Query 027360
Match_columns 224
No_of_seqs 129 out of 173
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06699 PIG-F: GPI biosynthes 100.0 1.8E-51 3.8E-56 352.7 15.2 168 40-209 14-188 (190)
2 KOG3144 Ethanolamine-P-transfe 100.0 5.8E-35 1.3E-39 248.8 11.0 130 81-211 59-193 (196)
3 PHA02132 hypothetical protein 77.6 5.6 0.00012 30.3 4.8 58 112-173 2-62 (86)
4 COG4575 ElaB Uncharacterized c 73.5 2.3 4.9E-05 34.2 1.8 22 183-208 81-102 (104)
5 TIGR00844 c_cpa1 na(+)/h(+) an 73.3 1.3E+02 0.0028 32.0 14.8 28 191-218 210-237 (810)
6 PRK10404 hypothetical protein; 55.0 5.9 0.00013 31.2 1.0 20 183-206 78-97 (101)
7 PF05684 DUF819: Protein of un 54.9 19 0.00041 34.3 4.5 106 79-201 20-128 (378)
8 PF13782 SpoVAB: Stage V sporu 48.5 14 0.00031 29.8 2.2 42 163-209 27-68 (110)
9 PRK02898 cobalt transport prot 44.8 47 0.001 26.5 4.6 22 116-137 4-25 (100)
10 PRK10381 LPS O-antigen length 43.7 21 0.00046 33.9 2.9 36 188-223 337-372 (377)
11 COG4589 Predicted CDP-diglycer 41.6 3.1E+02 0.0066 25.8 12.0 126 88-223 113-269 (303)
12 PF05957 DUF883: Bacterial pro 39.1 12 0.00025 28.3 0.4 21 183-207 71-91 (94)
13 PF06946 Phage_holin_5: Phage 36.2 41 0.00089 26.5 3.0 57 161-224 35-91 (93)
14 PF05915 DUF872: Eukaryotic pr 35.8 56 0.0012 26.3 3.8 64 80-145 40-103 (115)
15 TIGR02230 ATPase_gene1 F0F1-AT 35.6 52 0.0011 26.1 3.5 36 163-207 56-91 (100)
16 PF05767 Pox_A14: Poxvirus vir 31.8 2.2E+02 0.0048 22.5 6.4 49 47-96 9-57 (92)
17 PF01102 Glycophorin_A: Glycop 31.6 38 0.00083 27.7 2.3 25 194-220 70-94 (122)
18 COG3336 Predicted membrane pro 31.6 4.5E+02 0.0098 24.8 9.7 48 103-150 61-109 (299)
19 MTH00213 ND6 NADH dehydrogenas 31.4 81 0.0017 28.7 4.4 88 86-175 25-116 (239)
20 PF03729 DUF308: Short repeat 29.2 1.6E+02 0.0035 19.9 4.8 26 71-96 44-69 (72)
21 KOG4326 Mitochondrial F1F0-ATP 28.3 95 0.002 23.7 3.7 29 8-38 2-30 (81)
22 PF01384 PHO4: Phosphate trans 27.6 81 0.0018 29.3 4.0 46 164-209 96-146 (326)
23 TIGR00802 nico high-affinity n 27.5 16 0.00035 34.0 -0.7 14 183-196 140-153 (280)
24 COG1346 LrgB Putative effector 26.6 1.9E+02 0.0041 26.3 6.0 18 192-209 92-109 (230)
25 PF13937 DUF4212: Domain of un 26.4 1.8E+02 0.0039 22.1 5.0 62 76-137 2-67 (81)
26 PRK03612 spermidine synthase; 26.2 6.4E+02 0.014 24.9 12.3 45 133-177 121-168 (521)
27 COG3447 Predicted integral mem 26.0 5.7E+02 0.012 24.2 12.0 80 89-176 134-215 (308)
28 PF04246 RseC_MucC: Positive r 25.6 67 0.0014 25.6 2.7 48 162-222 77-124 (135)
29 TIGR03789 pdsO proteobacterial 25.2 42 0.00092 30.3 1.6 14 195-208 61-74 (239)
30 PF09527 ATPase_gene1: Putativ 25.0 46 0.00099 22.7 1.4 33 163-204 14-46 (55)
31 PHA03048 IMV membrane protein; 24.2 3.2E+02 0.007 21.6 6.1 46 49-96 11-56 (93)
32 PRK05812 secD preprotein trans 23.1 4.5E+02 0.0099 26.2 8.4 29 185-213 455-483 (498)
33 PF01102 Glycophorin_A: Glycop 22.8 67 0.0014 26.3 2.2 34 189-223 61-94 (122)
34 PF09678 Caa3_CtaG: Cytochrome 22.6 3.7E+02 0.0079 23.7 7.0 42 102-144 35-78 (244)
35 PRK12911 bifunctional preprote 22.6 4.3E+02 0.0093 30.0 8.6 29 184-212 1030-1058(1403)
36 COG4597 BatB ABC-type amino ac 22.6 3.8E+02 0.0083 25.9 7.4 32 76-113 217-248 (397)
37 PRK09776 putative diguanylate 22.3 8.8E+02 0.019 25.1 13.3 22 115-136 137-158 (1092)
38 COG4603 ABC-type uncharacteriz 21.9 4.9E+02 0.011 24.9 8.1 51 153-209 85-135 (356)
39 COG1108 ZnuB ABC-type Mn2+/Zn2 21.8 2.4E+02 0.0051 26.0 5.8 41 164-224 52-92 (274)
40 PRK10862 SoxR reducing system 21.6 92 0.002 26.0 2.9 25 197-221 106-130 (154)
41 PF13858 DUF4199: Protein of u 21.6 4.2E+02 0.0092 21.1 8.5 26 78-103 61-86 (163)
42 PF13807 GNVR: G-rich domain o 21.5 1.9E+02 0.0042 21.0 4.3 30 8-37 48-77 (82)
