BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027362
(224 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis]
gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]
Length = 340
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/214 (57%), Positives = 153/214 (71%), Gaps = 12/214 (5%)
Query: 13 HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
H +P W+ P+ TT H ++ + S RL LLHSS KKLS LCH+PRL
Sbjct: 19 HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70
Query: 73 KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
KD WC A +F G++F + +ND AS+ LSFFNGG T K G +G + + +++N F
Sbjct: 71 KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130
Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN YSLNSIGPT+E + GPRR+L VYF+SAIAS+
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASS 224
>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]
Length = 325
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/226 (55%), Positives = 152/226 (67%), Gaps = 25/226 (11%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIAS+
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASS 206
>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa]
gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]
Length = 325
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/226 (55%), Positives = 152/226 (67%), Gaps = 25/226 (11%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIAS+
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASS 206
>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera]
gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 148/209 (70%), Gaps = 10/209 (4%)
Query: 21 TRPPLNLITTTAKHSLSVSLSRRL---LHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWC 77
+R PL+ + T H ++ + S RL +H +H L SS K+L+ L H+P LK+ W
Sbjct: 10 SRFPLSKVGPTPAHLITTAASLRLGHFIHRQYIHLGFFLRSSFKRLAHLAHVPGLKNIWF 69
Query: 78 ENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW 133
A +F G++F +D+F+++ S FF G TRK S EG S+ + R N GRQW
Sbjct: 70 GKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQW 126
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TNIL+A+NVLV+I Q ATQ KLLLWGAKINSLIDKGQFWRLATS+FLHANI HLMVNC+S
Sbjct: 127 TNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFS 186
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LNS+GPT+E + GPRRYL VYF+SAIAS+
Sbjct: 187 LNSVGPTVENLSGPRRYLAVYFTSAIASS 215
>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max]
gi|255640088|gb|ACU20335.1| unknown [Glycine max]
Length = 342
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 132/204 (64%), Gaps = 7/204 (3%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL+LI T A L RR HH L LLHS KKL+ L HI RL D+WC+ F+
Sbjct: 22 PLDLIATAASLHFGHLLRRRATHH--LRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQL 79
Query: 84 NGVNFFRFTNDAFASSLSFFNGGG-----TRKNSGHEGTSHLDTARTNLFIGRQWTNILL 138
NG+N+ + + SS S + G G S+ + + F GR+WT ILL
Sbjct: 80 NGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILL 139
Query: 139 AVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
A NVL YIAQ ATQ KLLLWGAKINSLIDKGQ WRLATS+FLHANI HL+VNCYSLNS+G
Sbjct: 140 AANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVG 199
Query: 199 PTMEKICGPRRYLGVYFSSAIASN 222
PT+E GPRR+L VYF SAIAS+
Sbjct: 200 PTVESFSGPRRFLAVYFISAIASS 223
>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]
Length = 327
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 129/196 (65%), Gaps = 16/196 (8%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTNDAFAS----SLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D S S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYF 215
T+E GPRRYL +YF
Sbjct: 186 TVESFSGPRRYLAIYF 201
>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula]
gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]
Length = 327
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 129/196 (65%), Gaps = 16/196 (8%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTNDAFAS----SLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D S S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYF 215
T+E GPRRYL +YF
Sbjct: 186 TVESFSGPRRYLAIYF 201
>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 336
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 130/201 (64%), Gaps = 8/201 (3%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIASN 222
E + GP+R+L VY +SA+AS+
Sbjct: 198 ESLGGPKRFLAVYLTSAVASS 218
>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 343
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 128/199 (64%), Gaps = 8/199 (4%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIA 220
E + GP+R+L VY +SA+A
Sbjct: 198 ESLGGPKRFLAVYLTSAVA 216
>gi|11761473|gb|AAG40087.1|AC079374_1 unknown protein [Arabidopsis thaliana]
Length = 369
Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 6/167 (3%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVA 242
>gi|25518651|pir||F86382 hypothetical protein F4F7.14 - Arabidopsis thaliana
Length = 373
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 6/167 (3%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVA 242
>gi|388498512|gb|AFK37322.1| unknown [Lotus japonicus]
Length = 220
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 84/97 (86%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
N F R+WTNILLA NVL +IAQ ATQ KLLLWGAK+NSLIDKGQ WRLATS+FLHANI
Sbjct: 5 NPFNRRKWTNILLAANVLFFIAQLATQGKLLLWGAKVNSLIDKGQIWRLATSSFLHANIG 64
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HLM+NC+SLNS+GPT+E+ GPRR+L VYF SAIAS+
Sbjct: 65 HLMINCFSLNSVGPTVERFSGPRRFLAVYFISAIASS 101
>gi|115479511|ref|NP_001063349.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|51535953|dbj|BAD38035.1| rhomboid-like protein [Oryza sativa Japonica Group]
gi|113631582|dbj|BAF25263.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|218202268|gb|EEC84695.1| hypothetical protein OsI_31626 [Oryza sativa Indica Group]
gi|222641709|gb|EEE69841.1| hypothetical protein OsJ_29608 [Oryza sativa Japonica Group]
Length = 349
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 107/163 (65%), Gaps = 8/163 (4%)
Query: 66 LCHIPRLKDQWCENAFRFNGVNFFRFTNDA----FASSLSFFNGGGTRKNSGHEGTSHLD 121
L +PR+ D W E + F + +A +A S FNG G+ + + G L
Sbjct: 74 LGALPRIGDIWFEGSDSFATHSILGVLENALSAPYACSSVLFNGNGSDRR--YIGRGKLP 131
Query: 122 TARTNLFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAF 179
+ R + ++ WTNILLAVN+L Y+AQ TQ +LL+WGAKINS+ID+G+ WRLATS+
Sbjct: 132 SRRPSGINSKKRLWTNILLAVNILAYVAQITTQGRLLIWGAKINSMIDRGELWRLATSSL 191
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LHAN+AHL NC+SLNSIGP +E + GPRRYL VYF+SA+A +
Sbjct: 192 LHANLAHLAFNCFSLNSIGPMVEMLTGPRRYLAVYFTSALAGS 234
>gi|357158730|ref|XP_003578222.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 345
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 104/158 (65%), Gaps = 4/158 (2%)
Query: 69 IPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNG--GGTRKNSGHEGTSHLDTARTN 126
+PR+ + W + F + F++S + GG R N + G +L +R
Sbjct: 73 LPRIGEIWFGGSHPIETNQVFGSLGNVFSASFVCSSALFGGNRSNGRYIGNGNLQPSRPR 132
Query: 127 LFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
++ WTN+LLAVN+L YIAQ ATQ KLL+WGAK+NSLID+G+FWRLATS+ LH N+
Sbjct: 133 GINSKKRLWTNVLLAVNILAYIAQVATQGKLLMWGAKVNSLIDRGEFWRLATSSLLHGNL 192
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL NC+SLNSIGPT+E + GPRR+L VYF+SA+A +
Sbjct: 193 THLAFNCFSLNSIGPTVELVTGPRRFLAVYFTSALAGS 230
>gi|242044898|ref|XP_002460320.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
gi|241923697|gb|EER96841.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
Length = 341
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 26 NLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNG 85
N++ A L SL RR A L V+ L L P++ D W E + F
Sbjct: 40 NVVAAFAGAQLGRSLRRRF-------AGLLRSPEVRHLDAL---PKMGDFWFEGSEPFAT 89
Query: 86 VNFFRFTNDA----FASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
+ + S + F+G G+ G R R WTN+LLA+N
Sbjct: 90 FPILGAIGNVLSAPYVCSSALFSGNGSGGRYISNGKLLSRRPRGIDSKKRLWTNVLLALN 149
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
VL Y+AQ A+Q KLLLWGAKINSLID+GQFWRLATS+ LHA++ HL NC+SLNSIGP +
Sbjct: 150 VLAYVAQVASQGKLLLWGAKINSLIDRGQFWRLATSSLLHADLTHLAFNCFSLNSIGPMV 209
Query: 202 EKICGPRRYLGVYFSSAIASN 222
E + GPRR+L VYFSSA+A +
Sbjct: 210 EMLTGPRRFLAVYFSSALAGS 230
>gi|414589617|tpg|DAA40188.1| TPA: rhomboid-like protein [Zea mays]
Length = 341
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 105/167 (62%), Gaps = 16/167 (9%)
Query: 66 LCHIPRLKDQWCENA-----FRFNGVNFFRFTNDAFASSLSF-FNGGGTRKNSGHEGTSH 119
L +P++ W E + F G F+ SS F NG G R S + S
Sbjct: 70 LDALPKMGSFWFEGSESLATFHILGAIGIVFSAPYVCSSALFSGNGSGGRYISNGKLLSR 129
Query: 120 ----LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLA 175
+D+ + R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLA
Sbjct: 130 RPRGIDSKK------RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLA 183
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
TS+ LHAN+ HL NC+SLNSIGP +E + GPRRYL VYFSSA+A +
Sbjct: 184 TSSLLHANLTHLAFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGS 230
>gi|226503627|ref|NP_001148641.1| rhomboid-like protein [Zea mays]
gi|195621054|gb|ACG32357.1| rhomboid-like protein [Zea mays]
Length = 346
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 79/92 (85%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 144 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 203
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
C+SLNSIGP +E + GPRRYL VYFSSA+A +
Sbjct: 204 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGS 235
>gi|414589616|tpg|DAA40187.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 341
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 104/164 (63%), Gaps = 16/164 (9%)
Query: 69 IPRLKDQWCENA-----FRFNGVNFFRFTNDAFASSLSF-FNGGGTRKNSGHEGTSH--- 119
+P++ W E + F G F+ SS F NG G R S + S
Sbjct: 73 LPKMGSFWFEGSESLATFHILGAIGIVFSAPYVCSSALFSGNGSGGRYISNGKLLSRRPR 132
Query: 120 -LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSA 178
+D+ + R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+
Sbjct: 133 GIDSKK------RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSS 186
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LHAN+ HL NC+SLNSIGP +E + GPRRYL VYFSSA+A +
Sbjct: 187 LLHANLTHLAFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGS 230
>gi|223943385|gb|ACN25776.1| unknown [Zea mays]
Length = 266
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 79/92 (85%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 64 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 123
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
C+SLNSIGP +E + GPRRYL VYFSSA+A +
Sbjct: 124 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGS 155
>gi|168058279|ref|XP_001781137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667455|gb|EDQ54085.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 84/119 (70%), Gaps = 3/119 (2%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIG---RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINS 164
T ++G E + T IG R WTNI+L VN+L++ AQ A+Q +LLL GAK+NS
Sbjct: 155 TAASTGDENDTSSANTITGYGIGSRSRNWTNIILGVNLLMFGAQIASQGQLLLLGAKVNS 214
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
LIDKGQ+WR T + LHANI HL+VNCYSLNS+GPT+E + G +R+L +Y SAIAS+
Sbjct: 215 LIDKGQWWRFVTPSVLHANIMHLLVNCYSLNSVGPTVESLSGGKRFLAIYAVSAIASSG 273
>gi|452819642|gb|EME26697.1| rhomboid family protein [Galdieria sulphuraria]
Length = 371
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WT ILL N++V++ Q AT ++LLL GAK+N LI GQ +RL T FLH NIAHLMVNCY
Sbjct: 164 WTKILLVTNIVVFLLQMATANQLLLMGAKVNELISSGQLYRLLTPIFLHGNIAHLMVNCY 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
SL S+GP +E+ G R++G+Y S
Sbjct: 224 SLYSLGPVVERCFGSHRFIGLYLFSGF 250
>gi|307110920|gb|EFN59155.1| hypothetical protein CHLNCDRAFT_138007 [Chlorella variabilis]
Length = 247
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 66/93 (70%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
GR+ T++LL N L++ Q T+ L +WG K+N+L+ GQ+WRL T AFLH N+ HL V
Sbjct: 35 GRRATDVLLVSNALLFGLQLLTKQALTVWGVKVNALVVAGQWWRLLTPAFLHGNLMHLAV 94
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
NCYSLN++GP +E GP R+L +Y S+A+A N
Sbjct: 95 NCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGN 127
>gi|384247206|gb|EIE20693.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 238
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 67/92 (72%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T+ILL +N VY+AQ ++DKLLL GAK N LI G++WRL T LHAN+ HL+ N
Sbjct: 35 RRVTDILLVLNAAVYVAQLVSKDKLLLLGAKDNQLIRAGEWWRLLTPVALHANLIHLLTN 94
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
YSLNS+GP +E +CG +R++ VY +SA+ +
Sbjct: 95 NYSLNSLGPAVEGLCGRQRFVSVYTASALVGS 126
>gi|159482562|ref|XP_001699338.1| rhomboid-like protein [Chlamydomonas reinhardtii]
gi|158272974|gb|EDO98768.1| rhomboid-like protein [Chlamydomonas reinhardtii]
Length = 406
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 65/91 (71%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N LV++ + ++D +L+WGAK+N+LI GQ+WRL T FLH+N+ HL +N
Sbjct: 90 RRTTDVFLCLNALVFVLNWLSRDVVLIWGAKVNALIAAGQWWRLVTPLFLHSNLFHLAIN 149
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++L+++GP +E + G RR +Y +SA S
Sbjct: 150 MHALHTLGPQVEVVSGSRRTAAIYMASASCS 180
>gi|302823732|ref|XP_002993515.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
gi|300138646|gb|EFJ05407.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
Length = 280
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 58/74 (78%)
Query: 149 FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
T+++L+LWGAK+N+LI KGQ WRL T AFLH N+ HL++NCYS++S+GP +E + G +
Sbjct: 72 IGTENRLILWGAKVNNLIAKGQIWRLLTPAFLHVNLIHLLLNCYSVHSLGPHLESLGGSK 131
Query: 209 RYLGVYFSSAIASN 222
R+L V+ +A+ ++
Sbjct: 132 RFLVVFAVAAVTTS 145
>gi|302841472|ref|XP_002952281.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
gi|300262546|gb|EFJ46752.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
Length = 399
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 61/89 (68%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N L+Y + ++D LLLWG K+N+LI GQ WRL T FLH+N HL++N
Sbjct: 99 RRATDVFLVLNALIYALNWLSKDVLLLWGCKVNALIAAGQLWRLVTPLFLHSNAFHLLIN 158
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
++L+++GP +E + G +R VY +S +
Sbjct: 159 MHALHTLGPQVEVVSGSKRTSVVYLASGV 187
>gi|145347053|ref|XP_001417993.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578221|gb|ABO96286.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 268
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 52/92 (56%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R TN ++ + Q + + GAK+N I GQ WRLAT FLH + HLMVN
Sbjct: 49 RACTNAIMIGTASAFALQILSGQAITALGAKVNERIAAGQLWRLATPIFLHGGLPHLMVN 108
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
YSLNSIGP ME G ++L VYF + +A N
Sbjct: 109 MYSLNSIGPLMEATFGREQFLAVYFGAGVAGN 140
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Query: 128 FIGRQWTNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ T D LL GAK N LI +G+ WRL T AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNLGAKYNPLIYQGEVWRLVTCAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI S
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITS 234
>gi|376261459|ref|YP_005148179.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373945453|gb|AEY66374.1| putative membrane protein [Clostridium sp. BNL1100]
Length = 519
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 14/131 (10%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLF-----IGRQW-TNILLAVNVLVY-IAQF----- 149
FF+ G R+ + ++ + R F + W T I++A+N+++Y + Q
Sbjct: 147 FFSKGLDRRETDYQDIEGIIEKRKKDFEIQFKVQTPWLTYIIIALNIVMYGLLQLVSMKT 206
Query: 150 --ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
A + +L +GAK+N+LI +GQ+WR FLHA+I HL VNCYS+ IG +EKI G
Sbjct: 207 GTAYEQQLEPFGAKVNNLIMEGQYWRFFAPMFLHADIVHLAVNCYSIYIIGSQVEKIFGR 266
Query: 208 RRYLGVYFSSA 218
R+L +YF S
Sbjct: 267 GRFLAIYFVSG 277
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 8/99 (8%)
Query: 131 RQWTNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHA 182
++ T IL+A+NV++++ + T D L+ +GAK N LI +G+ WRL T AFLH
Sbjct: 136 KKSTLILIAMNVIIFLLTAFISRRILTIDINVLINFGAKYNPLIYQGEIWRLITCAFLHG 195
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
IAHL+ N YSL +GP +E+I G ++YL +YF+SAI S
Sbjct: 196 GIAHLLSNMYSLYILGPQVERIFGLKKYLCIYFTSAITS 234
>gi|428163351|gb|EKX32426.1| hypothetical protein GUITHDRAFT_166710 [Guillardia theta CCMP2712]
Length = 353
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMV 189
R T+ L VNV+V++ Q TQ LL GAKI S+I + Q++RL T FLH +++H++V
Sbjct: 142 RAVTDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILV 201
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
NC+SLN+IGP +E+ G R + Y + IA N
Sbjct: 202 NCFSLNAIGPQVERYFGTERTVITYLLAGIAGN 234
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Query: 128 FIGRQWTNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ T D LL +GAK N LI +G+ WRL AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNFGAKYNPLIYQGEVWRLVACAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI S
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITS 234
>gi|326202014|ref|ZP_08191884.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
gi|325987809|gb|EGD48635.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
Length = 519
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVY----IAQFAT----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T I++A+NVL+Y + T + +L +GAK+N+LI +GQ+WR T FLHA+I
Sbjct: 185 TYIIIAMNVLMYGLLRLVAMKTGTSYEQQLEPFGAKVNNLIMEGQYWRFFTPMFLHADIV 244
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HL VNCYS+ IG +EKI G R+L +YF + +
Sbjct: 245 HLAVNCYSIYIIGAQVEKIFGRGRFLAIYFVAGL 278
>gi|28210270|ref|NP_781214.1| rhomboid family membrane protein [Clostridium tetani E88]
gi|28202706|gb|AAO35151.1| conserved membrane protein (rhomboid family) [Clostridium tetani
E88]
Length = 345
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 14/99 (14%)
Query: 134 TNILLAVNVLVYIAQFATQ-----------DKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+++N+++Y F T D L+ GAK+N LID GQ++RL T FLH
Sbjct: 167 TFILISMNIIMY---FITALLSGNIIDSNIDVLIFLGAKVNPLIDIGQYYRLLTCIFLHG 223
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ HL +N Y+L++IGP +EKI G +YL +YF S I S
Sbjct: 224 GLIHLALNMYALSAIGPLVEKIYGKFKYLAIYFLSGICS 262
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 8/96 (8%)
Query: 134 TNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ VNVL YI F + L+ GAK+N LI +G+++RL T FLH I
Sbjct: 141 TYILITVNVLAYIVTAYLSGNFVDSNINVLVFLGAKVNYLIARGEYYRLITCMFLHGGIM 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
HL++N ++L S+GP +EKI G RYL +YF S I S
Sbjct: 201 HLLLNMFALYSLGPFIEKIYGKTRYLIIYFLSGIVS 236
>gi|359414482|ref|ZP_09206947.1| Rhomboid family protein [Clostridium sp. DL-VIII]
gi|357173366|gb|EHJ01541.1| Rhomboid family protein [Clostridium sp. DL-VIII]
Length = 332
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 8/99 (8%)
Query: 134 TNILLAVNVLVYIAQ-------FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N++V++ F ++L++ GAKIN LID G+ WRL T AFLH+ +
Sbjct: 144 TFILIGINIVVFLLTAFISGNIFDIDTRVLIYFGAKINILIDHGEIWRLLTCAFLHSGLI 203
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
H++ N YSL IGP +E+I G R+YL +Y S I ++ S
Sbjct: 204 HIVCNMYSLYIIGPQIEQIYGIRKYLIIYLISCITASIS 242
>gi|451821413|ref|YP_007457614.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787392|gb|AGF58360.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 332
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Query: 128 FIGRQWTNILLAVNVLVYI-------AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAF 179
F + T+ L+ +N+ +++ + F K+LL +GAK N+LIDKGQ WRL T AF
Sbjct: 138 FENKLLTSGLIVINIAIFLITAFLSGSLFDIDTKVLLDYGAKYNALIDKGQVWRLLTCAF 197
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
LH+ + H+ N YSL IGP +E+I G +YL +Y S+I +
Sbjct: 198 LHSGLIHIACNMYSLYIIGPQIEQIYGTLKYLIIYIVSSITA 239
>gi|220929279|ref|YP_002506188.1| rhomboid family protein [Clostridium cellulolyticum H10]
gi|219999607|gb|ACL76208.1| Rhomboid family protein [Clostridium cellulolyticum H10]
Length = 519
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 39/216 (18%)
Query: 17 FDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQW 76
F + + P ++ + +H + ++ +R + ++ S K+ + +P
Sbjct: 87 FLFDSTPDMDKVEIIKQHQMDITSEKRFMKCISVNI------SAKQAEKYFSVP------ 134
Query: 77 CENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQ---- 132
AF V F+ FF+ G ++ + ++ + R F +
Sbjct: 135 ---AFDAGLVKSFK----------RFFSKGLDKRETSYKDIEDVIEKRKKDFEIQSKAET 181
Query: 133 -W-TNILLAVNVLVY-IAQF-------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
W T I++A N++++ + Q A Q +L +GAK+N+LI +GQ+WR + FLH
Sbjct: 182 PWLTYIIIAFNIVMWGLLQLVSMRTGTAYQQQLEPFGAKVNNLIMEGQYWRFISPMFLHG 241
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+I HL VNCYSL IG +EKI G R+L +YF S
Sbjct: 242 DIVHLAVNCYSLYIIGSQVEKIFGRGRFLAIYFVSG 277
>gi|308804015|ref|XP_003079320.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
gi|116057775|emb|CAL53978.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
Length = 651
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ ++ + Q T+ L +G KIN I G+ WRL T FLH + HLMVN
Sbjct: 55 RACTDGIIVATCGAFALQLLTRQTLTGFGVKINEKIAAGELWRLVTPMFLHGGLPHLMVN 114
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
YSLNSIGP +E G ++ Y ++ +A N
Sbjct: 115 MYSLNSIGPLVEATFGREQFCATYLAAGLAGN 146
>gi|357128747|ref|XP_003566031.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 214
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N+LI KGQ WRLATS+ LH + HL VN YSL+ +GP +E+ GPRR+L +Y +SA+A +
Sbjct: 45 NALIKKGQIWRLATSSLLHGGLFHLAVNAYSLHVVGPEVEEATGPRRFLAIYCTSALAGS 104
>gi|410728950|ref|ZP_11367038.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410596504|gb|EKQ51173.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 332
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 8/107 (7%)
Query: 123 ARTNLFIGRQWTNILLAVNVLVYIA----QFATQDK----LLLWGAKINSLIDKGQFWRL 174
+ N F + T IL+ +NV++++ F D L+ +GAK+N LI++GQ WRL
Sbjct: 136 VKKNFFQYQVLTYILIGINVIIFLLTAFLSFDIYDINTGILIDFGAKVNILINQGQIWRL 195
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T AFLH+ + H+ N YSL IGP +++I G +YL +Y S + +
Sbjct: 196 FTCAFLHSGLIHIACNMYSLYIIGPQIQQIFGTVKYLIIYACSCLTA 242
>gi|431793836|ref|YP_007220741.1| hypothetical protein Desdi_1896 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784062|gb|AGA69345.1| putative membrane protein [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 321
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 11/118 (9%)
Query: 107 GTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAK 161
G NSG S T R L T L+ +N+ ++ +A +T L+++GAK
Sbjct: 124 GVPTNSGFSTASEAVTFRPYL------TYSLIFINLFIFAMMTLAGGSTNTGVLIMFGAK 177
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+NSLI +G++WRL TS FLH + HL N Y+L ++GP +E++ G RYL +Y SS +
Sbjct: 178 VNSLILQGEYWRLFTSMFLHIGVIHLAFNLYALWALGPILEELFGRIRYLLIYISSGV 235
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 8/94 (8%)
Query: 137 LLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A+N+LVY+A + ++ +GAK+N+LI +G++WR T FLH ++ HL+
Sbjct: 188 LIAINILVYLALVLYERTSGISYGQLIIQFGAKVNNLILEGEYWRFITPIFLHGSLMHLL 247
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VNCYSL IG +E++ G R++ Y + I N
Sbjct: 248 VNCYSLYIIGSLVERLYGRGRFITSYLIAGILGN 281
>gi|168181264|ref|ZP_02615928.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|237793720|ref|YP_002861272.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
gi|182675329|gb|EDT87290.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|229262482|gb|ACQ53515.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
Length = 342
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIAS 221
+YL +YF S I S
Sbjct: 239 VKYLIIYFISGILS 252
>gi|170761626|ref|YP_001785737.1| membrane associated peptidase [Clostridium botulinum A3 str. Loch
Maree]
gi|169408615|gb|ACA57026.1| putative membrane associated peptidase [Clostridium botulinum A3
str. Loch Maree]
Length = 341
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIAS 221
+YL +YF S I S
Sbjct: 239 VKYLIIYFISGILS 252
>gi|168186765|ref|ZP_02621400.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
gi|169295367|gb|EDS77500.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
Length = 202
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 132 QWTNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHAN 183
+ T IL+ +NVLVYI + LL GA N+L+ GQ++RL T FLH
Sbjct: 22 RVTFILITINVLVYIITAILSENILDSDIRVLLFLGANENTLVSSGQYYRLITCMFLHGG 81
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ HL +N Y+L +IGP +E+I G +Y+ +Y + S+ S
Sbjct: 82 LVHLALNMYALEAIGPIVERIYGKMKYIIIYLVGGLISSLS 122
>gi|303275255|ref|XP_003056925.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461277|gb|EEH58570.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 392
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL 165
GG +S G D T+ R T+ LL + Y+ Q T GAK+N+
Sbjct: 151 GGGAGSSSPRGGRRYDGGLTSGDPRRAATDALLWTTAIGYVLQVLTGHAFTAMGAKVNAE 210
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I GQ +RL T LH + HL+VNC SL+++GP +E+ G ++G+Y +S I N
Sbjct: 211 IAAGQVYRLVTPLLLHGSPLHLLVNCMSLHNLGPVIERQFGRDSFVGLYLASGIGGN 267
>gi|187776993|ref|ZP_02993466.1| hypothetical protein CLOSPO_00538 [Clostridium sporogenes ATCC
15579]
gi|187773921|gb|EDU37723.1| peptidase, S54 family [Clostridium sporogenes ATCC 15579]
Length = 344
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAI 219
F S I
Sbjct: 246 FISGI 250
>gi|424826465|ref|ZP_18251350.1| S54 family peptidase [Clostridium sporogenes PA 3679]
gi|365980910|gb|EHN16927.1| S54 family peptidase [Clostridium sporogenes PA 3679]
Length = 343
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAI 219
F S I
Sbjct: 246 FISGI 250
>gi|170756233|ref|YP_001780053.1| membrane associated peptidase [Clostridium botulinum B1 str. Okra]
gi|429244301|ref|ZP_19207768.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
gi|169121445|gb|ACA45281.1| putative membrane associated peptidase [Clostridium botulinum B1
str. Okra]
gi|428758682|gb|EKX81087.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
Length = 341
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 AKYLIIYFISGI 250
>gi|168177744|ref|ZP_02612408.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|387816637|ref|YP_005676981.1| membrane protein [Clostridium botulinum H04402 065]
gi|182671461|gb|EDT83435.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|322804678|emb|CBZ02230.1| conserved membrane protein [Clostridium botulinum H04402 065]
Length = 340
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 VKYLIIYFISGI 250
>gi|153938565|ref|YP_001389769.1| S54 family peptidase [Clostridium botulinum F str. Langeland]
gi|384460841|ref|YP_005673436.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
gi|152934461|gb|ABS39959.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
Langeland]
gi|295317858|gb|ADF98235.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
Length = 340
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 VKYLIIYFISGI 250
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ILL V V VY+ Q ++ D LL GAK N+LI +G+FWRL T FLH ++ H+
Sbjct: 39 TYILLGVTVGVYLLQMLSRPLFGYDLLLAMGAKSNTLIQQGEFWRLITPMFLHVSLPHIA 98
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N Y+L + G ++E+ G RR+L +YF +
Sbjct: 99 FNMYALYAFGVSLERHYGRRRFLLLYFIGGLGG 131
>gi|226947631|ref|YP_002802722.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
gi|226842288|gb|ACO84954.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
Length = 340
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 VKYLIIYFISGI 250
>gi|421836033|ref|ZP_16270628.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
gi|409742181|gb|EKN41685.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
Length = 266
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 VKYLIIYFISGI 250
>gi|392393767|ref|YP_006430369.1| hypothetical protein Desde_2230 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390524845|gb|AFM00576.1| putative membrane protein [Desulfitobacterium dehalogenans ATCC
51507]
Length = 275
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Query: 134 TNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+N++V+ +A +T+ L+L+GAK+N+LI +G++WRL TS FLH HL
Sbjct: 99 TYTLIAINLIVFALMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLA 158
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N Y+L ++GP E++ G RY+ VY S I
Sbjct: 159 FNLYALWALGPIAEELLGRIRYITVYILSGI 189
>gi|422294933|gb|EKU22233.1| hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASN 222
++ ++G +E + GP +YL +Y S +A N
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGN 108
>gi|422293068|gb|EKU20369.1| hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASN 222
++ ++G +E + GP +YL +Y S +A N
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGN 108
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQ---FATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV+V++ TQ+ L+ +GAK+N+LID GQ+WRL TS F+H HL+
Sbjct: 19 TYLLVLINVVVFLVMELAGGTQNPYVLIFFGAKMNTLIDAGQYWRLLTSMFIHIGFTHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y+L +G E++ G R+L +Y S +A +
Sbjct: 79 FNVYALIVLGKLAERLFGHGRFLLIYLFSGLAGS 112
>gi|148378401|ref|YP_001252942.1| membrane associated peptidase [Clostridium botulinum A str. ATCC
3502]
gi|148287885|emb|CAL81951.1| putative membrane associated peptidase [Clostridium botulinum A
str. ATCC 3502]
Length = 337
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S +
Sbjct: 239 VKYLIIYFISGV 250
>gi|325289903|ref|YP_004266084.1| rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965304|gb|ADY56083.1| Rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
Length = 189
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN L +N+LV++ Q L+++GAK+N LID GQ+WRL TS F+H I HL+
Sbjct: 12 TNTFLIMNILVFLVMTLAGGTTNQVVLVIFGAKVNQLIDLGQYWRLLTSIFIHIGIVHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N Y+L ++G E + G ++ +Y S I
Sbjct: 72 LNSYALIAVGQISEAVFGHLKFALLYLLSGIGG 104
>gi|255077864|ref|XP_002502512.1| rhomboid-like protein [Micromonas sp. RCC299]
gi|226517777|gb|ACO63770.1| rhomboid-like protein [Micromonas sp. RCC299]
Length = 336
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ LL Y+ Q + GAK+N+ I +G+ WRL T LH + HLMVN
Sbjct: 115 RALTDALLWATAGGYVLQLLSGHAFTAVGAKVNAKIAQGEVWRLLTPLLLHGSALHLMVN 174
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
C SLN++GP +E+ G +++ VY S + N
Sbjct: 175 CMSLNNLGPVVERQFGREQFMAVYLGSGLLGN 206
>gi|126651489|ref|ZP_01723693.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
gi|126591742|gb|EAZ85838.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
Length = 207
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+++Y+ LLW G + N L+ KG++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLILYVLSLLPGVGTLLWNYGIQANFLVQKGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
GP +EKI G R++ +Y S I N
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGN 108
>gi|147784181|emb|CAN72839.1| hypothetical protein VITISV_008789 [Vitis vinifera]
Length = 246
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 27/79 (34%)
Query: 144 VYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEK 203
V+I Q ATQ KLLLWGAK VNC+SLNS+GPT+E
Sbjct: 80 VFIGQAATQGKLLLWGAK---------------------------VNCFSLNSVGPTVEN 112
Query: 204 ICGPRRYLGVYFSSAIASN 222
+ GPRRYL VYF+SAIAS+
Sbjct: 113 LSGPRRYLAVYFTSAIASS 131
>gi|393199141|ref|YP_006460983.1| membrane protein [Solibacillus silvestris StLB046]
gi|406666244|ref|ZP_11074012.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
gi|327438472|dbj|BAK14837.1| uncharacterized membrane protein [Solibacillus silvestris StLB046]
gi|405385783|gb|EKB45214.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
Length = 207
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
++A+N++V++ ++LL G +N LI G++WR+ TS FLHA H++ N +SL
Sbjct: 21 IIAINLIVFVLTLIPGFGEELLYAGMSVNGLIAAGEWWRIITSMFLHAGFMHVLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAI 219
GP +EKI G R+L +YF + I
Sbjct: 81 FLFGPELEKIAGKMRFLTIYFLAGI 105
>gi|295397321|ref|ZP_06807413.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
gi|294974395|gb|EFG50130.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
Length = 223
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL + ++++I +F + LLL+GAK N LI G++WRL T FLH I HL+
Sbjct: 9 TYTLLGIQIILFIMMEFMGSSESSATLLLFGAKFNPLIAAGEYWRLITPMFLHIGIVHLL 68
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L +G +E I G RYL +Y +S + N
Sbjct: 69 INSITLYYLGSMVENIAGHWRYLVIYLASGLMGN 102
>gi|449017499|dbj|BAM80901.1| unknown rhomboid family protein [Cyanidioschyzon merolae strain
10D]
Length = 458
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T+ L A+ +L ++ Q ++ GAK+N+ I G+++RL T FLH N HL+VN S
Sbjct: 254 TDWLAAITILSFLLQLWAGPAYVMAGAKVNAAIRTGEWYRLFTPLFLHGNTLHLIVNLSS 313
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L S+GP +E G RRY +Y S + N
Sbjct: 314 LKSLGPQIEATYGHRRYAALYLLSGLTGN 342
>gi|381394664|ref|ZP_09920376.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329631|dbj|GAB55509.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 211
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T ++A N+L + QFATQD L G L+ GQ+WR+ +S FLH +I H+ N Y
Sbjct: 11 TLTIMAANILFFAGQFATQDMLTNMGLLYGPLVQDGQYWRMISSGFLHGSILHIAFNMYL 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L +GP +E G R+ +YF + I
Sbjct: 71 LYMLGPQLESALGSVRFSLMYFGALIGGT 99
>gi|451820893|ref|YP_007457094.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786872|gb|AGF57840.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 512
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFA-------TQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+A+N+ +++ +KLL +G+K N+ I +GQ+WR T FLHANI
Sbjct: 185 TYILIALNLFIFVIMGIYSWETGIDYNKLLFEFGSKENTSIIQGQYWRFITPMFLHANIM 244
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ +NCY+L IG E+I G +++ +YF + I N
Sbjct: 245 HVALNCYTLYLIGKLSERIFGKAKFITIYFIAGILGN 281
>gi|150019138|ref|YP_001311392.1| rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
gi|149905603|gb|ABR36436.1| Rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
Length = 328
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 115 EGTSHLDTARTNLFIGRQW-----TNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
EG ++ ++ + W T I++ +N++ ++ LL +G K
Sbjct: 120 EGVLQVNKNKSTYYEKEYWKYKNLTFIIMGINIVTFLLTALLSGNIFNIDYWVLLKYGGK 179
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N LI++GQ+WRL T AFLH + H++ N YSL +GP +++I G +Y +Y S + S
Sbjct: 180 VNELINQGQYWRLLTCAFLHGGLIHIVGNMYSLYILGPEIQQIYGVYKYFIIYIFSCLTS 239
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NVLV+I + L+ +GAK+N+LI GQ+WRL T FLH H++
Sbjct: 8 TYTLLGINVLVFILMTLAGGSQSVGVLVEFGAKVNTLIVAGQWWRLITPMFLHIGFEHIV 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L +G +E I G R+L VY S IA N
Sbjct: 68 LNMITLYFVGIQLENILGRGRFLAVYLVSGIAGN 101
>gi|89894371|ref|YP_517858.1| hypothetical protein DSY1625 [Desulfitobacterium hafniense Y51]
gi|219668797|ref|YP_002459232.1| rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|423073963|ref|ZP_17062698.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
gi|89333819|dbj|BAE83414.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539057|gb|ACL20796.1| Rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|361855174|gb|EHL07168.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
Length = 327
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 134 TNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+N++V+ +A +T+ L+L+GAK+N+LI +G++WRL TS FLH HL
Sbjct: 151 TYTLIAINLIVFGLMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLA 210
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N Y+L ++G E++ G RY+ VY S I
Sbjct: 211 FNLYALWALGAIAEELLGRVRYITVYILSGI 241
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+ +Y+ LLW G + N LI G++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLTLYVLSLIPSIGTLLWNYGIQANFLIQSGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
GP +EKI G R++ +Y S I N +
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGNMA 110
>gi|366053016|ref|ZP_09450738.1| membrane-associated serine protease [Lactobacillus suebicus KCTC
3549]
Length = 223
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 136 ILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
I + V +L+ +A +T ++L+ +GAK+ +LI +GQ+WRL T FLH + HL+VN ++
Sbjct: 19 IQVIVFILMTVAGGSTNTQILIEFGAKVGTLIQEGQWWRLITPVFLHIGLMHLVVNSVTV 78
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
IG +E + G R+L +YF SA+ N
Sbjct: 79 YYIGTQIENMFGHARFLSIYFVSALTGN 106
>gi|23099378|ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831]
gi|22777607|dbj|BAC13879.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 518
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 133 WTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+N+ ++ Q D L+ GAK N LI +G++WRL TS FLH H+
Sbjct: 187 FTYILIALNLFFFLQQINNGGSENIDTLIQMGAKYNPLIMEGEWWRLLTSMFLHIGFVHI 246
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
++N +L +G +E+I G R+L +YF IA
Sbjct: 247 LMNMVALFYLGTAVERIFGRTRFLVIYFLGGIA 279
>gi|153955340|ref|YP_001396105.1| hypothetical protein CKL_2722 [Clostridium kluyveri DSM 555]
gi|219855759|ref|YP_002472881.1| hypothetical protein CKR_2416 [Clostridium kluyveri NBRC 12016]
gi|146348198|gb|EDK34734.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569483|dbj|BAH07467.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 338
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 134 TNILLAVNVLVYIA--------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A+NVLVYI + + L+ GAK+N LI KGQ++RL T FLHA I
Sbjct: 154 TYVIIALNVLVYIVTSYLSGSIMDSNVNVLVFMGAKVNFLIAKGQYYRLFTCMFLHAGIV 213
Query: 186 HLMVNCYSLNSIGPTMEKICGPRR 209
HL VN YSL +G +EK+ G +
Sbjct: 214 HLGVNMYSLYMMGTFIEKVYGKLK 237
>gi|340356603|ref|ZP_08679245.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
gi|339620530|gb|EGQ25099.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
Length = 202
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+N+ ++I + ++LLL+G N LI G++WRL T FLH + HL+ N
Sbjct: 18 VTFLLALNIGIFILTWIPGIGNQLLLFGIGDNFLIANGEYWRLVTPMFLHGGLTHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+SL GP +EKI G R++ +Y + + +
Sbjct: 78 FSLFIFGPELEKIAGKARFITIYMLAGLFGD 108
>gi|309792360|ref|ZP_07686828.1| Rhomboid family protein [Oscillochloris trichoides DG-6]
gi|308225581|gb|EFO79341.1| Rhomboid family protein [Oscillochloris trichoides DG6]
Length = 240
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI G +WRL ++ FLH ++ H++ N Y+L ++GP E+I G RR+L +Y
Sbjct: 45 LVFLGAKVNELIAAGAYWRLLSATFLHGSLIHILFNGYALYALGPETERIYGTRRFLALY 104
Query: 215 FSSAIASN 222
F + + +
Sbjct: 105 FLAGLGGS 112
>gi|335357178|ref|ZP_08549048.1| rhomboid family integral membrane protein [Lactobacillus animalis
KCTC 3501]
Length = 224
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQF---ATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+AVN+LV+I TQ+ L+ WGAK N LI +G+ WRL T F+H + HL +N
Sbjct: 14 LIAVNLLVFIGMTLSGGTQNAVNLIAWGAKYNPLIIQGELWRLFTPMFIHIGLEHLALNL 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +G +E++ G R+L +Y S + N
Sbjct: 74 LTLYFLGVQLEQLFGKWRFLALYLISGVGGN 104
>gi|15894241|ref|NP_347590.1| hypothetical protein CA_C0954 [Clostridium acetobutylicum ATCC 824]
gi|337736171|ref|YP_004635618.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
gi|384457680|ref|YP_005670100.1| hypothetical protein CEA_G0966 [Clostridium acetobutylicum EA 2018]
gi|15023857|gb|AAK78930.1|AE007610_10 Uncharacterized membrane protein [Clostridium acetobutylicum ATCC
824]
gi|325508369|gb|ADZ20005.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291944|gb|AEI33078.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
Length = 328
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 136 ILLAVNVLVYIAQ-------FATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
IL+ +N +VY A +++L GAK + LID GQ++RL T FLHA I H+
Sbjct: 146 ILIVINFIVYGISAWLSGNPVAISNQVLNFMGAKNSVLIDNGQYYRLITCMFLHAGITHI 205
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N YSL S+G +E I G RY +YF S I +
Sbjct: 206 GANMYSLYSMGYMLENIYGKLRYTAIYFISGITA 239
>gi|402572950|ref|YP_006622293.1| hypothetical protein Desmer_2505 [Desulfosporosinus meridiei DSM
13257]
gi|402254147|gb|AFQ44422.1| putative membrane protein [Desulfosporosinus meridiei DSM 13257]
Length = 314
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L +N++V+I Q L+ +GAK+N LI G+ WR TS F+H HL+
Sbjct: 135 TYVLFGINIVVFILMTLAGGSENQSVLIAFGAKVNPLIQAGELWRFLTSVFIHIGFLHLL 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y+L S+GP E+ G R+L +Y S + +
Sbjct: 195 FNLYALWSLGPISERNFGHWRFLVIYIMSGLGGS 228
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
I L + +L+ QF LL +G +N LI +G++WRL T FLHA AH + N +S
Sbjct: 22 VGIHLLLWILIDFLQFGFALDLLRFGIGVNVLILEGEYWRLVTPIFLHAGFAHALFNSFS 81
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L GP +E+I G +++ +Y + I N
Sbjct: 82 LVLFGPALEQILGKFKFIFMYLFAGIVGN 110
>gi|227500934|ref|ZP_03930983.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
gi|227216905|gb|EEI82299.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
Length = 226
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 132 QWTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T L+ VN+ V+I D L+ +GA + L+ GQ+WR+ T+AF+H H
Sbjct: 12 KVTTALMLVNIAVFIIMTLHGGSEDIDNLVRFGAMVKPLVKLGQWWRIFTAAFIHIGFFH 71
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVY---------FSSAIASNNS 224
++ N Y L SIGP EK+ G R +L +Y F+ A ASNN+
Sbjct: 72 ILFNMYFLYSIGPLFEKLYGSRNFLIIYLLAGIMGNLFTYAFASNNT 118
>gi|116495142|ref|YP_806876.1| membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239632021|ref|ZP_04675052.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066706|ref|YP_003788729.1| membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|417980317|ref|ZP_12620997.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|417989935|ref|ZP_12630432.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|417993182|ref|ZP_12633532.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|417996528|ref|ZP_12636807.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|417999394|ref|ZP_12639604.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|418002337|ref|ZP_12642457.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|418008258|ref|ZP_12648126.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|418013147|ref|ZP_12652800.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
gi|116105292|gb|ABJ70434.1| Membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239526486|gb|EEQ65487.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439113|gb|ADK18879.1| Membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|410524640|gb|EKP99547.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|410532094|gb|EKQ06805.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|410535374|gb|EKQ09999.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|410536930|gb|EKQ11516.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|410539414|gb|EKQ13947.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|410544317|gb|EKQ18647.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|410547202|gb|EKQ21440.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|410556094|gb|EKQ30016.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
Length = 227
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN +SL +G E++ G R+ +YF S A N
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGN 110
>gi|410725976|ref|ZP_11364264.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410601611|gb|EKQ56119.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 512
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+A+N+L++ K LL +G+K N I +G++WR FLH NI
Sbjct: 185 TYILIALNLLIFALMGLYSWKSGTDYNTLLLEFGSKENEHILQGEYWRFIAPIFLHVNIV 244
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ +NCYSL +G EKI G +++ +YF++ I N
Sbjct: 245 HVALNCYSLYLVGILAEKIFGKGKFIAIYFAAGILGN 281
>gi|417987040|ref|ZP_12627602.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|418011095|ref|ZP_12650861.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
gi|410524104|gb|EKP99021.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|410552732|gb|EKQ26746.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
Length = 227
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLITPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN +SL +G E++ G R+ +YF S A N
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGN 110
>gi|354557489|ref|ZP_08976747.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550283|gb|EHC19720.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 325
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKG 169
E + + RTN F+ T IL A+N++V+ +A +T K L+L+GAK+N LI +G
Sbjct: 133 ERDKYFEFFRTNKFVPYV-TIILAAINIIVFSLMTLAGGSTNTKNLILFGAKVNELILQG 191
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q WRL TS F+H HL N Y+L +G E+ G R+L +Y S +A +
Sbjct: 192 QVWRLFTSMFIHIGFLHLAFNIYALWILGSFSEERFGRWRFLFIYLLSGLAGS 244
>gi|404370657|ref|ZP_10975977.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
gi|226913215|gb|EEH98416.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI+ G+ +RL TSAFLH I H+ N +LN IG +E + G +RY+ +Y
Sbjct: 168 LIQMGAKVNVLINSGEIYRLLTSAFLHGGIIHIFFNMSALNIIGREVEAVYGSKRYIAIY 227
Query: 215 FSSAIA 220
SA+
Sbjct: 228 VISALG 233
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYI-AQFATQDK-------LLLWGAKINSLIDKGQFWRLA 175
+ NLF Q T+I++ +N+++++ + + D L+ GAK+NS I G+F+RL
Sbjct: 130 KNNLFSSNQITSIIIFLNIVIFLYSSYINGDIFDINTLILVQLGAKVNSYIINGEFYRLL 189
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
T FLH+ + H+ N Y+LN+IG +E++ G ++++ +Y
Sbjct: 190 TCTFLHSGLMHIAFNMYALNNIGRLIERVYGWKKFILIY 228
>gi|227534843|ref|ZP_03964892.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187599|gb|EEI67666.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 282
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 72 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 131
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN +SL +G E++ G R+ +YF S A N
Sbjct: 132 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGN 165
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LLAVNV +++ A +T + L+ +GAK N I +G++WRL TS FLH + HLM
Sbjct: 184 TYLLLAVNVALFLLLEWAGGSTNVETLIEYGAKFNPAIMEGEWWRLVTSMFLHIGLIHLM 243
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+N +L IG +E+I G RY+ +Y + +
Sbjct: 244 MNMLALYYIGTAVERIYGSWRYIIIYLLAGV 274
>gi|300853810|ref|YP_003778794.1| membrane-associated protein [Clostridium ljungdahlii DSM 13528]
gi|300433925|gb|ADK13692.1| putative membrane-associated protein [Clostridium ljungdahlii DSM
13528]
Length = 337
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Query: 136 ILLAVNVLVYIAQ-------FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHL 187
I++A+NV VY F + +L++ GAK+NSLI G+++RL T FLHA I HL
Sbjct: 155 IIIALNVAVYTVTAYLSGNIFDSNINVLVFMGAKVNSLIASGEYYRLFTCMFLHAGIVHL 214
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
VN YSL +G +EK+ G +Y+ +Y S +
Sbjct: 215 GVNMYSLYIMGSFVEKVYGKVKYIVMYLISGL 246
>gi|374581478|ref|ZP_09654572.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
