Query 027361
Match_columns 224
No_of_seqs 269 out of 1607
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2t_A Acid phosphatase; all a 99.8 1.7E-20 5.9E-25 154.1 6.6 92 65-168 109-209 (231)
2 2ipb_A PHON protein, class A n 99.8 9.2E-20 3.1E-24 149.7 7.8 92 65-168 97-197 (230)
3 1qi9_A Protein (vanadium bromo 99.6 4.1E-15 1.4E-19 134.4 7.7 106 68-173 378-511 (556)
4 1up8_A Vanadium-dependent brom 99.2 1.9E-11 6.5E-16 110.8 9.4 83 87-169 477-574 (598)
5 3bb0_A Vanadium chloroperoxida 99.2 2.6E-11 9E-16 110.9 7.2 99 63-163 345-511 (609)
6 2y69_D Cytochrome C oxidase su 54.3 55 0.0019 24.7 7.3 49 151-219 101-149 (169)
7 1v54_D Cytochrome C oxidase su 49.6 72 0.0025 23.4 7.2 60 140-219 68-127 (147)
8 2lx0_A Membrane fusion protein 49.0 27 0.00091 18.0 4.4 26 147-172 2-27 (32)
9 1lbj_A Motilin; A-helix, B-tur 27.9 34 0.0011 17.1 1.6 12 212-223 14-25 (26)
10 2ks1_B Epidermal growth factor 19.4 1.4E+02 0.0048 17.1 3.4 20 153-172 17-36 (44)
No 1
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.81 E-value=1.7e-20 Score=154.15 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhcCCCCCcC-------ccc--cCCCCCCCCchhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 027361 65 FINEFIKTTVQQARPEMCV-------LLE--TCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHWTLA 135 (224)
Q Consensus 65 ~~~~~lK~~~~rpRP~~~~-------~~~--~~~~~sfPSgHa~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (224)
+++..+|..++||||+... ... ...++||||||++.+++++.++...+ . . ... ..+.++
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~--~-----~-~~~----~~~~~a 176 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEIN--P-----Q-RQN----EILKRG 176 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHTCCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHC--G-----G-GHH----HHHHHH
T ss_pred HHHHHHHHHhCCCCcCccCCCCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHH--H-----H-HHH----HHHHHH
Confidence 6889999999999996432 122 46889999999987776665544332 1 0 111 235678
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH
Q 027361 136 VLTMYSRVYLGYHTVAQVFSGAILGILIGAGWF 168 (224)
Q Consensus 136 ~lv~~sRv~lg~H~~sDVl~G~~lG~~~~~~~~ 168 (224)
..+|+||+|+|+||++||++|+++|..++...+
T Consensus 177 ~~v~~SRvylGvH~psDVlaG~~lG~~~~~~~~ 209 (231)
T 1d2t_A 177 YELGQSRVICGYHWQSDVDAARVVGSAVVATLH 209 (231)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998876543
No 2
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.79 E-value=9.2e-20 Score=149.71 Aligned_cols=92 Identities=18% Similarity=0.091 Sum_probs=68.5
Q ss_pred HHHHHHHHhhhcCCCCCcCc----cc-----cCCCCCCCCchhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 027361 65 FINEFIKTTVQQARPEMCVL----LE-----TCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHWTLA 135 (224)
Q Consensus 65 ~~~~~lK~~~~rpRP~~~~~----~~-----~~~~~sfPSgHa~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (224)
+++..+|..++||||+.... .. ...++||||||++.+++++.++..++ . . ... ..+.++
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~--~-----~-~~~----~~~~~a 164 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQAR--P-----E-RAQ----ELARRG 164 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTTCCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHC--G-----G-GHH----HHHHHH
T ss_pred HHHHHHHHHhCCCCcCccCCCCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHH--H-----H-HHH----HHHHHH
Confidence 68999999999999965321 11 34789999999987776655444322 1 1 111 235677
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH
Q 027361 136 VLTMYSRVYLGYHTVAQVFSGAILGILIGAGWF 168 (224)
Q Consensus 136 ~lv~~sRv~lg~H~~sDVl~G~~lG~~~~~~~~ 168 (224)
