Query 027357
Match_columns 224
No_of_seqs 53 out of 55
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fjr_A Repressor protein CI; g 70.6 7.9 0.00027 30.3 5.7 48 157-208 124-186 (189)
2 1kca_A Repressor protein CI; g 69.3 14 0.00049 27.2 6.6 73 132-212 13-107 (109)
3 3bdn_A Lambda repressor; repre 66.8 7.4 0.00025 31.5 4.9 73 132-212 140-234 (236)
4 1jhf_A LEXA repressor; LEXA SO 59.7 59 0.002 25.7 9.0 85 115-210 96-199 (202)
5 1umu_A UMUD'; induced mutagene 50.9 42 0.0014 24.6 6.2 70 132-210 27-114 (116)
6 3k2z_A LEXA repressor; winged 45.1 40 0.0014 27.0 5.7 84 114-208 93-194 (196)
7 3cnr_A Type IV fimbriae assemb 14.5 50 0.0017 25.4 0.8 22 22-43 83-107 (117)
8 1zxu_A AT5G01750 protein; PFAM 13.1 5.3E+02 0.018 20.7 6.9 59 152-212 34-96 (217)
9 2xtc_A F-box-like/WD repeat-co 12.6 73 0.0025 23.9 1.2 16 15-30 48-63 (90)
10 3twe_A Alpha4H; unknown functi 9.0 1.1E+02 0.0039 18.0 0.9 18 7-25 8-25 (27)
No 1
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=70.62 E-value=7.9 Score=30.32 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=32.1
Q ss_pred EEEEeCCCcccccCCcEEEEEcCCCeEEEee-----c-cc-cc--------ccCccccceeEEEEEc
Q 027357 157 LVVADRSRKEVAVDDGFYLVVGDGGELKVER-----G-SM-LK--------ERGVEESLGTVALVVR 208 (224)
Q Consensus 157 LvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~-----G-~~-l~--------e~~~~~~LG~VilvvR 208 (224)
+|+||++ + . .+++.|++.-+| ++.+.+ | .. |. ......++|+|+-+.|
T Consensus 124 ~v~Vd~~-~-~-~~g~i~vv~~~g-~~~vKrl~~~~~~~i~L~s~N~~~~i~~~~i~IiG~Vv~~~r 186 (189)
T 2fjr_A 124 IYFVDKQ-A-S-LSDGLWLVDIKG-AISIRELTKLPGRKLHVAGGKVPFECGIDDIKTLGRVVGVYS 186 (189)
T ss_dssp EEEEETT-C-C-SCSEEEEEEETT-EEEEEEEEEETTTEEEEESSSSCEEEETTSSEEEEEEEEEEE
T ss_pred EEEEEcC-C-c-cCCCEEEEEeCC-eEEEEEEEECCCCEEEEEeCCCCeEecccceEEEEEEEEEEE
Confidence 6778998 4 5 578888888777 666653 2 21 21 1145678899888876
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=69.34 E-value=14 Score=27.25 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=43.6
Q ss_pred eEEEEecCCCcC------CCcCCCCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEee-----cc-cccc------
Q 027357 132 GVVVAFSDARVL------PWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVER-----GS-MLKE------ 193 (224)
Q Consensus 132 PVaI~~~~~~~L------P~~~~~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~-----G~-~l~e------ 193 (224)
-+++.+..+.-. |.-.++ - +|++|+..+ . .++.+|++..+++++.+.+ |. +|..
T Consensus 13 ~f~~~V~GdSM~~~~g~~p~i~~G-----d-~v~Vd~~~~-~-~~Gdivv~~~~~~~~~vKrl~~~~~~~~L~s~N~~y~ 84 (109)
T 1kca_A 13 AFWLEVEGNSMTAPTGSKPSFPDG-----M-LILVDPEQA-V-EPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYP 84 (109)
T ss_dssp CEEEECCSSTTCCCTTCSSCCCTT-----C-EEEEETTSC-C-CTTCEEEEECSTTCEEEEEEEEETTEEEEECSSTTSC
T ss_pred EEEEEEeCcCcCCCCCCCCeeCCC-----C-EEEEecCCc-C-CCCCEEEEEECCCeEEEEEEEEeCCEEEEEECCCCCC
Confidence 566777666633 333323 2 566788764 6 6677888875543444443 22 2221
Q ss_pred ----cCccccceeEEEEEcCCCC
Q 027357 194 ----RGVEESLGTVALVVRPPKE 212 (224)
Q Consensus 194 ----~~~~~~LG~VilvvRPpk~ 212 (224)
.....++|+|+-+.||++.