43 PRK13022 secF preprotein trans 20.2 6.7E+02 0.014 22.9 10.0 57 163-219 230-286 (289)
No 1
>PF06699 PIG-F: GPI biosynthesis protein family Pig-F; InterPro: IPR009580 Glycosylphosphatidylinositol anchor biosynthesis protein Pig-F is involved in glycosylphosphatidylinositol (GPI) anchor biosynthesis [, , ]. ; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.8e-51 Score=352.73 Aligned_cols=168 Identities=34% Similarity=0.642 Sum_probs=148.8
Q ss_pred hcccccccChhHHHHHHHHHHHHHHHHhhHhhhcC------CCCcchHHHHHHhHhhhhHHHHHHHHHHHHhCCCccccc
Q 027360 40 FYSISLISNPSRTLRLIWVTMCPLVILFYSCFRKN------PEKCSYLKAVIRGVLALPIGALVNALGAIALGAPVGIQY 113 (224)
Q Consensus 40 ~~~~~Lv~dP~~tl~~~~~~~~piv~~~~s~~r~~------~k~~~~~~a~~~~ll~~~l~a~l~~~~~VLfGAP~~~~~ 113 (224)
.++.+|++||+.+|... ..+..+++++|.+++.+ +||++...++.+.++++++++.++|+++|+||||++ ++
T Consensus 14 ~~~~~l~~~~~~~L~~~-l~~~~~~q~~Y~~l~~~~~~~~~~kk~~~~~~~~~~~l~~~l~~~~~~~~~VLfGAP~~-~~ 91 (190)
T PF06699_consen 14 RFSAGLVSDPVSTLLKL-LPVLAVLQVVYSYLCLPAATSSGNKKNNPLLAILSLLLSLLLSTPVFHVILVLFGAPLL-SH 91 (190)
T ss_pred HHHhhccCCHHHHHHHH-HHHHHHHHHHHHheecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHeecChhHH-Hh
Confidence 45678999999999974 44444555666665432 224557788999999999999999999999999994 78
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhcCCChHHHHHHHhccCCCc-chhhhhhhhhhhhhhhhhhcccccCCCCCCCCCccCch
Q 027360 114 FPKTVNWSLLMSLFTFVPAASVFGSSWEDWRRIFAHTKPNA-SVDYMICLPAHGAVIGAWFGAWPMPLDWERPWQEWPIC 192 (224)
Q Consensus 114 ~~~T~llal~lS~lt~~P~~~~~g~~~~~w~~vf~~~~p~~-~~e~~i~~~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~ 192 (224)
.+||++||+|||+++++|+.+++|.|.++|+|+|+..++.+ ..|+.++++++|+++|||+||+|||||||||||+||||
T Consensus 92 ~~~T~lla~~ls~lt~~P~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~~GaWlGa~pIPLDWDRpWQ~WPi~ 171 (190)
T PF06699_consen 92 VEETFLLALHLSLLTVFPLAYVFGCDFQVWKRVFSLERPLDEIFENSLLYPAIGAVLGAWLGAVPIPLDWDRPWQAWPIT 171 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHcceeccCCCCCccccCChH
Confidence 99999999999999999999999999999999999999877 78899999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHHH
Q 027360 193 VSYGAMAGYLITMVLSF 209 (224)
Q Consensus 193 ~~~Ga~~G~~lG~~~s~ 209 (224)
|++|+++||++|++++.
T Consensus 172 ~~~Ga~~G~~~G~~~~~ 188 (190)
T PF06699_consen 172 CVVGAYLGYFVGSLIGS 188 (190)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999875
No 2
>KOG3144 consensus Ethanolamine-P-transferase GPI11/PIG-F, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-35 Score=248.82 Aligned_cols=130 Identities=25% Similarity=0.448 Sum_probs=114.7
Q ss_pred HHHHHHhHhhhhHHHHHHHH-HHHHhCCCccccchhHHHHHHHHHHHHHHhhhHhhcCC----ChHHHHHHHhccCCCcc
Q 027360 81 LKAVIRGVLALPIGALVNAL-GAIALGAPVGIQYFPKTVNWSLLMSLFTFVPAASVFGS----SWEDWRRIFAHTKPNAS 155 (224)
Q Consensus 81 ~~a~~~~ll~~~l~a~l~~~-~~VLfGAP~~~~~~~~T~llal~lS~lt~~P~~~~~g~----~~~~w~~vf~~~~p~~~ 155 (224)
.+....++....++.++..| ++|+||||+. +...+|+++|+.||.++++|+++++|. +.+.|.|+++.......
T Consensus 59 p~~~L~g~~~~~v~~L~~~F~i~vl~GAPli-~~~~~T~vlAl~lT~~t~~PtvfLl~~~~~~~~~~~~~f~s~~~~~si 137 (196)
T KOG3144|consen 59 PRFSLVGFAPTFVAYLLLQFNICVLYGAPLI-KDNYSTFVLALGLTFLTVFPTVFLLGSFGTWNLELWLRFLSYPGVTSI 137 (196)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHHhccHHHhhcccchhhHHHHHHHHhcCCCCcH
Confidence 34444466667777776666 8999999995 778999999999999999999999998 56789999998777777
Q ss_pred hhhhhhhhhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHHHH
Q 027360 156 VDYMICLPAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSFVL 211 (224)
Q Consensus 156 ~e~~i~~~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~~~ 211 (224)
.|.....+++|.++|||+||+|||||||||||+||||+++||++|+.+|.+++...