gi|374417560|gb|EHQ89995.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
Length = 313
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I+++VN++VY+ A +T ++L+ +GAK+NSLI G+ WR TS F+H HL+
Sbjct: 136 TYIIISVNLIVYLLMTLAGGSTDQRVLIEFGAKVNSLIQAGEIWRFFTSMFIHIGFMHLI 195
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y+ S+GP +E+ G R+ +Y S + +
Sbjct: 196 FNLYAFWSLGPFIEERFGHWRFFTIYSLSGLGGS 229
>gi|339480868|ref|ZP_08656527.1| membrane-associated serine protease [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 230
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQF----ATQDK---LLLWGAKINSLI-DKGQFWRLATSAFLHANIA 185
T ILL V ++V++ + T D L+ GAK I D Q+WRL T FLHA
Sbjct: 17 TTILLTVTIVVFVIELVVSGGTTDNSYFLVQVGAKWGPYIKDDSQYWRLITPIFLHAGFM 76
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N +L IGP E G R++LG+YF S I+ N
Sbjct: 77 HIVTNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGN 113
>gi|336114379|ref|YP_004569146.1| rhomboid family protein [Bacillus coagulans 2-6]
gi|335367809|gb|AEH53760.1| Rhomboid family protein [Bacillus coagulans 2-6]
Length = 355
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LAV + V+I T L+ +GAK N LI +GQ+WRL F+H I HL
Sbjct: 148 FTYVFLAVQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLIMPVFIHIGIMHL 207
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVY----FSSAIAS 221
+N SL IGP +E+I G R+ +Y F+ +AS
Sbjct: 208 FMNSLSLYYIGPLVERIYGKARFALIYLFAGFTGCLAS 245
>gi|323450009|gb|EGB05893.1| hypothetical protein AURANDRAFT_9027 [Aureococcus anophagefferens]
Length = 77
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q +LL G K LI GQ+WRLAT LHA+ AHL+VN SL ++G ++E+ G ++ L
Sbjct: 4 QPQLLTLGCKSAPLIGAGQWWRLATPMLLHASPAHLIVNMISLRNVGRSLERAYGAKKTL 63
Query: 212 GVYFSSAIASN 222
VY +S IA N
Sbjct: 64 VVYVASGIAGN 74
>gi|82703577|ref|YP_413143.1| rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
gi|82411642|gb|ABB75751.1| Rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
Length = 371
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L++ N+L+++A A+ L L WGA G++WRL T+ FLH +
Sbjct: 18 TKLLVSTNLLIFVAMLASGAGLWHSSNGVQLAWGANFGPATQDGEWWRLGTAMFLHFGLV 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N ++L G +E++ G R+ +YF+S +A N
Sbjct: 78 HLTLNLWALWDAGQLVERMYGHARFTALYFASGLAGN 114
>gi|412988740|emb|CCO15331.1| Rhomboid family protein [Bathycoccus prasinos]
Length = 249
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T+ LL + Y Q T+ K AK+N + GQ++RL TSAFLH + HL VN
Sbjct: 73 RKATDALLLSLLAGYSLQLLTRQKATAAFAKVNENVSNGQYYRLLTSAFLHGGLVHLFVN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
YS+N+IG +E+I G + SA++ N
Sbjct: 133 MYSVNAIGSAVERIFGKTHTYAAFTLSALSGN 164
>gi|125973563|ref|YP_001037473.1| rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|256003382|ref|ZP_05428373.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281417768|ref|ZP_06248788.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|385778515|ref|YP_005687680.1| rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|419723657|ref|ZP_14250772.1| Rhomboid family protein [Clostridium thermocellum AD2]
gi|419724518|ref|ZP_14251580.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|125713788|gb|ABN52280.1| Rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|255992672|gb|EEU02763.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281409170|gb|EFB39428.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|316940195|gb|ADU74229.1| Rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|380772065|gb|EIC05923.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|380780339|gb|EIC10022.1| Rhomboid family protein [Clostridium thermocellum AD2]
Length = 511
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 9/98 (9%)
Query: 131 RQW-TNILLAVNVLVY--IAQFA------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
+ W T +L+AVN+LV+ I +A + L+ +GAK N+ I G++WR T FLH
Sbjct: 178 KPWVTYVLIAVNILVWLLIEIYARSKGVDSSSLLVDFGAKENTHIMMGEYWRFVTPMFLH 237
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
I HL+VN YSL +G T+E I G R+L +Y + +
Sbjct: 238 NGITHLVVNSYSLYVLGTTVEMIMGKGRFLFIYLMAGL 275
>gi|14520881|ref|NP_126356.1| hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
gi|5458098|emb|CAB49587.1| Membrane protein, rhomboid protein homolog [Pyrococcus abyssi GE5]
gi|380741425|tpe|CCE70059.1| TPA: hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
Length = 212
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
I+ AV + I F D+ +L A+IN L+ +GQ+WRL T+ FLH H +N + L
Sbjct: 34 IITAVFIYEVIVGF---DRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLF 90
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +E I G +R+L V+F+SA+A N
Sbjct: 91 YLGTDLEGIVGTKRFLIVFFASALAGN 117
>gi|302758242|ref|XP_002962544.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
gi|300169405|gb|EFJ36007.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
Length = 1043
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ H+ + ++L S GP +E + GP + +Y I N
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGN 737
>gi|302758654|ref|XP_002962750.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
gi|300169611|gb|EFJ36213.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
Length = 1043
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ H+ + ++L S GP +E + GP + +Y I N
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGN 737
>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]
Length = 468
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL---------LLWGAKINS 164
H+ S +D+ + IL +VN+ V++ + A+ + LL+GAKIN
Sbjct: 230 HDPRSAIDSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINH 289
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A N
Sbjct: 290 LIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACN 347
>gi|191638648|ref|YP_001987814.1| S54 family peptidase [Lactobacillus casei BL23]
gi|385820364|ref|YP_005856751.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|418005386|ref|ZP_12645379.1| GlpG family membrane protein [Lactobacillus casei UW1]
gi|190712950|emb|CAQ66956.1| S54 family peptidase [Lactobacillus casei BL23]
gi|327382691|gb|AEA54167.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|410546783|gb|EKQ21027.1| GlpG family membrane protein [Lactobacillus casei UW1]
Length = 227
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN +SL +G E++ G R+ +YF S A N
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGN 110
>gi|392426192|ref|YP_006467186.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
gi|391356155|gb|AFM41854.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
Length = 322
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T + +N+LV++ QD L+ +GAK+NSLI GQ WRL TS F+H HL
Sbjct: 135 TYAFIGINLLVFLLMTLAGGSENQDVLIAFGAKVNSLIQAGQVWRLLTSMFIHIGYFHLA 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N Y+L ++GP E G +Y +Y S +
Sbjct: 195 FNLYALWALGPLTELSYGHGKYFAIYMLSGLGG 227
>gi|118442959|ref|YP_877647.1| rhomboid family membrane protein [Clostridium novyi NT]
gi|118133415|gb|ABK60459.1| conserved membrane protein (rhomboid family) [Clostridium novyi NT]
Length = 202
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GA N+L+ G+++RL T FLH + HL+ N Y+L +IGP +E+I G +Y+ +Y
Sbjct: 53 LLFLGANENTLVSNGEYYRLFTCMFLHGGLIHLLANMYALGAIGPIVERIYGKVKYIIIY 112
Query: 215 FSSAIASN 222
I S+
Sbjct: 113 LVGGIISS 120
>gi|409997508|ref|YP_006751909.1| S54 family peptidase [Lactobacillus casei W56]
gi|406358520|emb|CCK22790.1| S54 family peptidase [Lactobacillus casei W56]
Length = 285
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 75 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 134
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN +SL +G E++ G R+ +YF S A N
Sbjct: 135 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGN 168
>gi|366085766|ref|ZP_09452251.1| membrane-associated serine protease [Lactobacillus zeae KCTC 3804]
Length = 229
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNTEVLIAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +SL +G E++ G R+ +YF S A N
Sbjct: 77 MNGFSLYFLGEMTERLFGHWRFFLLYFISGFAGN 110
>gi|422874373|ref|ZP_16920858.1| rhomboid family protein [Clostridium perfringens F262]
gi|380304681|gb|EIA16968.1| rhomboid family protein [Clostridium perfringens F262]
Length = 342
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 17/106 (16%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ + ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVANALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I ++
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVAS 254
>gi|297539145|ref|YP_003674914.1| Rhomboid family protein [Methylotenera versatilis 301]
gi|297258492|gb|ADI30337.1| Rhomboid family protein [Methylotenera versatilis 301]
Length = 346
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A N+LV++A L WGA G++WRL T+ FLH I
Sbjct: 18 TKLIIAANILVFVAMLVKGAGFWHSPNAIQLAWGANFGPATQDGEWWRLGTAMFLHFGII 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+VN +SL G +E++ G R+ G+Y S + N
Sbjct: 78 HLLVNVWSLWDAGQLVERMYGHLRFAGIYVLSGLTGN 114
>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]
Length = 503
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKI 162
S + H++T+ L IL +VN+ V++ + A+ + LL+GAKI
Sbjct: 234 SAIDSQQHVETSSLYLI------GILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKI 287
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A N
Sbjct: 288 NHLIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACN 347
>gi|347753198|ref|YP_004860763.1| Rhomboid family protein [Bacillus coagulans 36D1]
gi|347585716|gb|AEP01983.1| Rhomboid family protein [Bacillus coagulans 36D1]
Length = 377
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LA+ + V+I T L+ +GAK N LI +GQ+WRL T F+H HL
Sbjct: 174 FTYVFLALQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLITPVFIHIGFMHL 233
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVY----FSSAIAS 221
+N SL IGP +E+I G R+ +Y F+ +AS
Sbjct: 234 FMNSLSLYYIGPLVERIYGKGRFALIYLFAGFTGCLAS 271
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 17/106 (16%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ K+L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPKILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S FLH+ I HL+ N Y+L +G +E+I G ++YL +YF S I ++
Sbjct: 209 SMFLHSGIVHLLFNMYALYILGDFIERIYGAKKYLVIYFVSGIVAS 254
>gi|374297549|ref|YP_005047740.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827043|gb|AEV69816.1| putative membrane protein [Clostridium clariflavum DSM 19732]
Length = 517
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 108 TRKNSGHEGTSHLDTARTNLFI--GRQWTNIL--LAVNVLVYIAQFATQDKLLLWGAKIN 163
K S H +D FI G N+L L +N+ + Q + +GAK N
Sbjct: 168 AEKESNHPSARFIDKVP---FITYGLIIINVLMWLVMNIYALVKGTNVQSLFIPFGAKEN 224
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
SLI G++WR T FLHA++ HL++NC SL G +E + G ++++ +YF + I
Sbjct: 225 SLIFAGEYWRFLTPIFLHADLEHLIMNCLSLFVFGRIVEGMYGHKKFVFIYFMAGI 280
>gi|384251749|gb|EIE25226.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 278
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 104 NGGGTRKNSG---HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT--------Q 152
+GGG+ + +G G++ D ++ LL +N+ VY A A
Sbjct: 52 DGGGSYQRTGAPMKAGSNKFDIPAVKPYLAYA----LLFLNLAVYGAGIAVALTQGNDAS 107
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++ L AK+N + G+F+RL T FLHA I HL +NC++L SIGP +E + G +
Sbjct: 108 NEWFLSLAKVNEKVASGEFYRLLTCTFLHAGILHLGLNCWALYSIGPEVEGVMGYSTFAA 167
Query: 213 VYFSSAIASNNS 224
+Y S +A + +
Sbjct: 168 IYVLSGLAGSTA 179
>gi|417983680|ref|ZP_12624316.1| GlpG family membrane protein [Lactobacillus casei 21/1]
gi|410527949|gb|EKQ02811.1| GlpG family membrane protein [Lactobacillus casei 21/1]
Length = 227
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV + V++ + + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTISVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN +SL +G E++ G R+ +YF S A N
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGN 110
>gi|317127070|ref|YP_004093352.1| rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
gi|315472018|gb|ADU28621.1| Rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 132 QWTNILLAVNVLVY--IAQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+ +L+A+N+++Y ++ + L+ +G N I G+ WR+ T FLH +I HL
Sbjct: 16 KLVTVLIAINLVIYFWMSMYPKLGGQLIEAYGVGSNYHIAMGELWRIVTPIFLHGSIMHL 75
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ NC+SL GP +EK+ G + L YF++ I +N
Sbjct: 76 LFNCFSLFLFGPALEKMLGKGKLLIAYFATGILAN 110
>gi|397612848|gb|EJK61912.1| hypothetical protein THAOC_17510, partial [Thalassiosira oceanica]
Length = 434
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLN 195
+ VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL
Sbjct: 222 IFLVNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVANSYSLK 280
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
S+G +E GP R L Y S +A N
Sbjct: 281 SMGNNVEGAFGPARTLATYLVSGVAGN 307
>gi|182627147|ref|ZP_02954861.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
gi|177907465|gb|EDT70134.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
Length = 342
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I ++
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVAS 254
>gi|408790096|ref|ZP_11201729.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
gi|408520670|gb|EKK20705.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
Length = 222
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ N LI GQ+WRL T FLH + HL++NC +L +G +EK G RYL ++
Sbjct: 41 LLRYGAQSNPLIQAGQWWRLVTPIFLHIGLQHLLLNCLTLFYVGNLLEKTVGHFRYLVLF 100
Query: 215 FSSAIASN 222
S I N
Sbjct: 101 LGSGIGGN 108
>gi|14591283|ref|NP_143361.1| hypothetical protein PH1497 [Pyrococcus horikoshii OT3]
gi|3257922|dbj|BAA30605.1| 197aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 197
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
L+ + LV+I + D+ + A+IN L+ GQ+WRL T+ FLH H +N + L
Sbjct: 16 LIILTTLVFIYELVVGFDRAIQELAQINGLVTLGQWWRLITAIFLHMGFIHFGLNIFWLF 75
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +E I G RR+L V+F+SA+ N
Sbjct: 76 YLGIDLEGIVGTRRFLTVFFASALVGN 102
>gi|168214465|ref|ZP_02640090.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|168216839|ref|ZP_02642464.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|422346116|ref|ZP_16427030.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
gi|170714094|gb|EDT26276.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|182381088|gb|EDT78567.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|373226738|gb|EHP49060.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
Length = 342
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I ++
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVAS 254
>gi|110799144|ref|YP_696141.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|168206356|ref|ZP_02632361.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
gi|169347261|ref|ZP_02866200.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|110673791|gb|ABG82778.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|169296657|gb|EDS78788.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|170662212|gb|EDT14895.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
Length = 342
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I ++
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVAS 254
>gi|229916284|ref|YP_002884930.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229467713|gb|ACQ69485.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 350
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI++G++WRL T FLH H +N ++L S+GP +E++ G R+L
Sbjct: 169 NTLVAFGAKVNPLIEQGEWWRLITPMFLHIGWFHFAINMFALWSLGPLVERMYGSIRFLI 228
Query: 213 VYFSSAIASNNS 224
+Y S I + ++
Sbjct: 229 IYLLSGILATSA 240
>gi|168210042|ref|ZP_02635667.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
gi|170711841|gb|EDT24023.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
Length = 342
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I ++
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVAS 254
>gi|169829737|ref|YP_001699895.1| hypothetical protein Bsph_4306 [Lysinibacillus sphaericus C3-41]
gi|168994225|gb|ACA41765.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 167
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+G + N LI KG++WR+ ++ FLHA H+ N +SL GP +EKI G R++ +Y S
Sbjct: 4 YGIQANFLIQKGEWWRVFSAMFLHAGFMHMFFNTFSLYLFGPELEKIAGKARFITIYLVS 63
Query: 218 AIASN 222
I N
Sbjct: 64 GIVGN 68
>gi|157692984|ref|YP_001487446.1| peptidase [Bacillus pumilus SAFR-032]
gi|157681742|gb|ABV62886.1| S54 family peptidase [Bacillus pumilus SAFR-032]
Length = 512
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T +L+AV V++++ L +GAK N LI +G++WRL T FLH + HL
Sbjct: 184 FTYLLIAVQVVMFLLLELFGGSTNTATLTAFGAKNNGLILEGEWWRLMTPMFLHIGLTHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ N ++L S+G +E+I G R+L +YF S I
Sbjct: 244 LFNTFALWSVGAAVERIYGSWRFLLIYFISGI 275
>gi|18310434|ref|NP_562368.1| rhomboid family protein [Clostridium perfringens str. 13]
gi|18145114|dbj|BAB81158.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 342
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I ++
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVAS 254
>gi|399889571|ref|ZP_10775448.1| hypothetical protein CarbS_13682 [Clostridium arbusti SL206]
Length = 323
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 137 LLAVNVLVYIAQ-------FATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++A+N++VY+ F ++L GAK N+LI+ G+++RL T FLH+ I H+
Sbjct: 142 IIAINIVVYVISAILSSNFFDIDIRVLDFLGAKDNTLINSGEYYRLFTCMFLHSGIVHIA 201
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N YSL SIG +E I G ++Y+ +Y S + +
Sbjct: 202 SNMYSLYSIGGLVESIFGRKKYIIMYLLSGLIA 234
>gi|452991452|emb|CCQ97320.1| putative Rhomboid protease [Clostridium ultunense Esp]
Length = 400
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI---AQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
WT +L+A+N+LV++ +Q + L+ +GAK N I G++WRL TS FLH+ H+
Sbjct: 194 WTYVLVAINLLVFLWLTVNGGSQNPETLIRFGAKYNPAIKAGEWWRLITSIFLHSGFFHV 253
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+N +L +G +E++ G R+L +YF + +
Sbjct: 254 ALNSIALYYLGLLVERMYGRARFLLIYFMAGL 285
>gi|415886173|ref|ZP_11547996.1| serine peptidase [Bacillus methanolicus MGA3]
gi|387588826|gb|EIJ81147.1| serine peptidase [Bacillus methanolicus MGA3]
Length = 199
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I G++WRL T LH+ +H++ N +SL GP +E+I G ++++ +YFSS I
Sbjct: 47 AGVNLYIAAGEYWRLVTPIVLHSGFSHMLFNSFSLVLFGPALERIIGKKKFMILYFSSGI 106
Query: 220 ASN 222
A+N
Sbjct: 107 AAN 109
>gi|321311972|ref|YP_004204259.1| membrane endopeptidase [Bacillus subtilis BSn5]
gi|320018246|gb|ADV93232.1| membrane endopeptidase [Bacillus subtilis BSn5]
Length = 507
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G RR+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSRRFLL 263
Query: 213 VYFSSAI 219
+Y ++ I
Sbjct: 264 IYLAAGI 270
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG +N + G++WRL T FLHA AH + N +SL GP +E++ G +++ +Y +
Sbjct: 46 WGMGVNVFVLNGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKVKFIALYLFA 105
Query: 218 AIASN 222
IA N
Sbjct: 106 GIAGN 110
>gi|336234689|ref|YP_004587305.1| rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
gi|335361544|gb|AEH47224.1| Rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
Length = 389
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+N ++L +G T+E++ G R+ +YF++
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAG 275
>gi|397576168|gb|EJK50102.1| hypothetical protein THAOC_30966 [Thalassiosira oceanica]
Length = 527
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLN 195
+ VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL
Sbjct: 211 IFLVNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVSNSYSLK 269
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
S+G +E GP R L Y S +A N
Sbjct: 270 SMGNNVEGAFGPARTLATYLVSGVAGN 296
>gi|387927974|ref|ZP_10130652.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
gi|387587560|gb|EIJ79882.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
Length = 201
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWG-AKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+I++ +NVL+Y ++LL A IN I +G++WRL T LH+ H++ N
Sbjct: 18 VSIIVGLNVLLYFFTILPIFPNRLLFEKLAGINLYIAEGEYWRLVTPILLHSGFPHMLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+SL GP +E+I G +++ +YFS+ IA+N
Sbjct: 78 SFSLILFGPALERIIGKNKFVILYFSTGIAAN 109
>gi|312110225|ref|YP_003988541.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
gi|311215326|gb|ADP73930.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
Length = 389
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+N ++L +G T+E++ G R+ +YF++
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAG 275
>gi|423719255|ref|ZP_17693437.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383368158|gb|EID45433.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 389
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWNGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+N ++L +G T+E++ G R+ +YF++
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAG 275
>gi|345857374|ref|ZP_08809813.1| rhomboid family protein [Desulfosporosinus sp. OT]
gi|344329492|gb|EGW40831.1| rhomboid family protein [Desulfosporosinus sp. OT]
Length = 328
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ +GAK+N LI G+ WRL TS F+H I HL N Y+L ++GP E+ G ++L
Sbjct: 168 QRVLIAFGAKVNDLIQAGEVWRLLTSIFIHIGIIHLAFNLYALRALGPLTEEFFGHPKFL 227
Query: 212 GVYFSSAIASN 222
+Y S + +
Sbjct: 228 MIYMFSGLGGS 238
>gi|381208752|ref|ZP_09915823.1| hypothetical protein LGrbi_02305 [Lentibacillus sp. Grbi]
Length = 252
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG IN I +GQ+WRL TS FLHA + H++ N ++L GP +E++ G +++ Y +
Sbjct: 47 WGMGINFAISQGQYWRLITSIFLHAGLMHVLFNSFALVLFGPALEQMLGKVKFITAYLGA 106
Query: 218 AIASN 222
+ N
Sbjct: 107 GLIGN 111
>gi|374374022|ref|ZP_09631681.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
gi|373233464|gb|EHP53258.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
Length = 490
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I + LL WGA + +GQ+WRL T+ FLH I
Sbjct: 156 TPILIDLNILVFILMTISGVNILMPDNESLLNWGANFRPITLEGQWWRLLTNCFLHVGIF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL++N Y+L IG +E + G R++ Y + I ++
Sbjct: 216 HLLLNMYALLYIGVLLEPLLGRTRFISAYLLTGITAS 252
>gi|331268929|ref|YP_004395421.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
gi|329125479|gb|AEB75424.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
Length = 335
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK N+LI GQ++RL T FLH + HL++N Y+L ++GP +EK G +Y+ +Y
Sbjct: 181 LIFLGAKENTLIASGQYYRLITCMFLHGGLMHLILNMYALKALGPMIEKSYGKMKYVIIY 240
Query: 215 FSSAI 219
+
Sbjct: 241 LVGGL 245
>gi|156741085|ref|YP_001431214.1| rhomboid family protein [Roseiflexus castenholzii DSM 13941]
gi|156232413|gb|ABU57196.1| Rhomboid family protein [Roseiflexus castenholzii DSM 13941]
Length = 281
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWT-NILLAVNVLVYI-------------AQFATQDKLLL 157
+G E + R LF W +LL +N++V++ + D LL+
Sbjct: 30 AGPEPSPAAVQVRFPLF--TPWVARVLLTINIIVFVVPSFLDVIGVRIAGTVSVYDFLLI 87
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGAK N+ I GQ++R T+ FLH +AHL N ++L S+G E++ G +R+L +Y
Sbjct: 88 WGAKDNAAIFVGGQYYRFLTAMFLHGGLAHLFFNSFALYSLGFETERLFGAQRFLAIYML 147
Query: 217 SAIASN 222
+ +
Sbjct: 148 AGLGGG 153
>gi|157363715|ref|YP_001470482.1| rhomboid family protein [Thermotoga lettingae TMO]
gi|157314319|gb|ABV33418.1| Rhomboid family protein [Thermotoga lettingae TMO]
Length = 228
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T+I+LAVNVL+ I F +Q L + +GA+ L+ G+++RL T+ F+H +
Sbjct: 7 THIILAVNVLIAIVMFFAGNLSAFRSQTYLFIRFGAQYGPLVSDGEWYRLITAIFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ N Y+L G +E + GP +++ Y ++ + N
Sbjct: 67 LHLLFNSYALFYFGTIVESVYGPEKFIFSYLATGVVGN 104
>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis]
gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]
Length = 429
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T+IL+++N+ V++ + A+ + LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 178 TSILVSINIAVFLFELASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGV 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ + C+SL + GP + + G ++ ++ I+ N
Sbjct: 238 FHMALGCWSLLTFGPQVSRGYGSFTFVLIFILGGISGN 275
>gi|365851709|ref|ZP_09392132.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
gi|363716222|gb|EHL99633.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
Length = 211
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVY-IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LL + V+VY I F+ + LL +GAK N LI G++WRL + F+H H+++N
Sbjct: 5 LLGIMVIVYVIMTFSGGTENTTTLLTFGAKFNPLIRAGEYWRLVSPIFIHIGFTHILMNG 64
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L IG +E + G R+LG++ +S I N
Sbjct: 65 ITLYFIGQYVEMLFGHWRFLGIFLTSGIVGN 95
>gi|429764176|ref|ZP_19296501.1| peptidase, S54 family [Clostridium celatum DSM 1785]
gi|429188574|gb|EKY29452.1| peptidase, S54 family [Clostridium celatum DSM 1785]
Length = 324
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L++ GAK+N LI+ GQ WRL T FLH +AH+ N Y+L IG +E G +Y+ +Y
Sbjct: 169 LVIMGAKVNELINHGQVWRLITCTFLHGGLAHIAFNMYALKIIGSEVEFAYGKIKYILIY 228
Query: 215 FSSAIA 220
SA+
Sbjct: 229 LFSALG 234
>gi|163846340|ref|YP_001634384.1| rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222524105|ref|YP_002568576.1| rhomboid family protein [Chloroflexus sp. Y-400-fl]
gi|163667629|gb|ABY33995.1| Rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222447984|gb|ACM52250.1| Rhomboid family protein [Chloroflexus sp. Y-400-fl]
Length = 271
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GAKIN I G+ WRL T+ FLHAN+ H+ N Y+L+ +GP E+ G R+L +Y S
Sbjct: 80 GAKINERIADGELWRLLTAVFLHANLIHIFFNGYALSVLGPETERFYGHGRFLALYLISG 139
Query: 219 IASN 222
+ +
Sbjct: 140 LGGS 143
>gi|357128745|ref|XP_003566030.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 267
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHL-----------MVNCYSLNSIGPTMEKICGPRRYL 211
N+LI KGQ WRLATS LH + HL +VN SL +GP +E+ GPRR+L
Sbjct: 81 NALIKKGQIWRLATSCLLHGGLIHLAVRVSASVDIAVVNNVSLREVGPEVEEATGPRRFL 140
Query: 212 GVYFSSAIASN 222
+Y +SA+ +
Sbjct: 141 AIYCTSAVTGS 151
>gi|199597186|ref|ZP_03210618.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|258508700|ref|YP_003171451.1| membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|385828361|ref|YP_005866133.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|199591990|gb|EDZ00065.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|257148627|emb|CAR87600.1| Membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|259650006|dbj|BAI42168.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 229
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +SL +G E++ G R+ +YF + A N
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGN 110
>gi|336395216|ref|ZP_08576615.1| membrane-associated serine protease [Lactobacillus farciminis KCTC
3681]
Length = 225
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQF---ATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V V++ + +Q+ L L +GAK N L+ +GQ+WRL T FLH I H+++N
Sbjct: 16 LLAITVAVFLLETISGGSQNLLTLIHFGAKTNYLVQEGQWWRLITPIFLHIGIFHILMNG 75
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +G +E + G R+L VY S I N
Sbjct: 76 FTLLYVGQILEPMIGHWRFLIVYMLSGIMGN 106
>gi|418070876|ref|ZP_12708151.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|423078786|ref|ZP_17067463.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
gi|357540296|gb|EHJ24313.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|357549074|gb|EHJ30922.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
Length = 229
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +SL +G E++ G R+ +YF + A N
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGN 110
>gi|253682458|ref|ZP_04863255.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
gi|253562170|gb|EES91622.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
Length = 200
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 F 215
Sbjct: 106 L 106
>gi|229552508|ref|ZP_04441233.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|258539881|ref|YP_003174380.1| membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|385835529|ref|YP_005873303.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314060|gb|EEN80033.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|257151557|emb|CAR90529.1| Membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|355395020|gb|AER64450.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
Length = 229
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +SL +G E++ G R+ +YF + A N
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGN 110
>gi|416361193|ref|ZP_11682501.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
gi|338194390|gb|EGO86853.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
Length = 200
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 F 215
Sbjct: 106 L 106
>gi|386714819|ref|YP_006181142.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384074375|emb|CCG45868.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 510
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 132 QWTNILLAVNVLVYI---AQFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
Q T ILLAVN+L+++ +Q +T L+ +GAK N I +G++WR+ +S FLH + H
Sbjct: 183 QMTYILLAVNILLFMFVESQGSTTSVSTLIEFGAKYNPAIMEGEWWRIGSSMFLHIGLLH 242
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
L++N +L IG +E+I G R+ +Y + I
Sbjct: 243 LLMNMLALYYIGIAVERIYGTWRFSVIYLLAGI 275
>gi|421768840|ref|ZP_16205550.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|421771007|ref|ZP_16207668.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
gi|411185689|gb|EKS52816.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|411186442|gb|EKS53566.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
Length = 229
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANLLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +SL +G E++ G R+ +YF + A N
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGN 110
>gi|407980349|ref|ZP_11161140.1| peptidase [Bacillus sp. HYC-10]
gi|407412941|gb|EKF34690.1| peptidase [Bacillus sp. HYC-10]
Length = 512
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T +L+AV V++++ L +GAK N LI +G++WRL T FLH + HL
Sbjct: 184 FTYLLIAVQVVMFLLLELSGGSTNTATLTAFGAKNNVLILEGEWWRLVTPMFLHIGLTHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ N ++L S+G +E+I G R+L +Y S I
Sbjct: 244 LFNTFALWSVGAAVERIYGSGRFLLIYLISGI 275
>gi|335041089|ref|ZP_08534206.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179066|gb|EGL81714.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 577
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 130 GRQWTNI-LLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
G+ + I L +NV ++ + L+ +GAK N LI +G++WRL T FLH
Sbjct: 202 GKPYLTISFLVINVFIFMFLEWVGSSTDPQTLITYGAKWNPLIIEGEYWRLVTPMFLHIG 261
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
I HLM N +L +G +E+I G R+L +Y + I+
Sbjct: 262 IWHLMFNSLALYFLGGAVERIFGSFRFLWIYMFAGISG 299
>gi|148657883|ref|YP_001278088.1| rhomboid family protein [Roseiflexus sp. RS-1]
gi|148569993|gb|ABQ92138.1| Rhomboid family protein [Roseiflexus sp. RS-1]
Length = 283
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 136 ILLAVNVLVYIAQF-------------ATQDKLLLWGAKINSLID-KGQFWRLATSAFLH 181
ILL +N+LV++ + + + L+WGAK N+ I GQ++R T+ FLH
Sbjct: 50 ILLTINILVFVGPWLLDVIGIRIAGVVSVYELTLIWGAKENAAISIGGQYYRFLTAMFLH 109
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+IAHL N ++L S+G E+I G +R+L +Y + +
Sbjct: 110 GSIAHLFFNSFALYSLGFEAERIFGSQRFLALYLIAGLGGG 150
>gi|399516625|ref|ZP_10758222.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
gi|398648534|emb|CCJ66249.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
Length = 227
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQF----ATQDK---LLLWGAKINSLI-DKGQFWRLATSAFLHANIA 185
T ILL V V+V++ + T D L+ GAK I Q+WRL T FLHA
Sbjct: 14 TTILLTVTVVVFLIELVVSGGTTDNSYFLVQVGAKWGPYIKGDSQYWRLITPIFLHAGFM 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ N +L IGP E G R++LG+YF S I+ N
Sbjct: 74 HIATNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGN 110
>gi|408355704|ref|YP_006844235.1| peptidase S54 family protein [Amphibacillus xylanus NBRC 15112]
gi|407726475|dbj|BAM46473.1| peptidase S54 family protein [Amphibacillus xylanus NBRC 15112]
Length = 254
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFATQ--DKLL-LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMVNC 191
+LA+N+++++ + KL+ +WG N+ I+ G++WRL T FLHA + H++ N
Sbjct: 21 ILAINIILWLLMYFPNPIGKLIWIWGVGWNTGIEIGEYWRLVTPIFLHAPNEVTHILFNS 80
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+SL GP +E++ G +++ VY + I N
Sbjct: 81 FSLILFGPALEQMIGKFKFIFVYLFTGIVGN 111
>gi|366089319|ref|ZP_09455792.1| membrane-associated serine protease [Lactobacillus acidipiscis KCTC
13900]
Length = 217
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N++VY+ + L+ +GAK+N LI +G++WRL T F+H + H++
Sbjct: 10 TYFLIIINIIVYLLMTVAGGSENTNVLVFFGAKVNQLIGQGEWWRLFTPMFIHIGLQHIV 69
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L IG +E + G R++ +Y S + N
Sbjct: 70 LNMVTLYFIGIQIEAVFGKWRFVILYLISGLGGN 103
>gi|403385795|ref|ZP_10927852.1| hypothetical protein KJC30_13905 [Kurthia sp. JC30]
Length = 206
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 137 LLAVNVLVYIAQFA--TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+ +N++VY+ + +GA N LI G++WRL T+ F+H H++ N + L
Sbjct: 21 LILINLIVYVIGLVPRINSYIFNYGAAANWLIGAGEYWRLVTAIFIHGGFLHILSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
GP +EKI G R++ ++ S I N
Sbjct: 81 YVFGPELEKIAGRARFIFIFLMSGIIGN 108
>gi|149181994|ref|ZP_01860480.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
gi|148850259|gb|EDL64423.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
Length = 485
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 9/98 (9%)
Query: 133 WTNILLAVNVLVY-IAQFA--TQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I +A+ +LV+ + + A TQD L+ +GAK N LI G++WR T +H H+
Sbjct: 158 FTYIFIALQLLVFFVMEMAGGTQDTENLIRFGAKYNPLIVDGEWWRFFTPIVIHIGFLHM 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVY----FSSAIAS 221
++N ++L +GP +E+I G R+L +Y FS +AS
Sbjct: 218 LMNTFALYFLGPAVERIFGSARFLFIYLFAGFSGTLAS 255
>gi|389818133|ref|ZP_10208574.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
gi|388464065|gb|EIM06401.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
Length = 202
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 134 TNILLAVNVLVYIAQFA--TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ L+A+N+LVY + D L +G N I +GQ+WR T FLH + HL+ N
Sbjct: 18 VSTLIALNLLVYALTWLPLLGDWLYFYGVGSNFYIAEGQWWRFFTPIFLHGGLMHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+SL GP +E++ G R+ +Y S+ + ++ +
Sbjct: 78 FSLFLFGPELERLTGKVRFTTIYLSAGLFASAA 110
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 131 RQWTNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
RQ ++ ++ ++ +A + Q LL+GA+ L+D+G++WR+ T+ F+H
Sbjct: 12 RQLYMYIIMIDSIILLAFYVVQTFFVSEPYAYLLFGAQYGPLVDQGEWWRIVTAMFMHGG 71
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL N Y+L +G E I G R+L + + IA N
Sbjct: 72 FLHLAFNMYALYILGSYAEGIYGTYRFLSYFILTGIAGN 110
>gi|311069089|ref|YP_003974012.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|419820266|ref|ZP_14343877.1| membrane endopeptidase [Bacillus atrophaeus C89]
gi|310869606|gb|ADP33081.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|388475418|gb|EIM12130.1| membrane endopeptidase [Bacillus atrophaeus C89]
Length = 511
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH +AHL N ++L SIG +EKI G R+L
Sbjct: 210 ETLVAFGAKENSLIAAGEWWRLVTPIVLHIGLAHLAFNTFALWSIGTAVEKIYGSGRFLL 269
Query: 213 VYFSSAI 219
+Y + +
Sbjct: 270 IYLLAGV 276
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L+AVNVL+++ Q A+ D+L LW I + D Q++RL TSAFLH + HL+ N +
Sbjct: 33 LIAVNVLMFVLQMASGDRLTEELTLWAPGI-AFYD--QYYRLVTSAFLHYGVMHLLFNMW 89
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +GP +E+ G RY +Y SA+ +
Sbjct: 90 ALYVVGPPLEQWLGRLRYGALYALSALGGS 119
>gi|227890613|ref|ZP_04008418.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|417788071|ref|ZP_12435754.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|417810486|ref|ZP_12457165.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|418961160|ref|ZP_13513047.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
gi|227867551|gb|EEJ74972.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|334308248|gb|EGL99234.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|335349282|gb|EGM50782.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|380344827|gb|EIA33173.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
Length = 220
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L +G +E I G R+L +Y S I N
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGN 105
>gi|90961526|ref|YP_535442.1| rhomboid family integral membrane protein [Lactobacillus salivarius
UCC118]
gi|385840241|ref|YP_005863565.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
gi|90820720|gb|ABD99359.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius UCC118]
gi|300214362|gb|ADJ78778.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
Length = 220
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L +G +E I G R+L +Y S I N
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGN 105
>gi|194017686|ref|ZP_03056296.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
gi|194010586|gb|EDW20158.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
Length = 512
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +AV V++++ L +GAK N LI G++WRL T FLH + HL
Sbjct: 184 FTYLFIAVQVVMFLLLELFGGSTNTATLTAFGAKNNGLILDGEWWRLITPMFLHIGLTHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+ N ++L S+G +EKI G R+L +YF S
Sbjct: 244 LFNTFALWSVGAAVEKIYGSWRFLLIYFISG 274
>gi|383761642|ref|YP_005440624.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381910|dbj|BAL98726.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 260
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L GAK+N + G+ WRL T FLH+ + HL+ N Y+L +GP +E G R+L V+
Sbjct: 53 LVLMGAKVNERLAAGELWRLVTPIFLHSGVMHLLFNLYALYILGPMLEGYIGHVRFLAVF 112
Query: 215 FSSAI 219
S +
Sbjct: 113 LISGL 117
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+++ G +N L+ G+++RL T+ FLHA++ HL +N +LN+IG +EK+ G +++ VY
Sbjct: 53 IIVLGGMVNLLVKNGEYYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKVLGKGKFIIVY 112
Query: 215 FSSAI 219
S I
Sbjct: 113 ILSLI 117
>gi|182418411|ref|ZP_02949705.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237666444|ref|ZP_04526429.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377793|gb|EDT75337.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237657643|gb|EEP55198.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 354
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK + LI G+ WRL + AFLH + H+ N Y L IGP +E+I G +Y+ +Y
Sbjct: 196 LIFLGAKYSPLIYDGEIWRLISCAFLHGSFLHIACNMYMLYIIGPQIERIYGKVKYIFIY 255
Query: 215 FSSAIAS 221
S I S
Sbjct: 256 LISCITS 262
>gi|386759084|ref|YP_006232300.1| membrane endopeptidase [Bacillus sp. JS]
gi|384932366|gb|AFI29044.1| membrane endopeptidase [Bacillus sp. JS]
Length = 503
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI +G++WRL T LH IAHL
Sbjct: 175 FTYLFIALQVLMFFVLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 234
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N +L S+G +E++ G R+L +Y ++ I
Sbjct: 235 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGI 266
>gi|334131953|ref|ZP_08505715.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
gi|333443426|gb|EGK71391.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
Length = 383
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N+ V+ A A L L WGA GQ+WRL ++ FLH +
Sbjct: 22 TVVLIALNLAVFAAMLAGGAGLWHSQNGVQLAWGANFGPATKDGQWWRLGSAMFLHFGLL 81
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N SL G +E++ GP R+L +Y S + N
Sbjct: 82 HLGMNMASLFDGGRLVERMFGPLRFLAIYVLSGLTGN 118
>gi|89099491|ref|ZP_01172367.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
gi|89085877|gb|EAR65002.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
Length = 196
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G+ WRLAT F+H+ H++ N +SL GP +E+I G ++ G+Y + I
Sbjct: 47 AGVNLFIREGEVWRLATPIFMHSGFTHVLFNSFSLVLFGPALERIAGKAKFAGIYLITGI 106
Query: 220 ASN 222
++N
Sbjct: 107 SAN 109
>gi|298706212|emb|CBJ29253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCY 192
TN+LLA+N +VY+ Q + G K+ I +GQ++RL T LH + HL VN
Sbjct: 60 TNVLLALNAIVYLFQM-RYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSM 118
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
S +S+GP +E++ G +++ VY + IA N
Sbjct: 119 SFSSVGPVVERVMGKAKFVTVYTLAGIAGN 148
>gi|381210355|ref|ZP_09917426.1| hypothetical protein LGrbi_10556 [Lentibacillus sp. Grbi]
Length = 520
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHL 187
T LL VN+ +++ + + L+ +GAK N ++I+ G++WR+ S FLH I HL
Sbjct: 186 TYFLLTVNIFMFLLLELNGNSTSTETLIEFGAKYNPAIIEDGEWWRIVASMFLHIGILHL 245
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++N ++ +G +E+I G R+L +YF + I
Sbjct: 246 LMNMLAVYYLGTVVERIYGSLRFLIIYFLAGIGG 279
>gi|386312683|ref|YP_006008848.1| rhomboid family protein [Shewanella putrefaciens 200]
gi|319425308|gb|ADV53382.1| Rhomboid family protein [Shewanella putrefaciens 200]
Length = 523
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-------QDKLLL-WGAK 161
+N+ E S L+ R G T +L+++N V+I + Q LLL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHLLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 N 222
+
Sbjct: 423 S 423
>gi|301300052|ref|ZP_07206273.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852350|gb|EFK80013.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIIMTLFGGTENIVNLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L +G +E I G R+L +Y S I N
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGN 105
>gi|410455491|ref|ZP_11309370.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
gi|409929185|gb|EKN66272.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
Length = 519
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 95 AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW-TNILLAVNVLVYI-AQF--- 149
+FA S + +K S + T R L G+ + T + +A+ +V+ +F
Sbjct: 145 SFAEDYSEQDVEAIKKESLDFANKKVKTERAILSNGKPFFTYVFIAIQAIVFFWLEFHGG 204
Query: 150 -ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+ +GAK+N LI G++WR T FLH HL +N +L +G T+EKI G
Sbjct: 205 STNTSTLIKYGAKVNQLILGGEWWRFITPIFLHIGFVHLAMNTLALYFLGTTVEKIFGSV 264
Query: 209 RYLGVYFSSAI 219
R+L +Y + +
Sbjct: 265 RFLLIYLFAGV 275
>gi|365157863|ref|ZP_09354108.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
gi|363622533|gb|EHL73692.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
Length = 397
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T LFI Q +AV +L+ I +T D L+ +GAK N LI G++WR T FLH
Sbjct: 186 TYLFIAVQ-----VAVFLLLEINGGSTNTDTLIRFGAKFNPLILDGEWWRFFTPIFLHIG 240
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ HL++N +L +G +EKI G R+L +Y S
Sbjct: 241 VLHLLMNTMALYYLGTMVEKIFGRWRFLWIYLFSGF 276
>gi|302782513|ref|XP_002973030.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
gi|300159631|gb|EFJ26251.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
Length = 432
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 130 GRQWTNILLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
G + ++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+
Sbjct: 223 GSIVVSTIVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHS 282
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ HL ++C++ S GP +E + G + +Y N
Sbjct: 283 GLLHLFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGN 322
>gi|219849715|ref|YP_002464148.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219543974|gb|ACL25712.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 271
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T L++ GAK+N I G+ WRL T+ LHAN+ H+ N Y+L+ +GP E+ G R+
Sbjct: 72 TLSVLVVLGAKVNERIAAGEVWRLLTATVLHANLIHIFFNGYALSVLGPETERFYGHVRF 131
Query: 211 LGVYFSSAIASN 222
L +Y S + +
Sbjct: 132 LVLYLLSGVGGS 143
>gi|1303863|dbj|BAA12519.1| YqgP [Bacillus subtilis]
Length = 507
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q +L ++L + L+ +GAK NSLI +G++WRL T LH I
Sbjct: 180 TYLFIALQ----ILMFSLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGI 235
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
AHL N +L S+G +E++ G R+L +Y ++ I
Sbjct: 236 AHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGI 270
>gi|116333635|ref|YP_795162.1| membrane-associated serine protease [Lactobacillus brevis ATCC 367]
gi|116098982|gb|ABJ64131.1| Membrane-associated serine protease [Lactobacillus brevis ATCC 367]
Length = 226
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ + VLV++A + + L+ +GAK+N LI +GQ+WRL T FLH H+
Sbjct: 18 TTGLVVIMVLVFVAMTLAGGSTSLNVLVAFGAKVNPLIQQGQWWRLITPMFLHIGFTHIF 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L +G +E G R+L ++ + I N
Sbjct: 78 LNMVTLYFVGTQLEAAFGHARFLIIFLVAGIGGN 111
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQD----KLLLWGA----KINSLIDKGQFWRLATSAFLHA 182
R T IL+ +NV V++A A D L+L+GA S + +GQ++RL T+ FLH
Sbjct: 69 RLITMILIGINVAVFLAVQAVGDSLVQDLILYGAWPPVDPTSGVAEGQWYRLLTATFLHQ 128
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N+ H+ N SL IGP +E G R+L VY SA+ +
Sbjct: 129 NVMHIGFNMLSLWWIGPGLEVALGRVRFLAVYLLSALGGS 168
>gi|221310411|ref|ZP_03592258.1| hypothetical protein Bsubs1_13621 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314734|ref|ZP_03596539.1| hypothetical protein BsubsN3_13537 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319657|ref|ZP_03600951.1| hypothetical protein BsubsJ_13458 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323934|ref|ZP_03605228.1| hypothetical protein BsubsS_13592 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767560|ref|NP_390367.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|418032339|ref|ZP_12670822.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452915762|ref|ZP_21964388.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
gi|251757277|sp|P54493.2|GLUP_BACSU RecName: Full=Rhomboid protease GluP; AltName: Full=Intramembrane
serine protease
gi|225185188|emb|CAB14418.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|351471202|gb|EHA31323.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959733|dbj|BAM52973.1| membrane endopeptidase [Bacillus subtilis BEST7613]
gi|407965308|dbj|BAM58547.1| membrane endopeptidase [Bacillus subtilis BEST7003]
gi|452116110|gb|EME06506.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
Length = 507
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ +L++ + L+ +GAK NSLI +G++WRL T LH IAHL
Sbjct: 179 FTYLFIALQILMFFLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N +L S+G +E++ G R+L +Y ++ I
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGI 270
>gi|402776749|ref|YP_006630693.1| membrane endopeptidase [Bacillus subtilis QB928]
gi|402481929|gb|AFQ58438.1| Membrane endopeptidase [Bacillus subtilis QB928]
Length = 505
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ +L++ + L+ +GAK NSLI +G++WRL T LH IAHL