.++|+||||+|+||++||++|+++|..++...+
T Consensus 165 ~~v~~SRv~~G~H~~sDVlaG~~lG~~~~~~~~ 197 (230)
T 2ipb_A 165 WEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQ 197 (230)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998876543
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=99.56 E-value=4.1e-15 Score=134.37 Aligned_cols=106 Identities=20% Similarity=0.080 Sum_probs=72.0
Q ss_pred HHHHHhhhcCCCCCc-----Cccc------cCCCCCCCCchhHHHHHHHHHHHHHHHHh-----cccc-----chhhH--
Q 027361 68 EFIKTTVQQARPEMC-----VLLE------TCDSHGWPSSHSQYMFFFAVYFTLLTCKG-----IGLW-----GIKNR-- 124 (224)
Q Consensus 68 ~~lK~~~~rpRP~~~-----~~~~------~~~~~sfPSgHa~~~~~~a~~~~l~~~~~-----~~~~-----~~~~~-- 124 (224)
.++|.+++|+||+.. .... ...++||||||++.+++++..+..++..+ .... ....+
T Consensus 378 ~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~r~~~~~~G~~r~~ 457 (556)
T 1qi9_A 378 ELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGLKLID 457 (556)
T ss_dssp HHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSCEEECTTSSSEEE
T ss_pred hHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 589999999999642 1222 45789999999987777766665444221 0000 00000
Q ss_pred ----HHHH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 027361 125 ----WFSN-VLHWTLAVLTMYSRVYLGYHTVAQVFSGAILGILIGAGWFWFVNS 173 (224)
Q Consensus 125 ----~~~~-~~~~~~~~lv~~sRv~lg~H~~sDVl~G~~lG~~~~~~~~~~~~~ 173 (224)
.... .....++.++|+||||+|+||++||++|+.+|..++...+.-.+.
T Consensus 458 ~~~~~l~~~~~l~~lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~vl~~~~~ 511 (556)
T 1qi9_A 458 FRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQELM 511 (556)
T ss_dssp CCSSCCBHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeehhhHHHHHHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0110 013457889999999999999999999999999988876654443
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=99.24 E-value=1.9e-11 Score=110.77 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=55.7
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHHHhcccc----------chhh-----HHHHHHHHHHHHHHHHHHhhhcCCCChH
Q 027361 87 TCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLW----------GIKN-----RWFSNVLHWTLAVLTMYSRVYLGYHTVA 151 (224)
Q Consensus 87 ~~~~~sfPSgHa~~~~~~a~~~~l~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~lv~~sRv~lg~H~~s 151 (224)
....+||||||++.+++++..+..++....... .+.. .......+..++..+|+||+|+|+||++
T Consensus 477 tP~~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHypS 556 (598)
T 1up8_A 477 SPFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFS 556 (598)
T ss_dssp SCSSCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCHH
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecHH
Confidence 347899999999876666555544443221000 0000 0001124567888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027361 152 QVFSGAILGILIGAGWFW 169 (224)
Q Consensus 152 DVl~G~~lG~~~~~~~~~ 169 (224)
||++|+.+|..++.....
T Consensus 557 DVlAG~~LG~aVa~~vl~ 574 (598)
T 1up8_A 557 DQFESLLLGEQVAIGILE 574 (598)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999987766544
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=99.18 E-value=2.6e-11 Score=110.89 Aligned_cols=99 Identities=18% Similarity=0.094 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhhcCCCCCc--------------C-cc----------ccCCCCCCCCchhHHHHHHHHHHHHHHH----
Q 027361 63 SQFINEFIKTTVQQARPEMC--------------V-LL----------ETCDSHGWPSSHSQYMFFFAVYFTLLTC---- 113 (224)
Q Consensus 63 ~~~~~~~lK~~~~rpRP~~~--------------~-~~----------~~~~~~sfPSgHa~~~~~~a~~~~l~~~---- 113 (224)
+.+.++..|..+.|+||... . .. .....+||||||++++++++..+..++.