T Consensus 138 ~e~~~k~~si~~~vGAW~ga~viPLDWdR~WQ~wPIp~vvGa~lGa~~g~ii~~~~ 193 (196)
T KOG3144|consen 138 FEGLLKKNSIFIFVGAWAGAVVIPLDWDRDWQAWPIPIVVGAFLGAAVGYIIGAYI 193 (196)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCCCchhhCCchHHHHHHHHHHHHHHHhhcc
Confidence 78888999999999999999999999999999999999999999999999988543
No 3
>PHA02132 hypothetical protein
Probab=77.61 E-value=5.6 Score=30.29 Aligned_cols=58 Identities=17% Similarity=0.492 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHHHHHHHhhhHhhcCCCh-HHHHHHHhccCCCcch--hhhhhhhhhhhhhhhhh
Q 027360 112 QYFPKTVNWSLLMSLFTFVPAASVFGSSW-EDWRRIFAHTKPNASV--DYMICLPAHGAVIGAWF 173 (224)
Q Consensus 112 ~~~~~T~llal~lS~lt~~P~~~~~g~~~-~~w~~vf~~~~p~~~~--e~~i~~~~~g~vlGaWl 173 (224)
+.+.|-+..|..-|..+..--+..+|..+ ++|++ .+|.+.. .........|++-|||+
T Consensus 2 ~~lfelf~~svqys~ia~~vyvl~hg~affdewr~----~~pdsk~pa~sl~~vqiyg~ia~awl 62 (86)
T PHA02132 2 NLLFELFILSVQYSIIAVMVYVLIHGFAFFDEWRQ----KRPDSKMPARSLCAVQVYGMIAGAWL 62 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHc----CCCCccCchhhhhhhHHHHHHHHHHH
Confidence 34567777888888777777777788764 56887 4554333 33334567899999998
No 4
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=73.50 E-value=2.3 Score=34.15 Aligned_cols=22 Identities=45% Similarity=0.844 Sum_probs=15.6
Q ss_pred CCCCCccCchhhcchhhHHHHHHHHH
Q 027360 183 ERPWQEWPICVSYGAMAGYLITMVLS 208 (224)
Q Consensus 183 DRpWQ~WPI~~~~Ga~~G~~lG~~~s 208 (224)
|.|||. +-+||-+|.++|.++|
T Consensus 81 e~PWq~----VGvaAaVGlllGlLls 102 (104)
T COG4575 81 ENPWQG----VGVAAAVGLLLGLLLS 102 (104)
T ss_pred cCCchH----HHHHHHHHHHHHHHHh
Confidence 999994 6666777777775543
No 5
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=73.28 E-value=1.3e+02 Score=32.00 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=18.5
Q ss_pred chhhcchhhHHHHHHHHHHHHHHHhcCc
Q 027360 191 ICVSYGAMAGYLITMVLSFVLVLARGGQ 218 (224)
Q Consensus 191 I~~~~Ga~~G~~lG~~~s~~~~~~~~~~ 218 (224)
.-+..|..+|.++|.+.+......++|+
T Consensus 210 ~~i~~GiliG~vvG~l~~~Ll~~l~rr~ 237 (810)
T TIGR00844 210 WECIFGSILGCIIGYCGRKAIRFAEGKN 237 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566677888888877776665555443
No 6
>PRK10404 hypothetical protein; Provisional
Probab=54.97 E-value=5.9 Score=31.21 Aligned_cols=20 Identities=35% Similarity=0.905 Sum_probs=13.5
Q ss_pred CCCCCccCchhhcchhhHHHHHHH
Q 027360 183 ERPWQEWPICVSYGAMAGYLITMV 206 (224)
Q Consensus 183 DRpWQ~WPI~~~~Ga~~G~~lG~~ 206 (224)
|.||| ++-+++-+|.++|.+
T Consensus 78 e~Pw~----avGiaagvGlllG~L 97 (101)
T PRK10404 78 EKPWQ----GIGVGAAVGLVLGLL 97 (101)
T ss_pred hCcHH----HHHHHHHHHHHHHHH
Confidence 79999 455566666666644
No 7
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=54.93 E-value=19 Score=34.30 Aligned_cols=106 Identities=22% Similarity=0.225 Sum_probs=59.3
Q ss_pred chHHHHHHhHhhhhHHHHHHHHHHH--HhCCCccccchhHHHHHHHHHHHHHHhhhHhhcCCChHHHHHHHhccCCCcch
Q 027360 79 SYLKAVIRGVLALPIGALVNALGAI--ALGAPVGIQYFPKTVNWSLLMSLFTFVPAASVFGSSWEDWRRIFAHTKPNASV 156 (224)
Q Consensus 79 ~~~~a~~~~ll~~~l~a~l~~~~~V--LfGAP~~~~~~~~T~llal~lS~lt~~P~~~~~g~~~~~w~~vf~~~~p~~~~ 156 (224)
.+++.+...+++..+++++..++++ =..+|+ ++ ...|++.-+.+ ..+++++|.+++.|.-. ..
T Consensus 20 ~~f~~l~~~vl~~~~~~~lsnlgli~~p~~s~~-y~-~v~~~~vPlai-------~LlLl~~Dlr~i~~~g~------~~ 84 (378)
T PF05684_consen 20 GFFKYLPGAVLCYLLGMLLSNLGLIDSPASSPV-YD-FVWTYLVPLAI-------PLLLLSADLRRILRLGG------RL 84 (378)
T ss_pred hhHhhcCHHHHHHHHHHHHHHCCCcCCCCcchH-HH-HHHHHHHHHHH-------HHHHHHccHHHHHHhhH------HH
Confidence 4667777788899999998888877 333443 12 23444333333 23677888766555322 12
Q ss_pred hhhhhhhhhhhhhhhhhcccccCCC-CCCCCCccCchhhcchhhHH
Q 027360 157 DYMICLPAHGAVIGAWFGAWPMPLD-WERPWQEWPICVSYGAMAGY 201 (224)
Q Consensus 157 e~~i~~~~~g~vlGaWlGA~pIPLD-WDRpWQ~WPI~~~~Ga~~G~ 201 (224)
--.....++|+++|+=++-.-.+-- =|.-||.- ....|.|+|.
T Consensus 85 l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~a--g~l~gsyiGG 128 (378)
T PF05684_consen 85 LLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIA--GMLAGSYIGG 128 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH--HHHHhcccCc
Confidence 2233456777777776655544422 14456543 4445555554
No 8
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=48.52 E-value=14 Score=29.79 Aligned_cols=42 Identities=17% Similarity=0.357 Sum_probs=31.0
Q ss_pred hhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHH
Q 027360 163 PAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSF 209 (224)
Q Consensus 163 ~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~ 209 (224)
-..|+++|.|..-..+++-+ ...+..++|-..|-++|++...