Sbjct: 177 FTYLFIALQILMFFLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 236
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N +L S+G +E++ G R+L +Y ++ I
Sbjct: 237 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGI 268
>gi|430759046|ref|YP_007208970.1| hypothetical protein A7A1_3554 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430023566|gb|AGA24172.1| Hypothetical protein YqgP [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 507
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ +L++ + L+ +GAK NSLI +G++WRL T LH IAHL
Sbjct: 179 FTYLFIALQILMFFLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N +L S+G +E++ G R+L +Y ++ I
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGI 270
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 11/110 (10%)
Query: 116 GTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLA 175
G + + TAR + WT LLA+N+L Y+A+ ++++ + + +G++WRL
Sbjct: 72 GGAPVTTARVS------WT--LLAINLLAYVAEVLDPERVISAYGMWSIGVYQGEWWRLI 123
Query: 176 TSAFLHA---NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
TSAFLHA + H++ N ++L IGP +E++ G R+ +Y SA+ +
Sbjct: 124 TSAFLHAPPPSFWHILFNMWALYVIGPDLERLLGSARFAALYLLSALGGS 173
>gi|52081023|ref|YP_079814.1| integral membrane protein GluP [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319645019|ref|ZP_07999252.1| YqgP protein [Bacillus sp. BT1B_CT2]
gi|404489905|ref|YP_006714011.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52004234|gb|AAU24176.1| TPR motif integral membrane protein GluP [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52348902|gb|AAU41536.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392828|gb|EFV73622.1| YqgP protein [Bacillus sp. BT1B_CT2]
Length = 512
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAI 219
+Y S+ I
Sbjct: 269 IYISAGI 275
>gi|384176109|ref|YP_005557494.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595333|gb|AEP91520.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 507
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAI 219
+Y ++ I
Sbjct: 264 IYLAAGI 270
>gi|302805494|ref|XP_002984498.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
gi|300147886|gb|EFJ14548.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
Length = 459
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 130 GRQWTNILLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
G + ++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+
Sbjct: 223 GSIVVSTIVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHS 282
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ HL ++C++ S GP +E + G + +Y N
Sbjct: 283 GLLHLFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGN 322
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 134 TNILLAVNVLVY-IAQFATQDKLLLWGAKINSLI-----------DKGQFWRLATSAFLH 181
T ++AVNV+V+ + D + G + + + D G +WRL TSAFLH
Sbjct: 73 TMAIIAVNVVVFALTDIVGTDAITAAGRMVGADVIDTQGRLWPGMDDGGYWRLLTSAFLH 132
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
A + HL+ N Y+L GP +E+ G RY+ Y + A+ S
Sbjct: 133 AGVLHLLFNMYALYLFGPFVERALGSARYVAAYLTMAVFSG 173
>gi|113969173|ref|YP_732966.1| rhomboid family protein [Shewanella sp. MR-4]
gi|113883857|gb|ABI37909.1| Rhomboid family protein [Shewanella sp. MR-4]
Length = 520
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ N Y L G +E + G R LGVY + ++
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYLCCGLVAS 427
>gi|423682997|ref|ZP_17657836.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
gi|383439771|gb|EID47546.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
Length = 512
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAI 219
+Y S+ I
Sbjct: 269 IYISAGI 275
>gi|449094984|ref|YP_007427475.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
gi|449028899|gb|AGE64138.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
Length = 507
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAI 219
+Y ++ I
Sbjct: 264 IYLAAGI 270
>gi|417003054|ref|ZP_11942140.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478800|gb|EGC81910.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T +L+ VN+ V+I T L+ +GA + L+ GQ+WR+ ++AF+H H
Sbjct: 12 KVTLVLMIVNIAVFILMSLTGGSENISNLVRYGAMVKPLVHDGQWWRILSAAFIHIGFFH 71
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+M N Y L +IGP E++ G +L +Y + + N
Sbjct: 72 IMFNMYFLYNIGPLFERLYGSINFLIIYLLAGVMGN 107
>gi|428279976|ref|YP_005561711.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
gi|291484933|dbj|BAI86008.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
Length = 507
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAI 219
+Y ++ I
Sbjct: 264 IYLAAGI 270
>gi|389571781|ref|ZP_10161869.1| peptidase [Bacillus sp. M 2-6]
gi|388428267|gb|EIL86064.1| peptidase [Bacillus sp. M 2-6]
Length = 512
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T +L+AV V++++ L +GAK N LI +G++WR T FLH + HL
Sbjct: 184 FTYMLIAVQVVMFLLLELSGGSTNTATLTAFGAKNNVLILEGEWWRFVTPMFLHIGLTHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ N ++L S+G +E+I G R+L +Y S I
Sbjct: 244 LFNTFALWSVGAAVERIYGSGRFLLIYLISGI 275
>gi|325847279|ref|ZP_08169997.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480910|gb|EGC83959.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 221
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L++N Y LNS+G T E + G + +L +Y + + N
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGN 100
>gi|15613984|ref|NP_242287.1| hypothetical protein BH1421 [Bacillus halodurans C-125]
gi|10174038|dbj|BAB05140.1| BH1421 [Bacillus halodurans C-125]
Length = 514
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I G++WRL +S FLH I H M+N +L +G T+E+I G R+ +Y
Sbjct: 215 LIEFGAKYNPAIADGEWWRLLSSMFLHIGILHFMMNSLALFYLGGTVERIYGTSRFFIIY 274
Query: 215 FSSAIASN 222
F + +A +
Sbjct: 275 FIAGLAGS 282
>gi|120600057|ref|YP_964631.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|120560150|gb|ABM26077.1| Rhomboid family protein [Shewanella sp. W3-18-1]
Length = 523
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 N 222
+
Sbjct: 423 S 423
>gi|212697360|ref|ZP_03305488.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
gi|212675552|gb|EEB35159.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
Length = 221
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L++N Y LNS+G T E + G + +L +Y + + N
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGN 100
>gi|56420981|ref|YP_148299.1| hypothetical protein GK2446 [Geobacillus kaustophilus HTA426]
gi|56380823|dbj|BAD76731.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 390
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 210 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 269
Query: 213 VY----FSSAIAS 221
+Y F A+AS
Sbjct: 270 IYVTAGFFGALAS 282
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 137 LLAVNVLVYIAQFATQDKLLL--------WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+++V V++ I +A D L L +G N+ I+ GQ+WRL T FLH + H++
Sbjct: 18 VVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHML 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +SL GP +E++ G +++ Y +AI +N
Sbjct: 78 FNSFSLVLFGPALEQMLGRFKFILAYLGTAITAN 111
>gi|114048685|ref|YP_739235.1| rhomboid family protein [Shewanella sp. MR-7]
gi|113890127|gb|ABI44178.1| Rhomboid family protein [Shewanella sp. MR-7]
Length = 520
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ N Y L G +E + G R LGVY + ++
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYVCCGLVAS 427
>gi|375009531|ref|YP_004983164.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288380|gb|AEV20064.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 389
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 209 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 268
Query: 213 VY----FSSAIAS 221
+Y F A+AS
Sbjct: 269 IYVTAGFFGALAS 281
>gi|401406518|ref|XP_003882708.1| Rhomboid family protein, related [Neospora caninum Liverpool]
gi|325117124|emb|CBZ52676.1| Rhomboid family protein, related [Neospora caninum Liverpool]
Length = 283
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 136 ILLAVNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
I+ V V VYIA A T L ++GA I LI GQ WRL FLH N+
Sbjct: 64 IISLVQVAVYIASLALGLAPNEVLAPTPQTLAMFGANIPELIRIGQVWRLICPLFLHLNL 123
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+++N + + +G TME+ G ++ L YF I +N
Sbjct: 124 FHILMNLWVQSRVGLTMEEKYGSKKLLATYFGVGILAN 161
>gi|297529385|ref|YP_003670660.1| rhomboid family protein [Geobacillus sp. C56-T3]
gi|297252637|gb|ADI26083.1| Rhomboid family protein [Geobacillus sp. C56-T3]
Length = 386
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 206 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 265
Query: 213 VY----FSSAIAS 221
+Y F A+AS
Sbjct: 266 IYVTAGFFGALAS 278
>gi|456012071|gb|EMF45791.1| Rhomboid family protein [Planococcus halocryophilus Or1]
Length = 202
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+LVY+ + + + +G N I +GQ+WR T FLH+ + HL+ N +SL
Sbjct: 21 LIALNLLVYVLTWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHSGVMHLLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVY 214
GP +E++ G R++ +Y
Sbjct: 81 FLFGPELERLTGKIRFITIY 100
>gi|146292013|ref|YP_001182437.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145563703|gb|ABP74638.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 523
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 N 222
+
Sbjct: 423 S 423
>gi|261417690|ref|YP_003251372.1| rhomboid family protein [Geobacillus sp. Y412MC61]
gi|319767503|ref|YP_004133004.1| rhomboid family protein [Geobacillus sp. Y412MC52]
gi|261374147|gb|ACX76890.1| Rhomboid family protein [Geobacillus sp. Y412MC61]
gi|317112369|gb|ADU94861.1| Rhomboid family protein [Geobacillus sp. Y412MC52]
Length = 386
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 206 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 265
Query: 213 VY----FSSAIAS 221
+Y F A+AS
Sbjct: 266 IYVTAGFFGALAS 278
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+ +NV+++ Q + D +L+L+ + + G+++RL TSAFLH + H++ N
Sbjct: 72 TYVLIGINVVMFGLQTVSVDLQRELVLF----SPAVADGEWYRLLTSAFLHYGVTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +E G R++G+YF+SA+ +
Sbjct: 128 MWALYVVGPPLEAALGRLRFIGLYFTSALGGS 159
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 134 TNILLAVN-VLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+ +N +L ++ F ++ WG N ++ G++WRL T FLH ++ H +
Sbjct: 19 VSVLVIINLILWFVVNFLGLPIGREIYYWGVGSNFMVAAGEYWRLVTPIFLHGDLMHALF 78
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +SL GP +E++ G ++L +F + I +N
Sbjct: 79 NSFSLVLFGPALEQMLGKSKFLIAFFGAGIIAN 111
>gi|71908004|ref|YP_285591.1| rhomboid-like protein [Dechloromonas aromatica RCB]
gi|71847625|gb|AAZ47121.1| Rhomboid-like protein [Dechloromonas aromatica RCB]
Length = 358
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A NVL+++A L L WGA G++WRL ++ FLH I
Sbjct: 18 TPLLIAANVLIFVAMLLNGASLWHAQNTIQLAWGANFGPATQDGEWWRLGSALFLHFGIL 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL++N +L +G +E++ G R+ +Y ++ + N
Sbjct: 78 HLLLNMAALWDVGQWVERMYGTLRFAVIYLTAGLTGN 114
>gi|335039938|ref|ZP_08533080.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334180182|gb|EGL82805.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 253
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 137 LLAVN-VLVYIAQF-ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N VL + +F D + +G N I G++WRL T FLH + H + N ++L
Sbjct: 21 LIAINTVLFVLIRFPGIGDMIRYYGVGQNLAIAMGEYWRLVTPIFLHYRLMHFLFNSFAL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
P ME++ G +++G+Y ++ IA N
Sbjct: 81 IIFAPAMERLLGRWKFIGLYLATGIAGN 108
>gi|219121723|ref|XP_002181210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407196|gb|EEC47133.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 342
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 129 IGR-QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQ-FWRLATSAFLHANIAH 186
IGR W++ ++ N+ + AQ A + WG K++ I +G+ +RL T FLH H
Sbjct: 83 IGRLSWSSRIIWTNIATFAAQ-AWKPSFTQWGIKVSEKILRGEELYRLITPVFLHGGFGH 141
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ N SL+ +GP +E++ G R+L Y S + N
Sbjct: 142 IFTNMISLSRVGPDVERLFGSGRFLTTYMVSGMTGN 177
>gi|374995763|ref|YP_004971262.1| hypothetical protein Desor_3244 [Desulfosporosinus orientis DSM
765]
gi|357214129|gb|AET68747.1| putative membrane protein [Desulfosporosinus orientis DSM 765]
Length = 316
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V+ ++ L+ +GAK+NSLI G+ WR TS F+H HL N
Sbjct: 139 LIGINLVVFFLMTLAGGSQNREVLIAFGAKVNSLILAGEVWRFFTSMFIHIGYLHLGFNL 198
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Y+L +GP EK+ G R+L +Y S + +
Sbjct: 199 YALWVLGPFTEKLFGHWRFLVIYLLSGLGGS 229
>gi|205374009|ref|ZP_03226809.1| hypothetical protein Bcoam_12572 [Bacillus coahuilensis m4-4]
Length = 392
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N LI +G++WR T FLH HL++N ++L IG +EKI G R+L
Sbjct: 208 ETLVFFGAKFNPLILEGEWWRFITPIFLHIGFFHLLMNTFALVLIGREVEKIFGKWRFLF 267
Query: 213 VYFSSAI 219
+Y + I
Sbjct: 268 IYLLAGI 274
>gi|170076963|ref|YP_001733601.1| rhomboid family membrane protein [Synechococcus sp. PCC 7002]
gi|169884632|gb|ACA98345.1| conserved, probable membrane protein, rhomboid family
[Synechococcus sp. PCC 7002]
Length = 550
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 135 NILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+AVN LV++ A + +L G I + + +G++WRL T+ F+H +AHL++
Sbjct: 346 SVLVAVNCLVFLGAIAVSSPENPEAMLQGGGFIPNQVLQGEWWRLFTANFIHVGLAHLLM 405
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L +GP EK G RYL VY S +
Sbjct: 406 NMATLALLGPFAEKHLGRSRYLLVYLGSGFGAT 438
>gi|448238728|ref|YP_007402786.1| rhomboid family protein [Geobacillus sp. GHH01]
gi|445207570|gb|AGE23035.1| rhomboid family protein [Geobacillus sp. GHH01]
Length = 389
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 185 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVY----FSSAIAS 221
HL+ N +L +G T+E++ G R+L +Y F A+AS
Sbjct: 241 LHLLTNTLALYYLGITVERLYGSFRFLFIYVTAGFFGALAS 281
>gi|194466614|ref|ZP_03072601.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
gi|194453650|gb|EDX42547.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
Length = 219
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVY----IAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ VLVY A +T +LL GA+ SLI +G++WRL + FLH ++HL+
Sbjct: 12 TLILIVFQVLVYCWLVYAGGSTNTVILLKMGARSTSLIREGEWWRLVSPVFLHVGLSHLV 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
VN +L IG +E+ G R + +YF SAI N
Sbjct: 72 VNSVTLLYIGRYIEEFFGHWRMVVIYFISAIFGN 105
>gi|365902867|ref|ZP_09440690.1| membrane-associated serine protease [Lactobacillus malefermentans
KCTC 3548]
Length = 226
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
I++ V +L+ + +T +L+ +GAK++SLI GQ+WRL T FLH H+++N +
Sbjct: 20 GIMVIVFLLMTVMGGSTNTYVLIQFGAKVSSLIQAGQWWRLFTPVFLHIGFEHILLNGIT 79
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L +G +E+I G RY ++ +AI N
Sbjct: 80 LYFLGLQIERIFGHWRYFIIFVVTAIGGN 108
>gi|300781971|ref|YP_003762262.1| hypothetical protein AMED_0036 [Amycolatopsis mediterranei U32]
gi|384145172|ref|YP_005527988.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|399533854|ref|YP_006546515.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
gi|299791485|gb|ADJ41860.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340523326|gb|AEK38531.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|398314624|gb|AFO73571.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
Length = 266
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 20/136 (14%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQ-----WTNILLAVNVLVYIAQFATQDKL----- 155
GG + H G + +F R T +LAVNVLV++ A L
Sbjct: 4 GGQEQRRQHRGYQEAGFGQRTVFGARLSRSVLVTQAILAVNVLVFLLTVAQAGSLNDNDL 63
Query: 156 -------LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+G ++ + G++WR+ T+ FLH H+ VN +SL +G ++E++CG
Sbjct: 64 SSAFQHGALYG---DATLGHGEWWRILTNGFLHYGPIHIAVNMFSLWMMGRSLEQVCGRG 120
Query: 209 RYLGVYFSSAIASNNS 224
R+L +YF S + ++ S
Sbjct: 121 RFLALYFVSMLGASAS 136
>gi|223994881|ref|XP_002287124.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976240|gb|EED94567.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 866
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKG-QFWRLATSAFLHANIA 185
G+ N L L+ IA F Q L WGAK + L+ +G Q RL T FLH I
Sbjct: 527 GQIGKNTLTGNIFLLNIAVFGMQTLYPALTGWGAKRSDLLLEGRQLHRLITPIFLHGGIG 586
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HLM N YSL S+G +E+ G R++ Y S I N
Sbjct: 587 HLMANSYSLKSMGMNIERSFGRSRFVATYLLSGIMGN 623
>gi|419758894|ref|ZP_14285206.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|419857800|ref|ZP_14380503.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
gi|421185357|ref|ZP_15642768.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|421188834|ref|ZP_15646166.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|421189623|ref|ZP_15646937.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|421190919|ref|ZP_15648203.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|421193560|ref|ZP_15650806.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|421195397|ref|ZP_15652605.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|421197510|ref|ZP_15654685.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399904349|gb|EJN91805.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|399964167|gb|EJN98821.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|399964538|gb|EJN99179.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|399971719|gb|EJO05958.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|399972713|gb|EJO06912.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|399973615|gb|EJO07780.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|399975119|gb|EJO09187.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399975822|gb|EJO09857.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|410497271|gb|EKP88746.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
Length = 241
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 54 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 113
Query: 213 VYFSSAIASN 222
+Y S + N
Sbjct: 114 IYLLSGLWGN 123
>gi|116490957|ref|YP_810501.1| membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290890431|ref|ZP_06553506.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|419859592|ref|ZP_14382246.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|116091682|gb|ABJ56836.1| Membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290479827|gb|EFD88476.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|410496609|gb|EKP88092.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 236
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 49 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 108
Query: 213 VYFSSAIASN 222
+Y S + N
Sbjct: 109 IYLLSGLWGN 118
>gi|413925970|gb|AFW65902.1| hypothetical protein ZEAMMB73_057038 [Zea mays]
Length = 503
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 118 SHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDK 168
S LD + G TN+L VN+ V + + A+ K LL+GAKIN+LI
Sbjct: 249 SLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNLILS 308
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
G++WRL T LH+ H+ + C++L GP + + G R + +Y I N
Sbjct: 309 GEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGN 362
>gi|403669619|ref|ZP_10934810.1| hypothetical protein KJC8E_12316 [Kurthia sp. JC8E]
Length = 206
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 137 LLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L +N+ VY+ + + GA IN LI +G++WR+ T+ F+H H++ N + L
Sbjct: 21 FLLINIAVYLVGLVPSIGNWIFAKGAAINFLIAQGEYWRVVTAIFIHGGFMHVLSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
GP +E+I G R+ +Y + I N
Sbjct: 81 YVFGPELERIAGKARFFTIYMLAGILGN 108
>gi|393788564|ref|ZP_10376691.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
gi|392654244|gb|EIY47892.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
Length = 467
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 134 TNILLAVNVLVYIAQ-------FATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +NVLV+I F + +LL WGA L G +WR T F+H I
Sbjct: 38 TPILLGINVLVFILMTLSGVNLFEPKTLELLQWGADFGPLTLTGSWWRTLTCNFVHIGIV 97
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
H+++N Y+L IG +E + G RR Y + + S
Sbjct: 98 HILMNMYALVYIGVLLEPMFGTRRMFAAYLLTGLCS 133
>gi|239827720|ref|YP_002950344.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239808013|gb|ACS25078.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 389
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ VLV++ + L+ +GAK N LI +G++WR T FLH HL+
Sbjct: 186 TYIFIALQVLVFLLMEWSGGSTNPAVLIQYGAKFNPLIQEGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVY 214
+N ++L +G T+E++ G R+ +Y
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIY 271
>gi|227510498|ref|ZP_03940547.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190150|gb|EEI70217.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 234
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ + L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
F+H H+++N +L IG +E + G R+L ++ +S IA N
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLASGIAGN 118
>gi|443631783|ref|ZP_21115963.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347898|gb|ELS61955.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 507
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ L+ +GAK NSLI G++WRL T LH IAHL
Sbjct: 179 FTYVFIALQVLMFFLLELNGGSTNTQTLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N +L S+G +E++ G R+L +Y ++ I
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGI 270
>gi|24372586|ref|NP_716628.1| rhomboid protease [Shewanella oneidensis MR-1]
gi|24346607|gb|AAN54073.1| rhomboid protease [Shewanella oneidensis MR-1]
Length = 528
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 129 IGRQWTNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFL 180
+G T ILL VL+++ FA+ LL WGA + L+ Q WRL ++ FL
Sbjct: 332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H + HL+ N Y L G +E + G R LGVY S +A++
Sbjct: 392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAAS 433
>gi|381182764|ref|ZP_09891551.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
gi|380317332|gb|EIA20664.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
Length = 516
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR + FLH + H+ NC + +GP EKI G RY+ +
Sbjct: 210 LVEYGAKFNPLIYQGEWWRFISPIFLHTGLMHIAANCLMIYIVGPWAEKIYGRWRYIVIL 269
Query: 215 FSSAIASN 222
IA N
Sbjct: 270 LVGGIAGN 277
>gi|333992831|ref|YP_004525445.1| serine protease [Mycobacterium sp. JDM601]
gi|333488799|gb|AEF38191.1| serine protease [Mycobacterium sp. JDM601]
Length = 264
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 137 LLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
L+A+NVL +I Q ++ +L+LW + + GQ +RL TSAFLH HL++N ++
Sbjct: 67 LIALNVLAFIGQMSSHQLDSELVLW----SPAVADGQLYRLLTSAFLHYGAMHLLLNMWA 122
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L +GP +E + G R+ +Y SA+ +
Sbjct: 123 LYVVGPPLEGLLGRSRFSALYLLSALGGS 151
>gi|94968908|ref|YP_590956.1| rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94550958|gb|ABF40882.1| Rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 365
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 134 TNILLAVNVLVYIA------QFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NV V++A QF D L WGA G++WR+ TS FLH I
Sbjct: 61 TRILIGINVAVFLAMVLLTRQFVEFDTPTALRWGADYGPATASGEWWRMLTSMFLHGGIL 120
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
H++VN ++L ++G T E G + +L +Y S + +
Sbjct: 121 HILVNMFALRNLGYTAELFYGRKNFLIIYMLSGFGGSAA 159
>gi|345022094|ref|ZP_08785707.1| hypothetical protein OTW25_12319 [Ornithinibacillus scapharcae
TW25]
Length = 517
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIA-QF----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+A+N ++Y+ +F + + L+ +GAK N LI G++WR+ TS FLH + H +
Sbjct: 187 TYLLIAINAILYLLLEFNGGSESNETLIEYGAKFNPLILDGEWWRVVTSMFLHIGLFHFI 246
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N L G EKI G R+ +Y + IA +
Sbjct: 247 SNMLFLYYFGSLAEKIYGSLRFFFIYMLAGIAGS 280
>gi|163790986|ref|ZP_02185408.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
gi|159873725|gb|EDP67807.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
Length = 235
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T + LA+ +L ++ T D LL +GAK N I G++WRL T FLH H
Sbjct: 19 TYLFLAIQILAFVLM--TLDGGSTNMVTLLKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 76
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L++N L +G +E + G R+ G+Y S IA N
Sbjct: 77 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGN 112
>gi|296333354|ref|ZP_06875807.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675141|ref|YP_003866813.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149552|gb|EFG90448.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413385|gb|ADM38504.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 506
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAI 219
+Y ++ I
Sbjct: 264 IYLAAGI 270
>gi|138896022|ref|YP_001126475.1| hypothetical protein GTNG_2385 [Geobacillus thermodenitrificans
NG80-2]
gi|134267535|gb|ABO67730.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 386
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 182 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 241
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
N ++L +G T+E++ G R+L +Y ++
Sbjct: 242 TNTFALYYLGITVERLYGSLRFLLIYTTAG 271
>gi|317128371|ref|YP_004094653.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
gi|315473319|gb|ADU29922.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
Length = 524
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 118 SHLDTARTNLFIGRQW-TNILLAVNVLVY-IAQF----ATQDKLLLWGAKINSLIDKGQF 171
+ ++ R F G+ T ILLA +++Y I ++ + + L+ +GAK N LI +G++
Sbjct: 173 NQVEKDRKVFFYGKPIVTFILLATILIMYAIVEYNGSSMSTETLISFGAKFNPLILQGEW 232
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
WR ++ FLH HLM+N +L +G +E+I G R+L +Y + + +
Sbjct: 233 WRFFSAMFLHIGFFHLMMNSLALFYLGSAVERIYGTGRFLIIYLIAGLVGS 283
>gi|196248915|ref|ZP_03147615.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196211791|gb|EDY06550.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 390
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 186 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
N ++L +G T+E++ G R+L +Y ++
Sbjct: 246 TNTFALYYLGITVERLYGSLRFLLIYATAG 275
>gi|242061182|ref|XP_002451880.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
gi|241931711|gb|EES04856.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
Length = 328
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 108 TRKNSGHEG-TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL---------LL 157
R N+G + S LD + G TN+L A+N+ V + + A+ K LL
Sbjct: 137 VRGNTGIKSYQSLLDMHTDDQASGFYLTNLLAAINIAVLLFEIASPVKSSENEYLSLPLL 196
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+GAKIN+LI G++WRL T LH+ H+ + C++L GP + + G + +Y
Sbjct: 197 YGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLLFGPRVCRAYGQMTFFLIYILG 256
Query: 218 AIASN 222
I N
Sbjct: 257 GICGN 261
>gi|333395939|ref|ZP_08477756.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145094|ref|ZP_14652570.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403329|gb|EJN56584.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 223
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 39 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 98
Query: 213 VYFSSAIASN 222
+Y S I N
Sbjct: 99 IYLLSGIVGN 108
>gi|456387124|gb|EMF52637.1| hypothetical protein SBD_5713 [Streptomyces bottropensis ATCC
25435]
Length = 297
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFAT----QDKLLL--- 157
G GT H +A + R T IL+ VN+L+++ Q A +D+ L
Sbjct: 56 GGSGTGHAPSASAPRTLAGGTVAADPRLLTKILIGVNLLLFLVQQAVGDTFEDRFDLIGR 115
Query: 158 -WGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
W ++ S + +GQ++RL TS FLH ++ H++ N SL IG +E G RYL +
Sbjct: 116 AWDPELGSSLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAALGRARYLTL 175
Query: 214 YFSSAIASN 222
YF S +A +
Sbjct: 176 YFVSGLAGS 184
>gi|212638734|ref|YP_002315254.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
gi|212560214|gb|ACJ33269.1| Serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
Length = 517
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH HL +N ++L +GP +EK+ G R+L +Y
Sbjct: 217 LIQYGAKFNPLILQGEWWRFFTPIVLHIGFVHLFMNTFALYYLGPLVEKLYGSLRFLFIY 276
Query: 215 FSSAIASN 222
+ A +
Sbjct: 277 LFAGFAGS 284
>gi|336391270|ref|ZP_08572669.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 209
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 25 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 84
Query: 213 VYFSSAIASN 222
+Y S I N
Sbjct: 85 IYLLSGIVGN 94
>gi|333398096|ref|ZP_08479909.1| membrane-associated serine protease [Leuconostoc gelidum KCTC 3527]
gi|406599712|ref|YP_006745058.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
gi|406371247|gb|AFS40172.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
Length = 229
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 137 LLAVNVLVYIAQFATQ-------DKLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F L+ +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSLLVAFGAKWGPYIKAYDQYWRLVTPIFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L IGP E+ G R++LG+Y I N
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGN 111
>gi|17549744|ref|NP_523084.1| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]
gi|17431999|emb|CAD18676.1| probable membrane transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 569
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVL ++A D L G + +G++WRL ++ FLHA +
Sbjct: 208 THALIALNVLAWLATLVLGGNPLQTPTDVLFNLGGNAAFEVQQGEWWRLLSATFLHAGVL 267
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HL VN L + G T+E+I GP YL +Y + +
Sbjct: 268 HLAVNMIGLYAAGVTVERIYGPVAYLLIYLGAGL 301
>gi|162449650|ref|YP_001612017.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
gi|161160232|emb|CAN91537.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
Length = 565
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 157 LW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW GA + G+ +RL SAFLHA+ HL VN +L S GP +E + GPRR+L +Y
Sbjct: 208 LWRMGANSGEAVRHGELYRLLASAFLHADPMHLFVNMLALWSFGPMLEALLGPRRFLLLY 267
Query: 215 FSSAIASN 222
+SA+ +
Sbjct: 268 GASALGGS 275
>gi|116789343|gb|ABK25213.1| unknown [Picea sitchensis]
Length = 301
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
N L A+N+ V++ + A+ K LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 52 NTLAAINIAVFLFELASPVKSSDAGILSLPLLFGAKINELILNGEWWRLITPKFLHSGLL 111
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ + ++L + GP ++ G + +YF + N
Sbjct: 112 HIAFSSWALLTFGPLVDTAYGSFAFCMIYFLGGVCGN 148
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I + Q++RL T+AFLHA
Sbjct: 45 TQILIGLCVVAYILQGAPGLAGGDNSNRFTDDFAMIGFRIAA---DDQYYRLLTAAFLHA 101
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
+ H++ N Y+L +G +E I G RYLG++ + A+ N
Sbjct: 102 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNT 142
>gi|307312628|ref|ZP_07592260.1| Rhomboid family protein [Escherichia coli W]
gi|417606768|ref|ZP_12257294.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
gi|306907330|gb|EFN37835.1| Rhomboid family protein [Escherichia coli W]
gi|345364756|gb|EGW96877.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
Length = 265
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|29377262|ref|NP_816416.1| small hydrophobic molecule transporter protein [Enterococcus
faecalis V583]
gi|227554271|ref|ZP_03984318.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229544828|ref|ZP_04433553.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|229549095|ref|ZP_04437820.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|256616711|ref|ZP_05473557.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256854083|ref|ZP_05559448.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256960966|ref|ZP_05565137.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|257081651|ref|ZP_05576012.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|257084247|ref|ZP_05578608.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|257087753|ref|ZP_05582114.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|257091025|ref|ZP_05585386.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257420174|ref|ZP_05597168.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257421601|ref|ZP_05598591.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382447|ref|ZP_06628382.1| rhomboid family protein [Enterococcus faecalis R712]
gi|293387169|ref|ZP_06631730.1| rhomboid family protein [Enterococcus faecalis S613]
gi|300860492|ref|ZP_07106579.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|307276144|ref|ZP_07557275.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|307286868|ref|ZP_07566950.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|312900482|ref|ZP_07759784.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|312904732|ref|ZP_07763881.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|312906502|ref|ZP_07765504.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|312910446|ref|ZP_07769292.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|312951098|ref|ZP_07770003.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|384514113|ref|YP_005709206.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|384519578|ref|YP_005706883.1| rhomboid family protein [Enterococcus faecalis 62]
gi|421512726|ref|ZP_15959525.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|422684496|ref|ZP_16742732.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|422690193|ref|ZP_16748251.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|422691144|ref|ZP_16749183.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|422693799|ref|ZP_16751805.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|422697513|ref|ZP_16755449.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|422699619|ref|ZP_16757482.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|422702192|ref|ZP_16760030.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|422706114|ref|ZP_16763819.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|422709156|ref|ZP_16766669.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|422712654|ref|ZP_16769417.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|422716503|ref|ZP_16773207.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|422719592|ref|ZP_16776223.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|422723419|ref|ZP_16779955.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|422726049|ref|ZP_16782504.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|422731124|ref|ZP_16787499.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|422734025|ref|ZP_16790322.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|422738373|ref|ZP_16793570.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|424672612|ref|ZP_18109567.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|424755744|ref|ZP_18183600.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|428767934|ref|YP_007154045.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|430359105|ref|ZP_19425721.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|430370856|ref|ZP_19429263.1| membrane-associated serine protease [Enterococcus faecalis M7]
gi|29344728|gb|AAO82486.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis V583]
gi|227176561|gb|EEI57533.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229305783|gb|EEN71779.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|229310050|gb|EEN76037.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|256596238|gb|EEU15414.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256711026|gb|EEU26069.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256951462|gb|EEU68094.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|256989681|gb|EEU76983.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|256992277|gb|EEU79579.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|256995783|gb|EEU83085.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|256999837|gb|EEU86357.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257162002|gb|EEU91962.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257163425|gb|EEU93385.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080131|gb|EFE17495.1| rhomboid family protein [Enterococcus faecalis R712]
gi|291083440|gb|EFE20403.1| rhomboid family protein [Enterococcus faecalis S613]
gi|295113720|emb|CBL32357.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Enterococcus sp. 7L76]
gi|300849531|gb|EFK77281.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|306502083|gb|EFM71369.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|306507138|gb|EFM76277.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|310627445|gb|EFQ10728.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|310630874|gb|EFQ14157.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|310631933|gb|EFQ15216.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|311289218|gb|EFQ67774.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|311292401|gb|EFQ70957.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|315026583|gb|EFT38515.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|315030810|gb|EFT42742.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|315033041|gb|EFT44973.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|315036315|gb|EFT48247.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|315145726|gb|EFT89742.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|315148748|gb|EFT92764.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|315154212|gb|EFT98228.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|315156498|gb|EFU00515.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|315158975|gb|EFU02992.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|315162792|gb|EFU06809.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|315166274|gb|EFU10291.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|315169133|gb|EFU13150.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|315171857|gb|EFU15874.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|315173893|gb|EFU17910.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|315575258|gb|EFU87449.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|315576837|gb|EFU89028.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|315582383|gb|EFU94574.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|323481711|gb|ADX81150.1| rhomboid family protein [Enterococcus faecalis 62]
gi|327536002|gb|AEA94836.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|401674182|gb|EJS80541.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|402354963|gb|EJU89751.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|402408930|gb|EJV41379.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|427186107|emb|CCO73331.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|429513460|gb|ELA03041.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|429515221|gb|ELA04739.1| membrane-associated serine protease [Enterococcus faecalis M7]
Length = 236
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 113
>gi|407718091|ref|YP_006795496.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
gi|407241847|gb|AFT81497.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
Length = 229
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 137 LLAVNVLVYIA-------QFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLM 188
+LAV +LV+IA Q A + L+ +GAK I Q+WRL T FLHA H+
Sbjct: 18 ILAVTILVFIAEGLFSGGQTANGEFLVSFGAKWGPYIHHYDQYWRLLTPVFLHAGFMHIA 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L IGP E+ G ++LG+YF I N
Sbjct: 78 TNMLTLWFIGPLAEEAFGRWKFLGLYFFGGIFGN 111
>gi|422727749|ref|ZP_16784179.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
gi|315151706|gb|EFT95722.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
Length = 236
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 113
>gi|257079952|ref|ZP_05574313.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294779541|ref|ZP_06744936.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|307269340|ref|ZP_07550690.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|307289776|ref|ZP_07569713.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|397700974|ref|YP_006538762.1| rhomboid family protein [Enterococcus faecalis D32]
gi|256987982|gb|EEU75284.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294453420|gb|EFG21827.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|306499161|gb|EFM68639.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|306514339|gb|EFM82904.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|397337613|gb|AFO45285.1| rhomboid family protein [Enterococcus faecalis D32]
Length = 236
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 113
>gi|256963891|ref|ZP_05568062.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257416957|ref|ZP_05593951.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|307272082|ref|ZP_07553345.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
gi|307280665|ref|ZP_07561713.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|256954387|gb|EEU71019.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257158785|gb|EEU88745.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|306504031|gb|EFM73248.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|306511198|gb|EFM80205.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
Length = 236
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 113
>gi|227524649|ref|ZP_03954698.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
gi|227088133|gb|EEI23445.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
Length = 234
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ + L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
F+H H+++N +L IG +E + G R+L ++ S IA N
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGN 118
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+A+N+++++ F T LL WG ++ + G+ +RL +S F+H N H+++N
Sbjct: 162 LIAINIIIWLFMFLIINAFTNRSLLDWGGLVHFNVVHGEIYRLISSMFIHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G + LG+YF S I N
Sbjct: 222 LSLFIFGKLVEAIAGHWKMLGIYFISGIFGN 252
>gi|227519427|ref|ZP_03949476.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|424678054|ref|ZP_18114899.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|424679974|ref|ZP_18116787.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|424684441|ref|ZP_18121157.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|424687903|ref|ZP_18124525.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|424689750|ref|ZP_18126306.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|424694204|ref|ZP_18130609.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|424696292|ref|ZP_18132647.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|424700479|ref|ZP_18136665.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|424704746|ref|ZP_18140840.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|424706937|ref|ZP_18142930.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|424718163|ref|ZP_18147420.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|424720446|ref|ZP_18149548.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|424726078|ref|ZP_18154762.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|424734075|ref|ZP_18162625.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|424746066|ref|ZP_18174317.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|424753580|ref|ZP_18181522.1| peptidase, S54 family [Enterococcus faecalis ERV93]
gi|227073134|gb|EEI11097.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|402352548|gb|EJU87394.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|402355193|gb|EJU89971.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|402361515|gb|EJU96072.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|402362568|gb|EJU97093.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|402366516|gb|EJV00887.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|402371419|gb|EJV05578.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|402373701|gb|EJV07766.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|402378181|gb|EJV12058.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|402381183|gb|EJV14896.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|402382489|gb|EJV16152.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|402386145|gb|EJV19654.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|402389794|gb|EJV23175.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|402390594|gb|EJV23928.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|402393308|gb|EJV26536.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|402397911|gb|EJV30902.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|402403870|gb|EJV36518.1| peptidase, S54 family [Enterococcus faecalis ERV93]
Length = 236
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 113
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
G N+L+ + +++Y+ F+ KLL G ++ + G+++RL TS FLH N H+++
Sbjct: 161 GLIIINVLIWLIMILYLNHFSDV-KLLDLGGLVHFNVVHGEWYRLITSMFLHFNFEHILM 219
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N SL G +E I GP R LG+Y S + N
Sbjct: 220 NMLSLFIFGKIVESIVGPLRMLGIYVISGLLGN 252
>gi|452975048|gb|EME74867.1| rhomboid protease YggP [Bacillus sonorensis L12]
Length = 512
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WR T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLIRFGAKENSLILAGEWWRFVTPIILHIGLIHLMFNTFALLSVGAAAERVFGSFRFLI 268
Query: 213 VYFSSAI 219
+Y ++ +
Sbjct: 269 IYITAGV 275
>gi|373859031|ref|ZP_09601763.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372451122|gb|EHP24601.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 522
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 133 WTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T ILL + + V + L+ +GAK N LI +GQ+WR T F+H HL
Sbjct: 184 FTYILLVIQIAVLLVMELNGGSTNSTTLIKFGAKFNPLIIEGQWWRFLTPIFIHIGFLHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVY----FSSAIAS 221
++N +L IGP +E+I G R++ +Y F+ +AS
Sbjct: 244 IMNSIALYYIGPLVERIYGNFRFILIYLFAGFTGVLAS 281
>gi|227513507|ref|ZP_03943556.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
gi|227083380|gb|EEI18692.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
Length = 234
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ + L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
F+H H+++N +L IG +E + G R+L ++ S IA N
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGN 118
>gi|255971815|ref|ZP_05422401.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962833|gb|EET95309.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 230
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 107
>gi|300173053|ref|YP_003772219.1| membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