T Consensus 85 ~~~~~~~~~IiG~Vv~~~~~~~~ 107 (109)
T 1kca_A 85 MIPCNESCSVVGKVIASQWPEET 107 (109)
T ss_dssp CEECCTTCEEEEEEEEEECCGGG
T ss_pred CEEcCCCcEEEEEEEEEEeCHHH
Confidence 1346799999999999763
No 3
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=66.77 E-value=7.4 Score=31.53 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=45.4
Q ss_pred eEEEEecCCCcC------CCcCCCCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEee-----cc-cccc------
Q 027357 132 GVVVAFSDARVL------PWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVER-----GS-MLKE------ 193 (224)
Q Consensus 132 PVaI~~~~~~~L------P~~~~~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~-----G~-~l~e------ 193 (224)
-+++-+..+.-. |.-.++ - +|++|+.. +. .++.+|++.-+++++.+.+ |. +|..
T Consensus 140 ~~~l~V~GdSM~~~~g~~P~i~~G-----d-~v~vd~~~-~~-~~g~ivv~~~~~~~~~vKrl~~~~~~~~L~s~N~~y~ 211 (236)
T 3bdn_A 140 AFWLEVEGNSMTAPTGSKPSFPDG-----M-LILVDPEQ-AV-EPGDFCIARLGGDEFTFKKLIRGSGQVFLQPLNPQYP 211 (236)
T ss_dssp CEEEECCSSSSCCCSSCSSCCCSS-----C-EEEECCSS-CC-CTTSEEEEESTTTCCCCEEEECCSSSCEEECSSTTSC
T ss_pred EEEEEEeCCCcCCCCCCCCcCCCC-----C-EEEECCCC-CC-CCCcEEEEEECCCeEEEEEEEEcCCcEEEEeCCCCCC
Confidence 688888777733 433333 2 55679877 56 6777888876432444332 32 1211
Q ss_pred ----cCccccceeEEEEEcCCCC
Q 027357 194 ----RGVEESLGTVALVVRPPKE 212 (224)
Q Consensus 194 ----~~~~~~LG~VilvvRPpk~ 212 (224)
.....++|+|+-+.||.+.
T Consensus 212 ~~~~~~~~~IiG~Vv~~~~~~~~ 234 (236)
T 3bdn_A 212 MIPCNESCSVVGKVIASQWPEET 234 (236)
T ss_dssp CBC--CCCEEEEEEEECCCCSSS
T ss_pred CeecCCCcEEEEEEEEEEcCHHh
Confidence 1347899999999998764
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=59.67 E-value=59 Score=25.74 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=50.7
Q ss_pred eEEEcCCchhhhccccceEEEEecCCCcCCCcCCCCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEee----c-c
Q 027357 115 RWVVLPGWEPVVGLRNGGVVVAFSDARVLPWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVER----G-S 189 (224)
Q Consensus 115 ~WVaLPgWq~v~~a~d~PVaI~~~~~~~LP~~~~~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~----G-~ 189 (224)
.++.+|.. ++...+ -+++-+..+.-.|... ...-+ |++|+.. +. .++.+|++.-+| ++.+.+ | .