T Consensus 27 iilG~~~gn~~~~~~~~~~~-----~~~~~~i~GL~~GiFvG~la~A 68 (110)
T PF13782_consen 27 IILGAILGNIFSLFEISIPL-----GPILLIIFGLFAGIFVGCLAAA 68 (110)
T ss_pred HHHHHHHHHHHHHHcccccc-----cHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999887665555 3456777888888888877653
No 9
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=44.80 E-value=47 Score=26.49 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhcC
Q 027360 116 KTVNWSLLMSLFTFVPAASVFG 137 (224)
Q Consensus 116 ~T~llal~lS~lt~~P~~~~~g 137 (224)
++.++-+..-+++++|++..-+
T Consensus 4 ~~~~L~~~vi~l~~~pl~~~~~ 25 (100)
T PRK02898 4 KNLLLLLLVILLAVLPLFIYSG 25 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 4566666677888999987554
No 10
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=43.66 E-value=21 Score=33.94 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=28.3
Q ss_pred ccCchhhcchhhHHHHHHHHHHHHHHHhcCccCCCC
Q 027360 188 EWPICVSYGAMAGYLITMVLSFVLVLARGGQQHPKA 223 (224)
Q Consensus 188 ~WPI~~~~Ga~~G~~lG~~~s~~~~~~~~~~~~~k~ 223 (224)
+=.+-++.|+++|.++|..+.++...+|+|+.+.|.
T Consensus 337 kr~lIlvl~~llG~~lg~~~vL~r~~~r~~~~~~~~ 372 (377)
T PRK10381 337 GKALIVILAALIGGMLACGFVLLRHAMRSRKQDLML 372 (377)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334568889999999999888888888888776654
No 11
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=41.55 E-value=3.1e+02 Score=25.80 Aligned_cols=126 Identities=19% Similarity=0.325 Sum_probs=62.7
Q ss_pred HhhhhHHHHHH-HHHHHHhCCCccccchhHHHHHHHHHHHHHHhhhHhhcCCC---h---------------------HH
Q 027360 88 VLALPIGALVN-ALGAIALGAPVGIQYFPKTVNWSLLMSLFTFVPAASVFGSS---W---------------------ED 142 (224)
Q Consensus 88 ll~~~l~a~l~-~~~~VLfGAP~~~~~~~~T~llal~lS~lt~~P~~~~~g~~---~---------------------~~ 142 (224)
+.-.|+-.+++ ....+|.|.+=.+-+-..-..|+.+++++...-..+.+-.| . -.
T Consensus 113 ~ifipvY~fL~Lp~l~~L~gdt~gFl~~~s~i~wg~mltvfcish~~~lltL~~~~~~~~~ll~iflli~~q~nDV~QYv 192 (303)
T COG4589 113 IIFIPVYGFLILPILMVLVGDTSGFLHRVSAIQWGWMLTVFCISHAAYLLTLDITNFQGGALLVIFLLILTELNDVAQYV 192 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHhHHHHHHHHHHHHHHHhhHHHhhCCCCCcCccchHHHHHHHHHHHHHHHHHH
Confidence 33444444433 33467777773211112336788888888766555555444 1 13
Q ss_pred HHHHHhccC------CCcchhhhhhhhhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHHHHHHHhc
Q 027360 143 WRRIFAHTK------PNASVDYMICLPAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSFVLVLARG 216 (224)
Q Consensus 143 w~~vf~~~~------p~~~~e~~i~~~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~~~~~~~~ 216 (224)
|-+.|+..| |+.+.|..+=....-+..|+-++ +--|+|| ||+-=..+.+| ..|.+-|.+ .-..|
T Consensus 193 wGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~-~lTp~~~---lqa~~~~~~I~-l~GF~Gdlv-----mSaiK 262 (303)
T COG4589 193 WGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLTPLNT---LQALLAGLLIG-LSGFCGDLV-----MSAIK 262 (303)
T ss_pred HhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH-HhCCCcH---HHHHHHHHHHH-HHHhhhHHH-----HHHHH
Confidence 666666643 66777765433222333444444 4467764 45432222222 223332222 33457
Q ss_pred CccCCCC
Q 027360 217 GQQHPKA 223 (224)
Q Consensus 217 ~~~~~k~ 223 (224)
|+++.|.
T Consensus 263 Rd~gvKD 269 (303)
T COG4589 263 RDVGVKD 269 (303)
T ss_pred hhcCCCc
Confidence 7777764
No 12
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=39.06 E-value=12 Score=28.33 Aligned_cols=21 Identities=43% Similarity=0.907 Sum_probs=13.1
Q ss_pred CCCCCccCchhhcchhhHHHHHHHH
Q 027360 183 ERPWQEWPICVSYGAMAGYLITMVL 207 (224)
Q Consensus 183 DRpWQ~WPI~~~~Ga~~G~~lG~~~ 207 (224)
|+|||. +.+++-+|.++|.++
T Consensus 71 e~P~~s----vgiAagvG~llG~Ll 91 (94)
T PF05957_consen 71 ENPWQS----VGIAAGVGFLLGLLL 91 (94)
T ss_pred HChHHH----HHHHHHHHHHHHHHH
Confidence 788886 444555666666443
No 13
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=36.22 E-value=41 Score=26.53 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=37.2
Q ss_pred hhhhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHHHHHHHhcCccCCCCC
Q 027360 161 CLPAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSFVLVLARGGQQHPKAD 224 (224)
Q Consensus 161 ~~~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~~~~~~~~~~~~~k~~ 224 (224)
.+|.+..++|.-+|++..++.=|-+ ....+..|.+.|.-.+...=..-+|+.++-||
T Consensus 35 ~iPlIs~viGilLG~~~~~~~~~~~-------l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~ 91 (93)
T PF06946_consen 35 WIPLISVVIGILLGAAAYPLTGDGN-------LALMAWAGGLAGLAATGLFEQFTNRSKKYGED 91 (93)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCCcc-------HHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcC
Confidence 3688889999999999988875442 23334556666666655544444555555554
No 14
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=35.81 E-value=56 Score=26.34 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=42.1
Q ss_pred hHHHHHHhHhhhhHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHhhhHhhcCCChHHHHH
Q 027360 80 YLKAVIRGVLALPIGALVNALGAIALGAPVGIQYFPKTVNWSLLMSLFTFVPAASVFGSSWEDWRR 145 (224)
Q Consensus 80 ~~~a~~~~ll~~~l~a~l~~~~~VLfGAP~~~~~~~~T~llal~lS~lt~~P~~~~~g~~~~~w~~ 145 (224)
-+|++.-++.-+.+|+++..++++++=.++- +...+ ..--+.+..+++.|-+|..-.-.-.|+.