gi|299887432|emb|CBL91400.1| Membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 137 LLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F L+ +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSILVAFGAKWGPYIKVYDQYWRLVTPLFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L IGP E+ G R++LG+Y I N
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGN 111
>gi|255974810|ref|ZP_05425396.1| membrane-associated serine protease [Enterococcus faecalis T2]
gi|255967682|gb|EET98304.1| membrane-associated serine protease [Enterococcus faecalis T2]
Length = 230
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 107
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 131 RQWTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R T+ L+ +NVL++I + F+ +L+GA++ +LI G+++RL TS F+H
Sbjct: 3 RNVTSYLIMLNVLIFIMMFLFGGLSAFSNPRIYILFGAQLGNLITAGEWFRLITSMFVHG 62
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ H+ N +L +G +E+ G R++ +Y S I N
Sbjct: 63 GLFHIFFNMIALFYVGNIVERAYGKERFISIYMLSGIFGN 102
>gi|227485794|ref|ZP_03916110.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
gi|227236172|gb|EEI86187.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
Length = 227
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T++L+ +N++V++ + + L+ +GA L+ G++WRL T++F+H H++
Sbjct: 14 TSVLMVINIIVFVLMSLSGGSENIENLIRFGANSKILVAHGEWWRLITASFIHIGFFHIL 73
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y S+GP E++ G +L +Y S I N
Sbjct: 74 FNMYFFYSLGPIFERLFGSFNFLIIYLISGIFGN 107
>gi|296167263|ref|ZP_06849666.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897363|gb|EFG76966.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 285
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 116 GTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLI 166
G + RT F GRQ T L+A+NVL ++ Q A + +L LW +
Sbjct: 53 GARTIRQPRTR-FGGRQRSAAPVLTYALIAINVLAFVLQLAAGNLERQLALW----PPAV 107
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ++RLATSAFLH HL+ N ++L +GP +E G R+ +Y S + +
Sbjct: 108 ADGQYYRLATSAFLHYGATHLVFNMWALYVVGPPLESWLGRLRFGALYAMSGLGGS 163
>gi|256763410|ref|ZP_05503990.1| membrane-associated serine protease [Enterococcus faecalis T3]
gi|256684661|gb|EEU24356.1| membrane-associated serine protease [Enterococcus faecalis T3]
Length = 230
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPIFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L IG +E I G RYLG+Y S IA N
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 107
>gi|424780986|ref|ZP_18207852.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
gi|422842406|gb|EKU26858.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
Length = 200
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ L+ +GQ+WRL T+ F+H AHL +N +L IGP +E G RYL +Y
Sbjct: 45 LLTFGAEWGPLVHQGQWWRLITAMFVHIGFAHLFLNLLTLYFIGPELEFYLGKIRYLLLY 104
Query: 215 FSSAIASN 222
I N
Sbjct: 105 LLCGIGGN 112
>gi|347755936|ref|YP_004863500.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347588454|gb|AEP12984.1| putative membrane protein [Candidatus Chloracidobacterium
thermophilum B]
Length = 424
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 136 ILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+L+ +NV +++ FA D L +GA LID+G+ WRL FLH + HL+ N
Sbjct: 63 VLIGINVAMFLLTAFAGGSTDPDVLTAFGACNRKLIDQGEVWRLVVPMFLHIGMIHLLAN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
Y+L +GP +E + G R+ +Y S I
Sbjct: 123 MYALWVLGPQLESLYGSARFTILYLLSGIGG 153
>gi|227530504|ref|ZP_03960553.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
gi|227349609|gb|EEJ39900.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
Length = 220
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA++ SLI +GQ+WRL T FLH IAHL++N +L +G +E++ R L +Y SA
Sbjct: 42 GARVTSLIHEGQWWRLITPVFLHIGIAHLIINSITLYFLGMYIEELFSHWRMLVIYLVSA 101
Query: 219 IASN 222
N
Sbjct: 102 FTGN 105
>gi|398304447|ref|ZP_10508033.1| hypothetical protein BvalD_02972 [Bacillus vallismortis DV1-F-3]
Length = 507
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI G++WRL T LH I HL
Sbjct: 179 FTYLFIALQVLMFFLLEIKGGSTNTETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIVHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N +L S+G +E++ G R+L +Y ++ I
Sbjct: 239 AFNTLALWSVGTEVERMYGSGRFLLIYLAAGI 270
>gi|421186400|ref|ZP_15643793.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
gi|399967353|gb|EJO01835.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
Length = 241
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ Q +LL G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +
Sbjct: 52 SIQSSILL-GGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTK 110
Query: 210 YLGVYFSSAIASN 222
YL +Y S + N
Sbjct: 111 YLLIYLLSGLWGN 123
>gi|392945858|ref|ZP_10311500.1| putative membrane protein [Frankia sp. QA3]
gi|392289152|gb|EIV95176.1| putative membrane protein [Frankia sp. QA3]
Length = 341
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 14/101 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I +D Q++RL T+AFLHA
Sbjct: 134 TQILIGLCVVAYILQGAPGLAGGDTSNRFTDDFAMIGFRIA--VDD-QYYRLLTAAFLHA 190
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
+ H++ N Y+L +G +E I G RYLG++ + A+ N
Sbjct: 191 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNT 231
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFS-DIKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N SL G +E I GP + LG+Y S + N
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGN 252
>gi|422960536|ref|ZP_16971984.1| hypothetical protein ESQG_03479 [Escherichia coli H494]
gi|371593784|gb|EHN82660.1| hypothetical protein ESQG_03479 [Escherichia coli H494]
Length = 265
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L ++ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIIWLFSGV 109
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFS-DIKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N SL G +E I GP + LG+Y S + N
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGN 252
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFS-DIKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N SL G +E I GP + LG+Y S + N
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGN 252
>gi|441521785|ref|ZP_21003443.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
gi|441458723|dbj|GAC61404.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
Length = 248
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 137 LLAVNVLVYIA---QFATQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+AVN+ +IA Q LLL GA + L + ++WRL TS FLH +I H+
Sbjct: 32 LIAVNLAAFIAVVLQAGGTSNLLLKSSIMQQGALVTGLGLENEYWRLLTSGFLHWSILHV 91
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+N SL IG +E++ GP RYL VY
Sbjct: 92 AMNMISLYLIGADLERVLGPARYLAVYL 119
>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 282 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 341
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ + C+ L + GP + + G + +Y I+ N
Sbjct: 342 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGN 378
>gi|374313630|ref|YP_005060060.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358755640|gb|AEU39030.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 225
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKINSL-IDKGQFWRLATSAFLHANI 184
T L+A+NVLV+ A A T + WG L + Q+WRL TS FLH I
Sbjct: 24 TYALIAINVLVFAAMVASGVSFTEPTALDVANWGGDFGPLTVGAHQWWRLLTSCFLHFGI 83
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ N Y L IGP +E G RYL +YF + + +
Sbjct: 84 IHIGFNMYVLFQIGPFIEMAFGRIRYLLIYFFAGLGGS 121
>gi|159485784|ref|XP_001700924.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158281423|gb|EDP07178.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 440
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
RQ TN+ LA+NV Y+ T ++L A I + +G++ RL T+ FLH + HL+ N
Sbjct: 233 RQVTNLFLAINVATYLVAR-TDRSVVLAMAAIPHEVARGEWHRLLTAGFLHTDFLHLLSN 291
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+L+ +GP +E G R+ +Y S +A + +
Sbjct: 292 MLALHWLGPDLESAAGRGRFAAIYLLSVVAGSAA 325
>gi|415885504|ref|ZP_11547432.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
gi|387591173|gb|EIJ83492.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
Length = 518
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI++G++WR T FLH + HL++N +L +G +E+I G R++ +Y
Sbjct: 211 LIRFGAKFNPLINEGEWWRFFTPIFLHIGLLHLLMNTLALYYLGTVVERIYGNVRFMLIY 270
Query: 215 FSSAIASN 222
++ A +
Sbjct: 271 LAAGFAGS 278
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + +G++WRL T FLH +I HL+ N ++L GP +E++ G ++L VY S
Sbjct: 45 GVGFNLAVSQGEYWRLITPVFLHVSIGHLVFNSFALVIFGPALERMLGKGKFLFVYLLSG 104
Query: 219 IASN 222
+N
Sbjct: 105 FIAN 108
>gi|407797237|ref|ZP_11144183.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407018431|gb|EKE31157.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 204
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
ILL + + V+ FA + K L G N L+ +G++WRL T FLHA ++H + N ++L
Sbjct: 26 ILLWLIMDVFSFPFAVEWKQL--GVGNNFLVSQGEYWRLLTPIFLHAGLSHTLFNSFTLV 83
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
GP +E++ G +++ Y + IA N
Sbjct: 84 LFGPALERMLGKVKFIIAYLLAGIAGN 110
>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]
Length = 486
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ + C+ L + GP + + G + +Y I+ N
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGN 341
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+LVY+ + + + +G N I +GQ+WR T FLH + HL+ N +SL
Sbjct: 21 LIALNLLVYVLMWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHNGVMHLLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVY 214
GP +E++ G R+ +Y
Sbjct: 81 FLFGPELERLTGKVRFTTIY 100
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++NVLV++ Q + +L LW + S
Sbjct: 15 REGARTVRQPRTQ-FGGRQRSATPVVTYTLISLNVLVFVMQVTVMGLERQLALWPPGVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGS 127
>gi|388510370|gb|AFK43251.1| unknown [Lotus japonicus]
Length = 154
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
M+NC+SLNS+GPT+E+ GPRR+L VYF SAIAS+
Sbjct: 1 MINCFSLNSVGPTVERFSGPRRFLAVYFISAIASS 35
>gi|74786305|sp|Q695T9.1|RHBL2_TOXGO RecName: Full=Rhomboid-like protease 2
gi|47500377|gb|AAT29066.1| rhomboid-like protease 2 [Toxoplasma gondii]
Length = 283
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N + IG TME+ G + L VYF + +N
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLAN 161
>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]
Length = 585
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ + C+ L + GP + + G + +Y I+ N
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGN 341
>gi|430805416|ref|ZP_19432531.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
gi|429502334|gb|ELA00646.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
Length = 533
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVLV++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 178 VIAVNVLVWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 237
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N L +G +E+ G R +L +Y + +
Sbjct: 238 ANMVVLYLLGKHVERFFGTRSFLLIYVGAGL 268
>gi|51860142|gb|AAU11321.1| rhomboid 2 [Toxoplasma gondii]
gi|221481683|gb|EEE20059.1| rhomboid 2 protease [Toxoplasma gondii GT1]
Length = 284
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N + IG TME+ G + L VYF + +N
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLAN 161
>gi|256958014|ref|ZP_05562185.1| membrane-associated serine protease [Enterococcus faecalis DS5]
gi|256948510|gb|EEU65142.1| membrane-associated serine protease [Enterococcus faecalis DS5]
Length = 236
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N ++ IG +E I G RYLG+Y S IA N
Sbjct: 79 ILNMVTIYYIGAQVEAIYGHWRYLGIYLLSGIAGN 113
>gi|221502248|gb|EEE27986.1| peptidase, S54 family protein [Toxoplasma gondii VEG]
Length = 283
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N + IG TME+ G + L VYF + +N
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLAN 161
>gi|350266688|ref|YP_004877995.1| hypothetical protein GYO_2752 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599575|gb|AEP87363.1| YqgP [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 507
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH I HL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGITHLAFNTLALWSVGTVVERMYGSGRFLL 263
Query: 213 VYFSSAI 219
+Y ++ I
Sbjct: 264 IYLAAGI 270
>gi|218679679|ref|ZP_03527576.1| hypothetical protein RetlC8_12631 [Rhizobium etli CIAT 894]
Length = 376
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLAV V VY + A + L+L G S+++
Sbjct: 174 FDGARYPVF-----TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLVLGGTFRPSIVE 228
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++WRL T+ F+HA I HL NC+ L G E++ G R + ++F+SA+ +
Sbjct: 229 GAEWWRLFTAPFMHAGIVHLASNCFCLWMAGMLFERLIGWRWFAAIFFASALGGS 283
>gi|432480048|ref|ZP_19722012.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE210]
gi|431009897|gb|ELD24501.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE210]
Length = 625
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|56963491|ref|YP_175222.1| hypothetical protein ABC1726 [Bacillus clausii KSM-K16]
gi|56909734|dbj|BAD64261.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 523
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQFATQ------DKLLLWGAKINSLIDKGQFWRLATS 177
R LF G+ L +++L+ + + L+ +GAK N LI +G++WRL ++
Sbjct: 174 RQTLFFGKPRVIYALLISILIMFSVLEANGGSTNIETLIDFGAKYNPLIVEGEWWRLFSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
FLH HL +N +L +G +E++ G R+L +YF + +
Sbjct: 234 MFLHIGFFHLFMNGMALYFLGSAVEQLFGSIRFLVIYFMAGL 275
>gi|332281798|ref|ZP_08394211.1| peptidase [Shigella sp. D9]
gi|417247117|ref|ZP_12040218.1| peptidase, S54 family [Escherichia coli 9.0111]
gi|332104150|gb|EGJ07496.1| peptidase [Shigella sp. D9]
gi|386209745|gb|EII20232.1| peptidase, S54 family [Escherichia coli 9.0111]
Length = 625
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|434384588|ref|YP_007095199.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
gi|428015578|gb|AFY91672.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
Length = 528
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
TN ++A+NVL++ A+ Q K+ + WG L+ GQ+WR+ T+ FLH I H
Sbjct: 329 TNFIIAINVLIFCAELFWQSKIGDKDFTFIPWGGLSAPLVVGGQWWRIITANFLHMGILH 388
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
L +N +L +G +E G +YL Y + + S
Sbjct: 389 LGMNMLALLYLGKFVEYRLGTWKYLFAYLVAGLGS 423
>gi|300694566|ref|YP_003750539.1| rhomboid protease [Ralstonia solanacearum PSI07]
gi|299076603|emb|CBJ35939.1| putative rhomboid protease [Ralstonia solanacearum PSI07]
Length = 543
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATLGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HL +N L + G +E+I GP YL +Y + +
Sbjct: 242 HLAINVIGLYATGIAVERIYGPAAYLLIYLGAGL 275
>gi|432615475|ref|ZP_19851606.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE75]
gi|431157341|gb|ELE57985.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE75]
Length = 625
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L ++ S I
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGI 109
>gi|420345839|ref|ZP_14847268.1| rhomboid family protein [Shigella boydii 965-58]
gi|391275891|gb|EIQ34674.1| rhomboid family protein [Shigella boydii 965-58]
Length = 265
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|94312789|ref|YP_585998.1| intramembrane serine protease [Cupriavidus metallidurans CH34]
gi|93356641|gb|ABF10729.1| putative intramembrane serine protease [Cupriavidus metallidurans
CH34]
Length = 554
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVL+++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 199 MIAVNVLIWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
N L +G +E+ G R +L +Y + +
Sbjct: 259 ANMVVLYLLGTHVERFFGTRSFLLIYVGAGL 289
>gi|331682074|ref|ZP_08382698.1| outer membrane protein [Escherichia coli H299]
gi|450186095|ref|ZP_21889397.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
gi|331080753|gb|EGI51927.1| outer membrane protein [Escherichia coli H299]
gi|449324675|gb|EMD14600.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
Length = 625
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L ++ S I
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGI 109
>gi|116619460|ref|YP_821616.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116222622|gb|ABJ81331.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 280
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 14/100 (14%)
Query: 134 TNILLAVNVLVYI--AQFATQD------------KLLLWGAKINSLIDKGQFWRLATSAF 179
T I+L +N+ +YI A F+ Q L+ +GAK + L+ +G++WRL T+ F
Sbjct: 57 TTIILLMNIGLYIVTAVFSLQSGNSDAFFNLDGRTLIAFGAKFDPLLAQGEWWRLVTAGF 116
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
LH + H+ +N ++L +G +E+ G R +YF + +
Sbjct: 117 LHGGMLHIFMNTWALFGLGAQVEETFGSSRMWVIYFVATV 156
>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746
[Cucumis sativus]
Length = 479
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++C++L + G + + GP + +Y ++ N
Sbjct: 292 ALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGN 326
>gi|257064883|ref|YP_003144555.1| membrane protein [Slackia heliotrinireducens DSM 20476]
gi|256792536|gb|ACV23206.1| uncharacterized membrane protein [Slackia heliotrinireducens DSM
20476]
Length = 267
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 137 LLAVNVLVY--IAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +NV+V+ + L+ A + +SL+D GQ++ L TS FLH + HL+ N
Sbjct: 14 LIVINVVVFAVLEVLGMTQGYTLYNAGVLTTSSLLD-GQYYTLITSMFLHGGLMHLLCNM 72
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++ IG +E + GP R+L +YF S IA
Sbjct: 73 ITMYYIGTVIEDVFGPVRFLIIYFLSGIAGG 103
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ L+ GQ++R+ T+ F+H HL+ N Y+L +G +E + G ++L YF
Sbjct: 35 LLFGAQYGPLVSSGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFFYF 94
Query: 216 SSAIASN 222
S+ I N
Sbjct: 95 STGIIGN 101
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFATQD--KLLLWGAKINSL-IDKGQFWRLATSAFLHANIAHLMVN 190
T +A++V++++ Q A QD +LL+ +NSL + GQ++RL TS FLH HL+ N
Sbjct: 67 TYTFIAISVVMFVVQLAAQDVERLLV----LNSLAVADGQWYRLLTSTFLHFGPVHLLFN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +E G R+ +Y + A+ +
Sbjct: 123 MWALYVVGPPLESALGRLRFTALYLAGALGGS 154
>gi|392531337|ref|ZP_10278474.1| membrane endopeptidase [Carnobacterium maltaromaticum ATCC 35586]
gi|414084202|ref|YP_006992910.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
gi|412997786|emb|CCO11595.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
Length = 236
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L+GAK N LI G +WRL T FLH HL VN + IG +EKI G R+ +Y
Sbjct: 46 LILFGAKFNPLIVMGDWWRLITPMFLHIGWLHLAVNSVCVYYIGTHLEKIMGHWRFALIY 105
Query: 215 FSSAIASN 222
S +A N
Sbjct: 106 LLSGVAGN 113
>gi|436838188|ref|YP_007323404.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
gi|384069601|emb|CCH02811.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
Length = 251
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV++ T L+ WGA L GQ WRL T+ FLH +
Sbjct: 30 TPILMGINILVFVGMVLTGVNIMSPTGQDLVNWGANYTPLTYGGQPWRLLTACFLHIGLI 89
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRY 210
H++VN SL +G +E + G R+
Sbjct: 90 HIVVNMMSLRVLGSQIEPLLGTSRF 114
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NV ++I D L+ GAK + LI G++WR+ TS F+H HL+
Sbjct: 192 TYALLVMNVFIFILIELYGDSESILTLVEVGAKYSPLILDGEWWRIITSMFIHIGFLHLL 251
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+N +L +G +E+I G R++ +YF++ +
Sbjct: 252 MNSLALYFLGTLVERIYGSFRFVFIYFTAGV 282
>gi|337283825|ref|YP_004623299.1| Peptidase [Pyrococcus yayanosii CH1]
gi|334899759|gb|AEH24027.1| Peptidase, putative [Pyrococcus yayanosii CH1]
Length = 198
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSL 194
LL + LV+I + D ++ A+IN L+ GQ+WRL T+ F+H H +N + L
Sbjct: 18 LLTIIALVFIYELIVGFDTAIVQLAQINLLVFYAGQWWRLVTAIFVHMGFIHFALNTFWL 77
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +E I G +R+L V+F SAI N
Sbjct: 78 FYLGMDLEGIVGSKRFLLVFFLSAIVGN 105
>gi|300927237|ref|ZP_07142969.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|301329188|ref|ZP_07222179.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|450211629|ref|ZP_21894406.1| rhomboid family protein [Escherichia coli O08]
gi|300416803|gb|EFK00114.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|300844476|gb|EFK72236.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|449322428|gb|EMD12420.1| rhomboid family protein [Escherichia coli O08]
Length = 625
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L ++ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIIWLFSGV 109
>gi|344175988|emb|CCA87141.1| putative rhomboid protease [Ralstonia syzygii R24]
Length = 543
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATPGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HL++N L + G +E+I GP YL +Y + +
Sbjct: 242 HLVINVIGLYATGIAVERIYGPAAYLLIYLGAGL 275
>gi|347534329|ref|YP_004840999.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504385|gb|AEN99067.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 223
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ + V+ +I FA + L+ +GA+ N LI GQ WRL T F+H HL+
Sbjct: 12 TYFLIGIMVIYFIFMTFAGGTSNNNVLIEFGAEYNPLIKAGQIWRLITPIFIHIGYQHLI 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N L +G +EK G RYL ++ S I N
Sbjct: 72 LNMIVLYFLGSIIEKFYGHFRYLIIFLVSGIVGN 105
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 104 NGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLL------- 156
+G G ++ H T T T+ R T +L+ VN+LV++ Q + D+
Sbjct: 58 SGTGHAPSASHPRTIAGGTVTTD---PRLLTKLLVGVNLLVFLVQLSLGDRFTDRFDLIG 114
Query: 157 -LWGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
W ++ S + +GQ++RL TS FLH ++ H+ N SL +G +E G RY+
Sbjct: 115 RAWVPELGSTLQGVAEGQWYRLLTSMFLHGSVMHIAFNMLSLWWLGGPLEAALGRARYIA 174
Query: 213 VYFSSAIASN 222
+YF S +A
Sbjct: 175 LYFVSGLAGG 184
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +N I +G+ WRL T F+H+ AH++ N +SL GP +E++ G R+L VY S +
Sbjct: 47 SGVNLYIMEGEVWRLITPTFMHSGFAHMLFNSFSLVLFGPALERMLGGGRFLFVYLLSGL 106
Query: 220 ASN 222
+N
Sbjct: 107 IAN 109
>gi|432380300|ref|ZP_19623258.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE15]
gi|432386071|ref|ZP_19628969.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE16]
gi|432512872|ref|ZP_19750108.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE224]
gi|432610348|ref|ZP_19846520.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE72]
gi|432645106|ref|ZP_19880906.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE86]
gi|432654904|ref|ZP_19890617.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE93]
gi|432697983|ref|ZP_19933151.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE169]
gi|432744603|ref|ZP_19979304.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE43]
gi|432903009|ref|ZP_20112626.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE194]
gi|432942624|ref|ZP_20139883.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE183]
gi|432970790|ref|ZP_20159668.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE207]
gi|432984306|ref|ZP_20173044.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE215]
gi|433037609|ref|ZP_20225226.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE113]
gi|433081560|ref|ZP_20268034.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE133]
gi|433100186|ref|ZP_20286296.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE145]
gi|433143253|ref|ZP_20328421.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE168]
gi|433187461|ref|ZP_20371581.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE88]
gi|430909577|gb|ELC30943.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE16]
gi|430911560|gb|ELC32843.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE15]
gi|431044430|gb|ELD54703.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE224]
gi|431151166|gb|ELE52201.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE72]
gi|431183884|gb|ELE83657.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE86]
gi|431194298|gb|ELE93563.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE93]
gi|431246693|gb|ELF40951.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE169]
gi|431295076|gb|ELF85247.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE43]
gi|431436539|gb|ELH18054.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE194]
gi|431453676|gb|ELH34060.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE183]
gi|431485927|gb|ELH65584.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE207]
gi|431506049|gb|ELH84653.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE215]
gi|431555144|gb|ELI29002.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE113]
gi|431605395|gb|ELI74784.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE133]
gi|431622309|gb|ELI91090.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE145]
gi|431665824|gb|ELJ32534.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE168]
gi|431709096|gb|ELJ73593.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE88]
Length = 625
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L ++ S +
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGV 109
>gi|441518028|ref|ZP_20999756.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455057|dbj|GAC57717.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 244
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 14/91 (15%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG----------QFWRLATSAFLHANIAH 186
L+AVN++++ A A + AK +S+++ G ++WRL TS FLH+++ H
Sbjct: 30 LIAVNLVLFAAAMAQS----VGNAKASSIMNDGALYSNRHLVFEYWRLLTSGFLHSSVPH 85
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
L +N SL +G +E++ GP RYL +Y S
Sbjct: 86 LALNMISLYIVGRELERLFGPARYLTIYLMS 116
>gi|222155404|ref|YP_002555543.1| hypothetical protein LF82_073 [Escherichia coli LF82]
gi|387615935|ref|YP_006118957.1| outer membrane protein [Escherichia coli O83:H1 str. NRG 857C]
gi|222032409|emb|CAP75148.1| hypothetical protein LF82_073 [Escherichia coli LF82]
gi|312945196|gb|ADR26023.1| outer membrane protein [Escherichia coli O83:H1 str. NRG 857C]
Length = 625
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L ++ S +
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGV 109
>gi|418995635|ref|ZP_13543249.1| rhomboid family protein [Escherichia coli DEC1A]
gi|377849025|gb|EHU14001.1| rhomboid family protein [Escherichia coli DEC1A]
Length = 199
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|290958988|ref|YP_003490170.1| hypothetical protein SCAB_45641 [Streptomyces scabiei 87.22]
gi|260648514|emb|CBG71625.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 297
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL------IDKGQFWRLATSAF 179
R T IL+ VN+L+++ Q D L+ A + L + +GQ++RL TS F
Sbjct: 82 RLLTKILIGVNLLLFLVQQILGDTFTDRFDLIGRAWVPELGTSLQGVAEGQWYRLVTSMF 141
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LH ++ H++ N SL IG +E G RYL +YF+S +A +
Sbjct: 142 LHGSVTHILFNMLSLWWIGGPLEAALGRARYLTLYFASGLAGS 184
>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]
Length = 477
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++C++L + G + + GP + +Y ++ N
Sbjct: 292 ALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGN 326
>gi|157159255|ref|YP_001461827.1| S54 family peptidase [Escherichia coli E24377A]
gi|157081285|gb|ABV20993.1| peptidase, S54 (rhomboid) family [Escherichia coli E24377A]
Length = 625
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYFAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|191168690|ref|ZP_03030470.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|309795475|ref|ZP_07689892.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
gi|190901282|gb|EDV61051.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|308120850|gb|EFO58112.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
Length = 625
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYFAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|331656677|ref|ZP_08357639.1| outer membrane protein [Escherichia coli TA206]
gi|331054925|gb|EGI26934.1| outer membrane protein [Escherichia coli TA206]
Length = 502
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|149199790|ref|ZP_01876820.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
gi|149137078|gb|EDM25501.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
Length = 454
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Query: 134 TNILLAVNVLVYIAQFATQ----------DKLLLWGA-KINSLIDKGQFWRLATSAFLHA 182
T +++A+N++V+ + + D + WG+ +I ID+ WRL T AF+H
Sbjct: 115 TTVIIALNIIVFFLMYGIEKLNIIQPKNLDVFIQWGSNRIFETIDEP--WRLFTCAFIHF 172
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+ H+ N Y L++IG EK+ GPR Y +Y SA
Sbjct: 173 GLLHIACNMYFLHAIGRLSEKLLGPRFYFIIYIFSA 208
>gi|117921729|ref|YP_870921.1| rhomboid family protein [Shewanella sp. ANA-3]
gi|117614061|gb|ABK49515.1| Rhomboid family protein [Shewanella sp. ANA-3]
Length = 525
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ F +Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 333 TPILLYINTLIFVLMAFVSQHVIALPNSVLLDWGANLRQLVLEQQVWRLISNVFLHGGLM 392
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ N Y L G +E + G R L VY + ++
Sbjct: 393 HLVFNLYGLFFAGMFLEPLLGKWRLLWVYLCCGLVAS 429
>gi|259503580|ref|ZP_05746482.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259168453|gb|EEW52948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 219
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+A+ ++VY+ T L+ +GA + + G++WRL T F+H AHL+
Sbjct: 12 TVVLIAIQLVVYLLMTLAGGSTTPAVLIRFGALQAAAVQAGEWWRLLTPVFVHIGFAHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L IG +E++ G R L +Y SAI N
Sbjct: 72 INSITLYFIGMYIEQLFGHWRMLVIYLGSAIVGN 105
>gi|328957643|ref|YP_004375029.1| membrane endopeptidase [Carnobacterium sp. 17-4]
gi|328673967|gb|AEB30013.1| membrane endopeptidase [Carnobacterium sp. 17-4]
Length = 229
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T LL + +L ++ T D L+ +GAK N I G++WRL T FLH H
Sbjct: 13 TYALLIIQILAFVLM--TLDGGSTNVATLIKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 70
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L++N L +G +E + G R+ G+Y S IA N
Sbjct: 71 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGN 106
>gi|417128656|ref|ZP_11975443.1| peptidase, S54 family [Escherichia coli 97.0246]
gi|386143612|gb|EIG90088.1| peptidase, S54 family [Escherichia coli 97.0246]
Length = 625
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|160874113|ref|YP_001553429.1| rhomboid family protein [Shewanella baltica OS195]
gi|378707356|ref|YP_005272250.1| rhomboid family protein [Shewanella baltica OS678]
gi|418024255|ref|ZP_12663238.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
gi|160859635|gb|ABX48169.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315266345|gb|ADT93198.1| Rhomboid family protein [Shewanella baltica OS678]
gi|353536215|gb|EHC05774.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
Length = 541
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ NVLV+I +++Q LL WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYFNVLVFILMAWSSQHFINLQGSFLLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N Y L +G +E + G R Y + I ++
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILAS 426
>gi|429205379|ref|ZP_19196656.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
gi|428146451|gb|EKW98690.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
Length = 224
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ +N++V++ A +T ++L ++GAK + +G++WRL + FLH I HL
Sbjct: 24 TYILIGINLVVFMGTVFAGGSTDIRVLYMFGAKFTPALLQGEWWRLIAAMFLHDGIGHLF 83
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L IGP +E G R L +Y S + N
Sbjct: 84 INMITLYFIGPEIEDHYGHARMLVIYLLSGLYGN 117
>gi|418423189|ref|ZP_12996358.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
gi|363993164|gb|EHM14390.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
Length = 252
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATLSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 132
>gi|407796208|ref|ZP_11143164.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407019562|gb|EKE32278.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 507
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I +G++WRL +S FLH + HL++N +L +G +E+I G R+ +Y
Sbjct: 210 LIEYGAKYNPGIIEGEWWRLISSMFLHIGVLHLLMNMLALFYLGTAVEQIYGSFRFTMIY 269
Query: 215 FSSAI 219
F + I
Sbjct: 270 FLAGI 274
>gi|373950714|ref|ZP_09610675.1| Rhomboid family protein [Shewanella baltica OS183]
gi|386323452|ref|YP_006019569.1| rhomboid family protein [Shewanella baltica BA175]
gi|333817597|gb|AEG10263.1| Rhomboid family protein [Shewanella baltica BA175]
gi|373887314|gb|EHQ16206.1| Rhomboid family protein [Shewanella baltica OS183]
Length = 538
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N Y L +G +E + G R Y + I ++
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILAS 426
>gi|373464451|ref|ZP_09555990.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
gi|371762653|gb|EHO51182.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
Length = 220
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYI---AQFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V+V++ T D L+ +GAK N I G++WRL T F+H H+++N
Sbjct: 14 LLAIMVIVFLTMTVMGGTTDPGTLVRFGAKYNPAIRAGEYWRLITPMFIHIGFTHILMNG 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L IG +E++ G R+L ++ S I N
Sbjct: 74 ITLYFIGEYVEQLFGHWRFLTIFLVSGIVGN 104
>gi|339448421|ref|ZP_08651977.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 224
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LL V V++Y+ LL +GA+ N L+ GQ+WRL T F+H H++
Sbjct: 16 TYLLLFVMVVIYLLMTMNGGSENVFNLLKFGAQSNQLVRDGQWWRLITPIFVHIGFQHIL 75
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L +G +E I G RY ++ S I N
Sbjct: 76 INGITLYYLGKLIEPIVGHLRYFIIFMVSGICGN 109
>gi|422015063|ref|ZP_16361669.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
gi|414100115|gb|EKT61738.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
Length = 291
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+ +N+ +Y+ Q FA+ +D LLL+GA + L G +WR S LH+N H
Sbjct: 25 TLILVLLNIGIYLYQLSFASPLESREDNLLLFGANVYQLSLTGDWWRYPISMVLHSNSVH 84
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
L NC +L IG E+ G R L +Y S I +
Sbjct: 85 LGFNCLALFVIGIECERAYGKFRLLAIYIISGIGA 119
>gi|417688423|ref|ZP_12337667.1| rhomboid family protein [Shigella boydii 5216-82]
gi|332094328|gb|EGI99379.1| rhomboid family protein [Shigella boydii 5216-82]
Length = 625
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|416287203|ref|ZP_11648807.1| Putative membrane protein [Shigella boydii ATCC 9905]
gi|320178447|gb|EFW53415.1| Putative membrane protein [Shigella boydii ATCC 9905]
Length = 625
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 137 LLAVNVLVY----IAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNVL+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVLILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y+L +G +E + G ++L YF S I N
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGN 101
>gi|332686104|ref|YP_004455878.1| GlpG protein [Melissococcus plutonius ATCC 35311]
gi|332370113|dbj|BAK21069.1| GlpG protein, membrane protein of glp regulon [Melissococcus
plutonius ATCC 35311]
Length = 234
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINS--LIDKGQFWRLATSAFLHANIAH 186
T L+ + V++++A +F+ + L+ +GA + LI+K ++WRL T FLH H
Sbjct: 17 TYCLIGITVIIFLAMEFSGGSENSRVLIQFGALVRPYILINK-EYWRLFTPIFLHIGWMH 75
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L++N +L IG +E+I G RYLG+Y S IA N
Sbjct: 76 LILNMVTLYYIGEQIERIYGHWRYLGIYLLSGIAGN 111
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N LI +G++WRL T F+H+ H++ N +SL GP +E + G ++ VY + +A+N
Sbjct: 50 NFLISEGEYWRLVTPIFVHSGFGHMLFNSFSLVLFGPALESMLGKVKFTVVYLLTGVAAN 109
>gi|187735290|ref|YP_001877402.1| rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425342|gb|ACD04621.1| Rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
Length = 291
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 121 DTARTNLFIGRQWTNI--LLAVNVLVYIAQFATQ-------------DKLLLWGAKIN-S 164
DT R +LF R + L+ +NV+++I F Q D + L+GA +
Sbjct: 10 DTVRNHLFDQRSAVMVHWLILLNVVIFILGFFFQVDIPRNIYPPVHLDLIQLYGAYSEYT 69
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+G+ WRL T FLHAN+ H+M N +L GP +E+ G R+L Y +A+
Sbjct: 70 CFHEGELWRLLTYQFLHANLGHIMFNMIALWFFGPVVEERFGHWRFLLYYLFCGVAA 126
>gi|390456491|ref|ZP_10242019.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
peoriae KCTC 3763]
Length = 207
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +++ P +E++ G RY+ +Y + I N
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGN 112
>gi|418251560|ref|ZP_12877691.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|420934166|ref|ZP_15397439.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|420935691|ref|ZP_15398961.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|420944426|ref|ZP_15407681.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|420949678|ref|ZP_15412927.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|420954531|ref|ZP_15417773.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|420958705|ref|ZP_15421939.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
gi|420963609|ref|ZP_15426833.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|420994639|ref|ZP_15457785.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|420995600|ref|ZP_15458743.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|421004948|ref|ZP_15468070.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|353448717|gb|EHB97118.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|392132578|gb|EIU58323.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|392146032|gb|EIU71756.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|392147198|gb|EIU72919.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|392150719|gb|EIU76432.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|392153444|gb|EIU79151.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|392180741|gb|EIV06393.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|392191420|gb|EIV17045.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|392193651|gb|EIV19275.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|392246522|gb|EIV71999.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|392248431|gb|EIV73907.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
Length = 232
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 11 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 70
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 71 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 112
>gi|300767209|ref|ZP_07077121.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|380032412|ref|YP_004889403.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|418275176|ref|ZP_12890499.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495028|gb|EFK30184.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|342241655|emb|CCC78889.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|376008727|gb|EHS82056.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 227
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLVFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + +G +E + G R L +Y I+ N
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGN 107
>gi|365872871|ref|ZP_09412407.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|363992937|gb|EHM14164.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
Length = 252
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 132
>gi|402298151|ref|ZP_10817865.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
gi|401726654|gb|EJS99873.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
Length = 249
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 134 TNILLAVNVLVY--IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
IL+A++VL++ I + + G +N + G +WRL T F+H H++ N
Sbjct: 18 ITILVAIHVLIFFWINLLPGGEWIYYHGVGLNLAVHNGDYWRLVTPIFMHVGFMHVIFNS 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL GP +E++ G R++ +Y SS I +N
Sbjct: 78 VSLILFGPPLEQMLGKFRFILLYLSSGIIAN 108
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T L+AVNVLV++ Q + + ++ D G+F+RL TSAFLH + H++ N ++
Sbjct: 39 TYTLIAVNVLVFLLQAVLPGFTREFVLQPYAVAD-GEFYRLLTSAFLHYGLTHILFNMWA 97
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L +GP +E G R++G+Y SA+ +
Sbjct: 98 LYVVGPALEAALGRLRFVGLYALSALGGS 126
>gi|115445857|ref|NP_001046708.1| Os02g0326700 [Oryza sativa Japonica Group]
gi|46390267|dbj|BAD15696.1| rhomboid family protein-like [Oryza sativa Japonica Group]
gi|46390870|dbj|BAD16387.1| rhomboid family protein-like [Oryza sativa Japonica Group]
gi|113536239|dbj|BAF08622.1| Os02g0326700 [Oryza sativa Japonica Group]
gi|215694311|dbj|BAG89304.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 347
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
TN+L A+N+ V + + A+ + L++GAKIN LI G++WRL T LH+
Sbjct: 209 TNLLAAINIAVLLFEIASPVRNSDIENLSLPLMYGAKINDLILSGEWWRLLTPMCLHSGF 268
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ + C+ L GP + + G +L +Y + N
Sbjct: 269 LHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGN 306
>gi|254556483|ref|YP_003062900.1| hypothetical protein JDM1_1316 [Lactobacillus plantarum JDM1]
gi|308180426|ref|YP_003924554.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448821092|ref|YP_007414254.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
gi|254045410|gb|ACT62203.1| integral membrane protein [Lactobacillus plantarum JDM1]
gi|308045917|gb|ADN98460.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448274589|gb|AGE39108.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
Length = 227
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLIFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + +G +E + G R L +Y I+ N
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGN 107
>gi|256545972|ref|ZP_05473327.1| S54 (rhomboid) family peptidase [Anaerococcus vaginalis ATCC 51170]
gi|256398394|gb|EEU12016.1| S54 (rhomboid) family peptidase [Anaerococcus vaginalis ATCC 51170]
Length = 216
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ +N+LV+I T + LL + A + G++WRL F+H I HL+
Sbjct: 2 TRILMGINILVFILMTVTGGSENIENLLRFNAMSKIYVYYGEWWRLFCPIFIHIGIIHLL 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N Y LN++G E + G ++L +Y I N
Sbjct: 62 MNMYFLNNVGDEFESLYGSTKFLIIYLLCGIMGN 95
>gi|397678270|ref|YP_006519805.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
gi|395456535|gb|AFN62198.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
Length = 287
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 167
>gi|417288734|ref|ZP_12076019.1| peptidase, S54 family [Escherichia coli TW07793]
gi|386247526|gb|EII93699.1| peptidase, S54 family [Escherichia coli TW07793]
Length = 625
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|375308022|ref|ZP_09773309.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
gi|375080353|gb|EHS58574.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
Length = 207
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAIFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +++ P +E++ G RY+ +Y + I N
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGN 112
>gi|237832263|ref|XP_002365429.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
gi|211963093|gb|EEA98288.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
Length = 283
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N + IG T+E+ G + L VYF + +N
Sbjct: 128 MNLWVQIRIGLTIEEKYGWKMLLAVYFGVGVLAN 161
>gi|312965097|ref|ZP_07779334.1| rhomboid family protein [Escherichia coli 2362-75]
gi|312290188|gb|EFR18071.1| rhomboid family protein [Escherichia coli 2362-75]
Length = 625
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|417754419|ref|ZP_12402514.1| rhomboid family protein [Escherichia coli DEC2B]
gi|419000808|ref|ZP_13548367.1| rhomboid family protein [Escherichia coli DEC1B]
gi|419006320|ref|ZP_13553776.1| rhomboid family protein [Escherichia coli DEC1C]
gi|419017090|ref|ZP_13564416.1| rhomboid family protein [Escherichia coli DEC1E]
gi|419022782|ref|ZP_13570024.1| rhomboid family protein [Escherichia coli DEC2A]
gi|419027591|ref|ZP_13574790.1| rhomboid family protein [Escherichia coli DEC2C]
gi|419033082|ref|ZP_13580180.1| rhomboid family protein [Escherichia coli DEC2D]
gi|419038371|ref|ZP_13585431.1| rhomboid family protein [Escherichia coli DEC2E]
gi|377851121|gb|EHU16076.1| rhomboid family protein [Escherichia coli DEC1C]
gi|377853455|gb|EHU18354.1| rhomboid family protein [Escherichia coli DEC1B]
gi|377867064|gb|EHU31828.1| rhomboid family protein [Escherichia coli DEC1E]
gi|377868420|gb|EHU33164.1| rhomboid family protein [Escherichia coli DEC2A]
gi|377879365|gb|EHU43938.1| rhomboid family protein [Escherichia coli DEC2B]
gi|377883501|gb|EHU48019.1| rhomboid family protein [Escherichia coli DEC2D]
gi|377885474|gb|EHU49969.1| rhomboid family protein [Escherichia coli DEC2C]
gi|377898615|gb|EHU62975.1| rhomboid family protein [Escherichia coli DEC2E]
Length = 625
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|428672237|gb|EKX73151.1| conserved hypothetical protein [Babesia equi]
Length = 425
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 140 VNVLVYIAQFATQDKLLLWGAKIN-------SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ VLV + F LL G+ N ++ +G+F+R+ TS F+H+ HL+ N
Sbjct: 153 IQVLVKLNYFLFVCDFLLGGSIFNLFKLDGGAIFGRGEFYRIITSLFVHSGFTHLVSNIS 212
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL SIG +I GP+R L +Y S I +N
Sbjct: 213 SLISIGDKSLRILGPKRLLTIYLVSGIVAN 242
>gi|419714376|ref|ZP_14241793.1| rhomboid family protein [Mycobacterium abscessus M94]
gi|382945655|gb|EIC69948.1| rhomboid family protein [Mycobacterium abscessus M94]
Length = 247
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 127
>gi|414584256|ref|ZP_11441396.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|420881430|ref|ZP_15344797.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|420884483|ref|ZP_15347843.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|420887277|ref|ZP_15350635.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|420896232|ref|ZP_15359571.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|420901413|ref|ZP_15364744.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|420907312|ref|ZP_15370630.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|420974770|ref|ZP_15437960.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|421052000|ref|ZP_15514994.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|392080246|gb|EIU06072.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|392086339|gb|EIU12164.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|392093991|gb|EIU19787.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|392095544|gb|EIU21339.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|392098774|gb|EIU24568.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|392105216|gb|EIU31002.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|392119408|gb|EIU45176.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|392159888|gb|EIU85581.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|392240603|gb|EIV66096.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898]
Length = 247
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 127
>gi|215485689|ref|YP_002328120.1| hypothetical protein E2348C_0549 [Escherichia coli O127:H6 str.
