Query 027360
Match_columns 224
No_of_seqs 129 out of 173
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 87.0 1.1 3.6E-05 29.7 4.6 37 187-223 6-44 (44)
2 2l2t_A Receptor tyrosine-prote 79.2 2.5 8.6E-05 28.0 4.0 32 192-223 10-43 (44)
3 2jwa_A Receptor tyrosine-prote 64.5 4.3 0.00015 26.9 2.4 34 187-220 7-41 (44)
4 2klu_A T-cell surface glycopro 47.9 26 0.00088 25.2 4.3 17 186-202 4-21 (70)
5 2lbg_A Major prion protein; co 27.1 31 0.0011 20.6 1.6 14 194-207 12-25 (27)
6 2ls4_A High affinity copper up 32.8 14 0.00046 21.9 0.0 13 191-203 7-19 (26)
7 3lge_E Sorting nexin-9; comple 21.2 24 0.00081 21.6 0.3 7 181-187 13-19 (31)
8 2k1k_A Ephrin type-A receptor 21.1 78 0.0027 19.8 2.8 16 194-209 9-24 (38)
9 2kxa_A Haemagglutinin HA2 chai 17.5 1.1E+02 0.0036 18.6 2.6 25 194-218 2-26 (30)
10 2k9y_A Ephrin type-A receptor 15.9 98 0.0034 18.9 2.4 10 195-204 16-25 (41)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=86.97 E-value=1.1 Score=29.74 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=22.7
Q ss_pred CccCchhhcchhhHHHHHHH--HHHHHHHHhcCccCCCC
Q 027360 187 QEWPICVSYGAMAGYLITMV--LSFVLVLARGGQQHPKA 223 (224)
Q Consensus 187 Q~WPI~~~~Ga~~G~~lG~~--~s~~~~~~~~~~~~~k~ 223 (224)
|+.+.+-..|.++|.+++.+ ....++++|+||++-|+
T Consensus 6 ~~s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 6 NGPKIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp CCSCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred CCCCcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence 45677777777777666633 33334566677666564
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=79.23 E-value=2.5 Score=27.97 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=16.0
Q ss_pred hhhcchhhHHHHH--HHHHHHHHHHhcCccCCCC
Q 027360 192 CVSYGAMAGYLIT--MVLSFVLVLARGGQQHPKA 223 (224)
Q Consensus 192 ~~~~Ga~~G~~lG--~~~s~~~~~~~~~~~~~k~ 223 (224)
+-..|.++|.+++ .+....++++++||++-|+
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3344444444443 2223334567777776665
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.49 E-value=4.3 Score=26.86 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=19.3
Q ss_pred CccCchhhcchhhHHHHHHHHHHHH-HHHhcCccC
Q 027360 187 QEWPICVSYGAMAGYLITMVLSFVL-VLARGGQQH 220 (224)
Q Consensus 187 Q~WPI~~~~Ga~~G~~lG~~~s~~~-~~~~~~~~~ 220 (224)
+.=|.|.+.|+.+|-++--+++++. +++++||+.
T Consensus 7 ~~~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 7 RASPLTSIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 3458888888888844333444443 334444444
No 4
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=47.86 E-value=26 Score=25.24 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=10.8
Q ss_pred CCccCchh-hcchhhHHH
Q 027360 186 WQEWPICV-SYGAMAGYL 202 (224)
Q Consensus 186 WQ~WPI~~-~~Ga~~G~~ 202 (224)
||.||.-+ +.|+.+|.+
T Consensus 4 ~~~~p~~LivlGg~~~ll 21 (70)
T 2klu_A 4 VPRGSMALIVLGGVAGLL 21 (70)
T ss_dssp SCCCSSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHH
Confidence 89999774 445544443
No 5
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=27.11 E-value=31 Score=20.58 Aligned_cols=14 Identities=21% Similarity=0.684 Sum_probs=8.0
Q ss_pred hcchhhHHHHHHHH
Q 027360 194 SYGAMAGYLITMVL 207 (224)
Q Consensus 194 ~~Ga~~G~~lG~~~ 207 (224)
++|+..||.+|...
T Consensus 12 VvGglGgy~lg~~m 25 (27)
T 2lbg_A 12 VVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHh
Confidence 45566666666543
No 6
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=32.79 E-value=14 Score=21.87 Aligned_cols=13 Identities=46% Similarity=0.823 Sum_probs=8.6
Q ss_pred chhhcchhhHHHH
Q 027360 191 ICVSYGAMAGYLI 203 (224)
Q Consensus 191 I~~~~Ga~~G~~l 203 (224)
++++.|+.+||++
T Consensus 7 iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 7 IAVAAGAGTGYFL 19 (26)
Confidence 4566777777764
No 7
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=21.21 E-value=24 Score=21.62 Aligned_cols=7 Identities=43% Similarity=1.730 Sum_probs=6.3
Q ss_pred CCCCCCC
Q 027360 181 DWERPWQ 187 (224)
Q Consensus 181 DWDRpWQ 187 (224)
|||.+|.
T Consensus 13 DWDdeWD 19 (31)
T 3lge_E 13 DWDEDWD 19 (31)
T ss_pred ccccccc
Confidence 8999997
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.09 E-value=78 Score=19.84 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=9.5
Q ss_pred hcchhhHHHHHHHHHH
Q 027360 194 SYGAMAGYLITMVLSF 209 (224)
Q Consensus 194 ~~Ga~~G~~lG~~~s~ 209 (224)
.-|++.|-++|.+++.
T Consensus 9 s~GaIAGiVvG~v~gv 24 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGA 24 (38)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCCceeeeehHHHHHH
Confidence 3566666666665543
No 9
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=17.54 E-value=1.1e+02 Score=18.62 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=16.5
Q ss_pred hcchhhHHHHHHHHHHHHHHHhcCc
Q 027360 194 SYGAMAGYLITMVLSFVLVLARGGQ 218 (224)
Q Consensus 194 ~~Ga~~G~~lG~~~s~~~~~~~~~~ 218 (224)
+.||+.|.+-|..-+++--+..-|+
T Consensus 2 lFGAIAGfieggW~gmi~gwyG~~h 26 (30)
T 2kxa_A 2 LFGAIAGFIEGGWTGMIDGWYGSGK 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred cchhhhhhhhcCcccccccccceee
Confidence 4689999999888777654443333
No 10
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=15.86 E-value=98 Score=18.91 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=3.8
Q ss_pred cchhhHHHHH
Q 027360 195 YGAMAGYLIT 204 (224)
Q Consensus 195 ~Ga~~G~~lG 204 (224)
.|+.+|.++.
T Consensus 16 ~~~vv~Gv~l 25 (41)
T 2k9y_A 16 IGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3333333333
Done!