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~-~~~~~-~~~llilG~L~fIPG~Y~~~i~y~a~rg 103 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHID-GDRDR-GWALLILGILCFIPGFYHTRIAYYAWRG 103 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcc-cchHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 3777777777778888887787777655653 33233 3355667889999998876554444443
No 15
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=35.65 E-value=52 Score=26.09 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=24.7
Q ss_pred hhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHH
Q 027360 163 PAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVL 207 (224)
Q Consensus 163 ~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~ 207 (224)
..+|..+|=|+ |+-|..=|.=.+.+.++|-++|..-
T Consensus 56 il~G~~lG~WL---------D~~~~t~~~~tl~~lllGv~~G~~n 91 (100)
T TIGR02230 56 TLLGVAVGIWL---------DRHYPSPFSWTLTMLIVGVVIGCLN 91 (100)
T ss_pred HHHHHHHHHHH---------HhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 45678889999 9988874433444666677777555
No 16
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=31.81 E-value=2.2e+02 Score=22.48 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=23.8
Q ss_pred cChhHHHHHHHHHHHHHHHHhhHhhhcCCCCcchHHHHHHhHhhhhHHHH
Q 027360 47 SNPSRTLRLIWVTMCPLVILFYSCFRKNPEKCSYLKAVIRGVLALPIGAL 96 (224)
Q Consensus 47 ~dP~~tl~~~~~~~~piv~~~~s~~r~~~k~~~~~~a~~~~ll~~~l~a~ 96 (224)
..++..+....+....-++..+--+-|+++...+..+.. +++++.+|++
T Consensus 9 n~~S~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRal-Sii~FI~gii 57 (92)
T PF05767_consen 9 NYFSGVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRAL-SIICFILGII 57 (92)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHH-HHHHHHHHHH
Confidence 334444444455555555555544556665555343333 3345555543
No 17
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.64 E-value=38 Score=27.71 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=9.3
Q ss_pred hcchhhHHHHHHHHHHHHHHHhcCccC
Q 027360 194 SYGAMAGYLITMVLSFVLVLARGGQQH 220 (224)
Q Consensus 194 ~~Ga~~G~~lG~~~s~~~~~~~~~~~~ 220 (224)
++|.++|- +|.++.+.| +.|++|++
T Consensus 70 i~gv~aGv-Ig~Illi~y-~irR~~Kk 94 (122)
T PF01102_consen 70 IFGVMAGV-IGIILLISY-CIRRLRKK 94 (122)
T ss_dssp HHHHHHHH-HHHHHHHHH-HHHHHS--
T ss_pred hHHHHHHH-HHHHHHHHH-HHHHHhcc
Confidence 34444443 344443333 33444443
No 18
>COG3336 Predicted membrane protein [Function unknown]
Probab=31.57 E-value=4.5e+02 Score=24.84 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=34.5
Q ss_pred HHhCCCcc-ccchhHHHHHHHHHHHHHHhhhHhhcCCChHHHHHHHhcc
Q 027360 103 IALGAPVG-IQYFPKTVNWSLLMSLFTFVPAASVFGSSWEDWRRIFAHT 150 (224)
Q Consensus 103 VLfGAP~~-~~~~~~T~llal~lS~lt~~P~~~~~g~~~~~w~~vf~~~ 150 (224)
...|-|+- ..+..-|++.+-|+-+--+.|...++|.+...+.+.+...
T Consensus 61 ~a~~Spv~~~g~~mfs~HMa~hm~L~mvappLlVLg~P~~l~l~~l~~~ 109 (299)
T COG3336 61 GAVGSPVRAYGHAMFSLHMAEHMLLMMVAPPLLVLGAPVTLALRALPPL 109 (299)
T ss_pred HHhCCchhhhccccHHHHHHHHHHHHHHHHHHHHHcchHHHHHHhccCC
Confidence 34566762 2233457888999989999999999999987676665543
No 19
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=31.40 E-value=81 Score=28.68 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=36.7
Q ss_pred HhHhhhhHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHhhhHhhcCCChHHHHHHHhcc--CCCcchh--hhhh
Q 027360 86 RGVLALPIGALVNALGAIALGAPVGIQYFPKTVNWSLLMSLFTFVPAASVFGSSWEDWRRIFAHT--KPNASVD--YMIC 161 (224)
Q Consensus 86 ~~ll~~~l~a~l~~~~~VLfGAP~~~~~~~~T~llal~lS~lt~~P~~~~~g~~~~~w~~vf~~~--~p~~~~e--~~i~ 161 (224)
+.++.+.+.-+-.....+++||++. - ..+-+.-+--+.++..+-...+=.-+...|..-+... ++++..+ ..-.
