Query 027357
Match_columns 224
No_of_seqs 53 out of 55
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 14:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1umua_ b.87.1.1 (A:) UmuD' {E 77.5 3.3 0.00024 29.4 6.6 49 157-208 40-105 (105)
2 d1f39a_ b.87.1.1 (A:) lambda r 71.9 12 0.00091 25.6 9.2 72 132-212 5-99 (101)
3 d1jhfa2 b.87.1.1 (A:73-198) Le 69.3 4.8 0.00035 28.9 5.9 69 132-208 38-125 (126)
4 d2q4ma1 d.23.1.2 (A:24-212) Hy 14.9 1.8E+02 0.013 21.2 6.4 59 152-212 11-73 (189)
5 d1yzma1 a.2.19.1 (A:456-501) F 14.2 55 0.004 20.3 2.5 32 2-35 14-45 (46)
6 d2co7b1 b.1.11.1 (B:8-135) Per 11.0 74 0.0054 22.4 2.7 30 58-90 54-83 (128)
7 d1hnga1 b.1.1.1 (A:2-99) CD2, 9.3 1.4E+02 0.0099 19.3 3.5 53 131-186 11-65 (98)
8 d1p5va1 b.1.11.1 (A:7-147) Cha 8.9 96 0.007 22.2 2.7 29 58-89 57-85 (141)
9 d1znpa1 b.82.1.16 (A:4-143) Hy 8.1 1.3E+02 0.0098 21.9 3.3 41 182-224 97-138 (140)
10 d1i7na1 c.30.1.5 (A:113-214) S 8.1 73 0.0053 22.8 1.6 13 156-168 4-16 (102)
No 1
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=77.50 E-value=3.3 Score=29.37 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=32.8
Q ss_pred EEEEeCCCcccccCCcEEEEEcCCCeEEEee----cc-c------------ccccCccccceeEEEEEc
Q 027357 157 LVVADRSRKEVAVDDGFYLVVGDGGELKVER----GS-M------------LKERGVEESLGTVALVVR 208 (224)
Q Consensus 157 LvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~----G~-~------------l~e~~~~~~LG~VilvvR 208 (224)
++|+||+. ++ .+++.+++.-+| ++.+.+ |+ + +.+....++.|.|+-++|
T Consensus 40 lliVd~~~-~~-~~g~ivva~i~g-e~~vKrl~~~~~~~L~~~N~~y~~i~i~~~~~~~I~GvVv~viR 105 (105)
T d1umua_ 40 LLIVDSAI-TA-SHGDIVIAAVDG-EFTVKKLQLRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVK 105 (105)
T ss_dssp EEEEETTS-CC-CTTCEEEEEETT-EEEEEEEECSSSCEEECSSTTSCCEECCTTSCEEEEEEEEEEEC
T ss_pred EEEEEccc-cc-ccCcEEEEEECC-EEEEEEEEECCcEEEECCCCCCCCEEcCCCCCEEEEEEEEEEEC
Confidence 77899975 56 688888888777 777664 22 1 222235667787777766
No 2
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=71.89 E-value=12 Score=25.59 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=42.6
Q ss_pred eEEEEecCCCcC-------CCcCCCCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEee-----cc-c--------
Q 027357 132 GVVVAFSDARVL-------PWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVER-----GS-M-------- 190 (224)
Q Consensus 132 PVaI~~~~~~~L-------P~~~~~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~-----G~-~-------- 190 (224)
.+++-+..+. . |.-.++ =+|++|++. +. .++.|+++..+++++.+.+ |. +
T Consensus 5 ~F~l~V~GdS-M~~~~~~ep~i~~G------d~viVd~~~-~~-~~g~ivva~~~~~~~~vKr~~~~~~~~~L~s~N~~y 75 (101)
T d1f39a_ 5 AFWLEVEGNS-MTAPTGSKPSFPDG------MLILVDPEQ-AV-EPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQY 75 (101)
T ss_dssp CEEEECCSST-TCCCTTCSSCCCTT------CEEEEETTS-CC-CTTCEEEEECTTSCEEEEEEEEETTEEEEECSSTTS
T ss_pred EEEEEEeCCc-cCCCcccCCCcCCC------CEEEEEecC-cc-CCCCEEEEEECCCeEEEEEEEEcCCEEEEEECCCCC
Confidence 6777777776 3 222222 267789874 56 6777888766553555542 22 1
Q ss_pred --ccccCccccceeEEEEEcCCCC
Q 027357 191 --LKERGVEESLGTVALVVRPPKE 212 (224)
Q Consensus 191 --l~e~~~~~~LG~VilvvRPpk~ 212 (224)
+.-....+++|+|+-..+|-..