E2348/69]
gi|215263761|emb|CAS08097.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
Length = 625
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|425298821|ref|ZP_18688871.1| hypothetical protein EC07798_0755 [Escherichia coli 07798]
gi|408221824|gb|EKI45757.1| hypothetical protein EC07798_0755 [Escherichia coli 07798]
Length = 625
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|420866475|ref|ZP_15329864.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|420871266|ref|ZP_15334648.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|420875716|ref|ZP_15339092.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|420988850|ref|ZP_15452006.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|421040347|ref|ZP_15503355.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|421046065|ref|ZP_15509065.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
gi|392065191|gb|EIT91040.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|392067191|gb|EIT93039.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|392070736|gb|EIT96583.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|392183129|gb|EIV08780.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|392221275|gb|EIV46798.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|392235518|gb|EIV61016.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
Length = 247
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 127
>gi|441514647|ref|ZP_20996463.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
gi|441450558|dbj|GAC54424.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
Length = 294
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRL 174
ART L G+ + T L+ +N+LV+ +AQ D + G + S + G++WRL
Sbjct: 59 ARTRLSEGKPYVTYTLIGINILVFLLCVAQAGFGDPGAATIFSSGDLLKSDVAAGEYWRL 118
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
TS FLH ++ H+ VN SL +G +E G RYL VY + + + +
Sbjct: 119 LTSGFLHFSVMHVAVNMLSLYILGRDLELALGMARYLAVYLIALLGGSAA 168
>gi|421036084|ref|ZP_15499101.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
gi|392219936|gb|EIV45460.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
Length = 252
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 132
>gi|419710435|ref|ZP_14237901.1| rhomboid family protein [Mycobacterium abscessus M93]
gi|382941267|gb|EIC65587.1| rhomboid family protein [Mycobacterium abscessus M93]
Length = 247
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAEGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 127
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 155 LLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+++W + N+ + G++WRL T FLHAN HL+ N SL P +E++ G R+L
Sbjct: 39 VMMWSDAVTGYNNGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFL 98
Query: 212 GVYFSSAIASN 222
VY +S I N
Sbjct: 99 IVYIASGIIGN 109
>gi|419012186|ref|ZP_13559551.1| rhomboid family protein [Escherichia coli DEC1D]
gi|377862951|gb|EHU27758.1| rhomboid family protein [Escherichia coli DEC1D]
Length = 625
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|375090618|ref|ZP_09736932.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
gi|374565379|gb|EHR36650.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
Length = 228
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ------DKLLLWGAKINS-LIDKGQFWRLATSAFLHANIAH 186
T L+A+NVLV+I T + L+ GAK N ++ +G+++RL T+AF+H H
Sbjct: 13 TYFLVAINVLVFIYMLMTFKTTTSFEALIETGAKSNPHIVYQGEWYRLVTAAFIHIGFEH 72
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L+ N S+ IG +E++ G R G++ ++I N
Sbjct: 73 LLFNNLSIYFIGQDLERLMGHLRLFGLFMIASIGGN 108
>gi|256850860|ref|ZP_05556249.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260661071|ref|ZP_05861985.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
gi|256615922|gb|EEU21110.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260548008|gb|EEX23984.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
Length = 215
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 10/90 (11%)
Query: 143 LVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH + HL+VNC
Sbjct: 7 VVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCV 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +G +E + G R+L +Y + + N
Sbjct: 67 TLFYMGQYLEPMLGHVRFLIIYLLAGVGGN 96
>gi|383113335|ref|ZP_09934107.1| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
gi|382948721|gb|EFS32339.2| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
Length = 592
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E++ G RR Y + + S
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCS 259
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 109 RKNSGHEGTSHLDTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQDK------- 154
++ G G + AR G R +T IL+A+N+ V++ A D+
Sbjct: 96 QRGGGGTGRAPRGDARPRTLAGGVVQGDPRLFTKILIALNLAVFLLVQAVPDQQRLLDDL 155
Query: 155 ------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L +GA + +G+++RL T+AFLH I H+ VN SL +GP +E + G
Sbjct: 156 EMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRA 215
Query: 209 RYLGVYFSSAIASN 222
R+L +Y +A+ +
Sbjct: 216 RFLALYLIAAVGGS 229
>gi|169627133|ref|YP_001700782.1| rhomboid family protein [Mycobacterium abscessus ATCC 19977]
gi|169239100|emb|CAM60128.1| Rhomboid family protein [Mycobacterium abscessus]
Length = 287
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 167
>gi|420912660|ref|ZP_15375972.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|420919114|ref|ZP_15382417.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|420924284|ref|ZP_15387580.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|420929944|ref|ZP_15393223.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|420969638|ref|ZP_15432841.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
gi|420980281|ref|ZP_15443458.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|420985667|ref|ZP_15448834.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|421009768|ref|ZP_15472877.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|421010496|ref|ZP_15473600.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|421020930|ref|ZP_15483986.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|421025708|ref|ZP_15488751.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|421031230|ref|ZP_15494260.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392112005|gb|EIU37775.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|392114654|gb|EIU40423.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|392126932|gb|EIU52683.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|392128937|gb|EIU54687.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|392164559|gb|EIU90248.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|392170663|gb|EIU96341.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|392195374|gb|EIV20993.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|392206653|gb|EIV32236.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|392209231|gb|EIV34803.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|392216607|gb|EIV42150.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|392219112|gb|EIV44637.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392245294|gb|EIV70772.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
Length = 247
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ VN SL IGP +E+ G +RY +Y ++ + S+ +
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAA 127
>gi|152999493|ref|YP_001365174.1| rhomboid family protein [Shewanella baltica OS185]
gi|151364111|gb|ABS07111.1| Rhomboid family protein [Shewanella baltica OS185]
Length = 547
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N Y L +G +E + G R Y + + ++
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLAS 426
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 137 LLAVNV----LVYIAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNV L+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVFILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y+L +G +E + G ++L YF S I N
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGN 101
>gi|326383928|ref|ZP_08205612.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197387|gb|EGD54577.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 248
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 134 TNILLAVNVLVYIA---------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L+ +N+L ++A + ++ G I L + ++WRL TS FLH ++
Sbjct: 29 TYALIGINLLAFVAVVLQAGGVASLLQRSTIMQQGTLITGLGFQDEYWRLLTSGFLHWSV 88
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
H+ +N SL IG +E++ GP RYL VY
Sbjct: 89 VHIAMNMISLYLIGADLERVLGPVRYLAVYL 119
>gi|299149420|ref|ZP_07042477.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
gi|298512607|gb|EFI36499.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
Length = 592
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E++ G RR Y + + S
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCS 259
>gi|423298194|ref|ZP_17276253.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
gi|392663610|gb|EIY57158.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
Length = 592
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E++ G RR Y + + S
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCS 259
>gi|417139548|ref|ZP_11982970.1| peptidase, S54 family [Escherichia coli 97.0259]
gi|417307136|ref|ZP_12094013.1| hypothetical protein PPECC33_5850 [Escherichia coli PCN033]
gi|338771313|gb|EGP26056.1| hypothetical protein PPECC33_5850 [Escherichia coli PCN033]
gi|386157276|gb|EIH13618.1| peptidase, S54 family [Escherichia coli 97.0259]
Length = 625
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSFPHLLINMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L V+ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGV 109
>gi|336417117|ref|ZP_08597446.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
gi|335936742|gb|EGM98660.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
Length = 592
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E++ G RR Y + + S
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCS 259
>gi|319937466|ref|ZP_08011871.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
gi|319807306|gb|EFW03915.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
Length = 213
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 23/105 (21%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG---------------QFWRLATSA 178
T++L+A+ V++Y+ F LL+G ++N + +G +++RL T+
Sbjct: 15 TSVLIALCVVIYVISF------LLYGEEMN--VYEGMAFGGYNPVFVQLNHEYYRLITAN 66
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
F+H I H+ VNCYSL IG +E P++Y V F SA+A+
Sbjct: 67 FIHFGIIHIAVNCYSLYGIGMFIESSLKPKKYCIVLFISALATTG 111
>gi|126175582|ref|YP_001051731.1| rhomboid family protein [Shewanella baltica OS155]
gi|386342329|ref|YP_006038695.1| rhomboid family protein [Shewanella baltica OS117]
gi|125998787|gb|ABN62862.1| Rhomboid family protein [Shewanella baltica OS155]
gi|334864730|gb|AEH15201.1| Rhomboid family protein [Shewanella baltica OS117]
Length = 541
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINFQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N Y L +G +E + G R Y + + ++
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLAS 426
>gi|297205734|ref|ZP_06923129.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
gi|297148860|gb|EFH29158.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
Length = 229
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 10/90 (11%)
Query: 143 LVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH + HL+VNC
Sbjct: 21 VVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCV 80
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +G +E + G R+L +Y + + N
Sbjct: 81 TLFYMGQYLEPMLGHVRFLIIYLLAGVGGN 110
>gi|387929721|ref|ZP_10132398.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
gi|387586539|gb|EIJ78863.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
Length = 518
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T FLH + HL++N SL +G +E++ G R+L +Y
Sbjct: 211 LIRFGAKFNLLIIEGEWWRFFTPIFLHVGLLHLLMNTLSLYYLGTVVERLYGNVRFLLIY 270
Query: 215 FSSAIASN 222
+ A +
Sbjct: 271 LFAGFAGS 278
>gi|160886529|ref|ZP_02067532.1| hypothetical protein BACOVA_04540 [Bacteroides ovatus ATCC 8483]
gi|423289697|ref|ZP_17268547.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
gi|156108414|gb|EDO10159.1| peptidase, S54 family [Bacteroides ovatus ATCC 8483]
gi|392667408|gb|EIY60918.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
Length = 592
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E++ G RR Y + + S
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCS 259
>gi|365904247|ref|ZP_09442006.1| membrane-associated serine protease [Lactobacillus versmoldensis
KCTC 3814]
Length = 223
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+GAKIN L+ G +WRL T FLH + H++ N +L +G +E + G R+L ++ S
Sbjct: 40 FGAKINYLVQDGDWWRLFTPIFLHIGVLHILTNGVTLYFVGTILEPLIGHVRFLVIFLLS 99
Query: 218 AIASN 222
I N
Sbjct: 100 GITGN 104
>gi|312870529|ref|ZP_07730647.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
gi|311093926|gb|EFQ52252.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
Length = 215
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V++Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVTLVAIQVIIYLLMTLAGGSTNPAVLLRFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L IG +E++ G R L +Y SA+ N
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLIIYLGSAVVGN 101
>gi|293373190|ref|ZP_06619552.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|292631838|gb|EFF50454.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
Length = 584
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E++ G RR Y + + S
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCS 251
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASN 222
L VY +S I N
Sbjct: 98 LVVYIASGIIGN 109
>gi|373953754|ref|ZP_09613714.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
gi|373890354|gb|EHQ26251.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
Length = 554
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL WG + + + +GQ+WRL T+ FLH + H+++N Y L +G +E + G +RY Y
Sbjct: 444 LLKWGGNLRTNVIQGQYWRLLTNIFLHGGLMHVLMNMYGLLFVGIFLEPLMGVKRYTLAY 503
Query: 215 FSSAIASN 222
+ I ++
Sbjct: 504 IGTGILAS 511
>gi|311071132|ref|YP_003976055.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|419823027|ref|ZP_14346590.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
gi|310871649|gb|ADP35124.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|388472834|gb|EIM09594.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
Length = 199
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++I ++LWG + N + G++WRL T FLHA AHL+ N S
Sbjct: 21 ILAIQSVLWIFCKLPIHSVILWGDAVTGYNLGVANGEWWRLITPIFLHAGFAHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ P +E++ G R+L VY S I N
Sbjct: 81 IFLFAPALERLLGKARFLLVYVGSGIIGN 109
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 155 LLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+++W + N + +G++WRL T FLHAN HL+ N SL P +E++ G R+L
Sbjct: 39 VMMWSDAVTGYNYGVAEGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFL 98
Query: 212 GVYFSSAIASN 222
VY +S I N
Sbjct: 99 IVYIASGIIGN 109
>gi|67925260|ref|ZP_00518623.1| Rhomboid-like protein [Crocosphaera watsonii WH 8501]
gi|67852903|gb|EAM48299.1| Rhomboid-like protein [Crocosphaera watsonii WH 8501]
Length = 193
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N LV++ Q + L GA + ++ +GQFWRL TS FLH H
Sbjct: 2 TLFLIILNGLVFVTQLRLGGSENIETLYELGALVPVVVWEGQFWRLITSNFLHYGWGHFS 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N +L IG +EKI Y+ +YF S I S
Sbjct: 62 MNMLALYFIGNLVEKISNKYNYITIYFLSGIGS 94
>gi|237723366|ref|ZP_04553847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229447888|gb|EEO53679.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 584
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E++ G RR Y + + S
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCS 251
>gi|440784052|ref|ZP_20961473.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
gi|440219088|gb|ELP58303.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
Length = 325
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------LWGAKINSLIDKGQFWRLATSAFLHANIA 185
T I++ +N+ VY+ L + GAK N LI+ G+++RL T FLH+ I
Sbjct: 141 TYIIIGINIAVYLLSGVLSRNLFNIDINVLDILGAKDNYLINNGEYYRLFTCMFLHSGIL 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRY 210
H+ N Y+L SIG E I G ++Y
Sbjct: 201 HIASNMYALYSIGGLAESIYGRKKY 225
>gi|255690223|ref|ZP_05413898.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
gi|260624242|gb|EEX47113.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
Length = 584
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLH 181
G T IL+ +N+LV+I A+ + LL WGA L G +WR T F+H
Sbjct: 152 GFMATPILIDLNILVFIVMIASGVEIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIH 211
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
HL++N Y+ +G +E + G RR Y + + S
Sbjct: 212 IGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCS 251
>gi|218190628|gb|EEC73055.1| hypothetical protein OsI_07010 [Oryza sativa Indica Group]
Length = 483
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
TN+L A+N+ V + + A+ + L++GAKIN LI G++WRL T LH+
Sbjct: 252 TNLLAAINIAVMLFEIASPVRNSDIENLSLPLMYGAKINDLILSGEWWRLLTPMCLHSGF 311
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ + C+ L GP + + G +L +Y + N
Sbjct: 312 LHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGN 349
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ LI GQ++R+ T+ F+H HL N Y+L IG E I G R++ YF
Sbjct: 38 LLFGAQYGPLIKSGQWYRIITAMFMHGGFLHLAFNMYALYIIGNYAEGIYGTYRFITYYF 97
Query: 216 SSAIASN 222
+ I N
Sbjct: 98 ITGIVGN 104
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+A+NV++++ Q + Q L+L + + G ++RL TSAFLH IAHL+ N
Sbjct: 77 TYTLIAINVVMFVLQTVSPNLQSDLVLRSPSVAT----GDWYRLVTSAFLHYGIAHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Y+L +GP++E G R+ +Y SA+ +
Sbjct: 133 MYALYIMGPSLESWLGRLRFSALYAMSALGGS 164
>gi|359460821|ref|ZP_09249384.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 537
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R+L Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIQHLSLNMFGLALLGPFVEKMLGTWRFLVSYLMTA 426
Query: 219 IAS 221
I S
Sbjct: 427 IGS 429
>gi|323340676|ref|ZP_08080928.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335996819|ref|ZP_08562736.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|417974323|ref|ZP_12615144.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
gi|323091799|gb|EFZ34419.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335351889|gb|EGM53380.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|346329320|gb|EGX97618.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
Length = 219
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPGVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+N +L IG ++E I G R+ +Y S I + +
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAA 106
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 199
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 155 LLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+L
Sbjct: 39 VMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFL 98
Query: 212 GVYFSSAIASN 222
VY +S I N
Sbjct: 99 IVYIASGIIGN 109
>gi|432859392|ref|ZP_20085463.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE146]
gi|431408031|gb|ELG91228.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE146]
Length = 625
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLINMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L V+ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGV 109
>gi|18977600|ref|NP_578957.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|397651726|ref|YP_006492307.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
gi|18893319|gb|AAL81352.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|393189317|gb|AFN04015.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
Length = 193
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T+IL + V+ ++ + DK ++ A+IN + G+FWR+ T+ F+H H +N +
Sbjct: 11 TSILAFMIVVGFVYEIVVGFDKAIMQFAQINLYVYLGEFWRVITAIFIHMGYIHFALNLF 70
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L +G +E + G R+++ V+FS A+ N
Sbjct: 71 WLIYLGMDLEGLLGSRKFIIVFFSGAVIGN 100
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 136 ILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+L+ +NV++++ FA + L +GA LI +G+ WRL FLH + HL+ N
Sbjct: 37 VLIGINVVMFLLTAFAGGSTDPEVLTAFGACNRKLIAQGELWRLVVPMFLHIGVIHLVAN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
Y+L +GP +E + G R+ +Y S I
Sbjct: 97 MYALWVVGPQLESLYGSARFTILYVLSGIGG 127
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 115 EGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSL 165
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 51 EGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS- 108
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ +
Sbjct: 109 ---GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGS 162
>gi|331676317|ref|ZP_08377029.1| outer membrane protein [Escherichia coli H591]
gi|417600998|ref|ZP_12251581.1| rhomboid family protein [Escherichia coli STEC_94C]
gi|331076375|gb|EGI47657.1| outer membrane protein [Escherichia coli H591]
gi|345353483|gb|EGW85716.1| rhomboid family protein [Escherichia coli STEC_94C]
Length = 265
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 115 EGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSL 165
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 16 EGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS- 73
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ +
Sbjct: 74 ---GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGS 127
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 115 EGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSL 165
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 16 EGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS- 73
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ +
Sbjct: 74 ---GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGS 127
>gi|453362588|dbj|GAC81512.1| hypothetical protein GM1_036_00120 [Gordonia malaquae NBRC 108250]
Length = 234
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLW-------GAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ A L+ G I+ Q+WRL TS FLH ++ H
Sbjct: 18 TYTLIAINVVVFAAVLLQAGGTTLFYSSIYREGVLISGAGFDDQYWRLLTSGFLHQSVPH 77
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L +N +SL IG +E+ G RYL +Y S + + +
Sbjct: 78 LAINMFSLYIIGADLERALGRGRYLAIYLVSLLGGSAA 115
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 115 EGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSL 165
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 14 EGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS- 71
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ +
Sbjct: 72 ---GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGS 125
>gi|432769512|ref|ZP_20003867.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE50]
gi|432960155|ref|ZP_20150361.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE202]
gi|433061907|ref|ZP_20248866.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE125]
gi|431318193|gb|ELG05960.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE50]
gi|431478264|gb|ELH58013.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE202]
gi|431587577|gb|ELI58950.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE125]
Length = 460
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L V+ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGV 109
>gi|358462907|ref|ZP_09173011.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
gi|357071027|gb|EHI80658.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
Length = 400
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 16/102 (15%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T IL+ + ++ Y+ Q T D L+ G KI +L D ++WRL T+AFLH
Sbjct: 188 TKILIGLCLVAYVLQGVPGLTGTSRINQFTIDYSLI-GVKI-ALDD--EYWRLVTAAFLH 243
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
++ H++ N Y+L +G +E + G RYL ++F+ AI N
Sbjct: 244 GSVLHILFNMYALFLLGTQLEAVLGRARYLALFFACAIGGNT 285
>gi|347525683|ref|YP_004832431.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
gi|345284642|gb|AEN78495.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
Length = 219
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPSVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L IG ++E I G R+ +Y S I +
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGD 104
>gi|218549768|ref|YP_002383559.1| hypothetical protein EFER_2447 [Escherichia fergusonii ATCC 35469]
gi|218357309|emb|CAQ89944.1| conserved hypothetical protein; putative membrane protein
[Escherichia fergusonii ATCC 35469]
Length = 645
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 43 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 102
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 103 ALLVVGTVAERILGKWRLLIIWLFSGI 129
>gi|365832927|ref|ZP_09374453.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
gi|365259760|gb|EHM89743.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
Length = 214
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A+
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATT 106
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GAK LI +GQ+WRL T+ FLH I HL++N +L +G +E + G R L +Y S
Sbjct: 41 GAKDTPLILQGQWWRLLTAGFLHIGIQHLVINMLTLYFLGMYVETLFGHWRMLVIYLVSV 100
Query: 219 IASN 222
++ N
Sbjct: 101 VSGN 104
>gi|440748391|ref|ZP_20927644.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436483215|gb|ELP39283.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 517
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ILL N+L+++ + +LL WGA S G +WRL +S FLH I
Sbjct: 319 TSILLDFNILIFLLMTFSGVHIISPNGIELLEWGANRRSETTGGDWWRLVSSMFLHGGIM 378
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N Y L +E + G +Y +YF+S I +
Sbjct: 379 HLFLNIYGLVIAALFVEPVFGRIKYFILYFASGICGS 415
>gi|333445938|ref|ZP_08480880.1| membrane-associated serine protease [Leuconostoc inhae KCTC 3774]
Length = 174
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q+WRL T FLHA + H++ N +L IGP E+ G R++LG+Y I N
Sbjct: 4 QYWRLVTPLFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGN 56
>gi|239629073|ref|ZP_04672104.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519219|gb|EEQ59085.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 206
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 131 RQWTNI-LLAVNVLVYIAQFATQDK-----LLLWGAKINSLID-KGQFWRLATSAFLHAN 183
+ + NI L+AVNVL+++ D +++ GA L+ +G+++RL TS FLH
Sbjct: 9 KAYVNIALIAVNVLIFLYFELIGDTEDTMFMIMHGAVYEPLVVLRGEYYRLFTSMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+HL+ N L +G ME++ G +YL Y S IA+N
Sbjct: 69 ASHLVNNMLVLFVLGERMEQVLGHVKYLIFYIVSGIAAN 107
>gi|237732716|ref|ZP_04563197.1| predicted protein [Mollicutes bacterium D7]
gi|229384211|gb|EEO34302.1| predicted protein [Coprobacillus sp. D7]
Length = 209
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A+
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATT 106
>gi|167756710|ref|ZP_02428837.1| hypothetical protein CLORAM_02248 [Clostridium ramosum DSM 1402]
gi|374627722|ref|ZP_09700124.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
gi|167702885|gb|EDS17464.1| peptidase, S54 family [Clostridium ramosum DSM 1402]
gi|373912961|gb|EHQ44804.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
Length = 214
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A+
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATT 106
>gi|422330928|ref|ZP_16411945.1| 40-residue YVTN family beta-propeller [Escherichia coli 4_1_47FAA]
gi|373248177|gb|EHP67609.1| 40-residue YVTN family beta-propeller [Escherichia coli 4_1_47FAA]
Length = 467
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L V+ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGV 109
>gi|424817145|ref|ZP_18242296.1| hypothetical protein ECD227_2262 [Escherichia fergusonii ECD227]
gi|325498165|gb|EGC96024.1| hypothetical protein ECD227_2262 [Escherichia fergusonii ECD227]
Length = 625
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|158337464|ref|YP_001518639.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158307705|gb|ABW29322.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 537
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R++ Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIEHLSLNMFGLGLLGPFVEKMLGTWRFIVSYLMTA 426
Query: 219 IAS 221
I S
Sbjct: 427 IGS 429
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TYALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +E G R+ +Y SA+ +
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGS 166
>gi|260665468|ref|ZP_05866315.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
gi|260560736|gb|EEX26713.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
Length = 215
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 32 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 91
Query: 218 AIASN 222
+ N
Sbjct: 92 GVGGN 96
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ---DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+Y+ Q A+ + +LW + + G+++RL TSAFLH + HL+ N
Sbjct: 77 TYTLIAVNVLMYVLQRASTGFTEAFVLWAPAVAA----GEYYRLVTSAFLHFGLMHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L IG +E G R+ +Y SA+ +
Sbjct: 133 MFALYVIGGPLEAALGRLRFGLLYALSALGGS 164
>gi|424919232|ref|ZP_18342596.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392855408|gb|EJB07929.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T LLAV V VY + A + L+L G S+++ ++WRL T+ F+H
Sbjct: 206 TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVEGAEWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I HL NC+ L G E++ G R + ++F+SA+ +
Sbjct: 266 GGIVHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGS 306
>gi|418048760|ref|ZP_12686847.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
gi|353189665|gb|EHB55175.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
Length = 248
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 137 LLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
L+AVNV++++ Q +++ +L+LW + G+++RL TSAF+H HL+ N ++
Sbjct: 43 LIAVNVVMFVLQMTSKNLERELVLWAPGVAG----GEYYRLVTSAFMHYGALHLLFNMWA 98
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L IGP +E G R+ +Y SA+ +
Sbjct: 99 LYVIGPPLESWLGRLRFGALYALSALGGS 127
>gi|331672189|ref|ZP_08372981.1| outer membrane protein [Escherichia coli TA280]
gi|331070656|gb|EGI42019.1| outer membrane protein [Escherichia coli TA280]
Length = 625
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVTSLTLSGESWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|389852799|ref|YP_006355033.1| Peptidase, putative, Rhomboid-like protein [Pyrococcus sp. ST04]
gi|388250105|gb|AFK22958.1| putative Peptidase, putative, Rhomboid-like protein [Pyrococcus sp.
ST04]
Length = 196
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSL 194
I+ AV V I F DK +L A+IN L+ G++WRL T+ F+H H +N + L
Sbjct: 17 IITAVFVYEVIVGF---DKAILQLAQINGLVLLNGEWWRLITAIFVHMGFVHFALNSFWL 73
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +E I G +R+L V+F SA+ N
Sbjct: 74 FYLGIDLEGIIGMKRFLIVFFLSALVGN 101
>gi|297582849|ref|YP_003698629.1| rhomboid family protein [Bacillus selenitireducens MLS10]
gi|297141306|gb|ADH98063.1| Rhomboid family protein [Bacillus selenitireducens MLS10]
Length = 255
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+I L + VY F +++ G N I G++WRL T FLH + H+M N ++
Sbjct: 22 ISICLFFYIWVYWFGFLGGNEIFALGVGWNFAIAMGEYWRLVTPIFLHGGLMHVMFNSFA 81
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L GP +E G R++ ++ +A+ +N
Sbjct: 82 LFLFGPWLEAKLGISRFVMLFLGTAVIAN 110
>gi|241205206|ref|YP_002976302.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859096|gb|ACS56763.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I HL NC SL G E++ G R + ++F+SA+ +
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGS 306
>gi|442598952|ref|ZP_21016692.1| Putative membrane protein [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|441652328|emb|CCQ02189.1| Putative membrane protein [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
Length = 138
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGV 109
>gi|442323116|ref|YP_007363137.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
gi|441490758|gb|AGC47453.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
Length = 518
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCY 192
+L+ ++ L++ D L+ WGAK L+ + GQ WRL T+ LH ++ HL++N
Sbjct: 10 AGVLVGLHGLLWSQGPVDVDALVRWGAKAGPLVLEAGQVWRLLTANLLHRDVLHLLLNVT 69
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L + G +E++C YL + A+ + S
Sbjct: 70 VLVAAGSALERVCRRSDYLAFLVTVALTTMAS 101
>gi|238854484|ref|ZP_04644823.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313471846|ref|ZP_07812338.1| rhomboid family protein [Lactobacillus jensenii 1153]
gi|238832911|gb|EEQ25209.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313449012|gb|EEQ68240.2| rhomboid family protein [Lactobacillus jensenii 1153]
Length = 229
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 46 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 105
Query: 218 AIASN 222
+ N
Sbjct: 106 GVGGN 110
>gi|149919219|ref|ZP_01907702.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149819933|gb|EDM79355.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 383
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 136 ILLAVNVLVYIAQFA--------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL +NV V++ + ++L+ WGA GQ+WRL T+ FLH + HL
Sbjct: 55 VLLGLNVAVWLLMVGMGVDAFEPSSEELVDWGANFGPKTASGQWWRLLTATFLHGGLIHL 114
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
N Y L IG E+I YL +YF S + ++ +
Sbjct: 115 GFNIYFLWVIGRITEQIFRAPAYLVIYFGSGLCASAA 151
>gi|410460563|ref|ZP_11314238.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
gi|409926821|gb|EKN63973.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
Length = 507
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+++++ + L+ +GAK N I +G +WR T FLH HL
Sbjct: 178 TYVLVVINLIMFLLLELVGSGSTDLSTLIKFGAKYNPAILEGDWWRFITPMFLHIGFLHL 237
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
++N +L +G ++E+I G R+L +YF++ I
Sbjct: 238 LMNTLALYYLGISVERIYGTWRFLILYFAAGI 269
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 125 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 184
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ +
Sbjct: 185 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGS 229
>gi|417886300|ref|ZP_12530447.1| peptidase, S54 family [Lactobacillus oris F0423]
gi|341593798|gb|EGS36623.1| peptidase, S54 family [Lactobacillus oris F0423]
Length = 215
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V +Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVALIAIQVTIYLLMTLAGGSTNPAVLLQFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N +L IG +E++ G R L +Y SA+ N
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLVIYLGSAVVGN 101
>gi|300931592|ref|ZP_07146904.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
gi|300460616|gb|EFK24109.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
Length = 283
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGV 109
>gi|190892260|ref|YP_001978802.1| hypothetical protein RHECIAT_CH0002672 [Rhizobium etli CIAT 652]
gi|190697539|gb|ACE91624.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ +
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLVAGMLFERLIGWRWFAAIFFASALGGS 306
>gi|116252699|ref|YP_768537.1| transmembrane rhomboid family protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257347|emb|CAK08442.1| putative transmembrane rhomboid family protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I HL NC SL G E++ G R + ++F+SA+ +
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGS 306
>gi|432977333|ref|ZP_20166158.1| hypothetical protein A15S_03237 [Escherichia coli KTE209]
gi|433086282|ref|ZP_20272679.1| hypothetical protein WIY_00721 [Escherichia coli KTE137]
gi|431482437|gb|ELH62140.1| hypothetical protein A15S_03237 [Escherichia coli KTE209]
gi|431609318|gb|ELI78643.1| hypothetical protein WIY_00721 [Escherichia coli KTE137]
Length = 348
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 32 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 91
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ +
Sbjct: 92 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGS 136
>gi|417099012|ref|ZP_11959759.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
gi|327192676|gb|EGE59614.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
Length = 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ +
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGS 306
>gi|452974258|gb|EME74079.1| transmembrane protein YdcA [Bacillus sonorensis L12]
Length = 199
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I +G++WRL T F+HA +HL+ N SL P +E++ G R+L VY S + N
Sbjct: 53 IAEGEWWRLVTPVFIHAGFSHLLFNSMSLFLFAPALERMMGKLRFLAVYIGSGVIGN 109
>gi|377831625|ref|ZP_09814595.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
gi|377554419|gb|EHT16128.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
Length = 220
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GA+ LI G++WRL T F+H + HL+VN +L IG +E + G R+L +Y
Sbjct: 37 LIEFGARYTPLIKAGEWWRLITPGFVHIGLTHLVVNSVTLYFIGMYIENLFGHWRFLAIY 96
Query: 215 FSSAIASN 222
S + N
Sbjct: 97 LVSTLMGN 104
>gi|148544432|ref|YP_001271802.1| rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|184153796|ref|YP_001842137.1| hypothetical protein LAR_1141 [Lactobacillus reuteri JCM 1112]
gi|227363140|ref|ZP_03847275.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|325682754|ref|ZP_08162270.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
gi|148531466|gb|ABQ83465.1| Rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|183225140|dbj|BAG25657.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071858|gb|EEI10146.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|324977104|gb|EGC14055.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
Length = 219
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASN 222
+ G R + +YF SA+ N
Sbjct: 86 EFFGHWRMVVIYFVSALFGN 105
>gi|432601198|ref|ZP_19837451.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
gi|431143593|gb|ELE45316.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
Length = 625
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEAVDQSALIHLGANVTSLTLSGESWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 115 EGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSL 165
EG + RT F GRQ T L+ +N LV++ Q + +L LW + S
Sbjct: 16 EGARAVRQPRTP-FGGRQRSATPVVTYTLILLNALVFVMQVTVMGLERQLALWPPAVAS- 73
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ +
Sbjct: 74 ---GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGS 127
>gi|384049179|ref|YP_005497196.1| hypothetical protein BMWSH_5009 [Bacillus megaterium WSH-002]
gi|345446870|gb|AEN91887.1| Conserved membrane protein YdcA [Bacillus megaterium WSH-002]
Length = 200
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 N 222
N
Sbjct: 109 N 109
>gi|355683178|ref|ZP_09062854.1| hypothetical protein HMPREF9469_05891 [Clostridium citroniae
WAL-17108]
gi|354810660|gb|EHE95300.1| hypothetical protein HMPREF9469_05891 [Clostridium citroniae
WAL-17108]
Length = 206
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 131 RQWTNI-LLAVNVLVYIAQFA----TQDKLLLW--GAKINSLID-KGQFWRLATSAFLHA 182
+ + NI L+AVNV+V++ F T+D + + GA L+ +G+++RL TS FLH
Sbjct: 9 KAYVNIALIAVNVMVFLL-FELIGDTEDTMFMMKHGAVYEPLVVMRGEYYRLLTSMFLHF 67
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+HLM N L +G ME++ G +Y Y +S I +N
Sbjct: 68 GASHLMNNMLVLFVLGERMEQVLGHVKYFFFYMASGIFAN 107
>gi|336406188|ref|ZP_08586849.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
gi|335935437|gb|EGM97389.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
Length = 584
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E + G RR Y + + S
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCS 251
>gi|298480750|ref|ZP_06998946.1| S54 family peptidase [Bacteroides sp. D22]
gi|298273184|gb|EFI14749.1| S54 family peptidase [Bacteroides sp. D22]
Length = 584
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E + G RR Y + + S
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCS 251
>gi|295085069|emb|CBK66592.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Bacteroides xylanisolvens XB1A]
Length = 584
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 126 NLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
T F+H HL++N Y+ +G +E + G RR Y + + S
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCS 251
>gi|387606156|ref|YP_006095012.1| hypothetical protein EC042_0691 [Escherichia coli 042]
gi|284920456|emb|CBG33517.1| putative membrane protein [Escherichia coli 042]
Length = 625
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L V+ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGV 109
>gi|172038646|ref|YP_001805147.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|354554015|ref|ZP_08973320.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
gi|171700100|gb|ACB53081.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|353553694|gb|EHC23085.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
Length = 525
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 132 QWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
Q T L+ +N LV++A+ F T ++L GA + + KG+FWRL T+ FLH
Sbjct: 330 QITLCLIILNSLVFLAEIGFGGTENFKTLEQL---GALVPMFVWKGEFWRLITANFLHYG 386
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
H + N L IG +E + +Y+ VYF S + S
Sbjct: 387 WGHFLTNMLGLYIIGNLVESLSNKSKYIIVYFFSGVGS 424
>gi|422827860|ref|ZP_16876033.1| hypothetical protein ESNG_00538 [Escherichia coli B093]
gi|371616286|gb|EHO04652.1| hypothetical protein ESNG_00538 [Escherichia coli B093]
Length = 625
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|422866646|ref|ZP_16913264.1| peptidase, S54 family, partial [Enterococcus faecalis TX1467]
gi|329578206|gb|EGG59610.1| peptidase, S54 family [Enterococcus faecalis TX1467]
Length = 214
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 138 LAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNC 191
L ++++V++ T L+ WGA + L+ + ++WR FLH H+++N
Sbjct: 1 LGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFINPMFLHIGFMHIILNM 60
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L IG +E I G RYLG+Y S IA N
Sbjct: 61 VTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN 91
>gi|294497058|ref|YP_003560758.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
gi|294346995|gb|ADE67324.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
Length = 200
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 N 222
N
Sbjct: 109 N 109
>gi|421776991|ref|ZP_16213591.1| peptidase, S54 family protein [Escherichia coli AD30]
gi|408457883|gb|EKJ81674.1| peptidase, S54 family protein [Escherichia coli AD30]
Length = 265
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L ++ S +
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|374710297|ref|ZP_09714731.1| hypothetical protein SinuC_08740 [Sporolactobacillus inulinus CASD]
Length = 204
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 134 TNILLAVNVLVYIA-----------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T ILL +NVL+Y+ +FA G+ +++++ G +W+L T FLH
Sbjct: 18 TAILLGINVLLYLLFVLTGTWRLAPEFAFTIFNFAAGSN-DAILNGGAWWQLVTPIFLHI 76
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+H++ N +SL GP +E++ G RYL + S+ + +N
Sbjct: 77 TFSHILFNAFSLYIFGPALEQLIGRFRYLIAFLSTGVIAN 116
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 155 LLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+L
Sbjct: 39 VMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFL 98
Query: 212 GVYFSSAIASN 222
VY S I N
Sbjct: 99 IVYIVSGIIGN 109
>gi|377556210|ref|ZP_09785925.1| Rhomboid family protein [Lactobacillus gastricus PS3]
gi|376168633|gb|EHS87381.1| Rhomboid family protein [Lactobacillus gastricus PS3]
Length = 221
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++ + VLV+IA LL +GA+ L+ GQ+WRL TSAF+H I HL+
Sbjct: 11 TITIIVIRVLVFIAMELNGGSTNTVTLLNFGAEYTPLLVAGQWWRLITSAFVHIGIMHLL 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N L +G +E++ G + + +Y S I+ N
Sbjct: 71 LNSIVLYYMGNYIEQLFGHWKLILIYIISVISGN 104
>gi|330718407|ref|ZP_08313007.1| membrane-associated serine protease [Leuconostoc fallax KCTC 3537]
Length = 229
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDK--LLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T ILL +L+Y+ + TQ+ L+ GAK I + ++WRL T FLHA +
Sbjct: 17 TTILLFFTILIYLVEVVLSGANTQNGRFLVEMGAKWGPYIQYQHEYWRLLTPIFLHAGMM 76
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+++N +L IGP E+ G R+YL +Y + N
Sbjct: 77 HIIMNMITLWFIGPLAERYFGSRKYLLLYLFGGVMGN 113
>gi|331701529|ref|YP_004398488.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128872|gb|AEB73425.1| Peptidase S54, rhomboid domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 220
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ ++
Sbjct: 37 LVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVIF 96
Query: 215 FSSAIASN 222
F S I N
Sbjct: 97 FVSGIMGN 104
>gi|218511093|ref|ZP_03508971.1| hypothetical protein RetlB5_29129 [Rhizobium etli Brasil 5]
Length = 466
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 84 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 138
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ +
Sbjct: 139 GAEWWRLFTAPFMHGGIIHLASNCFCLLVAGMLFERLIGWRWFAAIFFASALGGS 193
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 137 LLAVNVLVYIAQ-----FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+L N +++ F+T+D LL +GA+ +D G ++RL T+ F+H I
Sbjct: 9 ILLFNAFIFVMMTFSGVFSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGIL 68
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N Y+L G +E I G ++L YF + I N
Sbjct: 69 HILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGN 105
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TFALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +E G R+ +Y SA+ +
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGS 166
>gi|432529994|ref|ZP_19767037.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE233]
gi|431057070|gb|ELD66548.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE233]
Length = 625
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L ++ S +
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|260222883|emb|CBA32895.1| hypothetical protein Csp_B16320 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIA--------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+ +NV+V++A A L WGA GQ+WRL ++ F+H +
Sbjct: 27 TAGLMVLNVMVFLAIALAGGGWWHAVNGVQLDWGANFAPATQDGQWWRLLSAMFIHFGVW 86
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL VN ++L IG +E + G R+ +Y + + N
Sbjct: 87 HLAVNMWALWDIGRLLETLLGRWRFAALYLGAGVCGN 123
>gi|406027090|ref|YP_006725922.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
gi|405125579|gb|AFS00340.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
Length = 220
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ ++
Sbjct: 37 LVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVIF 96
Query: 215 FSSAIASN 222
F S I N
Sbjct: 97 FVSGIMGN 104
>gi|416408492|ref|ZP_11688379.1| hypothetical protein CWATWH0003_5135a5, partial [Crocosphaera
watsonii WH 0003]
gi|357260746|gb|EHJ10106.1| hypothetical protein CWATWH0003_5135a5, partial [Crocosphaera
watsonii WH 0003]
Length = 192
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N LV++ Q + L GA + ++ +GQFWRL T+ FLH H
Sbjct: 2 TLFLIILNGLVFVTQLRLGGSENIETLYELGALVPVVVWEGQFWRLITANFLHYGWGHFS 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+N +L IG +EKI Y+ +YF S I S ++
Sbjct: 62 MNMLALYFIGNLVEKISNKYNYITIYFLSGIGSMSA 97
>gi|325297592|ref|YP_004257509.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324317145|gb|ADY35036.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 963
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 130 GRQWTNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T +L+ +NV ++I T L+ WGA L G +WR T F+H
Sbjct: 536 GNIATPLLIYINVALFIVMSICGVSLIEPTGISLMKWGADFGPLTLTGDWWRTVTCNFIH 595
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
I HL++N Y+L IG +E+I G R+ + Y + + S
Sbjct: 596 IGIIHLLMNMYALLYIGIFLEQIIGSRKLMTAYLLTGLFS 635
>gi|257065576|ref|YP_003151832.1| rhomboid family protein [Anaerococcus prevotii DSM 20548]
gi|256797456|gb|ACV28111.1| Rhomboid family protein [Anaerococcus prevotii DSM 20548]
Length = 225
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +N+ V+ T + ++ +GA + L +G++WR T+AF+H H++