T Consensus 25 hSaL~LIlvFi~iAgLyilLgAeFL-A-~iQILVYVGAIaVLFLFVIMLLn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (239)
T MTH00213 25 ASVFWLILTFIGSSGLFIVLGMEFL-G-LIFLIVYVGAICIIFLFVIMMIPGGAKGFKPTKGNKKEKERKKGEETGRIGA 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHH-H-HHHHHHHHhHHHHHHHHHHHhhcccccccccccCCCccccccCCCCCCccCC
Confidence 3344443333333445677888884 2 2333333333333333332222222323343333221 1111111 1223
Q ss_pred hhhhhhhhhhhhcc
Q 027360 162 LPAHGAVIGAWFGA 175 (224)
Q Consensus 162 ~~~~g~vlGaWlGA 175 (224)
.|++|-++||-+||
T Consensus 103 ~paig~ligail~a 116 (239)
T MTH00213 103 PPAIGILIGAILAA 116 (239)
T ss_pred CchHHHHHHHHHHH
Confidence 46777777776664
No 20
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=29.15 E-value=1.6e+02 Score=19.88 Aligned_cols=26 Identities=19% Similarity=0.560 Sum_probs=15.1
Q ss_pred hhcCCCCcchHHHHHHhHhhhhHHHH
Q 027360 71 FRKNPEKCSYLKAVIRGVLALPIGAL 96 (224)
Q Consensus 71 ~r~~~k~~~~~~a~~~~ll~~~l~a~ 96 (224)
++++++.......+..+++.+.+|.+
T Consensus 44 ~~~~~~~~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 44 FRRRKGSKGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HhccccchhhHHHHHHHHHHHHHHHH
Confidence 34333334555567777777777654
No 21
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=28.33 E-value=95 Score=23.74 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHhh
Q 027360 8 ENPSQSVSPMQTFFIHLICGVGLAVGLWVAH 38 (224)
Q Consensus 8 ~~~~~~is~~~~~~~~~~~~~~l~~~~~~~~ 38 (224)
++||+++||.--+--|+...+|.+ ++++|
T Consensus 2 ~p~pV~vSPLIkfGRysaL~lGva--YGa~r 30 (81)
T KOG4326|consen 2 QPPPVTVSPLIKFGRYSALSLGVA--YGAFR 30 (81)
T ss_pred CCCCeeecHHHHhhHHHHHHHHHH--HhHHH
Confidence 468999999999999999988864 55555
No 22
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=27.58 E-value=81 Score=29.31 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=30.1
Q ss_pred hhhhhhhhhhccc-ccCCCCCC-CC---CccCchhhcchhhHHHHHHHHHH
Q 027360 164 AHGAVIGAWFGAW-PMPLDWER-PW---QEWPICVSYGAMAGYLITMVLSF 209 (224)
Q Consensus 164 ~~g~vlGaWlGA~-pIPLDWDR-pW---Q~WPI~~~~Ga~~G~~lG~~~s~ 209 (224)
.+|+++|+-+..- .-.+||+. =+ -.|=++.+.|..+++++..++..
T Consensus 96 lvGal~G~~l~~~g~~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~~ 146 (326)
T PF01384_consen 96 LVGALIGAGLASGGFSAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIRR 146 (326)
T ss_pred HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776555 35677772 11 12777888888888888766644
No 23
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=27.45 E-value=16 Score=33.97 Aligned_cols=14 Identities=21% Similarity=0.926 Sum_probs=13.2
Q ss_pred CCCCCccCchhhcc
Q 027360 183 ERPWQEWPICVSYG 196 (224)
Q Consensus 183 DRpWQ~WPI~~~~G 196 (224)
|||||.+|+..+.|
T Consensus 140 ~~pw~mypvG~LFG 153 (280)
T TIGR00802 140 TKSWHMYPVGFLFG 153 (280)
T ss_pred cCchHHHHHHHHHH
Confidence 89999999999887
No 24
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=26.64 E-value=1.9e+02 Score=26.28 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=9.2
Q ss_pred hhhcchhhHHHHHHHHHH
Q 027360 192 CVSYGAMAGYLITMVLSF 209 (224)
Q Consensus 192 ~~~~Ga~~G~~lG~~~s~ 209 (224)
+++.|..+|.++|...+.
T Consensus 92 ~I~~g~~vGs~~ai~s~~ 109 (230)
T COG1346 92 PILAGVLVGSVVAIISGV 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 25
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=26.42 E-value=1.8e+02 Score=22.13 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=36.0
Q ss_pred CCcchHHHHHHhHhhhhHHHHHHHHHH-HHhCCCcc---ccchhHHHHHHHHHHHHHHhhhHhhcC
Q 027360 76 EKCSYLKAVIRGVLALPIGALVNALGA-IALGAPVG---IQYFPKTVNWSLLMSLFTFVPAASVFG 137 (224)
Q Consensus 76 k~~~~~~a~~~~ll~~~l~a~l~~~~~-VLfGAP~~---~~~~~~T~llal~lS~lt~~P~~~~~g 137 (224)
+++.++++..|.+..+.+.=++..+++ ++|-.++- .--++-.+-++..-|.++++-++.++.
T Consensus 2 ~~~~yWr~n~rl~~~lL~iW~vvsfg~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi~~Ya 67 (81)
T PF13937_consen 2 PARAYWRKNLRLIAILLAIWFVVSFGVGILFADELNQITFGGFPLGFWFAAQGSIIVFVILIFVYA 67 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeCCCChHHHHHHHhHHHHHHHHHHHHH
Confidence 456788887777665555444444444 44433331 001233466888888888877776653
No 26
>PRK03612 spermidine synthase; Provisional
Probab=26.19 E-value=6.4e+02 Score=24.86 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=26.2
Q ss_pred HhhcCCChHHHHHHHhccC---CCcchhhhhhhhhhhhhhhhhhcccc
Q 027360 133 ASVFGSSWEDWRRIFAHTK---PNASVDYMICLPAHGAVIGAWFGAWP 177 (224)
Q Consensus 133 ~~~~g~~~~~w~~vf~~~~---p~~~~e~~i~~~~~g~vlGaWlGA~p 177 (224)
....|....--.++..... ......+....+.+|+++|+-+..+.
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 4556665554444444321 33445556667888888888775554
No 27
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=26.01 E-value=5.7e+02 Score=24.22 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHHHHhCCCccccc--hhHHHHHHHHHHHHHHhhhHhhcCCChHHHHHHHhccCCCcchhhhhhhhhhh
Q 027360 89 LALPIGALVNALGAIALGAPVGIQY--FPKTVNWSLLMSLFTFVPAASVFGSSWEDWRRIFAHTKPNASVDYMICLPAHG 166 (224)
Q Consensus 89 l~~~l~a~l~~~~~VLfGAP~~~~~--~~~T~llal~lS~lt~~P~~~~~g~~~~~w~~vf~~~~p~~~~e~~i~~~~~g 166 (224)
++-.+++++-.+..+.||.|. -++ ..-|+.++=-+..+++.|+......++..-.|. ++...+..... .+
T Consensus 134 v~p~l~Aiig~~lL~~~g~~~-~~~~~~~~~WwlgdA~giL~~aPl~i~~~~~~~~~~~~-----~~~~l~ea~vl--~~ 205 (308)
T COG3447 134 VPPLLGAIIGSVLLVVLGTPG-DDFSEAWFTWWLGDAIGILALAPLGIVIRPNWLRRHRL-----LRLQLVEALVL--AI 205 (308)
T ss_pred cchhHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhHHhhh-----hHhHHHHHHHH--HH
Confidence 344445555566678899993 122 234567777888999999998888765432222 22233333222 23
Q ss_pred hhhhhhhccc
Q 027360 167 AVIGAWFGAW 176 (224)
Q Consensus 167 ~vlGaWlGA~ 176 (224)
+....|+-..
