-+.++.|..++.+-.||+++|++....
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666667888888876554
No 224
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.56 E-value=2e+02 Score=21.01 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 159 FDDAWSMISKLTEEKTSAMQQNQKLRQELEFVR 191 (224)
Q Consensus 159 ~~~~~~~i~~L~eE~~~~~~en~~L~~el~~lr 191 (224)
..+++..|..|+.|+++++.++..|...+..+.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346777788888888888887777766555443
No 225
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.46 E-value=1.7e+02 Score=18.43 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQE 186 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~e 186 (224)
+...|..|.++...++.+.++.-+|
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~e 29 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKL 29 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444333
No 226
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.37 E-value=2.2e+02 Score=19.81 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
...+..+.+++..+..+...+++++..++..
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666655544
No 227
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.14 E-value=2.2e+02 Score=20.68 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 162 AWSMISKLTEEKTSAMQQNQKLRQELEF 189 (224)
Q Consensus 162 ~~~~i~~L~eE~~~~~~en~~L~~el~~ 189 (224)
+.+.+.+.+.|...|+.++..|+..++.
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666655543
No 228
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.08 E-value=1.8e+02 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKE 193 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 193 (224)
++.|...-+....++.+|.+|++|-++|.+.
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666678899999999999999988764
No 229
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.08 E-value=2e+02 Score=20.82 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027355 163 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 194 (224)
Q Consensus 163 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 194 (224)
.++|..|+..+..+..++.+|.-|++.++...
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777776554
No 230
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=20.06 E-value=1.3e+02 Score=22.09 Aligned_cols=16 Identities=31% Similarity=0.191 Sum_probs=13.7
Q ss_pred ceeeCCCCeEEEEEEe
Q 027355 56 TGIILPRTSCAVTVTM 71 (224)
Q Consensus 56 ~Gii~P~~s~~I~Vtl 71 (224)
..+|.||++..|.++.
T Consensus 84 t~~l~pGet~svtf~~ 99 (129)
T 2ccw_A 84 TKVIGGGESDSVTFDV 99 (129)
T ss_dssp CCCBCTTCEEEEEEEG
T ss_pred eeEECCCCEEEEEEec
Confidence 4578999999999986
Done!