Sbjct: 12 TTVLMIINIAVFAIMTLTGGSESIENIVRFGAMVKPLFYQGEWWRALTAAFIHIGFFHIL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y L +IGP E++ G +L +Y + + N
Sbjct: 72 FNMYFLYNIGPLFERLYGSINFLIIYILAGVLGN 105
>gi|300920527|ref|ZP_07136953.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|432532817|ref|ZP_19769815.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE234]
gi|300412466|gb|EFJ95776.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|431063700|gb|ELD72933.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE234]
Length = 625
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L ++ S +
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|300817823|ref|ZP_07098037.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|415876304|ref|ZP_11542772.1| outer membrane protein [Escherichia coli MS 79-10]
gi|432804745|ref|ZP_20038690.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE91]
gi|432933001|ref|ZP_20132855.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE184]
gi|433192613|ref|ZP_20376630.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE90]
gi|300529520|gb|EFK50582.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|342928791|gb|EGU97513.1| outer membrane protein [Escherichia coli MS 79-10]
gi|431357208|gb|ELG43881.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE91]
gi|431457034|gb|ELH37377.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE184]
gi|431720867|gb|ELJ84886.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE90]
Length = 625
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|209917918|ref|YP_002292002.1| hypothetical protein ECSE_0727 [Escherichia coli SE11]
gi|422355992|ref|ZP_16436695.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
gi|209911177|dbj|BAG76251.1| conserved hypothetical protein [Escherichia coli SE11]
gi|324016063|gb|EGB85282.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
Length = 625
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|262200065|ref|YP_003271273.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262083412|gb|ACY19380.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length = 303
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+ +N++V+ +A+ + L+ G+ + ++ +G++WRL T+ FLH ++ H
Sbjct: 80 TYALIVINLIVFGLCVAEAGITNPGNAALMSDGSLVKGIVGEGEYWRLLTAGFLHFSVMH 139
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ VN SL IG +E+ G RYL VY S + + +
Sbjct: 140 VAVNMISLYIIGRDLERALGTYRYLAVYLISLLGGSAA 177
>gi|432749102|ref|ZP_19983720.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE29]
gi|431300119|gb|ELF89682.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE29]
Length = 625
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G +E+I G R L V+ S +
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGV 109
>gi|300823026|ref|ZP_07103160.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|417224822|ref|ZP_12028113.1| peptidase, S54 family [Escherichia coli 96.154]
gi|417268148|ref|ZP_12055509.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|423708594|ref|ZP_17682972.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|432375777|ref|ZP_19618789.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|432833688|ref|ZP_20067234.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
gi|300524375|gb|EFK45444.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|385707931|gb|EIG44956.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|386199870|gb|EIH98861.1| peptidase, S54 family [Escherichia coli 96.154]
gi|386230506|gb|EII57861.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|430901150|gb|ELC23133.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|431388187|gb|ELG71925.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
Length = 625
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|262409313|ref|ZP_06085856.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644959|ref|ZP_06722693.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294805963|ref|ZP_06764830.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345509393|ref|ZP_08788992.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|229446228|gb|EEO52019.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|262352765|gb|EEZ01862.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639680|gb|EFF57964.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294446845|gb|EFG15445.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 584
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 152 GFMATPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIH 211
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
HL++N Y+ +G +E + G RR Y + + S
Sbjct: 212 IGAFHLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCS 251
>gi|384250516|gb|EIE23995.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 306
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 136 ILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+LLA+N+ VY A A QD L AK + ++ G+++RL T+ FLH +
Sbjct: 59 LLLAINLGVYGAGLVAGLGPEGADAQQDYFLAL-AKTDVGVEAGEYYRLITANFLHDSFV 117
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +CY+L ++ P +E++ G +L Y S++ +
Sbjct: 118 HLGSSCYALATVAPAIEEVLGWDIFLATYLLSSVGGS 154
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 155 LLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+L
Sbjct: 39 VMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFL 98
Query: 212 GVYFSSAIASN 222
VY +S + N
Sbjct: 99 IVYIASGLIGN 109
>gi|433444473|ref|ZP_20409345.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
gi|432001501|gb|ELK22376.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
Length = 517
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH HL +N ++L +G +EK+ G R+L +Y
Sbjct: 217 LIQYGAKFNPLILQGEWWRFFTPIVLHIGFLHLFMNTFALYYLGSLVEKLYGSFRFLFIY 276
Query: 215 FSSAIAS 221
+ A
Sbjct: 277 LFAGFAG 283
>gi|310641361|ref|YP_003946119.1| rhomboid family protein [Paenibacillus polymyxa SC2]
gi|386040403|ref|YP_005959357.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
gi|309246311|gb|ADO55878.1| Rhomboid family protein [Paenibacillus polymyxa SC2]
gi|343096441|emb|CCC84650.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
Length = 207
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSENSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +++ P +E++ G RY+ +Y + + N
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGVVGN 112
>gi|400288453|ref|ZP_10790485.1| serine endopeptidase [Psychrobacter sp. PAMC 21119]
Length = 573
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ GQ+W++ TS F+HA I HL+++ L S+G +EK+ GP R++ +F I SN
Sbjct: 415 LQAGQYWQVVTSLFVHAGIIHLVMSLAMLFSVGYILEKVLGPARFMIAFFICGIFSN 471
>gi|432552623|ref|ZP_19789354.1| hypothetical protein A1S3_01005 [Escherichia coli KTE47]
gi|431086908|gb|ELD92924.1| hypothetical protein A1S3_01005 [Escherichia coli KTE47]
Length = 265
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|308068481|ref|YP_003870086.1| hypothetical protein PPE_01711 [Paenibacillus polymyxa E681]
gi|305857760|gb|ADM69548.1| Uncharacterized membrane protein [Paenibacillus polymyxa E681]
Length = 207
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q ++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSESSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +++ P +E++ G RY+ +Y + I N
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYVLLYLVTGIVGN 112
>gi|294630362|ref|ZP_06708922.1| membrane protein [Streptomyces sp. e14]
gi|292833695|gb|EFF92044.1| membrane protein [Streptomyces sp. e14]
Length = 282
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 131 RQWTNILLAVNVLVYIAQF----ATQDKLLLWG----AKINSL--IDKGQFWRLATSAFL 180
R T +L+ +N+ ++ Q A D+ L G + NS+ + +GQ++RL T+ FL
Sbjct: 69 RLVTKVLIGLNLAFFLVQLSVGDAFTDRFSLLGQAYVPQFNSVEGVAQGQWYRLITAMFL 128
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HAN H++ N SL IG +E G RYL +YF S +A +
Sbjct: 129 HANYFHILFNMLSLWWIGGPLEAALGRARYLALYFVSGLAGS 170
>gi|188495226|ref|ZP_03002496.1| peptidase, S54 (rhomboid) family [Escherichia coli 53638]
gi|188490425|gb|EDU65528.1| peptidase, S54 (rhomboid) family [Escherichia coli 53638]
Length = 625
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGV 109
>gi|432368609|ref|ZP_19611714.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE10]
gi|430889075|gb|ELC11746.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE10]
Length = 625
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGV 109
>gi|295702423|ref|YP_003595498.1| S54 (rhomboid) family peptidase [Bacillus megaterium DSM 319]
gi|294800082|gb|ADF37148.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium DSM
319]
Length = 200
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGFLG 108
Query: 222 N 222
N
Sbjct: 109 N 109
>gi|170020987|ref|YP_001725941.1| hypothetical protein EcolC_2989 [Escherichia coli ATCC 8739]
gi|169755915|gb|ACA78614.1| 40-residue YVTN family beta-propeller repeat protein [Escherichia
coli ATCC 8739]
Length = 625
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGV 109
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 116 GTSHL-DTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA---- 160
GT H D +R G R T IL+AVN+ V+IA ++Q + L L G+
Sbjct: 59 GTGHAPDASRPRTIAGGSIAADPRLVTKILVAVNLAVFIAVQSSQSLRNDLYLIGSWPPA 118
Query: 161 --KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+ + +G++WRL TS F H + H N SL +G +E G RYL +YF S
Sbjct: 119 PFQPTQGVAEGEWWRLVTSMFTHEAVWHFAFNMLSLWWLGGPLEAALGRARYLALYFCSG 178
Query: 219 IASN 222
+A +
Sbjct: 179 LAGS 182
>gi|432484363|ref|ZP_19726286.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE212]
gi|432669571|ref|ZP_19905116.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE119]
gi|433172497|ref|ZP_20357054.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE232]
gi|431018164|gb|ELD31601.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE212]
gi|431213304|gb|ELF11180.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE119]
gi|431695998|gb|ELJ61196.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE232]
Length = 625
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGV 109
>gi|284043226|ref|YP_003393566.1| rhomboid family protein [Conexibacter woesei DSM 14684]
gi|283947447|gb|ADB50191.1| Rhomboid family protein [Conexibacter woesei DSM 14684]
Length = 274
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 14/100 (14%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHA 182
T +L+A++VL Y+ + A+ ++ +LWG I + + WR+ TS FLHA
Sbjct: 62 TYVLIAISVLAYVGELASGGRINDAGGTLYENGVLWGPYIA---QRDEIWRMVTSGFLHA 118
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++ H++ N + + +G +E + G R++ +YF++ + +
Sbjct: 119 SLFHILFNMWFIWVLGRMLEPVLGHVRFVTLYFTALLCGS 158
>gi|295107387|emb|CBL04930.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---------------DKLLLWGAKINSLIDKGQFWRLA 175
R T +L+A+NV+V+ A+ A L+ GA L+ G+ +R
Sbjct: 56 RLVTIVLIALNVIVFAAEAAISLLAGARMGVSLDIPTRVLVDMGAMYAPLVQAGELFRFV 115
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
T FLH ++ HL N +L S+G +E++ G +L +YF I N
Sbjct: 116 TPMFLHMDLMHLGFNMVALFSVGEVLERVLGRGNFLALYFVGGITGN 162
>gi|251784156|ref|YP_002998460.1| ybl24 [Escherichia coli BL21(DE3)]
gi|253774360|ref|YP_003037191.1| 40-residue YVTN family beta-propeller repeat protein [Escherichia
coli 'BL21-Gold(DE3)pLysS AG']
gi|254160735|ref|YP_003043843.1| hypothetical protein ECB_00624 [Escherichia coli B str. REL606]
gi|254287523|ref|YP_003053271.1| hypothetical protein ECD_00624 [Escherichia coli BL21(DE3)]
gi|297516367|ref|ZP_06934753.1| hypothetical protein EcolOP_01939 [Escherichia coli OP50]
gi|422785262|ref|ZP_16838001.1| rhomboid family protein [Escherichia coli H489]
gi|242376429|emb|CAQ31131.1| ybl24 [Escherichia coli BL21(DE3)]
gi|253325404|gb|ACT30006.1| 40-residue YVTN family beta-propeller repeat protein [Escherichia
coli 'BL21-Gold(DE3)pLysS AG']
gi|253972636|gb|ACT38307.1| conserved hypothetical protein [Escherichia coli B str. REL606]
gi|253976830|gb|ACT42500.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
gi|323963224|gb|EGB58792.1| rhomboid family protein [Escherichia coli H489]
Length = 625
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGV 109
>gi|389576264|ref|ZP_10166292.1| putative membrane protein [Eubacterium cellulosolvens 6]
gi|389311749|gb|EIM56682.1| putative membrane protein [Eubacterium cellulosolvens 6]
Length = 215
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +N+L+++ + D + +GA L+ +G++WRL TS F+H + HL+
Sbjct: 20 TFALCVINILIFLIEELNGGSWDVDTAIRFGAMYRPLLMEGEWWRLFTSMFVHFGMDHLV 79
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
N SL IG ++E+ CG R+L +Y +A N
Sbjct: 80 SNTISLLLIGVSLEQHCGHIRFLLIYILGGLAGNG 114
>gi|29347217|ref|NP_810720.1| hypothetical protein BT_1807 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339116|gb|AAO76914.1| conserved protein, with rhomboid family domain [Bacteroides
thetaiotaomicron VPI-5482]
Length = 586
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIAS 221
+ + S
Sbjct: 249 TGLCS 253
>gi|383125162|ref|ZP_09945818.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
gi|251838549|gb|EES66635.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
Length = 586
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIAS 221
+ + S
Sbjct: 249 TGLCS 253
>gi|239825780|ref|YP_002948404.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239806073|gb|ACS23138.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 205
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 134 TNILLAVNVLVYIAQFA-TQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+IL+A++V+++ F LW I N+ + G++WRL + LH H+++N
Sbjct: 18 VSILVALHVVIWFTFFLRIPIAEPLWEKMIGFNAAVQNGEYWRLVSPLVLHVRFEHMIIN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL GP +EK+ G ++L +Y S I +N
Sbjct: 78 SISLILFGPALEKMLGKSKFLLLYIGSGICAN 109
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASN 222
I G ++L YF + I N
Sbjct: 86 DIYGTEKFLVGYFFTGIVGN 105
>gi|325663211|ref|ZP_08151661.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470665|gb|EGC73895.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 209
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S++++G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEEGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
M N + L IG +E G +YL VY S + N
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLAVYLLSGLMGN 104
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASN 222
I G ++L YF + I N
Sbjct: 86 DIYGTEKFLVGYFFTGIVGN 105
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WR T FLH+ AH++ N +SL GP +EK+ G ++ +Y +
Sbjct: 47 AGVNLYIAEGEYWRFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKFTLLYLAGGT 106
Query: 220 ASN 222
+N
Sbjct: 107 LAN 109
>gi|167763036|ref|ZP_02435163.1| hypothetical protein BACSTE_01401 [Bacteroides stercoris ATCC
43183]
gi|167699376|gb|EDS15955.1| peptidase, S54 family [Bacteroides stercoris ATCC 43183]
Length = 771
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 130 GRQWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T +L+ +N+ +++ T ++ WGA L G +WR T F+H
Sbjct: 349 GNMATPLLVYINIALFVVMSICGVSLLAPTGISIIKWGADFGPLTLTGDWWRTITCNFIH 408
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ H+++N Y+L IG +E++ G RR + YF + + S
Sbjct: 409 IGVIHVLMNMYALLYIGIFLEQLIGGRRLISAYFLTGLFS 448
>gi|167587242|ref|ZP_02379630.1| Rhomboid family protein [Burkholderia ubonensis Bu]
Length = 637
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 134 TNILLAVNVLVYI-----AQFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T +L VN ++++ A F + LL WGA GQ WRL TSAFLH H
Sbjct: 5 TILLAVVNAVIFLLMWRQASFDSLSNGLLLDWGANFAPYTLTGQPWRLLTSAFLHGGWQH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L++N Y L +G +E++ G R+ Y SA+ +
Sbjct: 65 LLLNLYMLVVLGTVLERVGGSTRFGVTYLLSALGGS 100
>gi|386725483|ref|YP_006191809.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
gi|384092608|gb|AFH64044.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
Length = 383
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L S+G +E+ G R+ Y + IA N
Sbjct: 259 FNLTALLSLGGRLERGIGSLRFALFYLLAGIAGN 292
>gi|419699532|ref|ZP_14227148.1| hypothetical protein OQA_03208 [Escherichia coli SCI-07]
gi|422382490|ref|ZP_16462650.1| peptidase, S54 family protein [Escherichia coli MS 57-2]
gi|432731340|ref|ZP_19966178.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE45]
gi|432758418|ref|ZP_19992922.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE46]
gi|324006274|gb|EGB75493.1| peptidase, S54 family protein [Escherichia coli MS 57-2]
gi|380349547|gb|EIA37819.1| hypothetical protein OQA_03208 [Escherichia coli SCI-07]
gi|431278248|gb|ELF69242.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE45]
gi|431311628|gb|ELF99786.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE46]
Length = 625
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E I G R L +YF S + N
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGN 253
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E I G R L +YF S + N
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGN 253
>gi|297801768|ref|XP_002868768.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297314604|gb|EFH45027.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 399
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI GQ+WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 182 LLYGAKINDLILAGQWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 241
Query: 216 SSAIASN 222
++ N
Sbjct: 242 LGGVSGN 248
>gi|227884370|ref|ZP_04002175.1| S54 (rhomboid) family peptidase [Escherichia coli 83972]
gi|300989984|ref|ZP_07179060.1| peptidase, S54 family protein [Escherichia coli MS 45-1]
gi|301049847|ref|ZP_07196786.1| peptidase, S54 family protein [Escherichia coli MS 185-1]
gi|386628203|ref|YP_006147923.1| hypothetical protein i02_0710 [Escherichia coli str. 'clone D i2']
gi|386633123|ref|YP_006152842.1| hypothetical protein i14_0710 [Escherichia coli str. 'clone D i14']
gi|386638028|ref|YP_006104826.1| intramembrane serine protease rhomboid family [Escherichia coli ABU
83972]
gi|422365214|ref|ZP_16445716.1| peptidase, S54 family protein [Escherichia coli MS 153-1]
gi|432410677|ref|ZP_19653360.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE39]
gi|432430725|ref|ZP_19673170.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE187]
gi|432435253|ref|ZP_19677654.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE188]
gi|432455538|ref|ZP_19697740.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE201]
gi|432494478|ref|ZP_19736296.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE214]
gi|432503317|ref|ZP_19745054.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE220]
gi|432522762|ref|ZP_19759901.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE230]
gi|432567448|ref|ZP_19803975.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE53]
gi|432591727|ref|ZP_19828056.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE60]
gi|432606493|ref|ZP_19842689.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE67]
gi|432650137|ref|ZP_19885899.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE87]
gi|432782516|ref|ZP_20016702.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE63]
gi|432842896|ref|ZP_20076317.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE141]
gi|432994404|ref|ZP_20183021.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE218]
gi|432998823|ref|ZP_20187363.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE223]
gi|433056969|ref|ZP_20244053.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE124]
gi|433114560|ref|ZP_20300376.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE153]
gi|433124177|ref|ZP_20309768.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE160]
gi|433138238|ref|ZP_20323525.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE167]
gi|433148066|ref|ZP_20333132.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE174]
gi|433206792|ref|ZP_20390491.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE97]
gi|433211538|ref|ZP_20395153.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE99]
gi|442606883|ref|ZP_21021678.1| Putative membrane protein [Escherichia coli Nissle 1917]
gi|227838456|gb|EEJ48922.1| S54 (rhomboid) family peptidase [Escherichia coli 83972]
gi|300298399|gb|EFJ54784.1| peptidase, S54 family protein [Escherichia coli MS 185-1]
gi|300407259|gb|EFJ90797.1| peptidase, S54 family protein [Escherichia coli MS 45-1]
gi|307552520|gb|ADN45295.1| intramembrane serine protease rhomboid family [Escherichia coli ABU
83972]
gi|315292079|gb|EFU51431.1| peptidase, S54 family protein [Escherichia coli MS 153-1]
gi|355419102|gb|AER83299.1| hypothetical protein i02_0710 [Escherichia coli str. 'clone D i2']
gi|355424022|gb|AER88218.1| hypothetical protein i14_0710 [Escherichia coli str. 'clone D i14']
gi|430938613|gb|ELC58854.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE39]
gi|430956347|gb|ELC75023.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE187]
gi|430966832|gb|ELC84195.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE188]
gi|430985410|gb|ELD02016.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE201]
gi|431027994|gb|ELD41039.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE214]
gi|431042319|gb|ELD52811.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE220]
gi|431054882|gb|ELD64451.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE230]
gi|431103281|gb|ELE07951.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE53]
gi|431133171|gb|ELE35169.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE60]
gi|431140715|gb|ELE42481.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE67]
gi|431193508|gb|ELE92844.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE87]
gi|431332228|gb|ELG19471.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE63]
gi|431397424|gb|ELG80880.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE141]
gi|431509738|gb|ELH87987.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE218]
gi|431514392|gb|ELH92234.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE223]
gi|431573956|gb|ELI46745.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE124]
gi|431637060|gb|ELJ05179.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE153]
gi|431650280|gb|ELJ17617.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE160]
gi|431665207|gb|ELJ31934.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE167]
gi|431676959|gb|ELJ43042.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE174]
gi|431732884|gb|ELJ96332.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE97]
gi|431736193|gb|ELJ99535.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE99]
gi|441712190|emb|CCQ07655.1| Putative membrane protein [Escherichia coli Nissle 1917]
Length = 625
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|227544150|ref|ZP_03974199.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|338202576|ref|YP_004648721.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
gi|154705524|gb|ABS84188.1| rhomboid family protein [Lactobacillus reuteri]
gi|227185866|gb|EEI65937.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|336447816|gb|AEI56431.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
Length = 219
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASN 222
+ G R + +YF SA N
Sbjct: 86 EFFGHWRMVIIYFVSAFFGN 105
>gi|432800897|ref|ZP_20034885.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE84]
gi|431351089|gb|ELG37887.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE84]
Length = 625
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|332880624|ref|ZP_08448298.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357046009|ref|ZP_09107639.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
gi|332681612|gb|EGJ54535.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355531015|gb|EHH00418.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
Length = 476
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL +N LV++A F LL WGA L G +WR+ T ++H +
Sbjct: 59 TPLLLDLNFLVFLAMCLSGVGIFFPDNVDLLHWGADFAPLTLTGDYWRVLTCNYVHVGLI 118
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HL +N Y+L IG +E + G RR Y S +
Sbjct: 119 HLAMNMYALLFIGLFLEPLAGSRRMAMAYVLSGL 152
>gi|418324201|ref|ZP_12935451.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
gi|365227449|gb|EHM68645.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
Length = 479
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+A+NV +++ F D KLL G ++ G+++RL TS FLH N HL++N
Sbjct: 162 LIAINVFIWLIMFLVLDRFSDFKLLDVGGLVHFNFVHGEWYRLITSMFLHFNFEHLLMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L +Y + + N
Sbjct: 222 LSLFIFGKIVESIVGHWRMLVIYLFAGLFGN 252
>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa]
gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 137 LLAVNVLVYI---------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L ++N+ V++ ++FA LL+GAKIN LI G++WRL T FLH+ H+
Sbjct: 253 LASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEWWRLVTPMFLHSGAFHV 312
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++ +SL + GP + + G + +Y I+ N
Sbjct: 313 VLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGN 347
>gi|312193973|ref|YP_004014034.1| rhomboid family protein [Frankia sp. EuI1c]
gi|311225309|gb|ADP78164.1| Rhomboid family protein [Frankia sp. EuI1c]
Length = 390
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
+ K ++WRL T+AFLH ++ H+ N Y+L +G +E I G RYL ++F+ AI N
Sbjct: 217 IAQKHEYWRLVTAAFLHGSVLHIAFNMYALFLLGTQLEAILGRVRYLALFFACAIGGNT 275
>gi|26246631|ref|NP_752671.1| hypothetical protein c0741 [Escherichia coli CFT073]
gi|26107030|gb|AAN79214.1|AE016757_118 Hypothetical protein c0741 [Escherichia coli CFT073]
Length = 625
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|153005609|ref|YP_001379934.1| rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
gi|152029182|gb|ABS26950.1| Rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
Length = 369
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
A + L+ GA S + G+ WRL T+ FLH HL +N +L GP +E+ GP R
Sbjct: 46 ADPELLVRLGALERSRVWAGEPWRLVTAGFLHGGWHHLAMNLGALLLAGPIVERGLGPAR 105
Query: 210 YLGVYFSSAIASNNS 224
+LG+Y +S + ++ +
Sbjct: 106 FLGLYLASVVGASAA 120
>gi|423216154|ref|ZP_17202679.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
gi|392691005|gb|EIY84256.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
Length = 584
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 152 GFMATPILIDLNLLVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIH 211
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
HL++N Y+ +G +E + G RR Y + + S
Sbjct: 212 IGAFHLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCS 251
>gi|337749843|ref|YP_004644005.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
gi|336301032|gb|AEI44135.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
Length = 383
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L S+G +E+ G R+ Y + IA N
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGN 292
>gi|379722713|ref|YP_005314844.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
gi|378571385|gb|AFC31695.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
Length = 383
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L S+G +E+ G R+ Y + IA N
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGN 292
>gi|115351567|ref|YP_773406.1| rhomboid family protein [Burkholderia ambifaria AMMD]
gi|115281555|gb|ABI87072.1| Rhomboid family protein [Burkholderia ambifaria AMMD]
Length = 639
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 131 RQWTNILLAV-NVLVYI-----AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHA 182
R W ILLAV N ++++ A + + LL WGA GQ WRL TSAFLH
Sbjct: 8 RPWLTILLAVVNTVIFVLMWRQASYGSLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHG 67
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+ HL +N Y L +G +E+ G R+
Sbjct: 68 SWVHLALNMYMLVVLGTVLERAGGTLRF 95
>gi|160935902|ref|ZP_02083276.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
gi|158441144|gb|EDP18861.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VNVLV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNVLVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
++HL N L +G ME+ G +YL Y +S +A+N+
Sbjct: 69 VSHLANNMLVLLVLGEKMERALGHIKYLIFYLASGVAANS 108
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 116 GTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKI 162
GT H +A T I R T IL+ +NV +Y+ Q + D L+ A
Sbjct: 62 GTGHAPSATTPRTIAGGTIAADPRLLTKILIGLNVALYLLQLSIGDDFTQRFELVGRASY 121
Query: 163 NSL-----IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
L + +GQ++RL TS FLH ++ H++ N SL +G +E G RYL +Y S
Sbjct: 122 EYLGPVEGVAEGQWYRLLTSMFLHGSLMHIVFNMLSLWWLGGPLEAALGRARYLALYLVS 181
Query: 218 AIASN 222
+A +
Sbjct: 182 GLAGS 186
>gi|417671381|ref|ZP_12320874.1| peptidase, S54 (rhomboid) family domain protein [Shigella
dysenteriae 155-74]
gi|332096868|gb|EGJ01858.1| peptidase, S54 (rhomboid) family domain protein [Shigella
dysenteriae 155-74]
Length = 96
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH +++HL++N ++L +G +E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMFALLVVGGVVERILGKWRLL 67
Query: 212 GVYFSSAI 219
V+ S +
Sbjct: 68 IVWLFSGV 75
>gi|57640721|ref|YP_183199.1| integral membrane protein rhomboid-like protein [Thermococcus
kodakarensis KOD1]
gi|57159045|dbj|BAD84975.1| integral membrane protein Rhomboid homolog [Thermococcus
kodakarensis KOD1]
Length = 206
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L +NV VY+ + L L G ++++ G +W+L T+ F+H NI
Sbjct: 14 TFTLFLINVAVYVVEAVLSGGNFLSIRGSVLALLGQWNYAVLNYGYWWQLFTAMFVHVNI 73
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ N Y L ++G +E++ GPRR + Y S + N
Sbjct: 74 IHIFFNMYFLLTMGRQLERVLGPRRVVMTYIVSGLVGN 111
>gi|258650339|ref|YP_003199495.1| rhomboid family protein [Nakamurella multipartita DSM 44233]
gi|258553564|gb|ACV76506.1| Rhomboid family protein [Nakamurella multipartita DSM 44233]
Length = 292
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 134 TNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+AVN+ ++ A + +L L G I + + G++WRL TS FLH N+
Sbjct: 66 TFALIAVNLAFFLVTALQSRSAMDLSYSELYLRGGLIPAEVASGEYWRLLTSGFLHGNLV 125
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
HL N SL +G +E+I G R L +Y S + ++ S
Sbjct: 126 HLATNMLSLYWLGIPLERILGRGRMLTIYLISLLGASVS 164
>gi|421593641|ref|ZP_16038177.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
gi|403700367|gb|EJZ17554.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
Length = 439
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
L+ AR +F T LLAV + VY + A + +L G +++
Sbjct: 57 LNNARYPVF-----TYALLAVLIAVYAGELAFGVEPSEAGSPTIRTLWMLGGTFRQNIVG 111
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
G++WRL T+ F+H +I HL +NC +L G E++ G R + ++F+SA+ +
Sbjct: 112 DGEWWRLFTAPFMHGSIIHLALNCVALWVAGRLFERLIGWRWFAAIFFASALGGS 166
>gi|89099189|ref|ZP_01172067.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
gi|89086035|gb|EAR65158.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
Length = 522
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH + HL++N +L +G +E+I G R+L +Y
Sbjct: 217 LIEYGAKYNPLILEGEWWRFFTPIVLHIGLLHLIMNTLALYYLGTAVERIYGSTRFLFIY 276
Query: 215 ----FSSAIAS 221
F A+AS
Sbjct: 277 ILAGFMGALAS 287
>gi|255536607|ref|YP_003096978.1| Rhomboid family protein [Flavobacteriaceae bacterium 3519-10]
gi|255342803|gb|ACU08916.1| Rhomboid family protein [Flavobacteriaceae bacterium 3519-10]
Length = 243
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
L+ +NV+V+I + Q D++ ++ A W++ T F+H + H++ N +L
Sbjct: 12 LIIINVIVFILVWLMQNDQITMYLAAFYPFSPFFHSWQIITHMFMHGSFMHILFNMMTLY 71
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIAS 221
S GP +E++ G ++YL +YF S + +
Sbjct: 72 SFGPVLEQVLGEKKYLLLYFVSGLGA 97
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I +N
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFAN 112
>gi|311105467|ref|YP_003978320.1| rhomboid family protein [Achromobacter xylosoxidans A8]
gi|310760156|gb|ADP15605.1| rhomboid family protein [Achromobacter xylosoxidans A8]
Length = 425
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 134 TNILLAVNVLVYIA---------QFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHAN 183
T +L+A NV VY A + +Q L+ WG + +L G++WRL TS FLH
Sbjct: 19 TLLLIACNVAVYCAAGFLDTRAFESLSQTSFLIDWGGNVPALTLSGEYWRLFTSMFLHVG 78
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N +L S+G +E +LGVY S + +
Sbjct: 79 FLHLAINMLALWSLGVILEARMRSWVFLGVYLLSGLCGS 117
>gi|299823020|ref|ZP_07054906.1| possible Rhomboid protease [Listeria grayi DSM 20601]
gi|299816549|gb|EFI83787.1| possible Rhomboid protease [Listeria grayi DSM 20601]
Length = 512
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T FIG ++L VL + L+ WG K N LI G++WRL T FLH
Sbjct: 185 TYTFIGL----LVLMFLVLTFTGGSTNSFNLIKWGGKFNPLIYAGEWWRLITPMFLHNGW 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ N L +GP EKI G R+ + A N
Sbjct: 241 MHIAANAVMLYIVGPWAEKIYGKWRFALILLIGGFAGN 278
>gi|212275626|ref|NP_001130636.1| uncharacterized protein LOC100191736 [Zea mays]
gi|194689702|gb|ACF78935.1| unknown [Zea mays]
gi|414589614|tpg|DAA40185.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 148
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ NC+SLNSIGP +E + GPRRYL VYFSSA+A +
Sbjct: 2 MQFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGS 37
>gi|433197241|ref|ZP_20381167.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE94]
gi|431725428|gb|ELJ89282.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE94]
Length = 625
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV++++ + KLL G ++ + G+++RL TS FLH N H++
Sbjct: 160 TYLLIIINVVIWLCMILYLNRFSDVKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHIL 219
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N SL G +E I G R L +YF S + N
Sbjct: 220 MNMLSLFIFGKIVESIVGSWRMLIIYFISGLFGN 253
>gi|385989630|ref|YP_005907928.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|385993221|ref|YP_005911519.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|424945902|ref|ZP_18361598.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|449062098|ref|YP_007429181.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
gi|339293175|gb|AEJ45286.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339296823|gb|AEJ48933.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|358230417|dbj|GAA43909.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|379026212|dbj|BAL63945.1| integral membrane protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|449030606|gb|AGE66033.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
Length = 212
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+++N LV++ Q + +L LW + S GQ +RL TSAFLH HL++N
Sbjct: 3 TYTLISLNALVFVMQVTVMGLERQLALWPPAVAS----GQTYRLVTSAFLHYGAMHLLLN 58
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +E G R+ +Y SA+ +
Sbjct: 59 MWALYVVGPPLEMWLGRLRFGALYAVSALGGS 90
>gi|421896459|ref|ZP_16326856.1| membrane protein [Ralstonia solanacearum MolK2]
gi|206587624|emb|CAQ18206.1| membrane protein [Ralstonia solanacearum MolK2]
Length = 458
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 95 RFTYALIALNVLAWLV------TLLLGGNPLQTPISILFNLGGNAAFEVQHGEWWRLLSA 148
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
FLHA + HL +N L + G T+E+I GP YL +Y + +
Sbjct: 149 TFLHAGVLHLAINMVGLYATGITVERIYGPAAYLLIYLGAGL 190
>gi|333371980|ref|ZP_08463918.1| rhomboid protease GluP [Desmospora sp. 8437]
gi|332975161|gb|EGK12063.1| rhomboid protease GluP [Desmospora sp. 8437]
Length = 215
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 155 LLLWGAKINS-LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL +GA N+ L+ G++WRL T FLH I H + N +SL +GP +E + G R++ +
Sbjct: 61 LLRFGALENTALLIDGEWWRLVTPVFLHIGITHFLFNSFSLYLLGPQLEWLFGRWRFIAL 120
Query: 214 YFSSAIASN 222
Y + I N
Sbjct: 121 YLLTGIMGN 129
>gi|395768820|ref|ZP_10449335.1| hypothetical protein Saci8_03541 [Streptomyces acidiscabies 84-104]
Length = 298
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-------IDKGQFWRLATSA 178
R T ILL + + ++AQ A D+ L+ A + +L + +GQ++RL TS
Sbjct: 83 RLVTKILLGICAVAFLAQQALGDEFTDRFDLIGRALMPALGWDQLQGVAEGQWYRLLTSM 142
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
FLH +I H++ N SL IG +E G RYL ++F S +A +
Sbjct: 143 FLHGSIIHILSNALSLWWIGGPLEAALGRARYLALFFVSGLAGS 186
>gi|149183248|ref|ZP_01861692.1| YdcA [Bacillus sp. SG-1]
gi|148849044|gb|EDL63250.1| YdcA [Bacillus sp. SG-1]
Length = 212
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
+L +V ++ ++ + + L A IN I G++WRL T F+H AHL+ N +SL
Sbjct: 38 LLFSVALVPFLPEILVYEHL----AGINLYIFNGEWWRLITPIFVHLGFAHLLFNSFSLI 93
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
P +E++ G ++ +Y + IA+N
Sbjct: 94 LFAPPLERMLGKFKFTIIYLTCGIAAN 120
>gi|110640878|ref|YP_668606.1| outer membrane protein [Escherichia coli 536]
gi|191173980|ref|ZP_03035498.1| peptidase, S54 (rhomboid) family [Escherichia coli F11]
gi|300996647|ref|ZP_07181505.1| peptidase, S54 family protein [Escherichia coli MS 200-1]
gi|422378265|ref|ZP_16458488.1| peptidase, S54 family protein [Escherichia coli MS 60-1]
gi|432470046|ref|ZP_19712099.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE206]
gi|432712334|ref|ZP_19947386.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE8]
gi|433076810|ref|ZP_20263376.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE131]
gi|110342470|gb|ABG68707.1| outer membrane protein [Escherichia coli 536]
gi|190905756|gb|EDV65377.1| peptidase, S54 (rhomboid) family [Escherichia coli F11]
gi|300304476|gb|EFJ58996.1| peptidase, S54 family protein [Escherichia coli MS 200-1]
gi|324010382|gb|EGB79601.1| peptidase, S54 family protein [Escherichia coli MS 60-1]
gi|431000113|gb|ELD16187.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE206]
gi|431259849|gb|ELF52212.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE8]
gi|431601387|gb|ELI70904.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE131]
Length = 625
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L ++G E+I G R L ++ S I
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGI 109
>gi|319651546|ref|ZP_08005673.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
gi|317396613|gb|EFV77324.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
Length = 506
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I + + V V++ A L+ +GAK N LI G++WR T LH + HL
Sbjct: 181 FTYIFIFIQVAVFLVLEAMGGSTDTSTLIKYGAKFNPLILDGEWWRFLTPIVLHIGLLHL 240
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N +L +G +E++ G R+L +Y ++
Sbjct: 241 LMNTLALFYLGSAVERVYGNLRFLFIYLAAGFGGT 275
>gi|224541443|ref|ZP_03681982.1| hypothetical protein CATMIT_00605 [Catenibacterium mitsuokai DSM
15897]
gi|224525635|gb|EEF94740.1| peptidase, S54 family [Catenibacterium mitsuokai DSM 15897]
Length = 183
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 138 LAVNVLVYIAQFATQDKL---LLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYS 193
+ + V VYI F+ +K + GA + ++G++WR TSAF+H HL +N Y
Sbjct: 3 ICIAVFVYINYFSKDNKTSEAMHLGALYTPYVKNRGEYWRFITSAFIHTEFLHLFMNMYC 62
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ +G E I GP RYL + S + S+
Sbjct: 63 IFYLGRLFETILGPVRYLILVLVSIVMSS 91
>gi|239617958|ref|YP_002941280.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506789|gb|ACR80276.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
Length = 285
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T IL+ +N+ VY F + +L++G + +G F+ T+ FLH N+
Sbjct: 10 TIILIIINLAVYFFVFILSHSRRTIDLYNLILIYGGISRGALLRGLFYTPLTALFLHGNM 69
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N Y+L +G +E I G R++L YF S I N
Sbjct: 70 LHILFNMYALFQLGYLVEGIYGMRKFLIFYFVSGIIGN 107
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 126 NLFIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQFW-RLATSAF 179
N F G T L+A+NVLVY+ A +T +L+ GA + ++I G W L TS F
Sbjct: 3 NFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAGWASLFTSMF 62
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+H HL+ N +L IG +E++ G R+L +Y S I +N
Sbjct: 63 VHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFAN 105
>gi|332157726|ref|YP_004423005.1| hypothetical protein PNA2_0084 [Pyrococcus sp. NA2]
gi|331033189|gb|AEC51001.1| hypothetical protein PNA2_0084 [Pyrococcus sp. NA2]
Length = 192
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+IN + G++WRL T+ F H H +N + L +G +E + G +R+L V+F+SA+
Sbjct: 38 GQINYFVLTGEWWRLITAIFTHVGFIHFGLNIFWLFYLGMDLEGLVGTKRFLIVFFASAL 97
Query: 220 ASN 222
N
Sbjct: 98 VGN 100
>gi|218688472|ref|YP_002396684.1| hypothetical protein ECED1_0646 [Escherichia coli ED1a]
gi|218426036|emb|CAR06853.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli ED1a]
Length = 625
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|117622865|ref|YP_851778.1| hypothetical protein APECO1_1407 [Escherichia coli APEC O1]
gi|417083123|ref|ZP_11951259.1| hypothetical protein i01_00854 [Escherichia coli cloneA_i1]
gi|419945366|ref|ZP_14461811.1| hypothetical protein ECHM605_15043 [Escherichia coli HM605]
gi|432596557|ref|ZP_19832840.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE62]
gi|433004142|ref|ZP_20192580.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE227]
gi|433011351|ref|ZP_20199756.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE229]
gi|433152765|ref|ZP_20337733.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE176]
gi|433162463|ref|ZP_20347224.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE179]
gi|115511989|gb|ABJ00064.1| hypothetical protein APECO1_1407 [Escherichia coli APEC O1]
gi|355352991|gb|EHG02164.1| hypothetical protein i01_00854 [Escherichia coli cloneA_i1]
gi|388415804|gb|EIL75715.1| hypothetical protein ECHM605_15043 [Escherichia coli HM605]
gi|431133460|gb|ELE35450.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE62]
gi|431517463|gb|ELH94985.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE227]
gi|431519563|gb|ELH97015.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE229]
gi|431678345|gb|ELJ44349.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE176]
gi|431691820|gb|ELJ57271.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE179]
Length = 625
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW + +L D +++RL TS FLH HL+ N
Sbjct: 40 TYTLIAVNVLMFVLQIAGGDLESRLTLWPPAL-ALHD--EYYRLVTSMFLHYGAMHLLFN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +EK G R+ +Y S + +
Sbjct: 97 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGS 128
>gi|91209698|ref|YP_539684.1| hypothetical protein UTI89_C0653 [Escherichia coli UTI89]
gi|386598393|ref|YP_006099899.1| peptidase, S54 (rhomboid) family [Escherichia coli IHE3034]
gi|386605429|ref|YP_006111729.1| hypothetical protein UM146_14270 [Escherichia coli UM146]
gi|422359103|ref|ZP_16439752.1| peptidase, S54 family protein [Escherichia coli MS 110-3]
gi|422839140|ref|ZP_16887112.1| hypothetical protein ESPG_01798 [Escherichia coli H397]
gi|432356961|ref|ZP_19600208.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE4]
gi|432572610|ref|ZP_19809101.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE55]
gi|432586914|ref|ZP_19823286.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE58]
gi|432753412|ref|ZP_19987980.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE22]
gi|432777553|ref|ZP_20011804.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE59]
gi|432786342|ref|ZP_20020508.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE65]
gi|432819934|ref|ZP_20053648.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE118]
gi|432826148|ref|ZP_20059804.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE123]
gi|433167476|ref|ZP_20352144.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE180]
gi|91071272|gb|ABE06153.1| hypothetical protein UTI89_C0653 [Escherichia coli UTI89]
gi|294490526|gb|ADE89282.1| peptidase, S54 (rhomboid) family [Escherichia coli IHE3034]
gi|307627913|gb|ADN72217.1| hypothetical protein UM146_14270 [Escherichia coli UM146]
gi|315287096|gb|EFU46510.1| peptidase, S54 family protein [Escherichia coli MS 110-3]
gi|371611161|gb|EHN99687.1| hypothetical protein ESPG_01798 [Escherichia coli H397]
gi|430879771|gb|ELC03102.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE4]
gi|431110948|gb|ELE14865.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE55]
gi|431124194|gb|ELE26848.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE58]
gi|431305793|gb|ELF94114.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE22]
gi|431330153|gb|ELG17435.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE59]
gi|431341471|gb|ELG28478.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE65]
gi|431370936|gb|ELG56729.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE118]
gi|431374344|gb|ELG59936.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE123]
gi|431693476|gb|ELJ58889.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE180]
Length = 625
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|432396557|ref|ZP_19639344.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE25]
gi|432722187|ref|ZP_19957112.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE17]
gi|432726730|ref|ZP_19961612.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE18]
gi|432740416|ref|ZP_19975138.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE23]
gi|432989728|ref|ZP_20178396.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE217]
gi|433109950|ref|ZP_20295826.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE150]
gi|430917694|gb|ELC38734.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE25]
gi|431268210|gb|ELF59691.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE17]
gi|431275439|gb|ELF66468.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE18]
gi|431286545|gb|ELF77371.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE23]
gi|431498180|gb|ELH77394.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE217]
gi|431631153|gb|ELI99472.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE150]
Length = 625
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFVTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I +N
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFAN 112
>gi|422369065|ref|ZP_16449468.1| peptidase, S54 family protein [Escherichia coli MS 16-3]
gi|432897487|ref|ZP_20108396.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE192]
gi|433027657|ref|ZP_20215532.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE109]
gi|315299195|gb|EFU58449.1| peptidase, S54 family protein [Escherichia coli MS 16-3]
gi|431429533|gb|ELH11461.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE192]
gi|431545727|gb|ELI20374.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE109]
Length = 625
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW + +L D +++RL TS FLH HL+ N
Sbjct: 86 TYTLIAVNVLMFVLQIAGGDLESRLTLWPPAL-ALHD--EYYRLVTSMFLHYGAMHLLFN 142
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +EK G R+ +Y S + +
Sbjct: 143 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGS 174
>gi|229491196|ref|ZP_04385024.1| rhomboid family protein [Rhodococcus erythropolis SK121]
gi|229321934|gb|EEN87727.1| rhomboid family protein [Rhodococcus erythropolis SK121]
Length = 240
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINS-------LIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I + L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
HL VN Y+L +G E + G RY+G+Y S + + S
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSAS 110
>gi|300937875|ref|ZP_07152668.1| peptidase, S54 family protein [Escherichia coli MS 21-1]
gi|432679090|ref|ZP_19914490.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE143]
gi|300457118|gb|EFK20611.1| peptidase, S54 family protein [Escherichia coli MS 21-1]
gi|431224488|gb|ELF21709.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE143]
Length = 625
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L V+ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGV 109
>gi|229083526|ref|ZP_04215864.1| Rhomboid [Bacillus cereus Rock3-44]
gi|228699780|gb|EEL52427.1| Rhomboid [Bacillus cereus Rock3-44]
Length = 186
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A N I KG++WRL TS F+H + H + N L +G ++EK G R++ ++F++ I
Sbjct: 36 AAYNEYISKGEYWRLITSLFIHVDFQHFLSNSICLFFLGQSIEKQLGSIRFILLFFTAGI 95
Query: 220 ASN 222
+ N
Sbjct: 96 SGN 98
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WRL + LH+ H++ N +SL GP +E++ G R++ +Y ++
Sbjct: 47 AGVNLYIVQGEYWRLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGA 106
Query: 220 ASN 222
A+N
Sbjct: 107 AAN 109
>gi|453068740|ref|ZP_21972014.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