T Consensus 206 ~L~ls~~l~~ 215 (308)
T COG3447 206 TLLLSWLLSL 215 (308)
T ss_pred HHHHHHHHHH
Confidence 4777887666
No 28
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.60 E-value=67 Score=25.62 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=27.2
Q ss_pred hhhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHHHHHHHhcCccCCC
Q 027360 162 LPAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSFVLVLARGGQQHPK 222 (224)
Q Consensus 162 ~~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~~~~~~~~~~~~~k 222 (224)
+|.++-++|+.+|..--+. -..+.+|.++|..++..+...+.|+.+.|
T Consensus 77 lPll~li~g~~l~~~~~~~-------------e~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 124 (135)
T PF04246_consen 77 LPLLALIAGAVLGSYLGGS-------------ELWAILGGLLGLALGFLILRLFDRRLKKK 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 4666666666665544433 12355566667666666666666655544
No 29
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=25.22 E-value=42 Score=30.25 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=7.4
Q ss_pred cchhhHHHHHHHHH
Q 027360 195 YGAMAGYLITMVLS 208 (224)
Q Consensus 195 ~Ga~~G~~lG~~~s 208 (224)
+|+.+|.++|.+++
T Consensus 61 ~G~~~G~~~G~~~g 74 (239)
T TIGR03789 61 VGAIIGGITGGLIG 74 (239)
T ss_pred HHHHHHHHHHHHhh
Confidence 45555555555544
No 30
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=24.96 E-value=46 Score=22.69 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=24.8
Q ss_pred hhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHH
Q 027360 163 PAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLIT 204 (224)
Q Consensus 163 ~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG 204 (224)
-..|..+|-|+ |+.++.=|.-.+.|..+|-..|
T Consensus 14 i~~g~~~G~~l---------D~~~~t~p~~~~~g~llG~~~g 46 (55)
T PF09527_consen 14 ILVGFFLGYWL---------DKWFGTSPWFTLIGLLLGIAAG 46 (55)
T ss_pred HHHHHHHHHHH---------HHHcCCChHHHHHHHHHHHHHH
Confidence 35677888888 8888776877777777776655
No 31
>PHA03048 IMV membrane protein; Provisional
Probab=24.21 E-value=3.2e+02 Score=21.57 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhhhcCCCCcchHHHHHHhHhhhhHHHH
Q 027360 49 PSRTLRLIWVTMCPLVILFYSCFRKNPEKCSYLKAVIRGVLALPIGAL 96 (224)
Q Consensus 49 P~~tl~~~~~~~~piv~~~~s~~r~~~k~~~~~~a~~~~ll~~~l~a~ 96 (224)
|+..+....+.....++..|.=+-|++.....+|++ .+.++.+|++
T Consensus 11 ~S~vli~GIiLL~~aCIfAfidfsK~k~~~~~wRal--sii~FIlgiv 56 (93)
T PHA03048 11 FSTALIGGIILLAASCIFAFVDFSKNKATVTVWRAL--SGIAFVLGIV 56 (93)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhhcCCCcchhHHHH--HHHHHHHHHH
Confidence 333444444444445555554455664445556553 2345555543
No 32
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=23.11 E-value=4.5e+02 Score=26.16 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=23.2
Q ss_pred CCCccCchhhcchhhHHHHHHHHHHHHHH
Q 027360 185 PWQEWPICVSYGAMAGYLITMVLSFVLVL 213 (224)
Q Consensus 185 pWQ~WPI~~~~Ga~~G~~lG~~~s~~~~~ 213 (224)
+++...+++..|...+.+...+++-.+..
T Consensus 455 ~i~~fAitl~iGii~s~~~sl~vtp~l~~ 483 (498)
T PRK05812 455 PVKGFAVTLGIGILTSMFTAITVTRALVN 483 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999998888887765533
No 33
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.81 E-value=67 Score=26.31 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=16.8
Q ss_pred cCchhhcchhhHHHHHHHHHHHHHHHhcCccCCCC
Q 027360 189 WPICVSYGAMAGYLITMVLSFVLVLARGGQQHPKA 223 (224)
Q Consensus 189 WPI~~~~Ga~~G~~lG~~~s~~~~~~~~~~~~~k~ 223 (224)
.+-+...|-++|-+.| +++.++.+.+.-|.+.|+
T Consensus 61 fs~~~i~~Ii~gv~aG-vIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAG-VIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SS-TCHHHHHHHHHHH-HHHHHHHHHHHHHHHS--
T ss_pred ccccceeehhHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 4444455555555544 344555566666665554
No 34
>PF09678 Caa3_CtaG: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); InterPro: IPR019108 This entry represents the CtaG protein required for the assembly of active caa3-type cytochrome c oxidase in Bacillus subtilis, and related proteins.
Probab=22.64 E-value=3.7e+02 Score=23.71 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=28.1
Q ss_pred HHHhCCCccccch--hHHHHHHHHHHHHHHhhhHhhcCCChHHHH
Q 027360 102 AIALGAPVGIQYF--PKTVNWSLLMSLFTFVPAASVFGSSWEDWR 144 (224)
Q Consensus 102 ~VLfGAP~~~~~~--~~T~llal~lS~lt~~P~~~~~g~~~~~w~ 144 (224)
.+.++-|+- .+- .-+.+..-|+-+..+.|+..+.|.+...++
T Consensus 35 ~~a~~spl~-~~~~~lfs~HmvqhllL~~vaPpLLvlg~P~~l~~ 78 (244)
T PF09678_consen 35 AVALGSPLD-VYAHYLFSAHMVQHLLLMMVAPPLLVLGAPVTLLL 78 (244)
T ss_pred HHHHhCcHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 567788882 221 234555566677889999999998865333
No 35
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=22.62 E-value=4.3e+02 Score=30.03 Aligned_cols=29 Identities=7% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCCCccCchhhcchhhHHHHHHHHHHHHH
Q 027360 184 RPWQEWPICVSYGAMAGYLITMVLSFVLV 212 (224)
Q Consensus 184 RpWQ~WPI~~~~Ga~~G~~lG~~~s~~~~ 212 (224)
-+++...+++++|.+.+.+...+++-.+.