T Consensus 76 ~~i~~~~~~~IiG~Vv~s~~p~~~ 99 (101)
T d1f39a_ 76 PMIPCNESCSVVGKVIASQWPEET 99 (101)
T ss_dssp CCEECSTTCEEEEEEEEEECCGGG
T ss_pred CCCcCCCCcEEEEEEEEEECcHHH
Confidence 1112457889999887777653
No 3
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.29 E-value=4.8 Score=28.85 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=42.9
Q ss_pred eEEEEecCCCcCCCcCCCCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEee-----cc-c------------cc-
Q 027357 132 GVVVAFSDARVLPWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVER-----GS-M------------LK- 192 (224)
Q Consensus 132 PVaI~~~~~~~LP~~~~~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~~-----G~-~------------l~- 192 (224)
-+++-+..+.-.|.... . --+|++||+ .+. .++..|++.-+| ++.+.+ |+ + +.
T Consensus 38 ~f~lrV~GdSM~~~~i~----~-gd~viv~~~-~~~-~~G~ivv~~~~g-e~~vKrl~~~~~~~~L~s~N~~y~pi~~~~ 109 (126)
T d1jhfa2 38 DFLLRVSGMSMKDIGIM----D-GDLLAVHKT-QDV-RNGQVVVARIDD-EVTVKRLKKQGNKVELLPENSEFKPIVVDL 109 (126)
T ss_dssp CEEEECCSSTTGGGTCC----T-TCEEEEEEC-SCC-CTTSEEEEEETT-EEEEEEEEEETTEEEEECSSTTCCCEEEET
T ss_pred eEEEEEcCCcccCcccC----C-CEEEEEecc-ccc-cCCCEEEEEECC-EEEEEEEEEcCCEEEEecCCcCCCCeEccC
Confidence 57887777774465332 1 236677875 567 777888888777 777763 22 1 11
Q ss_pred ccCccccceeEEEEEc
Q 027357 193 ERGVEESLGTVALVVR 208 (224)
Q Consensus 193 e~~~~~~LG~VilvvR 208 (224)
+.....++|+|+=+.|
T Consensus 110 ~~~~~~IiG~Vv~vir 125 (126)
T d1jhfa2 110 RQQSFTIEGLAVGVIR 125 (126)
T ss_dssp TTSCEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEEC
Confidence 2234567788877766
No 4
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.87 E-value=1.8e+02 Score=21.20 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=29.4
Q ss_pred ccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEe-eccccccc---CccccceeEEEEEcCCCC
Q 027357 152 YEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVE-RGSMLKER---GVEESLGTVALVVRPPKE 212 (224)
Q Consensus 152 k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~-~G~~l~e~---~~~~~LG~VilvvRPpk~ 212 (224)
-++|+-+++-+..--+ ..|+|=+-+.+| ++.+. +|..+.-. -.--.=|+.++-+|.|..
T Consensus 11 ~~~~~~L~V~~K~~~~-~~~~f~V~D~~G-~~vf~V~g~~~~~~~~~~l~D~~G~~L~~i~~k~~ 73 (189)
T d2q4ma1 11 APYPIDMAIVRKMMSL-TDGNFVITDVNG-NLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV 73 (189)
T ss_dssp CSSCEEEEEECC------CCCEEEEETTS-CEEEEEECSBTTBTTEEEEECTTSCEEEEEEC---
T ss_pred cCCceEEEEEEeeeee-eCCceEEEeCCC-CEEEEEecccCCCCCeEEEECCCCCEEEEEEeecc
Confidence 4567766666655666 555555666777 77766 55432211 122245777777777764
No 5
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.21 E-value=55 Score=20.34 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=24.3
Q ss_pred ccchhhhccCchHHHHHHHHHhhhhhccHHHHHH
Q 027357 2 YYRQSKEYKNPSEERTAALQLALDVVESEDAKNV 35 (224)
Q Consensus 2 ~~r~are~~d~~qeR~rli~kgL~~A~Se~AR~~ 35 (224)
|-+|||+... ++| ...+++-|+--..+-.+++
T Consensus 14 yI~QAk~a~R-~dE-V~~Le~NLreLq~e~~~qq 45 (46)
T d1yzma1 14 FIRQAKAAGR-MDE-VRTLQENLRQLQDEYDQQQ 45 (46)
T ss_dssp HHHHHHHTTC-HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-hHH-HHHHHHHHHHHHHHHHhhc
Confidence 5689999999 888 7788888877666555543