gi|452765301|gb|EME23561.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
Length = 240
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINS-------LIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I + L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
HL VN Y+L +G E + G RY+G+Y S + + S
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSAS 110
>gi|405979365|ref|ZP_11037709.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392746|gb|EJZ87804.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 284
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
T L+ +NV ++I F L L G + N + Q WR T+AFLH+ H+ N
Sbjct: 70 TYTLIGINVALFILSFV----LPLVGNWLFFNPAVGYRQVWRFLTTAFLHSGFMHIAFNM 125
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L S+G +E++ G RYL VY SAI ++
Sbjct: 126 LALYSVGVELEQVLGRTRYLSVYLLSAIGAS 156
>gi|398348471|ref|ZP_10533174.1| intramembrane serine protease [Leptospira broomii str. 5399]
Length = 199
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
+G+++ L TSAFLH++I HLM N +L GP +E G ++G+YF++ +A++
Sbjct: 38 EGRYYTLITSAFLHSDIFHLMFNMITLYFFGPAVEYTIGGLGFVGIYFTAILAASG 93
>gi|282882140|ref|ZP_06290781.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
gi|281298170|gb|EFA90625.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
Length = 237
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ D L+ + A L+ +GQ+WRL F+H AHL++N
Sbjct: 24 LITINIIVFLIMTLCGGSQNIDVLVKFNAMNKILVYQGQWWRLICPTFIHIGFAHLLMNM 83
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Y L +G E + G RYL +Y + + N
Sbjct: 84 YFLYIVGSIFENLYGSLRYLIIYIACGLMGN 114
>gi|149922613|ref|ZP_01911041.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149816499|gb|EDM75996.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 368
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 145 YIAQFATQDKLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
Y+ F + L WGA N ID GQ+WRLA++ FLH + HL +N ++ S+G E
Sbjct: 50 YLVLFEDLELLEAWGALTPANIWID-GQWWRLASAGFLHGSWLHLGLNMLAMWSVGRWTE 108
Query: 203 KICGPRRYLGVYFSSAIAS 221
I GP R L ++ +S++
Sbjct: 109 SIWGPWRQLALFMASSLGG 127
>gi|331645813|ref|ZP_08346916.1| outer membrane protein [Escherichia coli M605]
gi|417661194|ref|ZP_12310775.1| putative membrane protein [Escherichia coli AA86]
gi|330910412|gb|EGH38922.1| putative membrane protein [Escherichia coli AA86]
gi|331044565|gb|EGI16692.1| outer membrane protein [Escherichia coli M605]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|218557587|ref|YP_002390500.1| hypothetical protein ECS88_0691 [Escherichia coli S88]
gi|432361433|ref|ZP_19604618.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
gi|218364356|emb|CAR02031.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|430889951|gb|ELC12598.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E I G ++L Y
Sbjct: 39 LLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFSY 98
Query: 215 FSSAIASN 222
F + + N
Sbjct: 99 FFTGVVGN 106
>gi|326692732|ref|ZP_08229737.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLN 195
+ V V++ Q A L+ GAK I Q+WRL T FLHA H++ N +L
Sbjct: 25 MFVVEVIMGHGQIANGQLLVTLGAKWGPGIAIDHQYWRLLTPIFLHAGWLHIITNMLTLW 84
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
IGP E + G R++LG+Y + N
Sbjct: 85 FIGPLAEAVFGHRKFLGLYLFGGVVGN 111
>gi|357053297|ref|ZP_09114395.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
gi|355385874|gb|EHG32920.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
Length = 206
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VN LV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNALVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
++HL N L +G MEK G +YL Y +S +A+N
Sbjct: 69 VSHLANNMLVLLVLGEKMEKALGHIKYLIFYLASGVAANG 108
>gi|386618111|ref|YP_006137691.1| hypothetical protein ECNA114_0595 [Escherichia coli NA114]
gi|432420742|ref|ZP_19663298.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE178]
gi|432557648|ref|ZP_19794338.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE49]
gi|432709464|ref|ZP_19944531.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE6]
gi|432893393|ref|ZP_20105405.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE165]
gi|333968612|gb|AEG35417.1| Hypothetical protein ECNA114_0595 [Escherichia coli NA114]
gi|430947214|gb|ELC66921.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE178]
gi|431094083|gb|ELD99733.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE49]
gi|431251633|gb|ELF45640.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE6]
gi|431424373|gb|ELH06469.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE165]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|116617786|ref|YP_818157.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096633|gb|ABJ61784.1| Membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 227
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N +L IGP +E+ G ++ G+YF I N
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSTKFFGLYFFGGIIGN 110
>gi|419915295|ref|ZP_14433661.1| outer membrane protein [Escherichia coli KD1]
gi|388384087|gb|EIL45829.1| outer membrane protein [Escherichia coli KD1]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|432464637|ref|ZP_19706745.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE205]
gi|432582735|ref|ZP_19819145.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE57]
gi|433071724|ref|ZP_20258420.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE129]
gi|433119225|ref|ZP_20304934.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE157]
gi|433182212|ref|ZP_20366509.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE85]
gi|430997388|gb|ELD13655.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE205]
gi|431119751|gb|ELE22750.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE57]
gi|431592815|gb|ELI63384.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE129]
gi|431648768|gb|ELJ16142.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE157]
gi|431711300|gb|ELJ75653.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE85]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|432405489|ref|ZP_19648211.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE28]
gi|430932406|gb|ELC52829.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE28]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|432445108|ref|ZP_19687416.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE191]
gi|433022472|ref|ZP_20210488.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE106]
gi|433323351|ref|ZP_20400700.1| hypothetical protein B185_007728 [Escherichia coli J96]
gi|430975830|gb|ELC92714.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE191]
gi|431540155|gb|ELI15784.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE106]
gi|432348054|gb|ELL42506.1| hypothetical protein B185_007728 [Escherichia coli J96]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|453381363|dbj|GAC84026.1| rhomboid family protein [Gordonia paraffinivorans NBRC 108238]
Length = 294
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 137 LLAVNVLVYI---AQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+AVNVLV++ AQ D L G + S + G++WRL T+ FLH ++ H+ V
Sbjct: 74 LIAVNVLVFLLCAAQAGFGDPGAAPLFAEGDLLKSDVASGEYWRLLTAGFLHFSVMHIAV 133
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
N SL +G +E G RYL +Y + + + +
Sbjct: 134 NMLSLYILGRDLELALGMFRYLAIYLIALLGGSAA 168
>gi|331086792|ref|ZP_08335869.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409958|gb|EGG89393.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 209
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S+++ G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEDGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
M N + L IG +E G +YL VY S + N
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLTVYLLSGLMGN 104
>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana]
gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana]
gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana]
gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 434
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI G++WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 216 LLYGAKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 275
Query: 216 SSAIASN 222
++ N
Sbjct: 276 LGGVSGN 282
>gi|432439995|ref|ZP_19682350.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE189]
gi|433012848|ref|ZP_20201226.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE104]
gi|430969227|gb|ELC86377.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE189]
gi|431535119|gb|ELI11502.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE104]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 28/117 (23%)
Query: 134 TNILLAVNVLVYIAQFATQ-------------------DKLLLWGAKINSL--------- 165
T L+A+NVL+ + A+ L WGA +
Sbjct: 40 TKALIAINVLIMLVSIASDRGGDAAAGGTGFGGLMGGSTPLTEWGAVLGRAMFLDGSIGG 99
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ +GQ++RL T+ FLH I HL++N ++L +G ++E + GP R+ +YF + N
Sbjct: 100 VAEGQWYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAGFGGN 156
>gi|423721476|ref|ZP_17695658.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383365527|gb|EID42822.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 204
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 157 LWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW I N+ I KG++WR T LH H+++N SL GP +E + G ++L +Y
Sbjct: 42 LWEKMIGFNAAIKKGEYWRFVTPLILHVRFEHMVINSISLILFGPALENMLGKGKFLILY 101
Query: 215 FSSAIASNNS 224
S I +N +
Sbjct: 102 IGSGIFANVA 111
>gi|153808412|ref|ZP_01961080.1| hypothetical protein BACCAC_02706 [Bacteroides caccae ATCC 43185]
gi|149128734|gb|EDM19951.1| peptidase, S54 family [Bacteroides caccae ATCC 43185]
Length = 584
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIAS 221
Y + + S
Sbjct: 244 ISYLLTGVCS 253
>gi|403509381|ref|YP_006641019.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402803589|gb|AFR10999.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 256
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 25/127 (19%)
Query: 115 EGTSHLDTARTNLFIGR-------QWTNILLAVNVLVYIAQFATQDKL------------ 155
EG + +ART F G+ W+ +L + V+ ++ Q T L
Sbjct: 16 EGNRRVRSARTT-FGGKVVDKPYVTWS--ILVMMVVGFVLQLGTSTPLGQALSTPLVQHF 72
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+WG ++ G+++RL T+AFLH + HL+ N Y++ ++GP +E+ G R+L ++F
Sbjct: 73 SMWG---QGVVWHGEWYRLITAAFLHGGVLHLLFNSYAMYALGPQLERWLGHGRFLALWF 129
Query: 216 SSAIASN 222
A++ +
Sbjct: 130 LGALSGS 136
>gi|83646149|ref|YP_434584.1| hypothetical protein HCH_03410 [Hahella chejuensis KCTC 2396]
gi|83634192|gb|ABC30159.1| uncharacterized membrane protein [Hahella chejuensis KCTC 2396]
Length = 294
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+L WGA + GQ+WRL + FLH I HL +N ++L G +E++ G R+L ++
Sbjct: 47 MLQWGANFSPATQNGQWWRLDAAIFLHFGIVHLTLNAWALWDGGQWVERMYGQMRFLIIF 106
Query: 215 FSSAIASN 222
+S + N
Sbjct: 107 ITSGLIGN 114
>gi|168699238|ref|ZP_02731515.1| Rhomboid-like protein [Gemmata obscuriglobus UQM 2246]
Length = 418
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N++++ A+ +LL WGA G++WR T F+H I
Sbjct: 76 TRVLVAINLVIFGLMGASGLSLNQPSPAELLKWGADFGPNTLNGEWWRALTCMFVHIGIL 135
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+++N + L++ GP +E++ G +L Y S + +
Sbjct: 136 HILMNMWVLSATGPLVERMLGNAGFLVAYLVSGLGGS 172
>gi|423219507|ref|ZP_17206003.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
gi|392625402|gb|EIY19471.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
Length = 584
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIAS 221
Y + + S
Sbjct: 244 ISYLLTGVCS 253
>gi|366164287|ref|ZP_09464042.1| rhomboid family protein [Acetivibrio cellulolyticus CD2]
Length = 519
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
I L +N+ I + + +GAK N I G++WR T FLHA++ HL N SL
Sbjct: 192 IWLVMNIYARIKNIDVSNLFIPFGAKENFSIMSGEYWRFITPIFLHADLEHLFANSLSLF 251
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E + G +++ +Y ++ + N
Sbjct: 252 VFGRIVEGMYGHKKFTFIYLAAGVIGN 278
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 131 RQWTNILLAVNVLVYIA---QFATQDKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R +T IL+ +NV V+IA + + L L GA + + GQ++RL TS F H
Sbjct: 82 RLFTKILIGINVAVFIAIQAKASLATDLSLVGAWPPAPFQPTEGVADGQYYRLVTSMFAH 141
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I H+ N SL +G +E G RYL VYF S +A
Sbjct: 142 QEIWHIGFNMMSLWWLGGPLEAALGRARYLTVYFVSGLAGG 182
>gi|359771058|ref|ZP_09274523.1| rhomboid family protein [Gordonia effusa NBRC 100432]
gi|359311809|dbj|GAB17301.1| rhomboid family protein [Gordonia effusa NBRC 100432]
Length = 221
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+ G++WRL T+ FLH ++ HL VN SL +G ++E GPR+Y VY ++
Sbjct: 50 LAGGEYWRLLTAGFLHLSLIHLGVNMLSLYVLGVSLEPALGPRQYTAVYLTA 101
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ F + +L+ G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIIVWLFMFLVLNAFSDTRLIDLGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G + LG+Y S I N
Sbjct: 222 LSLFIFGKLVEAIVGHWKMLGIYLISGIFGN 252
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKIN-----SLIDKGQFWRLATSAFL 180
R T +L+ VN+ +++ Q + D+ LL A I + +GQ++RL T+ FL
Sbjct: 84 RLVTKVLIGVNLALFLVQLSVGDRFTQRFELLGQAYITFPGPVEGVAEGQWYRLLTAMFL 143
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H H++ N SL +G +E G RYL +YF S +A +
Sbjct: 144 HTGYMHILFNMLSLWWLGGPLEGALGRARYLALYFCSGLAGS 185
>gi|227432339|ref|ZP_03914331.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|381336263|ref|YP_005174038.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|227351860|gb|EEJ42094.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|356644229|gb|AET30072.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 227
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N +L IGP +E+ G ++ G+YF I N
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSAKFFGLYFFGGIIGN 110
>gi|386841294|ref|YP_006246352.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101595|gb|AEY90479.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
Length = 281
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 69 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 128
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ N SL IG +E G RYL VYF S +A
Sbjct: 129 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGG 169
>gi|254295337|ref|YP_003061360.1| rhomboid family protein [Hirschia baltica ATCC 49814]
gi|254043868|gb|ACT60663.1| Rhomboid family protein [Hirschia baltica ATCC 49814]
Length = 208
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+ +G T L+A NV + F+ + + ++ K Q++R+ TS FLH +
Sbjct: 3 EVLLGAPITLALIAANVAFSLIGFSNEKFFRANYLLVGDIVQKHQWYRVLTSGFLHVSPG 62
Query: 186 HLMVNCYSLNSIGPTME-KICGPRRYLGVYFSSAIASN 222
HL++N +L GP +E K+ GP YL VYF S IA
Sbjct: 63 HLLLNMLTLFFFGPYLEIKLLGPTGYLLVYFVSLIAGG 100
>gi|451794589|gb|AGF64638.1| hypothetical protein SHJGH_4975 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 295
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 83 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 142
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ N SL IG +E G RYL VYF S +A
Sbjct: 143 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGG 183
>gi|300814558|ref|ZP_07094812.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511326|gb|EFK38572.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 237
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ D L+ + A L+ +GQ+WRL F+H AHL++N
Sbjct: 24 LITINIIVFLIMTLCGGSQNIDVLVKFNAMNKILVYQGQWWRLICPIFIHIGFAHLLMNM 83
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Y L +G E + G RYL +Y + + N
Sbjct: 84 YFLYIVGSIFENLYGSLRYLIIYIACGLMGN 114
>gi|226182622|dbj|BAH30726.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 266
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKI-------NSLIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I L+ G ++RL S FLH I
Sbjct: 37 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 96
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
HL VN Y+L +G E + G RY+G+Y S + + S
Sbjct: 97 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSAS 136
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V YI Q A + G +I + Q++RL T+AFLHA
Sbjct: 68 TQILIGLCVAAYILQGAPGLTGRGTFNRFTGDFAMIGIRIAA---DDQYYRLLTAAFLHA 124
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
+ H++ N Y+L +G +E I G RYL ++ + A+ N
Sbjct: 125 GVLHILFNMYALYLLGFQLEAILGRARYLALFVAGALGGNT 165
>gi|387902202|ref|YP_006332541.1| rhomboid family protein [Burkholderia sp. KJ006]
gi|387577094|gb|AFJ85810.1| Rhomboid family protein [Burkholderia sp. KJ006]
Length = 658
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 131 RQWTNILLAV-NVLVYI-----AQFA--TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W I+LAV N+ +++ A + + LL WGA GQ WRL TSAFLH
Sbjct: 23 RPWLTIVLAVVNIAIFVLMWRAASYGDLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHG 82
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+ H+ +N Y L +G +E++ G R+
Sbjct: 83 SWMHVALNMYMLIVLGTVLERVGGTLRF 110
>gi|170289832|ref|YP_001736648.1| membrane associated serine protease [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170173912|gb|ACB06965.1| Membrane associated serine protease [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 203
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 132 QWTNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T+IL+++N+ +Y FA L +G+ + LI G++ L TS FLHAN+ H
Sbjct: 29 EITSILMSLNIGIYFLTSPTLLFADSPILFKYGSSGSYLIS-GRYETLITSMFLHANLMH 87
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L +N Y+L +G E G +++ +YF S + N
Sbjct: 88 LFLNMYALYILGKVAEISLGRTKFISLYFLSGLVGN 123
>gi|313679165|ref|YP_004056904.1| rhomboid family protein [Oceanithermus profundus DSM 14977]
gi|313151880|gb|ADR35731.1| Rhomboid family protein [Oceanithermus profundus DSM 14977]
Length = 224
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDK-------GQFWRLATSAFLHANIAH 186
T +L+A NVLV+ Q + + W + K G+F R+ TS FLH H
Sbjct: 17 TRLLIAANVLVFFWQLSLGPEGFRWAVNAYGFVPKFFFADPAGEFGRIFTSMFLHGGFEH 76
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++ N + L GP +E G RYL VY + I +
Sbjct: 77 ILGNMWFLWIFGPAVEARLGGGRYLLVYLLAGIGA 111
>gi|387828647|ref|YP_003348584.1| hypothetical protein ECSF_0594 [Escherichia coli SE15]
gi|432498877|ref|ZP_19740655.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE216]
gi|432693418|ref|ZP_19928630.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE162]
gi|432917810|ref|ZP_20122293.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE173]
gi|432925116|ref|ZP_20127207.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE175]
gi|432980136|ref|ZP_20168915.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE211]
gi|433095559|ref|ZP_20281772.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE139]
gi|433104768|ref|ZP_20290789.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE148]
gi|281177804|dbj|BAI54134.1| conserved hypothetical protein [Escherichia coli SE15]
gi|431032026|gb|ELD44750.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE216]
gi|431236655|gb|ELF31860.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE162]
gi|431446684|gb|ELH27428.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE173]
gi|431448588|gb|ELH29303.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE175]
gi|431494131|gb|ELH73721.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE211]
gi|431619615|gb|ELI88535.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE139]
gi|431634300|gb|ELJ02551.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE148]
Length = 625
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S +
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGV 109
>gi|159900030|ref|YP_001546277.1| rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893069|gb|ABX06149.1| Rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
Length = 286
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 159 GAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK + L+D G++WRL T+ LH I H+ N Y+L ++GPT+E+ G R+ +Y +
Sbjct: 69 GAKWSPLMDIGGEWWRLFTATVLHGGIVHIGFNMYALYALGPTVERFYGSLRFSVIYLIA 128
Query: 218 AIAS 221
I
Sbjct: 129 GIGG 132
>gi|430745812|ref|YP_007204941.1| hypothetical protein Sinac_5094 [Singulisphaera acidiphila DSM
18658]
gi|430017532|gb|AGA29246.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 306
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWG---AKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T ++ +NV+V+ Q QD+ L W A + + G W+L T+ F+HA + HL+ N
Sbjct: 26 TKAIIVINVIVFFLQPILQDRGL-WNYFIASSDGIFRHGYVWQLLTATFMHAGVYHLLWN 84
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L +G ME G R ++ Y +A+ S
Sbjct: 85 MVFLWMVGREMESFYGTRDFVAFYLCAAVLST 116
>gi|134295675|ref|YP_001119410.1| rhomboid family protein [Burkholderia vietnamiensis G4]
gi|134138832|gb|ABO54575.1| Rhomboid family protein [Burkholderia vietnamiensis G4]
Length = 643
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 131 RQWTNILLAV-NVLVYI-----AQFA--TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W I+LAV N+ +++ A + + LL WGA GQ WRL TSAFLH
Sbjct: 8 RPWLTIVLAVVNIAIFVLMWRAASYGDLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHG 67
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+ H+ +N Y L +G +E++ G R+
Sbjct: 68 SWMHVALNMYMLIVLGTVLERVGGTLRF 95
>gi|345022776|ref|ZP_08786389.1| hypothetical protein OTW25_15910 [Ornithinibacillus scapharcae
TW25]
Length = 254
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++L G + +I +G++WR T FLH + H++ N +SL GP +E++ G +L
Sbjct: 42 ERLYDLGVGHHYMIHQGEYWRFITPIFLHGGLMHMLFNSFSLVLFGPALERMIGKSMFLI 101
Query: 213 VYFSSAIASN 222
Y + + +N
Sbjct: 102 AYLGAGVLAN 111
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIITSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R LG+YF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLGIYFIAGLFGN 253
>gi|347548722|ref|YP_004855050.1| hypothetical protein LIV_1288 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346981793|emb|CBW85766.1| Putative yqgP [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 512
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR T FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFITPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 ILGGICGN 278
>gi|56962578|ref|YP_174304.1| hypothetical protein ABC0804 [Bacillus clausii KSM-K16]
gi|56908816|dbj|BAD63343.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 253
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N+ I G++WRL T FLH + HL N ++L P +E + G R+++ +Y S
Sbjct: 45 GMGWNAAILAGEYWRLVTPIFLHGGLFHLFSNMFALLIFAPALEVMLGKRKFVTIYLISG 104
Query: 219 IASN 222
+ +N
Sbjct: 105 VLAN 108
>gi|415836498|ref|ZP_11518883.1| rhomboid family protein [Escherichia coli RN587/1]
gi|416337832|ref|ZP_11674146.1| Putative membrane protein [Escherichia coli WV_060327]
gi|417284154|ref|ZP_12071449.1| peptidase, S54 family [Escherichia coli 3003]
gi|425276501|ref|ZP_18667843.1| hypothetical protein ECARS42123_0673 [Escherichia coli ARS4.2123]
gi|320194168|gb|EFW68800.1| Putative membrane protein [Escherichia coli WV_060327]
gi|323191289|gb|EFZ76553.1| rhomboid family protein [Escherichia coli RN587/1]
gi|386242363|gb|EII84098.1| peptidase, S54 family [Escherichia coli 3003]
gi|408206956|gb|EKI31721.1| hypothetical protein ECARS42123_0673 [Escherichia coli ARS4.2123]
Length = 625
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L +G E+I G R L ++ S I
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGI 109
>gi|296005098|ref|XP_002808884.1| rhomboid protease ROM3, putative [Plasmodium falciparum 3D7]
gi|225632283|emb|CAX64162.1| rhomboid protease ROM3, putative [Plasmodium falciparum 3D7]
Length = 267
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L GA LI +GQ+WRL FLHAN+ HL++N + ++G +E ++L +Y
Sbjct: 73 LILLGATYGPLIKEGQYWRLVLPIFLHANLWHLIINILCILNLGLIIESKYKKSKFLLIY 132
Query: 215 FSSAIASN 222
F S N
Sbjct: 133 FLSGATGN 140
>gi|319954281|ref|YP_004165548.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319422941|gb|ADV50050.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 251
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
L+ +NVL ++A A D++ W A + + W++ T F+H AH++ N + L
Sbjct: 11 LIIINVLFFVATLAIGDQMYEWFALWFPKNENFRIWQVITHMFMHGGPAHILFNMFGLWM 70
Query: 197 IGPTMEKICGPRRYLGVYFSSAIAS 221
G ++E+ G +++L +YFS+ + +
Sbjct: 71 FGSSVEEYLGKKQFLFLYFSAGLGA 95
>gi|227515651|ref|ZP_03945700.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
gi|227086081|gb|EEI21393.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
Length = 221
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ V VLVY+ A AT LL GA + GQ+WR+ T+AFLH + HL
Sbjct: 11 TCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTHLF 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N L +G T+E++ G R +Y S + N
Sbjct: 71 LNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGN 104
>gi|288554843|ref|YP_003426778.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
gi|288546003|gb|ADC49886.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
Length = 246
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + G++WRL T F+H I H++ N +SL GP +E++ G R++ Y +
Sbjct: 45 GIGYNLAVANGEWWRLITPIFMHLTIGHVVFNSFSLVIFGPALEQMLGKFRFIIFYLGTG 104
Query: 219 IASN 222
+ +N
Sbjct: 105 VIAN 108
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVN++++ Q A+ + L LW G+ +RL TSAFLH ++ H+ N
Sbjct: 80 TYVLIAVNLVMFALQMASPNLERALGLWPPAA----ADGELYRLVTSAFLHFSVTHIAFN 135
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +GP +E G R++ +Y SA+ +
Sbjct: 136 MLALYFVGPPLEHALGRLRFVALYLLSALGGS 167
>gi|344201594|ref|YP_004786737.1| peptidase S54, rhomboid domain-containing protein [Muricauda
ruestringensis DSM 13258]
gi|343953516|gb|AEM69315.1| Peptidase S54, rhomboid domain protein [Muricauda ruestringensis
DSM 13258]
Length = 244
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
+L +NV++++A D++ W + ++W++ T F+H N H++ N Y+L +
Sbjct: 11 ILIINVIMFLATQLYGDQMYQWMSLWFPKNSNFEWWQVVTHMFMHGNFMHILFNMYALWA 70
Query: 197 IGPTMEKICGPRRYLGVYFSSAIAS 221
G +E+I G ++L YFS+ + S
Sbjct: 71 FGTPLERIWGRNKFLFFYFSAGLGS 95
>gi|336430826|ref|ZP_08610764.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016582|gb|EGN46362.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 209
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+L A NV++++ T D L + G LI +++RL T+ FLHA+I+HL+ N L
Sbjct: 23 VLTAANVIIFLVCQFTGDWLYIKGEFGAFYLIRSQEYYRLVTAMFLHADISHLVNNMILL 82
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +EK G RYL ++F S I N
Sbjct: 83 YFGGEIVEKTIGSVRYLVLFFVSGICGN 110
>gi|291548753|emb|CBL25015.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus torques L2-14]
Length = 206
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+LV+IA T+D + GA +I+ +++RL TS FLH I+HL
Sbjct: 10 TIMLIGINILVFIALTMIGRTEDGYFMLQHGAMYEPYIIENQEYYRLFTSLFLHFGISHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ N L ++G EK G R+L YF S I N
Sbjct: 70 LNNMVLLWALGSIFEKEAGKIRFLFCYFISGIGGN 104
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 131 RQWTNILLAVNVLVYI---AQFATQDKLLLWG-AKINSL------IDKGQFWRLATSAFL 180
R T IL+ +N+ V++ A A +D LLL+G A ++ + +GQ++RL TS FL
Sbjct: 86 RLITKILIGINLAVFVGVLAHPALRDDLLLFGRAYVDERSAGYQGVAEGQWYRLVTSTFL 145
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H + H+ N L +G +E G RYL +Y S +A +
Sbjct: 146 HQEVWHIAFNMLGLWWLGGPLESALGRARYLALYLLSGLAGS 187
>gi|184155757|ref|YP_001844097.1| hypothetical protein LAF_1281 [Lactobacillus fermentum IFO 3956]
gi|260663527|ref|ZP_05864417.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
gi|183227101|dbj|BAG27617.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552068|gb|EEX25121.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
Length = 221
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ V VLVY+ A AT LL GA + GQ+WR+ T+AFLH + HL
Sbjct: 11 TCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTHLF 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N L +G T+E++ G R +Y S + N
Sbjct: 71 LNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGN 104
>gi|227494200|ref|ZP_03924516.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831934|gb|EEH64317.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 309
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 100 LSFFNGGGTRKNSGHEGTSHLDTARTNLF--IGRQWTNILLAVNV---LVYIAQFATQDK 154
L ++GG K + + + TA+ +F +G TN+++A+ V L+ + A +
Sbjct: 63 LKIYSGG---KTQAPQPAAAVKTAKNKVFAKLGYSVTNVIIAITVATSLLAMLIPAVGNF 119
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L N ++ + WR T +H + HL +N YSL +G ++E++ G RYL +Y
Sbjct: 120 LFF-----NPILGYKEPWRFLTVMLVHGGLIHLALNMYSLYLVGNSLERVLGTYRYLALY 174
Query: 215 FSSAIASN 222
+S + +
Sbjct: 175 VASGLGGS 182
>gi|288555804|ref|YP_003427739.1| rhomboid protein membrane-associated serine peptidase [Bacillus
pseudofirmus OF4]
gi|288546964|gb|ADC50847.1| rhomboid protein, putative membrane-associated serine peptidase
[Bacillus pseudofirmus OF4]
Length = 512
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 136 ILLAVNVLVYIAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+L+ + V+ YI + L+ +GAK N I +G++WR +S FLH HL +N
Sbjct: 189 LLIMIAVMFYIVEQNGGSTHVLTLIEFGAKYNPAILEGEWWRFFSSMFLHIGFIHLFMNS 248
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+L +G +E++ G R++ +YF + + + S
Sbjct: 249 LALFYLGGAVERMYGTSRFVLIYFIAGLIGSIS 281
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLL----LWG-------AKINSLIDKGQFWRLATSAF 179
R T IL+A+N+ V++A + D+L+ L G A+I + +GQ+WRL TS F
Sbjct: 80 RLITKILVAINIAVWLAALSAGDRLVNDLDLVGRAYDPGAAQIVG-VAEGQWWRLVTSIF 138
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LH + H+ N SL IG +E G R++ +Y S + +
Sbjct: 139 LHQQLIHIAFNMLSLWWIGGPLEAALGRVRFIVLYILSGLGGS 181
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I GQ++RL T+ FLH + HL++N Y+L +G T+E GP R+L +Y + + N
Sbjct: 134 IADGQWYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGGN 190
>gi|300698196|ref|YP_003748857.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
gi|299074920|emb|CBJ54489.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
Length = 543
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ G++WRL ++ FLHA + HL +N + L + G +E+I GP YL +Y + +
Sbjct: 222 VQHGEWWRLLSATFLHAGVLHLAINMFGLYATGVAVERIYGPVAYLLIYLGAGL 275
>gi|392955180|ref|ZP_10320725.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
gi|391878845|gb|EIT87420.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
Length = 198
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+LA+ ++VY+ T ++ L I N I +G++WRL T H HL+ N +SL
Sbjct: 21 ILAIQLIVYVLMTFTPLEVELSTTFIGYNEAISQGEYWRLITPLITHIEFPHLLFNSFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAI 219
GP +E++ G ++ YF S I
Sbjct: 81 FIFGPLLERLLGKGLFIISYFGSGI 105
>gi|410458664|ref|ZP_11312422.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
gi|409931259|gb|EKN68245.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
Length = 198
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+LL G N + G++WRL T FLH++ H++ N +SL GP +E++ G ++
Sbjct: 39 QQLLYLGIGSNYDVYNGEYWRLLTPIFLHSSFGHMLFNSFSLAIFGPALERMLGKPIFII 98
Query: 213 VYFSSAIASN 222
Y S + +N
Sbjct: 99 TYLLSGVLAN 108
>gi|269124334|ref|YP_003297704.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
gi|268309292|gb|ACY95666.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
Length = 302
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSL-----IDKGQFWRLATSAFLHAN-- 183
T L+A+NVLVY+AQ ++ + G + + + G+++RL T+AFLH+
Sbjct: 77 TYTLIALNVLVYLAQLSSSRIVYDFAMVGVRFDPYGEMHGVADGEWYRLITAAFLHSQPG 136
Query: 184 -----IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ H++ N ++L IGP +E++ G R+ +Y SA+ +
Sbjct: 137 GGSFGVTHILFNMWALWVIGPQLEQVLGRWRFTSLYLLSALGGS 180
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINS-----LIDKGQFWRLATSAFL 180
R T ILL +NV V+IA A D L L+ GA + +G+++RL T+ FL
Sbjct: 89 RLVTKILLGINVAVFIAVLAVGDGLVQDLELIGGAFTREDLQFIGVAEGEWYRLLTAVFL 148
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H H++ N SL +GP +E G R+L +Y S + +
Sbjct: 149 HQAPMHIIFNMLSLWWLGPPLEAAFGRVRFLALYLLSGLGGS 190
>gi|320528438|ref|ZP_08029600.1| peptidase, S54 family protein [Solobacterium moorei F0204]
gi|320131352|gb|EFW23920.1| peptidase, S54 family protein [Solobacterium moorei F0204]
Length = 266
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 141 NVLVYIAQFATQDKL---LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSI 197
V V+I F + + +L GA + G+FWRL T+ F+H ++ HL +N +L S+
Sbjct: 18 GVWVFIQLFPSDSTITNAILIGAFYKPFVLAGEFWRLLTAGFVHVHLWHLAMNMMALLSL 77
Query: 198 GPTMEKICGPRRYLGVYFSSAIASN 222
G E + G +RYL + S + +
Sbjct: 78 GKIFEPLLGMKRYLMILIPSIVVGS 102
>gi|404260618|ref|ZP_10963899.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
gi|403400926|dbj|GAC02309.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
Length = 241
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLTAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L TS FLH ++ H+ VN SL +G +E G RYL VY + + + +
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAA 115
>gi|374323241|ref|YP_005076370.1| rhomboid family protein [Paenibacillus terrae HPL-003]
gi|357202250|gb|AET60147.1| rhomboid family protein [Paenibacillus terrae HPL-003]
Length = 207
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I +++ L L +GA IN Q WR ++ FLHA HL
Sbjct: 19 TCLILLINIVMFIVLTVHGGSENSLTLIRYGALINEEPFTAQLWRYVSAMFLHAGFDHLF 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +++ P +E++ G RY +Y ++ I N
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYALLYLATGIVGN 112
>gi|134096653|ref|YP_001102314.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909276|emb|CAL99388.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 259
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 136 ILLAVNVLVYIAQ---------------FATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+L+AVNVLV++ FAT A + L+ GQ+WRL TS FL
Sbjct: 36 VLIAVNVLVHVYTSVQAGSGMDNFDSDGFATS-------ALLPILVAGGQWWRLVTSGFL 88
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
H + HL +N +L IG +E + G R+ VYF S + + +
Sbjct: 89 HIGLPHLAMNMIALWVIGRDLELVLGRLRFTAVYFLSLLGGSTA 132
>gi|383320817|ref|YP_005381658.1| hypothetical protein Mtc_2409 [Methanocella conradii HZ254]
gi|379322187|gb|AFD01140.1| putative membrane protein [Methanocella conradii HZ254]
Length = 261
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ I++ + VLV+I Q L L+ + SL+ + W L TS FLHA +AHL N
Sbjct: 74 YAYIIIGITVLVFILQLLLDPWLTGLFDLSMGSLLSRP--WGLVTSMFLHAGLAHLFFNM 131
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L GP +E+ + +L +YF S I +
Sbjct: 132 LALFFFGPLLERRIESKGFLALYFGSGILAG 162
>gi|221057964|ref|XP_002261490.1| rhomboid family protein [Plasmodium knowlesi strain H]
gi|194247495|emb|CAQ40895.1| rhomboid family protein, putative [Plasmodium knowlesi strain H]
Length = 274
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+G NS+ + Q+++L T+ FLH+N+ +L++N Y L +IG +EK G Y+G+ S
Sbjct: 89 YGMSRNSVTNNHQYYKLLTATFLHSNVWNLIINAYYLMNIGIIVEKSYGKTHYMGIMILS 148
Query: 218 AIASN 222
A+ N
Sbjct: 149 ALCGN 153
>gi|83745575|ref|ZP_00942633.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
gi|83727652|gb|EAP74772.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
Length = 569
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 20/102 (19%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
FLHA + HL +N L + G +E+I GP YL +Y + +
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGL 301
>gi|343928757|ref|ZP_08768202.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
gi|343761506|dbj|GAA15128.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
Length = 238
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 2 ATTRLSAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 61
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L TS FLH ++ H+ VN SL +G +E G RYL VY + + + +
Sbjct: 62 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAA 112
>gi|311031134|ref|ZP_07709224.1| hypothetical protein Bm3-1_11396 [Bacillus sp. m3-13]
Length = 237
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N I +G++WRL T FLHA++ H + N SL GP +E++ G +++ Y I +N
Sbjct: 46 NLFIWQGEWWRLVTPIFLHASLTHFLFNSLSLVLFGPAVERMLGKGKFITFYLLGGILAN 105
>gi|422412807|ref|ZP_16489766.1| rhomboid family protein, partial [Listeria innocua FSL S4-378]
gi|313619110|gb|EFR90907.1| rhomboid family protein [Listeria innocua FSL S4-378]
Length = 472
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|156087563|ref|XP_001611188.1| rhomboid family protein [Babesia bovis]
gi|154798442|gb|EDO07620.1| rhomboid family protein [Babesia bovis]
Length = 496
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
KGQ++RL TS FLH + HL+ N SL +IG + GPRR L +Y S + +N
Sbjct: 261 KGQYYRLFTSLFLHNGVVHLLQNIRSLWAIGYEAADLLGPRRMLTIYLVSGLVAN 315
>gi|16800442|ref|NP_470710.1| hypothetical protein lin1374 [Listeria innocua Clip11262]
gi|422415832|ref|ZP_16492789.1| rhomboid family protein [Listeria innocua FSL J1-023]
gi|16413847|emb|CAC96605.1| lin1374 [Listeria innocua Clip11262]
gi|313623901|gb|EFR94013.1| rhomboid family protein [Listeria innocua FSL J1-023]
Length = 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|116872768|ref|YP_849549.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116741646|emb|CAK20770.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|82592705|gb|ABB84521.1| unknown [Myxococcus xanthus]
Length = 536
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 108 TRKNSGHEGTSHL----DTARTNLFIGRQWTNILLAVNVLVYI------AQFATQDKLLL 157
TR + EG L +A G W ++LA VLV I A D LL
Sbjct: 7 TRLSPEEEGQPRLLSIGQSAGGMRLGGAPWLTLILA-TVLVGIHGAARAAGPVGLDTLLR 65
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
WGAK L+ D GQ WRL T+ FLH + HL +N L + G +E++C R Y
Sbjct: 66 WGAKAGPLVVDAGQVWRLVTAHFLHRDFPHLALNVLVLLAAGSGLERLCRRRDY 119
>gi|390630603|ref|ZP_10258582.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
gi|390484160|emb|CCF30930.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
Length = 233
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVY-----IAQFATQDKLLLW--GAKINSLI-DKGQFWRLATSAFLHANIA 185
T+ L+A V+VY IAQ T +L+ GA+ ++ G++WRL T+ FLH +
Sbjct: 15 TSALVAFMVVVYLWEALIAQSFTISSRVLYETGAQFGPIVLHYGEWWRLLTAGFLHVTAS 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ N +L IG +E GP R+L ++ ++ I+ N
Sbjct: 75 HLIFNMITLYFIGRLLELEIGPWRFLILFLTTVISGN 111
>gi|423100417|ref|ZP_17088124.1| peptidase, S54 family [Listeria innocua ATCC 33091]
gi|370793418|gb|EHN61256.1| peptidase, S54 family [Listeria innocua ATCC 33091]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|374604833|ref|ZP_09677783.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
gi|374389541|gb|EHQ60913.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
Length = 199
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ NV ++I +QD + L+ GA + + WRLAT+ FLH+ HL+
Sbjct: 19 TTLLIIANVAMFIVLALNGGSQDNMTLFRFGAVLKMEPYASETWRLATAMFLHSGFQHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
N ++L P ME+I G +Y +Y S + N +
Sbjct: 79 FNMFALFVFAPPMERILGSFKYAVLYLLSGLLGNGA 114
>gi|126663376|ref|ZP_01734374.1| hypothetical protein FBBAL38_08480 [Flavobacteria bacterium BAL38]
gi|126625034|gb|EAZ95724.1| hypothetical protein FBBAL38_08480 [Flavobacteria bacterium BAL38]
Length = 252
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 137 LLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMVNCYS 193
LL +N+L +I F Q LL S D +FW+ T F+H+ ++ H+ N ++
Sbjct: 12 LLIINILFFIGSYFVPQANELLSLHYFES--DGFKFWQPITHMFMHSKYSLMHIFFNMFA 69
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIAS 221
L S G T+EK+ GP+++L YFS I +
Sbjct: 70 LVSFGSTLEKMWGPKKFLFFYFSCGIGA 97
>gi|441509684|ref|ZP_20991598.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
gi|441446200|dbj|GAC49559.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
Length = 230
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVNV+++ + Q + D L G + + + G++WRL T+ FLH +AH
Sbjct: 10 TYALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVAH 69
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+ +N SL +G +E G RYL VYF +
Sbjct: 70 IALNMISLYILGRDLEAALGLGRYLMVYFVA 100
>gi|403727958|ref|ZP_10947871.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
gi|403203710|dbj|GAB92202.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
Length = 254
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 137 LLAVNVLVYIA---QFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+AVNV++++ Q D L + W A + G++WRL T+ FLH ++ H+
Sbjct: 33 LIAVNVVIFVICALQARGVDMLRSQLFVDW-ALYKPWVADGEYWRLLTAGFLHFSVTHIA 91
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
VN SL +G +E G RYLGVY ++ + + +
Sbjct: 92 VNMLSLYILGRDLEIAIGIPRYLGVYLTALLGGSAA 127
>gi|291005693|ref|ZP_06563666.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 308
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 136 ILLAVNVLVYIAQ---------------FATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+L+AVNVLV++ FAT A + L+ GQ+WRL TS FL
Sbjct: 85 VLIAVNVLVHVYTSVQAGSGMDNFDSDGFATS-------ALLPILVAGGQWWRLVTSGFL 137
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
H + HL +N +L IG +E + G R+ VYF S + + +
Sbjct: 138 HIGLPHLAMNMIALWVIGRDLELVLGRLRFTAVYFLSLLGGSTA 181
>gi|207738893|ref|YP_002257286.1| membrane protein [Ralstonia solanacearum IPO1609]
gi|206592264|emb|CAQ59170.1| membrane protein [Ralstonia solanacearum IPO1609]
Length = 543
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 20/102 (19%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 180 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
FLHA + HL +N L + G +E+I GP YL +Y + +
Sbjct: 234 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGL 275
>gi|217964517|ref|YP_002350195.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|386026709|ref|YP_005947485.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
gi|217333787|gb|ACK39581.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|336023290|gb|AEH92427.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|422409553|ref|ZP_16486514.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
gi|313608952|gb|EFR84701.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|352081010|ref|ZP_08951888.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389798976|ref|ZP_10201983.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
gi|351683051|gb|EHA66135.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388444005|gb|EIM00132.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
Length = 205
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
LL NV V+ QF LLL A + W++ TSAF+H + H+M N +L
Sbjct: 12 LLIANVAVFFLQFVAGQFLLLHFALWPLGSGLFEVWQIVTSAFMHGGVTHIMFNMLALYM 71
Query: 197 IGPTMEKICGPRRYLGVYFSSAIASN 222
G T+E+ G R + YF AI ++
Sbjct: 72 FGGTIERTFGAREFTVYYFVCAIVAS 97
>gi|404407774|ref|YP_006690489.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
gi|404241923|emb|CBY63323.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
Length = 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFLHAN 183
T IL+ + Y+ Q A D L+ A + D +GQ +RL TS FLH +
Sbjct: 85 TKILIGACLAAYLVQMAVGDSFTDNFSLIGQAYVPHFGDVEGVAEGQSYRLLTSMFLHGS 144
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ HL+ N SL +G +E G RYL +YF S +A +
Sbjct: 145 VIHLLFNMLSLWWLGGPLEAALGRARYLALYFVSGLAGS 183
>gi|404280891|ref|YP_006681789.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404286756|ref|YP_006693342.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749679|ref|YP_006673145.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|405755466|ref|YP_006678930.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|417317486|ref|ZP_12104103.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|328475056|gb|EGF45844.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|404218879|emb|CBY70243.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|404224666|emb|CBY76028.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|404227526|emb|CBY48931.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404245685|emb|CBY03910.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|290893553|ref|ZP_06556536.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
gi|290556898|gb|EFD90429.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|226223938|ref|YP_002758045.1| hypothetical protein Lm4b_01345 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732075|ref|YP_006205571.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|405752554|ref|YP_006676019.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406704108|ref|YP_006754462.1| rhomboid family protein [Listeria monocytogenes L312]
gi|225876400|emb|CAS05109.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384390833|gb|AFH79903.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|404221754|emb|CBY73117.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406361138|emb|CBY67411.1| rhomboid family protein [Listeria monocytogenes L312]
Length = 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|312970732|ref|ZP_07784913.1| rhomboid family protein [Escherichia coli 1827-70]
gi|310337381|gb|EFQ02519.1| rhomboid family protein [Escherichia coli 1827-70]
Length = 231
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH++++HL++N ++ +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMFAFLVVGAVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S +
Sbjct: 68 IIWLFSGV 75
>gi|254824604|ref|ZP_05229605.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
gi|255520229|ref|ZP_05387466.1| rhomboid family protein [Listeria monocytogenes FSL J1-175]
gi|293593842|gb|EFG01603.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|46907563|ref|YP_013952.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424714211|ref|YP_007014926.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
gi|46880831|gb|AAT04129.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424013395|emb|CCO63935.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|422809417|ref|ZP_16857828.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
gi|378753031|gb|EHY63616.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|386008108|ref|YP_005926386.1| rhomboid family protein [Listeria monocytogenes L99]
gi|307570918|emb|CAR84097.1| rhomboid family protein [Listeria monocytogenes L99]
Length = 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|47093617|ref|ZP_00231374.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|254932348|ref|ZP_05265707.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|258611754|ref|ZP_05241962.2| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|300765423|ref|ZP_07075405.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|424823099|ref|ZP_18248112.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
gi|47017993|gb|EAL08769.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|258605928|gb|EEW18536.1| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|293583904|gb|EFF95936.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|300513860|gb|EFK40925.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|332311779|gb|EGJ24874.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
Length = 518
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|256374174|ref|YP_003097834.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255918477|gb|ACU33988.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length = 298
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKI 162
TR+ EG +H T R L + L + Y+ T Q + GA +
Sbjct: 65 TRQARTVEGATHASTGRRLLVVPVLIVVNLALFALTAYLGGGVTDRDVFQSDVTQEGALV 124
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL TS FLH + H+ +N SL +G +E + G R+L VY S + +
Sbjct: 125 PYFVALGEWWRLVTSGFLHLGVTHIGLNMASLYILGRDLEPVLGRARFLAVYLLSLLGGS 184
Query: 223 NS 224
S
Sbjct: 185 AS 186
>gi|297584599|ref|YP_003700379.1| rhomboid protease [Bacillus selenitireducens MLS10]
gi|297143056|gb|ADH99813.1| Rhomboid protease [Bacillus selenitireducens MLS10]
Length = 526
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK + I G++WR ++ F+H HL +N +L +G +E+I G R+ G+Y
Sbjct: 219 LVEFGAKYDPAILDGEWWRFVSAMFIHIGPLHLFMNSLALFFLGAAVERIFGTGRFFGIY 278
Query: 215 FSSAI 219
F + +
Sbjct: 279 FLAGL 283
>gi|408370453|ref|ZP_11168230.1| peptidase S54, rhomboid domain-containing protein [Galbibacter sp.
ck-I2-15]
gi|407744211|gb|EKF55781.1| peptidase S54, rhomboid domain-containing protein [Galbibacter sp.
ck-I2-15]
Length = 247
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
+L VNVL +IA D++ W A + W++ T F+H H++ N Y+L +
Sbjct: 11 ILIVNVLFFIATQLLGDQMYQWFALWFPENENFYLWQVVTHMFMHGGFMHILFNMYALWA 70
Query: 197 IGPTMEKICGPRRYLGVYFSSAIAS 221
G +E++ G +++ YFSS + +
Sbjct: 71 FGTPLEQMWGRNKFIFFYFSSGLGA 95
>gi|403237491|ref|ZP_10916077.1| rhomboid protein membrane-associated serine peptidase [Bacillus sp.