T Consensus 1030 G~vkgFAvTLiIGII~SmftALfVtP~Ll 1058 (1403)
T PRK12911 1030 GPIKGFALTLIIGIFSSMFTALFMTKFFF 1058 (1403)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999998888776553
No 36
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=22.59 E-value=3.8e+02 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=21.8
Q ss_pred CCcchHHHHHHhHhhhhHHHHHHHHHHHHhCCCccccc
Q 027360 76 EKCSYLKAVIRGVLALPIGALVNALGAIALGAPVGIQY 113 (224)
Q Consensus 76 k~~~~~~a~~~~ll~~~l~a~l~~~~~VLfGAP~~~~~ 113 (224)
++....+-..-.++++|+-+. .++|+|++.++
T Consensus 217 q~~~~~~~~~~LiiglPll~~------~~~G~pl~~d~ 248 (397)
T COG4597 217 QQFRTWPTAAVLIIGLPLLAQ------WLFGAPLTFDV 248 (397)
T ss_pred CcccchhhHHHHHhccHHHHH------HHcCCCceecc
Confidence 344555566667788887554 78999997643
No 37
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.34 E-value=8.8e+02 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHhhhHhhc
Q 027360 115 PKTVNWSLLMSLFTFVPAASVF 136 (224)
Q Consensus 115 ~~T~llal~lS~lt~~P~~~~~ 136 (224)
.-++..+-.++.+.+.|++...
T Consensus 137 ~~~w~~~~~~g~l~~~p~~l~~ 158 (1092)
T PRK09776 137 FLIWVLSEAIGMLALVPLGLLF 158 (1092)
T ss_pred HHHHHHHHHHHHHHHhhHhhhc
Confidence 4577888889999999988865
No 38
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=21.88 E-value=4.9e+02 Score=24.91 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=31.6
Q ss_pred CcchhhhhhhhhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHH
Q 027360 153 NASVDYMICLPAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSF 209 (224)
Q Consensus 153 ~~~~e~~i~~~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~ 209 (224)
|...|..... |++.++|.+..-= |+ -+|=..|...+.|+..|...|.+.+.
T Consensus 85 NIG~EGQ~~~---Gai~a~~~~~~~~--~~-p~~l~~p~a~l~g~~~G~~wa~ipg~ 135 (356)
T COG4603 85 NIGAEGQFYA---GAIAAALVALLFP--DL-PSWLALPLALLAGAAGGGLWALIPGL 135 (356)
T ss_pred eeChHHHHHH---HHHHHHHHHHHcC--CC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554433 4455555542211 11 56777899999999999998877765
No 39
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=21.84 E-value=2.4e+02 Score=25.95 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=24.0
Q ss_pred hhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHHHHHHHhcCccCCCCC
Q 027360 164 AHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSFVLVLARGGQQHPKAD 224 (224)
Q Consensus 164 ~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~~~~~~~~~~~~~k~~ 224 (224)
.-|.++|.++| ++..+| .++-.++......+-+||.+.|+|
T Consensus 52 L~Gval~~ll~----------------~~~~~~----a~~~~l~~a~~i~~l~~~~~~~~D 92 (274)
T COG1108 52 LPGVALGFLLG----------------INPLLG----AFIFGLLAALLIGYLRRRSKLKED 92 (274)
T ss_pred HHHHHHHHHHh----------------hhHHHH----HHHHHHHHHHHHHHHHhhccchHH
Confidence 34778888887 444444 333333334444556666677776
No 40
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.59 E-value=92 Score=25.99 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccCC
Q 027360 197 AMAGYLITMVLSFVLVLARGGQQHP 221 (224)
Q Consensus 197 a~~G~~lG~~~s~~~~~~~~~~~~~ 221 (224)
+.+|.++|..+++.+.-.+.||.+.
T Consensus 106 ~~~~~~~g~~~g~~~~r~~~~~~~~ 130 (154)
T PRK10862 106 ALCGALLGGVGGFLLARGLSRKLAA 130 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456666666666555554455443
No 41
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=21.58 E-value=4.2e+02 Score=21.13 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=17.5
Q ss_pred cchHHHHHHhHhhhhHHHHHHHHHHH
Q 027360 78 CSYLKAVIRGVLALPIGALVNALGAI 103 (224)
Q Consensus 78 ~~~~~a~~~~ll~~~l~a~l~~~~~V 103 (224)
=++.++...+++...+++++..+...
T Consensus 61 isf~~a~~~g~~~~~ia~li~~v~~~ 86 (163)
T PF13858_consen 61 ISFGQAFKVGFLISLIAGLISAVFQY 86 (163)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887777777665544333
No 42
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.52 E-value=1.9e+02 Score=21.03 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=21.0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 027360 8 ENPSQSVSPMQTFFIHLICGVGLAVGLWVA 37 (224)
Q Consensus 8 ~~~~~~is~~~~~~~~~~~~~~l~~~~~~~ 37 (224)
..|..|++|......-+-..+|+++++.++
T Consensus 48 ~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 48 IVPDKPVSPKRALILALGLFLGLILGIGLA 77 (82)
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888777766667776666543
No 43
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=20.15 E-value=6.7e+02 Score=22.85 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=39.4
Q ss_pred hhhhhhhhhhhcccccCCCCCCCCCccCchhhcchhhHHHHHHHHHHHHHHHhcCcc
Q 027360 163 PAHGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLITMVLSFVLVLARGGQQ 219 (224)
Q Consensus 163 ~~~g~vlGaWlGA~pIPLDWDRpWQ~WPI~~~~Ga~~G~~lG~~~s~~~~~~~~~~~ 219 (224)
+.+.|-+-+=+|..|+-+-=..+++...++++.|-..|.....++.-......++|.
T Consensus 230 ~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~~Gli~~~~~sl~i~p~l~~~~~~~~ 286 (289)
T PRK13022 230 RTIITSLTTLLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLLLWLGVRR 286 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555555566666655444689999999999999998888777666555444443
Done!