T Consensus 96 ~~~~~~~~--~~~~~~-~~~~~v~GdSM~p~~i----~~Gd~-v~vd~~~-~~-~~G~i~v~~~~~-~~~vKrl~~~~~~ 164 (202)
T 1jhf_A 96 GHYQVDPS--LFKPNA-DFLLRVSGMSMKDIGI----MDGDL-LAVHKTQ-DV-RNGQVVVARIDD-EVTVKRLKKQGNK 164 (202)
T ss_dssp EEECBCGG--GSSSCC-CEEEECCSSTTGGGTC----CTTCE-EEEEECS-CC-CTTSEEEEEETT-EEEEEEEEEETTE
T ss_pred cEEeCChH--HCCCCC-EEEEEECCCCCCCCCC----CCCCE-EEEeccC-Cc-CCCeEEEEEECC-EEEEEEEEEeCCE
Confidence 35556653 233344 6888888887557622 22234 4468875 46 677888888777 666553 2 1
Q ss_pred -ccc-------------ccCccccceeEEEEEcCC
Q 027357 190 -MLK-------------ERGVEESLGTVALVVRPP 210 (224)
Q Consensus 190 -~l~-------------e~~~~~~LG~VilvvRPp 210 (224)
+|. +.....++|+|+-+.|.-
T Consensus 165 ~~l~s~N~~y~~~~~~~~~~~~~IiG~Vv~~~r~~ 199 (202)
T 1jhf_A 165 VELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNG 199 (202)
T ss_dssp EEEECSSTTCCCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred EEEEECCCCCCCEEccCCCCceEEEEEEEEEEEcc
Confidence 111 113467999999888753
No 5
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=50.93 E-value=42 Score=24.56 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=43.1
Q ss_pred eEEEEecCCCcCCC-cCCCCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEee----c-cccc------------c
Q 027357 132 GVVVAFSDARVLPW-RANRWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVER----G-SMLK------------E 193 (224)
Q Consensus 132 PVaI~~~~~~~LP~-~~~~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~----G-~~l~------------e 193 (224)
-+++-+..+.-.|. -.++ - +|++|++.+ . .++..|++..+| ++.+.+ + -+|. .
T Consensus 27 ~~~~~v~GdSM~p~~i~~G-----d-~v~vd~~~~-~-~~gdivv~~~~~-~~~vKr~~~~~~~~L~s~N~~y~~~~i~~ 97 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISDG-----D-LLIVDSAIT-A-SHGDIVIAAVDG-EFTVKKLQLRPTVQLIPMNSAYSPITISS 97 (116)
T ss_dssp EEEEECCSSTTGGGTCCTT-----C-EEEEETTSC-C-CTTCEEEEEETT-EEEEEEEECSSSCEEECSSTTSCCEECCT
T ss_pred EEEEEECCCCcCCCCCCCC-----C-EEEEEcCCC-C-CCCCEEEEEECC-EEEEEEEEeCCcEEEECCCCCCCCEEcCC
Confidence 67788877775563 3333 2 566798764 6 677788888777 776663 1 1111 1
Q ss_pred cCccccceeEEEEEcCC
Q 027357 194 RGVEESLGTVALVVRPP 210 (224)
Q Consensus 194 ~~~~~~LG~VilvvRPp 210 (224)
.....++|+|+-+.|.-
T Consensus 98 ~~~~~IiG~Vv~~~r~~ 114 (116)
T 1umu_A 98 EDTLDVFGVVIHVVKAA 114 (116)
T ss_dssp TSCEEEEEEEEEEEC--
T ss_pred CCeEEEEEEEEEEEEec
Confidence 12457888888887753
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=45.14 E-value=40 Score=26.95 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=49.2
Q ss_pred eeEEEcCCchhhhccccceEEEEecCCCcC-CCcCCCCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEee-----
Q 027357 114 TRWVVLPGWEPVVGLRNGGVVVAFSDARVL-PWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVER----- 187 (224)
Q Consensus 114 ~~WVaLPgWq~v~~a~d~PVaI~~~~~~~L-P~~~~~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~----- 187 (224)
..|+.+|.-.. ...+.-+++-+..+.-. |.-.+| - +|++|++. +. .++.+|++.-+| ++.+.+
T Consensus 93 ~~~~~~~~~~~--~~~~~~f~l~v~GdSM~~p~i~~G-----D-~viv~~~~-~~-~~G~ivv~~~~~-~~~vKr~~~~~ 161 (196)
T 3k2z_A 93 EDYIEIPESFL--SSGYDHFLLKVKGESMIEEHICDG-----D-LVLVRRQD-WA-QNGDIVAAMVDG-EVTLAKFYQRG 161 (196)