No 6
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}
Probab=11.02 E-value=74 Score=22.38 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=22.9
Q ss_pred ccceEEEeecccccccceeEEeeeccCcccccc
Q 027357 58 VKVPVVRLKIGEVSEATTVVVLPVCRAEEKENN 90 (224)
Q Consensus 58 p~lpv~RLe~~Eva~~~~prllPV~g~~~l~~~ 90 (224)
..=|++||+.++ ..+.||+..-+.+|..++
T Consensus 54 vtPPl~rl~p~~---~q~vRI~~~~~~lp~drE 83 (128)
T d2co7b1 54 VMPPLFRLEANQ---QSQLRIVRTGGDMPTDRE 83 (128)
T ss_dssp EESSEEEECTTC---EEEEEEEECCCCCCSSSC
T ss_pred EeCceeEECCCC---ceEEEEEecCCCCCCCcE
Confidence 345899999888 578899988777775543
No 7
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.33 E-value=1.4e+02 Score=19.26 Aligned_cols=53 Identities=17% Similarity=0.431 Sum_probs=33.6
Q ss_pred ceEEEEecCCCcCCCcCC--CCcccceEEEEEeCCCcccccCCcEEEEEcCCCeEEEe
Q 027357 131 GGVVVAFSDARVLPWRAN--RWYYEEAILVVADRSRKEVAVDDGFYLVVGDGGELKVE 186 (224)
Q Consensus 131 ~PVaI~~~~~~~LP~~~~--~~~k~E~vLvV~DR~~~e~~~~d~yyLV~~~g~~L~l~ 186 (224)
+.|-+-|++-. .+.... .|.+.+..++...++...- ..++.+.+..+| +|.|.
T Consensus 11 ~sV~L~~~~~~-~~~~i~~I~W~~~~~~i~~~~~~~~~~-~~~~~~~~~~ng-SL~I~ 65 (98)
T d1hnga1 11 HGINLNIPNFQ-MTDDIDEVRWERGSTLVAEFKRKMKPF-LKSGAFEILANG-DLKIK 65 (98)
T ss_dssp SCEEECCTTCC-CCTTEEEEEEEETTEEEEEEETTSCCE-ESSTTEEECTTS-CEEES
T ss_pred CCEEEECCCCC-CccchheeeeeccccceeEEccCCccc-cCCCeEEECCCc-cEEEe
Confidence 36666665432 111221 4767777777777777666 566667777888 89888
No 8
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}
Probab=8.92 E-value=96 Score=22.23 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=21.7
Q ss_pred ccceEEEeecccccccceeEEeeeccCccccc
Q 027357 58 VKVPVVRLKIGEVSEATTVVVLPVCRAEEKEN 89 (224)
Q Consensus 58 p~lpv~RLe~~Eva~~~~prllPV~g~~~l~~ 89 (224)
.-=|++||+.++ ..+.||+..-..+|..+
T Consensus 57 vtPPl~rl~p~~---~~~lRI~~~~~~lP~Dr 85 (141)
T d1p5va1 57 VTPPLFRLDAKQ---QNSLRIAQAGGVFPRDK 85 (141)
T ss_dssp EESSEEEECTTC---EEEEEEEECSCCCCSSS
T ss_pred EcCCeEEECCCC---ceEEEEEecCCCCCCcc
Confidence 345899999887 67888988766666444
No 9
>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.14 E-value=1.3e+02 Score=21.91 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=25.9
Q ss_pred eEEEeecccccccCccccceeEEEEEcCCCCCCcc-ccccCCCC
Q 027357 182 ELKVERGSMLKERGVEESLGTVALVVRPPKEETDD-QIADEDWD 224 (224)
Q Consensus 182 ~L~l~~G~~l~e~~~~~~LG~VilvvRPpk~~~De-~~~~e~W~ 224 (224)
++.|.+|.|+..+..... .++=|+=.|..+|+| ++.+.+|.
T Consensus 97 q~vVp~g~W~aa~~~g~~--sLvsctVaPGF~f~dfel~~~~w~ 138 (140)
T d1znpa1 97 QVIVPANCWQSAESLGDF--TLVGCTVSPGFAFSSFVMAEPGWS 138 (140)
T ss_dssp EEEECTTCEEEEEESSSE--EEEEEEESSCCCGGGEEECCTTCC
T ss_pred eEEECCCeEEeeeECCCe--EEEEeEecCCccCccCEeCCCCCC
Confidence 445555667765422211 356677788888877 78888884
No 10
>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.05 E-value=73 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=11.8
Q ss_pred EEEEEeCCCcccc
Q 027357 156 ILVVADRSRKEVA 168 (224)
Q Consensus 156 vLvV~DR~~~e~~ 168 (224)
+|||||....+|.
T Consensus 4 ~LLVIDd~~tDW~ 16 (102)
T d1i7na1 4 VLLVVDEPHTDWA 16 (102)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEEcCCCCcHH
Confidence 7999999999994
Done!