T Consensus 345 A~ia~w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~~~~~~~~~~tP~~pSYPSGHAt~s~A~A~vL~~~f~~~~~ 424 (609)
T 3bb0_A 345 AGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYYNGRVG 424 (609)
T ss_dssp HHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCCTTSSSCCBCCSSCCSSCHHHHHHHHHHHHHHHHHBTTTB
T ss_pred HHHHHHHHhhhhcCCCcCchhhcccccccCCccchhhcccccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 44556789999999999431 0 11 1457799999999888877777665551
Q ss_pred -------Hhcccc---c-----------------------------hhhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHH
Q 027361 114 -------KGIGLW---G-----------------------------IKNRWFSNVLHWTLAVLTMYSRVYLGYHTVAQVF 154 (224)
Q Consensus 114 -------~~~~~~---~-----------------------------~~~~~~~~~~~~~~~~lv~~sRv~lg~H~~sDVl 154 (224)
.+.... + ...+.+. ....++..+|+||+|+|+||++||+
T Consensus 425 ~~~~~G~d~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~--sl~~~A~e~g~SRIY~GVHypsDv~ 502 (609)
T 3bb0_A 425 TWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHFD--SAWELMFENAISRIFLGVHWRFDAA 502 (609)
T ss_dssp CCCTTSCCCCCEEEEECTTSSSSCEEESSCCCTTSCGGGSCEEECCCCEEEES--CHHHHHHHHHHHHHHTTSSCHHHHS
T ss_pred cccccCccccceeecccccccccccccccccccccccccccccccccchhhHH--HHHHHHHHHhhhhheeeeeCHHHHH
Confidence 000000 0 0000001 2345788999999999999999999
Q ss_pred HHHHHHHHH
Q 027361 155 SGAILGILI 163 (224)
Q Consensus 155 ~G~~lG~~~ 163 (224)
+|..+|..+
T Consensus 503 aG~~lG~~~ 511 (609)
T 3bb0_A 503 AARDILIPT 511 (609)
T ss_dssp CHHHHBCBC
T ss_pred HHHHHHHhh
Confidence 999998765
No 6
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=54.28 E-value=55 Score=24.69 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHhhcccccceeeecCCCCCchhHHHHHHHHHHHHhhhh
Q 027361 151 AQVFSGAILGILIGAGWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPDPLKFEYDNARAARSSANK 219 (224)
Q Consensus 151 sDVl~G~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
--|++|.++++.++.+.+...+... ....|..+..||+.+..+|-++.+
T Consensus 101 K~V~ggv~~~i~~s~~~f~~~r~~v--------------------~~p~P~T~~~Ewqeaq~erml~~~ 149 (169)
T 2y69_D 101 KTVVGAAMFFIGFTALLLIWEKHYV--------------------YGPIPHTFEEEWVAKQTKRMLDMK 149 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--------------------CCCCCGGGSHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc--------------------cCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3699999999888888887655431 123455677888876655554443
No 7
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=49.58 E-value=72 Score=23.45 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=36.5
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHhhcccccceeeecCCCCCchhHHHHHHHHHHHHhhhh
Q 027361 140 YSRVYLGYHTVAQVFSGAILGILIGAGWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPDPLKFEYDNARAARSSANK 219 (224)
Q Consensus 140 ~sRv~lg~H~~sDVl~G~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
++|.-.+---+--|++|.++++.++.+.+...+... ....|..+..||+.+..+|-++.+
T Consensus 68 ~ae~~~p~gewK~v~g~v~~~i~~s~~~f~~~r~~v--------------------~~p~P~T~~~Ewqeaq~erm~~~~ 127 (147)
T 1v54_D 68 FAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYV--------------------YGPIPHTFEEEWVAKQTKRMLDMK 127 (147)
T ss_dssp HHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------CCCCCGGGSHHHHHHHHHHHHHTT
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc--------------------cCCCCCCCCHHHHHHHHHHHHHcc
Confidence 344333333334599999998888888887655431 123455677888876655554433
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=48.99 E-value=27 Score=17.99 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q 027361 147 YHTVAQVFSGAILGILIGAGWFWFVN 172 (224)
Q Consensus 147 ~H~~sDVl~G~~lG~~~~~~~~~~~~ 172 (224)
.|+.-+|++|.+.=.....+.+++++
T Consensus 2 khtiweviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999997654433333444443
No 9
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=27.91 E-value=34 Score=17.14 Aligned_cols=12 Identities=0% Similarity=0.028 Sum_probs=4.6
Q ss_pred HHHHhhhhhccC
Q 027361 212 AARSSANKVSKS 223 (224)
Q Consensus 212 ~~~~~~~~~~~~ 223 (224)
+++-|||..+||
T Consensus 14 qEkErNkgqkKs 25 (26)
T 1lbj_A 14 QEKERNKGQXXX 25 (26)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHhccCCccC
Confidence 444455555555
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.39 E-value=1.4e+02 Score=17.06 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027361 153 VFSGAILGILIGAGWFWFVN 172 (224)
Q Consensus 153 Vl~G~~lG~~~~~~~~~~~~ 172 (224)
|++|.++=++++.+++++.+
T Consensus 17 VVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 44444443334444444433
Done!