T ss_dssp EEEEECCGGGS--CTTCCEEEEECCSSTTGGGTCCTT-----C-EEEEEECS-CC-CTTCEEEEEETT-EEEEEEEEEET
T ss_pred ceEEECCHHHh--CCCCCEEEEEEeCCCcCCCCCCCC-----C-EEEEeccC-cC-CCCCEEEEEECC-cEEEEEEEEEC
Confidence 36777775322 22223677777777722 444444 2 67789874 45 677788887777 666663
Q ss_pred cc-ccc-----------ccCccccceeEEEEEc
Q 027357 188 GS-MLK-----------ERGVEESLGTVALVVR 208 (224)
Q Consensus 188 G~-~l~-----------e~~~~~~LG~VilvvR 208 (224)
|. +|. ......++|+|+-+.|
T Consensus 162 ~~~~L~~~N~~y~~i~i~~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 162 DTVELRPANREMSSMFFRAEKVKILGKVVGVFR 194 (196)
T ss_dssp TEEEEECSCTTSCCEEEEGGGCEEEEEEEEEEE
T ss_pred CEEEEEECCCCCCCEEecCCCEEEEEEEEEEEE
Confidence 21 111 1234577888887776
No 7
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=14.53 E-value=50 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=17.0
Q ss_pred Hhhhhhcc---HHHHHHHHHHHccC
Q 027357 22 LALDVVES---EDAKNVITRELEGG 43 (224)
Q Consensus 22 kgL~~A~S---e~AR~~ie~lL~~~ 43 (224)
=|++|..- +..|++||++|.+.
T Consensus 83 ~GVqF~~~~~~~~~r~~Ie~~L~~~ 107 (117)
T 3cnr_A 83 IGVQFPDGPEGEAVRNKIETLLAGL 107 (117)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHC--
T ss_pred eEEEEecCcCCHHHHHHHHHHHHhh
Confidence 37888873 78999999999955
No 8
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=13.12 E-value=5.3e+02 Score=20.73 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=29.5
Q ss_pred ccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEe-ecccccccCc---cccceeEEEEEcCCCC
Q 027357 152 YEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVE-RGSMLKERGV---EESLGTVALVVRPPKE 212 (224)
Q Consensus 152 k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~-~G~~l~e~~~---~~~LG~VilvvRPpk~ 212 (224)
..+|..+.+-+..-.+ .+++|-+-+.+| ++.+. .|.++.-... --.-|+.++-+|.|..
T Consensus 34 ~~~~~~l~vkqk~~~~-~~~~f~V~D~~G-~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~ 96 (217)
T 1zxu_A 34 APYPIDMAIVRKMMSL-TDGNFVITDVNG-NLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV 96 (217)
T ss_dssp CSSCEEEEEECC------CCCEEEEETTS-CEEEEEECSSTTCCSEEEEECTTSCEEEEEEC---
T ss_pred CCCCcEEEEEEEEeEe-eCCCEEEEeCCC-CEEEEEEccccCCCCEEEEECCCCCEEEEEEcccc
Confidence 4456666666656667 666788888777 55555 5554332111 1223777777777653
No 9
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=12.60 E-value=73 Score=23.86 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhhccH
Q 027357 15 ERTAALQLALDVVESE 30 (224)
Q Consensus 15 eR~rli~kgL~~A~Se 30 (224)
.=-++|+|||.|.+-|
T Consensus 48 aLVsllQKGL~Y~~~E 63 (90)
T 2xtc_A 48 ALISILQKGLQYVEAE 63 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3367999999999754
No 10
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=8.98 E-value=1.1e+02 Score=18.01 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=13.3
Q ss_pred hhccCchHHHHHHHHHhhh
Q 027357 7 KEYKNPSEERTAALQLALD 25 (224)
Q Consensus 7 re~~d~~qeR~rli~kgL~ 25 (224)
+|-.| +|+|.|-+.|-|+
T Consensus 8 keled-lqerlrklrkklr 25 (27)
T 3twe_A 8 KELED-LQERLRKLRKKLR 25 (27)
T ss_dssp HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhc
Confidence 34557 9999998887664
Done!