10403023]
Length = 515
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 133 WTNILLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+ ++++ + LL +GAK N I G++WR T LH HL
Sbjct: 183 FTYILIAIQLIMFAVLELYGGSTNTETLLKYGAKENFRILNGEWWRFFTPMILHIGFIHL 242
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVY 214
++N ++L +G +E++ G R+L +Y
Sbjct: 243 LMNTFALYYLGTEVERLYGKSRFLMIY 269
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +GP +E G R++ +Y SA+ +
Sbjct: 126 MLALYFVGPPLEAALGRARFITLYLVSALGGS 157
>gi|419207719|ref|ZP_13750845.1| rhomboid family protein [Escherichia coli DEC8C]
gi|419259379|ref|ZP_13801833.1| rhomboid family protein [Escherichia coli DEC10B]
gi|378062240|gb|EHW24418.1| rhomboid family protein [Escherichia coli DEC8C]
gi|378115703|gb|EHW77238.1| rhomboid family protein [Escherichia coli DEC10B]
Length = 265
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|443626016|ref|ZP_21110448.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
gi|443340440|gb|ELS54650.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
Length = 313
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFL 180
R T +L+ + + V++AQ + D L+ A + L D +GQ++RL TS FL
Sbjct: 100 RLVTKVLIGICLAVFLAQLSMGDPFTDRFDLMGRAYVPELGDVEGVAEGQWYRLLTSMFL 159
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H + H++ N SL IG +E G RY+ +Y S +A +
Sbjct: 160 HGSYIHILFNMLSLWWIGGPLEAALGRVRYIALYLVSGLAGS 201
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 122 TARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-----IDKGQF 171
TA NL T +L+ +N+ +++ Q + D LL A + +GQ+
Sbjct: 86 TADPNLV-----TKVLIGLNLALFLVQLSLGDDFTRRFELLGRASYTGFSPLEGVAEGQY 140
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+RL T+ FLH AH++ N SL +G +EK G R+L +Y S +A +
Sbjct: 141 YRLLTAMFLHGGYAHIIFNMLSLWWLGAPLEKALGRARFLALYLVSGLAGS 191
>gi|330997596|ref|ZP_08321442.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
gi|329570307|gb|EGG52042.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
Length = 478
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 136 ILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL N+LV+ T LL WGA L G +WR+ T F+H+ + HL
Sbjct: 63 LLLGCNILVFFVMCLTGVGVLEPDNISLLHWGANFGPLTLTGDYWRVWTCNFVHSGLIHL 122
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++N Y+L +G +E + G R + VY + + S+
Sbjct: 123 IMNVYALLFVGLFLEPMLGSLRVVMVYSLAGLYSS 157
>gi|422022178|ref|ZP_16368686.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
gi|414096671|gb|EKT58327.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
Length = 287
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T+ L+ +N+++Y Q FA+ ++ LLL+GA + L G +WR S LH+N H
Sbjct: 27 TSGLVLLNIVIYFYQLHFASPLDSRENNLLLFGANVYQLSLTGDWWRYPISMLLHSNGVH 86
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
L N +L IG E+ G + L +YF S I +
Sbjct: 87 LAFNSLALFVIGIECERNYGKSKLLAIYFISGIGA 121
>gi|390961805|ref|YP_006425639.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
gi|390520113|gb|AFL95845.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
Length = 203
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 137 LLAVNVLVYIAQ-------FATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L +NV VYI + F+ D L G +++ G +W+L T+ F+H I H+
Sbjct: 17 LFLINVAVYIVEAILSGNPFSISIDVLARLGQWNYAVLSYGWWWQLVTAMFVHVGILHIG 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y L +G +E I GP+R + VY S +A N
Sbjct: 77 FNMYFLLMMGRQLEGIIGPKRLVMVYLVSGLAGN 110
>gi|357416861|ref|YP_004929881.1| rhomboid family protein [Pseudoxanthomonas spadix BD-a59]
gi|355334439|gb|AER55840.1| rhomboid family protein [Pseudoxanthomonas spadix BD-a59]
Length = 230
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD----KLLLWGAKINSLIDKGQF--WRLATSAFLHANIAHL 187
T LL NV +++ Q D +LLLW ++ F W+L ++ F+HA H+
Sbjct: 9 TQALLIANVAMFLLQMVLPDALMARLLLWPVGAGQVLPGAGFLPWQLVSAGFMHATFGHI 68
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L G +E + G RR+ Y S + +N
Sbjct: 69 FFNMLALWMFGSPLEAVWGARRFTTYYLVSLVGAN 103
>gi|415789921|ref|ZP_11494784.1| rhomboid family protein [Escherichia coli EPECa14]
gi|419225383|ref|ZP_13768270.1| rhomboid family protein [Escherichia coli DEC9A]
gi|419231165|ref|ZP_13773956.1| rhomboid family protein [Escherichia coli DEC9B]
gi|419236550|ref|ZP_13779299.1| rhomboid family protein [Escherichia coli DEC9C]
gi|419247573|ref|ZP_13790185.1| rhomboid family protein [Escherichia coli DEC9E]
gi|419253326|ref|ZP_13795873.1| rhomboid family protein [Escherichia coli DEC10A]
gi|419265249|ref|ZP_13807635.1| rhomboid family protein [Escherichia coli DEC10C]
gi|419271051|ref|ZP_13813381.1| rhomboid family protein [Escherichia coli DEC10D]
gi|419282579|ref|ZP_13824796.1| rhomboid family protein [Escherichia coli DEC10F]
gi|323153618|gb|EFZ39866.1| rhomboid family protein [Escherichia coli EPECa14]
gi|378080971|gb|EHW42927.1| rhomboid family protein [Escherichia coli DEC9A]
gi|378082159|gb|EHW44105.1| rhomboid family protein [Escherichia coli DEC9B]
gi|378089773|gb|EHW51614.1| rhomboid family protein [Escherichia coli DEC9C]
gi|378101466|gb|EHW63152.1| rhomboid family protein [Escherichia coli DEC9E]
gi|378107006|gb|EHW68632.1| rhomboid family protein [Escherichia coli DEC10A]
gi|378118301|gb|EHW79804.1| rhomboid family protein [Escherichia coli DEC10C]
gi|378121367|gb|EHW82821.1| rhomboid family protein [Escherichia coli DEC10D]
gi|378138938|gb|EHX00188.1| rhomboid family protein [Escherichia coli DEC10F]
Length = 265
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|417590351|ref|ZP_12241068.1| rhomboid family protein [Escherichia coli 2534-86]
gi|419195770|ref|ZP_13739176.1| rhomboid family protein [Escherichia coli DEC8A]
gi|419201669|ref|ZP_13744896.1| rhomboid family protein [Escherichia coli DEC8B]
gi|419219920|ref|ZP_13762876.1| rhomboid family protein [Escherichia coli DEC8E]
gi|345344882|gb|EGW77241.1| rhomboid family protein [Escherichia coli 2534-86]
gi|378052404|gb|EHW14712.1| rhomboid family protein [Escherichia coli DEC8A]
gi|378056577|gb|EHW18817.1| rhomboid family protein [Escherichia coli DEC8B]
gi|378072279|gb|EHW34341.1| rhomboid family protein [Escherichia coli DEC8E]
Length = 265
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|419321379|ref|ZP_13863118.1| rhomboid family protein [Escherichia coli DEC12B]
gi|378174256|gb|EHX35083.1| rhomboid family protein [Escherichia coli DEC12B]
Length = 265
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|419384810|ref|ZP_13925710.1| rhomboid family protein [Escherichia coli DEC14D]
gi|378236675|gb|EHX96715.1| rhomboid family protein [Escherichia coli DEC14D]
Length = 265
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|293418768|ref|ZP_06661203.1| conserved hypothetical protein [Escherichia coli B088]
gi|418042746|ref|ZP_12680936.1| hypothetical protein ECW26_31660 [Escherichia coli W26]
gi|291325296|gb|EFE64711.1| conserved hypothetical protein [Escherichia coli B088]
gi|383474411|gb|EID66400.1| hypothetical protein ECW26_31660 [Escherichia coli W26]
Length = 265
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|225869314|ref|YP_002745262.1| rhomboid family membrane protein [Streptococcus equi subsp.
zooepidemicus]
gi|225702590|emb|CAX00602.1| putative rhomboid family membrane protein [Streptococcus equi
subsp. zooepidemicus]
Length = 227
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDK---GQFWRLATSAFLH 181
T F+G T ++ + LVY QFAT ++ +N L+ + GQ WRL T +H
Sbjct: 11 TFFFLGL--TGLIFLIMQLVY-GQFATHPYAVVIFGGMNGLVVRAMPGQLWRLVTPIVVH 67
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H +N +L +G E I G R++L +Y S I N
Sbjct: 68 IGFGHFFINALTLYFVGRLAESIWGSRQFLLLYVCSGIMGN 108
>gi|223935890|ref|ZP_03627805.1| Rhomboid family protein [bacterium Ellin514]
gi|223895491|gb|EEF61937.1| Rhomboid family protein [bacterium Ellin514]
Length = 282
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++ + Q+ RL TSAFLHAN HL N + L + G +E I GP +L +YF+ I +
Sbjct: 40 ILAEKQYHRLVTSAFLHANWRHLFFNMFGLYAFGRLIESIHGPLMFLSIYFAGIIGGD 97
>gi|334880686|emb|CCB81452.1| integral membrane protein [Lactobacillus pentosus MP-10]
gi|339636895|emb|CCC15711.1| integral membrane protein [Lactobacillus pentosus IG1]
Length = 227
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 15 TQIILGITVAVFLIEWLMGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + +G +E + G R L +Y I+ N
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGN 107
>gi|317504626|ref|ZP_07962593.1| rhomboid family protein [Prevotella salivae DSM 15606]
gi|315664247|gb|EFV03947.1| rhomboid family protein [Prevotella salivae DSM 15606]
Length = 319
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKIN---------SLIDKGQFWRLATSAFLHANI 184
T LL +NV+ +I + Q + G I+ L QF++L T F+HAN+
Sbjct: 8 TKNLLLINVIAFILMWLLQRVSFMGGTPIDLNNIFGLHFFLATDFQFYQLFTYMFMHANL 67
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
H+ N ++L G +E + GPRR+L Y I +
Sbjct: 68 EHIFFNMFALWMFGMVVEHVWGPRRFLFYYIICGIGA 104
>gi|417230315|ref|ZP_12031901.1| peptidase, S54 family [Escherichia coli 5.0959]
gi|386206805|gb|EII11311.1| peptidase, S54 family [Escherichia coli 5.0959]
Length = 625
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + +L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAALTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|404212656|ref|YP_006666831.1| putative membrane protein [Gordonia sp. KTR9]
gi|403643455|gb|AFR46695.1| putative membrane protein [Gordonia sp. KTR9]
Length = 237
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+LV+ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLVFALCVLQSGVGDPGGASIFSAGDLLKSDVASGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+ VN SL +G +E G RYL VY
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVY 101
>gi|120435155|ref|YP_860841.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
gi|117577305|emb|CAL65774.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
Length = 249
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 134 TNILLAVNVLVYIAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
+LL +NV+ +I D LW K + +FW++ T F+H H++
Sbjct: 8 VKVLLIINVIFFIGSQLIGDVAYEYFALWFIKNPNF----EFWQIITHMFMHGGFMHILF 63
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N Y+L + G +E++ G +R++ YFS+ I +
Sbjct: 64 NMYALWAFGSPIEQMLGQKRFVFFYFSAGIGA 95
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +GP +E G R++ +Y SA+ +
Sbjct: 126 MLALYFVGPPLEAALGRARFVTLYLVSALGGS 157
>gi|422804629|ref|ZP_16853061.1| rhomboid family protein [Escherichia fergusonii B253]
gi|324114777|gb|EGC08745.1| rhomboid family protein [Escherichia fergusonii B253]
Length = 591
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH++ +HL++N ++L +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMFALLVVGTVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S I
Sbjct: 68 IIWLFSGI 75
>gi|309805213|ref|ZP_07699265.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
gi|308165447|gb|EFO67678.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
Length = 232
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGN 113
>gi|331667010|ref|ZP_08367884.1| outer membrane protein [Escherichia coli TA271]
gi|331066234|gb|EGI38118.1| outer membrane protein [Escherichia coli TA271]
Length = 122
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH++ +HL++N ++L +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMFALLVVGAVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S +
Sbjct: 68 IIWLFSGV 75
>gi|108762819|ref|YP_633729.1| S54 family peptidase [Myxococcus xanthus DK 1622]
gi|108466699|gb|ABF91884.1| peptidase, S54 (rhomboid) family [Myxococcus xanthus DK 1622]
Length = 508
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 130 GRQWTNILLAVNVLVYI------AQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHA 182
G W ++LA VLV I A D LL WGAK L+ D GQ WRL T+ FLH
Sbjct: 5 GAPWLTLILA-TVLVGIHGAARAAGPVGLDTLLRWGAKAGPLVVDAGQVWRLVTAHFLHR 63
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+ HL +N L + G +E++C R Y
Sbjct: 64 DFPHLALNVLVLLAAGSGLERLCRRRDY 91
>gi|325912656|ref|ZP_08175039.1| peptidase, S54 family [Lactobacillus iners UPII 60-B]
gi|325478077|gb|EGC81206.1| peptidase, S54 family [Lactobacillus iners UPII 60-B]
Length = 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGN 113
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|168053660|ref|XP_001779253.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669352|gb|EDQ55941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 137 LLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+A+NV VY+ A+ ++ L+GAK+N LI G++WRL T FLH+ HL
Sbjct: 1 LVALNVAVYLFGLASPQEVPGMVDASLPYLYGAKVNELIVNGEWWRLITPTFLHSGFLHL 60
Query: 188 MVNCYSLNSIGPTMEKICG 206
++ ++L GP + G
Sbjct: 61 GLSTWALLEFGPAVGSAFG 79
>gi|326803846|ref|YP_004321664.1| S8/S53 family peptidase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650087|gb|AEA00270.1| peptidase, S54 family [Aerococcus urinae ACS-120-V-Col10a]
Length = 221
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
T LLA+ +++Y+ + LLL+GAK N+LI GQ+WRL T F+H +HL
Sbjct: 8 TYTLLAIQIIIYLLMEFTGSSLSSSTLLLFGAKENALIAIYGQYWRLLTPIFVHIGFSHL 67
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ N +L +G +E I G R+L +Y S I N
Sbjct: 68 LFNSITLWYLGSEVEGIIGSWRFLFIYLYSGIMGN 102
>gi|325912121|ref|ZP_08174519.1| peptidase, S54 family [Lactobacillus iners UPII 143-D]
gi|325476071|gb|EGC79239.1| peptidase, S54 family [Lactobacillus iners UPII 143-D]
Length = 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGN 113
>gi|338731999|ref|YP_004670472.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
gi|336481382|emb|CCB87981.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
Length = 336
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 154 KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
+L WG + + G++WRL TS F+H + HL+VN Y+L S+G +E + G +
Sbjct: 31 DILHWGGNSSYEVLSGEWWRLLTSLFIHIGLIHLLVNMYALFSMGRFLESVIGSYLFFVS 90
Query: 214 YFSSAIASN 222
Y S + S
Sbjct: 91 YLVSGLISG 99
>gi|170702191|ref|ZP_02893097.1| Rhomboid family protein [Burkholderia ambifaria IOP40-10]
gi|170132900|gb|EDT01322.1| Rhomboid family protein [Burkholderia ambifaria IOP40-10]
Length = 640
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 131 RQWTNILLAV-NVLVYI-----AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHA 182
R W +LLAV N ++++ A + + LL WGA GQ WRL +SAFLH
Sbjct: 8 RPWLTLLLAVVNTVIFMLMWRQASYGSLSNALLLDWGANFAPYTLTGQPWRLLSSAFLHG 67
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+ HL +N Y L +G +E+ G R+
Sbjct: 68 SWIHLALNMYMLVVLGTVLERAGGTLRF 95
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|259500554|ref|ZP_05743456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302191244|ref|ZP_07267498.1| membrane-associated serine protease [Lactobacillus iners AB-1]
gi|259167938|gb|EEW52433.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
Length = 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGN 113
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 192
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|312871798|ref|ZP_07731886.1| peptidase, S54 family [Lactobacillus iners LEAF 3008A-a]
gi|312875588|ref|ZP_07735589.1| peptidase, S54 family [Lactobacillus iners LEAF 2053A-b]
gi|311088842|gb|EFQ47285.1| peptidase, S54 family [Lactobacillus iners LEAF 2053A-b]
gi|311092740|gb|EFQ51096.1| peptidase, S54 family [Lactobacillus iners LEAF 3008A-a]
Length = 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGN 113
>gi|311030831|ref|ZP_07708921.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
sp. m3-13]
Length = 503
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N I +G++WR T LH HL++N ++ +G +E+I G R+L
Sbjct: 204 ETLVKYGAKYNPAILEGEWWRFFTPIVLHIGFLHLLLNTMAIFYLGSAVERIYGNIRFLA 263
Query: 213 VY----FSSAIAS 221
+Y F+ ++AS
Sbjct: 264 IYLFAGFTGSLAS 276
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|424865430|ref|ZP_18289295.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86B]
gi|400758698|gb|EJP72900.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86B]
Length = 206
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ I+ + WRL T AF+H + H+ NC + +G T+E+I G YLG++ ++I SN
Sbjct: 54 TFIENSELWRLVTPAFIHFSFMHIAFNCLWVYVLGKTIEQIHGAIIYLGLFLFTSILSN 112
>gi|375098380|ref|ZP_09744643.1| putative membrane protein [Saccharomonospora cyanea NA-134]
gi|374659112|gb|EHR58990.1| putative membrane protein [Saccharomonospora cyanea NA-134]
Length = 333
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F +D + +LW ++ L D ++WRL TS FLH
Sbjct: 113 LLIAVNVIVYALTVFQARDVMSNHNSPVFNDGVLW-PEVVVLFD--EWWRLLTSGFLHYG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ HL +N +L +G +E + G R+L VYF S A +
Sbjct: 170 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGGAA 210
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 236
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 236
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|262281800|ref|ZP_06059569.1| peptidase [Streptococcus sp. 2_1_36FAA]
gi|262262254|gb|EEY80951.1| peptidase [Streptococcus sp. 2_1_36FAA]
Length = 227
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG--QFWRLATSAFLHANIAHLMVNC 191
T+++ A+ L Y Q+++ + L +GA I + +FWR+ + F+H + H +VN
Sbjct: 19 TSLVFALMFLFYGFQYSSTEALYRFGAVHGYTIQEMPIEFWRVFAAIFVHIGLEHFVVNM 78
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +G +E I GP ++L +Y S + N
Sbjct: 79 LTLYFLGRQIEDIFGPWKFLMLYLMSGVMGN 109
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|312872929|ref|ZP_07732989.1| peptidase, S54 family [Lactobacillus iners LEAF 2062A-h1]
gi|311091451|gb|EFQ49835.1| peptidase, S54 family [Lactobacillus iners LEAF 2062A-h1]
Length = 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGN 113
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|398343437|ref|ZP_10528140.1| intramembrane serine protease [Leptospira inadai serovar Lyme str.
10]
Length = 199
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
+G+++ L TSAFLH++I HLM N +L GP +E G ++G+Y ++ +A++
Sbjct: 38 QGRYYTLITSAFLHSDIFHLMFNMITLYFFGPAVEYTIGGLGFVGIYLAAILAASG 93
>gi|339452024|ref|ZP_08655394.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc lactis KCTC 3528]
Length = 124
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG I ID Q+WRL T FLHA H++ N +L IGP E G R++LG+Y
Sbjct: 50 WGPAIA--IDH-QYWRLLTPIFLHAGWLHIITNMLTLWFIGPLAEAAFGHRKFLGLYLFG 106
Query: 218 AIASN 222
+ N
Sbjct: 107 GVVGN 111
>gi|325285172|ref|YP_004260962.1| peptidase S54, rhomboid domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324320626|gb|ADY28091.1| Peptidase S54, rhomboid domain protein [Cellulophaga lytica DSM
7489]
Length = 247
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
L+ +NV+ ++A D++ W + + Q W+L + F+H H+ N Y+L +
Sbjct: 11 LIIINVIFFLATQTLGDQMYQWFSLWFPENENFQLWQLVSHMFMHGGFMHIAFNMYALYA 70
Query: 197 IGPTMEKICGPRRYLGVYFSSAIAS 221
G +E++ G ++L YFS+ I +
Sbjct: 71 FGTPLEQMWGKNKFLFFYFSAGIGA 95
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|325677503|ref|ZP_08157167.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
gi|325551750|gb|EGD21448.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
Length = 300
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 19/105 (18%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------------LLLWGAKINSLIDKGQFWRLATSAF 179
T +L+AVNV ++ A A Q + +LWG + + G+F R+ TS F
Sbjct: 86 TYVLIAVNVAIF-AVTAVQSRSVMDNHVASPLFLDWVLWGPAVAA----GEFSRIVTSGF 140
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
LH + HL VN ++L IG E + G RY VY + + + S
Sbjct: 141 LHIGLMHLAVNMFALYVIGRDTEMVLGRARYFAVYVIALLGGSAS 185
>gi|183598259|ref|ZP_02959752.1| hypothetical protein PROSTU_01644 [Providencia stuartii ATCC 25827]
gi|386744560|ref|YP_006217739.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
gi|1168254|sp|P46116.1|AARA_PROST RecName: Full=Rhomboid protease AarA; AltName: Full=Intramembrane
serine protease
gi|453686|gb|AAA61597.1| 2'-N-acetyltransferase [Providencia stuartii]
gi|188020429|gb|EDU58469.1| rhomboid protease AarA [Providencia stuartii ATCC 25827]
gi|384481253|gb|AFH95048.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
Length = 281
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 129 IGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
I T +LL + V Y FA+ + L+L+GA I L G +WR S LH+N
Sbjct: 21 IALTLTLVLLNIAVYFYQIVFASPLDSRESNLILFGANIYQLSLTGDWWRYPISMMLHSN 80
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
HL NC +L IG E+ G + L +Y S I +
Sbjct: 81 GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGA 118
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|315653611|ref|ZP_07906531.1| membrane-associated serine protease [Lactobacillus iners ATCC
55195]
gi|315488973|gb|EFU78615.1| membrane-associated serine protease [Lactobacillus iners ATCC
55195]
Length = 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGN 113
>gi|73540854|ref|YP_295374.1| rhomboid-like protein [Ralstonia eutropha JMP134]
gi|72118267|gb|AAZ60530.1| Rhomboid-like protein [Ralstonia eutropha JMP134]
Length = 155
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF----WRLATSAFLHANIA 185
T +L+ +N++ + + AT L LW I + G+ W+L T FLHAN+A
Sbjct: 14 TTLLILLNIVAFSGEVATDGALAQQFALW-PPILGMPADGEVGFAPWQLLTYGFLHANLA 72
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL N L G ++E GP R L VY +S +++
Sbjct: 73 HLAFNMLGLWMFGRSVEASLGPGRMLAVYLASLVSAG 109
>gi|384563997|ref|ZP_10011101.1| putative membrane protein [Saccharomonospora glauca K62]
gi|384519851|gb|EIE97046.1| putative membrane protein [Saccharomonospora glauca K62]
Length = 330
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F D + +LW + LID ++WRL TS FLH
Sbjct: 112 LLIAVNVVVYALTAFQAGDVMNNYLSPVFADGVLWPEAV-VLID--EWWRLLTSGFLHYG 168
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ HL +N +L +G +E + G R+L VYF S A
Sbjct: 169 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAG 206
>gi|392948666|ref|ZP_10314270.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
gi|392436103|gb|EIW14023.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
Length = 218
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 6 TQIILGITVAVFLIEWLIGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 65
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + +G +E + G R L +Y I+ N
Sbjct: 66 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGN 98
>gi|377562581|ref|ZP_09791962.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
gi|377520256|dbj|GAB37127.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
Length = 212
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
G + + + G++WRL T+ FLH +AH+ +N SL +G +E G RYL VYF
Sbjct: 24 GDLVRAYVADGEYWRLLTAGFLHFTVAHIALNMISLYILGRDLEAALGLGRYLMVYF 80
>gi|157150215|ref|YP_001449482.1| hypothetical protein SGO_0161 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075009|gb|ABV09692.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 227
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG--QFWRLATSAFLHANIAHLMVNC 191
T+++ A+ L Y Q+++ + L +GA I + +FWR+ + F+H + H +VN
Sbjct: 19 TSLVFALMFLFYGFQYSSTEALSYFGAVRGYTIQETPMEFWRVFAAIFVHIGLEHFVVNM 78
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+L +G +E I GP ++L +Y S + N
Sbjct: 79 LTLYFLGRQIEDIFGPWKFLLLYLMSGVMGN 109
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|269217805|ref|ZP_06161659.1| rhomboid family protein [Actinomyces sp. oral taxon 848 str. F0332]
gi|269212740|gb|EEZ79080.1| rhomboid family protein [Actinomyces sp. oral taxon 848 str. F0332]
Length = 205
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+R SAF+H N HL++N Y L G +E + G RYLG+Y SA+A N +
Sbjct: 36 YRFLASAFVHVNFWHLLLNMYVLWVFGSVLEPVIGHARYLGIYLLSAVAGNAA 88
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E + G + L +Y + I N
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGN 253
>gi|302531387|ref|ZP_07283729.1| predicted protein [Streptomyces sp. AA4]
gi|302440282|gb|EFL12098.1| predicted protein [Streptomyces sp. AA4]
Length = 320
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGA-KINSL--------IDKGQFWRLATSAFLHANI 184
T L+AVNV +++ L GA +I L + G++WR+ TS FLH
Sbjct: 88 TATLIAVNVAIFLITVVQAKSLFDNGAARIEMLGELWTYPALGGGEWWRIFTSGFLHYGP 147
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
H+ N +SL +G +E++ G R+L +YF S ++ +
Sbjct: 148 IHIAANAFSLWMMGRALEQVFGKSRFLALYFVSMFGASTA 187
>gi|195977362|ref|YP_002122606.1| hypothetical protein Sez_0215 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974067|gb|ACG61593.1| integral membrane protein (Rhomboid family) [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 227
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDK---GQFWRLATSAFLH 181
T F+G T ++ + LVY QFAT ++ +N L+ + GQ WRL T +H
Sbjct: 11 TLFFLGL--TGLVFLIMQLVY-GQFATHPYAVVIFGGMNGLVVRAMPGQLWRLVTPIVVH 67
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H +N +L +G E I G R++L +Y S I N
Sbjct: 68 IGFGHFFINALTLYFVGRLAESIWGSRQFLLLYVCSGIMGN 108
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G ++SL G+++R T FLHA++ H+ N +L +GP +EK+ G ++L
Sbjct: 45 QSLVLLGGGVDSLFMSGEWYRAFTPIFLHASLMHIFSNMLTLVIVGPFVEKLFGKGKFLL 104
Query: 213 VYFSSAIASN 222
+Y + + N
Sbjct: 105 IYLITGVWGN 114
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|317500904|ref|ZP_07959115.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089196|ref|ZP_08338098.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439355|ref|ZP_08618969.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897702|gb|EFV19762.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405748|gb|EGG85277.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016163|gb|EGN45955.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 200
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHL 187
T +L+ +NV V++ D +L GA I +GQ ++R+ T FLH I HL
Sbjct: 10 TTVLIVINVAVFLILSMLGDTEDAAFMLQHGAMYEPFITEGQEYYRIFTCMFLHFGITHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
M N L ++G +E G R++ +YF S I N
Sbjct: 70 MNNMVMLGALGWNLELEIGKLRFIIIYFLSGIGGN 104
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 192
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
T L+A N+LV++ L WGA G++WRL T+ FLH
Sbjct: 25 TKCLIAANLLVFVLMLFNGAGFWHSPNNVQLQLAWGANFGPATQDGEWWRLFTALFLHFG 84
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL +N + G +E++ G RYL +Y S + N
Sbjct: 85 AVHLALNMIAFWDGGQLVERMYGHWRYLVIYLVSGLVGN 123
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 253
>gi|47095921|ref|ZP_00233524.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912011|ref|ZP_05262023.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|254936338|ref|ZP_05268035.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|258611432|ref|ZP_05232285.2| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|386043648|ref|YP_005962453.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|386046989|ref|YP_005965321.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|386050313|ref|YP_005968304.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|386053590|ref|YP_005971148.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
gi|47015667|gb|EAL06597.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258599975|gb|EEW13300.1| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|258608928|gb|EEW21536.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|293589976|gb|EFF98310.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|345533980|gb|AEO03421.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|345536882|gb|AEO06322.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|346424159|gb|AEO25684.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|346646241|gb|AEO38866.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
Length = 518
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASN 222
I N
Sbjct: 277 LLGGICGN 284
>gi|386335464|ref|YP_006031634.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
gi|334197914|gb|AEG71098.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
Length = 569
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFNLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
FLHA + HL +N L + G +E+I GP YL Y + +
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLTYLGAGL 301
>gi|315658175|ref|ZP_07911047.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
gi|315496504|gb|EFU84827.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
Length = 489
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 166 LITINIVIWLSMILLLNRFSNIKLLEMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 225
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I GP + L +Y S + N
Sbjct: 226 LSLFIFGKIVEAIIGPMKMLILYIISGLFGN 256
>gi|260866804|ref|YP_003233206.1| rhomboid family protein [Escherichia coli O111:H- str. 11128]
gi|417193167|ref|ZP_12015014.1| peptidase, S54 family [Escherichia coli 4.0522]
gi|417208995|ref|ZP_12020615.1| peptidase, S54 family [Escherichia coli JB1-95]
gi|420087782|ref|ZP_14599719.1| rhomboid family protein [Escherichia coli O111:H8 str. CVM9602]
gi|424768230|ref|ZP_18195518.1| rhomboid family protein [Escherichia coli O111:H8 str. CFSAN001632]
gi|257763160|dbj|BAI34655.1| rhomboid family protein [Escherichia coli O111:H- str. 11128]
gi|386190348|gb|EIH79096.1| peptidase, S54 family [Escherichia coli 4.0522]
gi|386196522|gb|EIH90744.1| peptidase, S54 family [Escherichia coli JB1-95]
gi|394391882|gb|EJE68707.1| rhomboid family protein [Escherichia coli O111:H8 str. CVM9602]
gi|421946535|gb|EKU03659.1| rhomboid family protein [Escherichia coli O111:H8 str. CFSAN001632]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|404413413|ref|YP_006699000.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
gi|404239112|emb|CBY60513.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
Length = 512
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 133 WTN-ILLAVNVLV---YIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
W N I++A+N ++ Y + T D ++ A + I G + W L T+ FLH ++ HL
Sbjct: 152 WCNWIIIALNCIIFSLYAFSYETTDWVIEHLAMTPADILAGRELWTLVTATFLHGDLMHL 211
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N Y L +G +E G ++YL +YF IA++
Sbjct: 212 AGNMYFLYVVGDNIEDAVGHKKYLALYFFCGIAAS 246
>gi|305662826|ref|YP_003859114.1| rhomboid family protein [Ignisphaera aggregans DSM 17230]
gi|304377395|gb|ADM27234.1| Rhomboid family protein [Ignisphaera aggregans DSM 17230]
Length = 452
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 134 TNILLAVNVLVYIAQ----FATQ---DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+A N+ VYI F TQ D + + L + Q++R+ TS FLH +I H
Sbjct: 15 TYILIATNIAVYIISSYQNFLTQISDDWVTRYAFVPIMLQEPMQWYRIFTSMFLHGDILH 74
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ N + L G +E G RYL +YF S I++
Sbjct: 75 IFFNMWFLYMFGKEVELSLGITRYLAIYFLSGISAT 110
>gi|193063361|ref|ZP_03044451.1| peptidase, S54 (rhomboid) family [Escherichia coli E22]
gi|192930945|gb|EDV83549.1| peptidase, S54 (rhomboid) family [Escherichia coli E22]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|16803377|ref|NP_464862.1| hypothetical protein lmo1337 [Listeria monocytogenes EGD-e]
gi|284801722|ref|YP_003413587.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284994864|ref|YP_003416632.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404283828|ref|YP_006684725.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404410635|ref|YP_006696223.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|405758384|ref|YP_006687660.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|16410753|emb|CAC99415.1| lmo1337 [Listeria monocytogenes EGD-e]
gi|284057284|gb|ADB68225.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284060331|gb|ADB71270.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404230461|emb|CBY51865.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|404233330|emb|CBY54733.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404236266|emb|CBY57668.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|441471011|emb|CCQ20766.1| Rhomboid protease gluP [Listeria monocytogenes]
gi|441474138|emb|CCQ23892.1| Rhomboid protease gluP [Listeria monocytogenes N53-1]
Length = 512
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 LLGGICGN 278
>gi|425287207|ref|ZP_18678138.1| rhomboid family protein [Escherichia coli 3006]
gi|408218685|gb|EKI42887.1| rhomboid family protein [Escherichia coli 3006]
Length = 591
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH++++HL++N ++ +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMFAFLVVGAVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S +
Sbjct: 68 IIWLFSGV 75
>gi|357390844|ref|YP_004905685.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311897321|dbj|BAJ29729.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 307
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 134 TNILLAVNVLV-----YIAQFATQDKLLLWGAKINSLIDKG------QFWRLATSAFLHA 182
T +L+ +N+LV Y+ Q ++ L ++ G +++RL ++ F+H
Sbjct: 94 TKVLIGINLLVFLFTQYVDQSWQKNPLGMYSWAPAPWERHGVAEGPLEWYRLVSAQFVHG 153
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ H+ N +SL +GP +E++ G RYL +Y S IA N
Sbjct: 154 GLMHIAANVFSLWVLGPQLERVLGRARYLTLYLVSGIAGN 193
>gi|309803097|ref|ZP_07697194.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|309806110|ref|ZP_07700129.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|329920170|ref|ZP_08277001.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|349611504|ref|ZP_08890739.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
gi|308164605|gb|EFO66855.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|308167465|gb|EFO69625.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|328936624|gb|EGG33068.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|348608597|gb|EGY58577.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
Length = 232
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGN 113
>gi|432812772|ref|ZP_20046620.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE101]
gi|431357100|gb|ELG43774.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE101]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|419863501|ref|ZP_14386029.1| hypothetical protein ECO9340_01011 [Escherichia coli O103:H25 str.
CVM9340]
gi|388342384|gb|EIL08419.1| hypothetical protein ECO9340_01011 [Escherichia coli O103:H25 str.
CVM9340]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|419327598|ref|ZP_13869230.1| rhomboid family protein [Escherichia coli DEC12C]
gi|378176175|gb|EHX36982.1| rhomboid family protein [Escherichia coli DEC12C]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|420108928|ref|ZP_14619138.1| rhomboid family protein [Escherichia coli O111:H11 str. CVM9553]
gi|424760182|ref|ZP_18187817.1| rhomboid family protein [Escherichia coli O111:H11 str.
CFSAN001630]
gi|394408512|gb|EJE83155.1| rhomboid family protein [Escherichia coli O111:H11 str. CVM9553]
gi|421946201|gb|EKU03347.1| rhomboid family protein [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|359429414|ref|ZP_09220440.1| putative rhomboid family protein [Acinetobacter sp. NBRC 100985]
gi|358235264|dbj|GAB01979.1| putative rhomboid family protein [Acinetobacter sp. NBRC 100985]
Length = 268
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+AVNV ++ Q T + + WGA L G+ RL +S F H +
Sbjct: 21 TAILIAVNVGLFGWQILTGVNITDPSPMDAIAWGADFTPLTFSGEPERLFSSMFFHFGLI 80
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HLM+N ++L G E++ G Y+G+YF + + +
Sbjct: 81 HLMLNMWALYIFGSVAEQLFGRSYYIGMYFLAGLMGS 117
>gi|312112526|ref|YP_003990842.1| rhomboid family protein [Geobacillus sp. Y4.1MC1]
gi|336236995|ref|YP_004589611.1| rhomboid family protein [Geobacillus thermoglucosidasius C56-YS93]
gi|311217627|gb|ADP76231.1| Rhomboid family protein [Geobacillus sp. Y4.1MC1]
gi|335363850|gb|AEH49530.1| Rhomboid family protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 204
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 157 LWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW I N+ I KG+ WR T LH H+++N SL GP +E + G ++L +Y
Sbjct: 42 LWEKMIGFNAAIKKGESWRFVTPLILHVRFEHMVINSISLILFGPALENMLGKGKFLILY 101
Query: 215 FSSAIASN 222
S I +N
Sbjct: 102 IGSGIFAN 109
>gi|218553198|ref|YP_002386111.1| hypothetical protein ECIAI1_0640 [Escherichia coli IAI1]
gi|417134997|ref|ZP_11979782.1| peptidase, S54 family [Escherichia coli 5.0588]
gi|419276853|ref|ZP_13819116.1| rhomboid family protein [Escherichia coli DEC10E]
gi|419353640|ref|ZP_13894924.1| rhomboid family protein [Escherichia coli DEC13C]
gi|419358970|ref|ZP_13900201.1| rhomboid family protein [Escherichia coli DEC13D]
gi|419374327|ref|ZP_13915379.1| rhomboid family protein [Escherichia coli DEC14B]
gi|419379605|ref|ZP_13920582.1| rhomboid family protein [Escherichia coli DEC14C]
gi|419390059|ref|ZP_13930898.1| rhomboid family protein [Escherichia coli DEC15A]
gi|419395235|ref|ZP_13936018.1| rhomboid family protein [Escherichia coli DEC15B]
gi|419405759|ref|ZP_13946462.1| rhomboid family protein [Escherichia coli DEC15D]
gi|419411250|ref|ZP_13951922.1| rhomboid family protein [Escherichia coli DEC15E]
gi|218359966|emb|CAQ97510.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI1]
gi|378133160|gb|EHW94507.1| rhomboid family protein [Escherichia coli DEC10E]
gi|378208535|gb|EHX68919.1| rhomboid family protein [Escherichia coli DEC13D]
gi|378208790|gb|EHX69170.1| rhomboid family protein [Escherichia coli DEC13C]
gi|378225505|gb|EHX85703.1| rhomboid family protein [Escherichia coli DEC14B]
gi|378233363|gb|EHX93452.1| rhomboid family protein [Escherichia coli DEC14C]
gi|378244861|gb|EHY04803.1| rhomboid family protein [Escherichia coli DEC15A]
gi|378250712|gb|EHY10615.1| rhomboid family protein [Escherichia coli DEC15B]
gi|378257488|gb|EHY17327.1| rhomboid family protein [Escherichia coli DEC15D]
gi|378261171|gb|EHY20967.1| rhomboid family protein [Escherichia coli DEC15E]
gi|386152851|gb|EIH04140.1| peptidase, S54 family [Escherichia coli 5.0588]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|416346257|ref|ZP_11679528.1| Putative membrane protein [Escherichia coli EC4100B]
gi|320198218|gb|EFW72822.1| Putative membrane protein [Escherichia coli EC4100B]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|260853907|ref|YP_003227798.1| rhomboid family protein [Escherichia coli O26:H11 str. 11368]
gi|417294304|ref|ZP_12081578.1| peptidase, S54 family [Escherichia coli 900105 (10e)]
gi|419214266|ref|ZP_13757296.1| rhomboid family protein [Escherichia coli DEC8D]
gi|419242126|ref|ZP_13784774.1| rhomboid family protein [Escherichia coli DEC9D]
gi|419929021|ref|ZP_14446718.1| rhomboid family protein [Escherichia coli 541-1]
gi|419948712|ref|ZP_14464983.1| rhomboid family protein [Escherichia coli CUMT8]
gi|420130568|ref|ZP_14639059.1| rhomboid family protein [Escherichia coli O26:H11 str. CVM9952]
gi|424750266|ref|ZP_18178333.1| rhomboid family protein [Escherichia coli O26:H11 str. CFSAN001629]
gi|425377504|ref|ZP_18761896.1| peptidase, S54 (Rhomboid) family [Escherichia coli EC1865]
gi|432966770|ref|ZP_20155687.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE203]
gi|257752556|dbj|BAI24058.1| rhomboid family protein [Escherichia coli O26:H11 str. 11368]
gi|378068194|gb|EHW30298.1| rhomboid family protein [Escherichia coli DEC8D]
gi|378094389|gb|EHW56187.1| rhomboid family protein [Escherichia coli DEC9D]
gi|386262019|gb|EIJ17466.1| peptidase, S54 family [Escherichia coli 900105 (10e)]
gi|388404415|gb|EIL64878.1| rhomboid family protein [Escherichia coli 541-1]
gi|388420788|gb|EIL80455.1| rhomboid family protein [Escherichia coli CUMT8]
gi|394433565|gb|EJF05574.1| rhomboid family protein [Escherichia coli O26:H11 str. CVM9952]
gi|408309660|gb|EKJ26811.1| peptidase, S54 (Rhomboid) family [Escherichia coli EC1865]
gi|421940918|gb|EKT98345.1| rhomboid family protein [Escherichia coli O26:H11 str. CFSAN001629]
gi|431473962|gb|ELH53785.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE203]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|432830622|ref|ZP_20064228.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE135]
gi|431379871|gb|ELG64781.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE135]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|420390048|ref|ZP_14889318.1| rhomboid family protein [Escherichia coli EPEC C342-62]
gi|391314804|gb|EIQ72347.1| rhomboid family protein [Escherichia coli EPEC C342-62]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|419368928|ref|ZP_13910057.1| rhomboid family protein [Escherichia coli DEC14A]
gi|378222134|gb|EHX82376.1| rhomboid family protein [Escherichia coli DEC14A]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|383177230|ref|YP_005455235.1| hypothetical protein SSON53_03290 [Shigella sonnei 53G]
gi|415814855|ref|ZP_11506453.1| rhomboid family protein [Escherichia coli LT-68]
gi|415852607|ref|ZP_11528958.1| rhomboid family protein [Shigella sonnei 53G]
gi|418262687|ref|ZP_12884066.1| rhomboid family protein [Shigella sonnei str. Moseley]
gi|420357327|ref|ZP_14858342.1| rhomboid family protein [Shigella sonnei 3226-85]
gi|323163919|gb|EFZ49728.1| rhomboid family protein [Shigella sonnei 53G]
gi|323170781|gb|EFZ56431.1| rhomboid family protein [Escherichia coli LT-68]
gi|391288408|gb|EIQ46913.1| rhomboid family protein [Shigella sonnei 3226-85]
gi|397903224|gb|EJL19531.1| rhomboid family protein [Shigella sonnei str. Moseley]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|309810248|ref|ZP_07704093.1| peptidase, S54 family [Lactobacillus iners SPIN 2503V10-D]
gi|312874222|ref|ZP_07734256.1| peptidase, S54 family [Lactobacillus iners LEAF 2052A-d]
gi|308169520|gb|EFO71568.1| peptidase, S54 family [Lactobacillus iners SPIN 2503V10-D]
gi|311090292|gb|EFQ48702.1| peptidase, S54 family [Lactobacillus iners LEAF 2052A-d]
Length = 232
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + G +E+ G RYL +Y S + N
Sbjct: 76 FHVICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGN 113
>gi|260842882|ref|YP_003220660.1| rhomboid family protein [Escherichia coli O103:H2 str. 12009]
gi|257758029|dbj|BAI29526.1| rhomboid family protein [Escherichia coli O103:H2 str. 12009]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|194429729|ref|ZP_03062245.1| peptidase, S54 (rhomboid) family [Escherichia coli B171]
gi|417176820|ref|ZP_12006616.1| peptidase, S54 family [Escherichia coli 3.2608]
gi|417179651|ref|ZP_12007641.1| peptidase, S54 family [Escherichia coli 93.0624]
gi|417252743|ref|ZP_12044502.1| peptidase, S54 family [Escherichia coli 4.0967]
gi|417621974|ref|ZP_12272301.1| rhomboid family protein [Escherichia coli STEC_H.1.8]
gi|419288122|ref|ZP_13830238.1| rhomboid family protein [Escherichia coli DEC11A]
gi|419293458|ref|ZP_13835518.1| rhomboid family protein [Escherichia coli DEC11B]
gi|419298940|ref|ZP_13840956.1| rhomboid family protein [Escherichia coli DEC11C]
gi|419305206|ref|ZP_13847118.1| rhomboid family protein [Escherichia coli DEC11D]
gi|419310258|ref|ZP_13852133.1| rhomboid family protein [Escherichia coli DEC11E]
gi|419315535|ref|ZP_13857362.1| rhomboid family protein [Escherichia coli DEC12A]
gi|419333035|ref|ZP_13874594.1| rhomboid family protein [Escherichia coli DEC12D]
gi|419338438|ref|ZP_13879926.1| rhomboid family protein [Escherichia coli DEC12E]
gi|419868760|ref|ZP_14391008.1| rhomboid family protein [Escherichia coli O103:H2 str. CVM9450]
gi|194412210|gb|EDX28516.1| peptidase, S54 (rhomboid) family [Escherichia coli B171]
gi|345385683|gb|EGX15522.1| rhomboid family protein [Escherichia coli STEC_H.1.8]
gi|378136089|gb|EHW97389.1| rhomboid family protein [Escherichia coli DEC11A]
gi|378146356|gb|EHX07508.1| rhomboid family protein [Escherichia coli DEC11B]
gi|378152656|gb|EHX13749.1| rhomboid family protein [Escherichia coli DEC11D]
gi|378156460|gb|EHX17510.1| rhomboid family protein [Escherichia coli DEC11C]
gi|378160891|gb|EHX21877.1| rhomboid family protein [Escherichia coli DEC11E]
gi|378174737|gb|EHX35560.1| rhomboid family protein [Escherichia coli DEC12A]
gi|378190232|gb|EHX50817.1| rhomboid family protein [Escherichia coli DEC12D]
gi|378193631|gb|EHX54163.1| rhomboid family protein [Escherichia coli DEC12E]
gi|386179512|gb|EIH56991.1| peptidase, S54 family [Escherichia coli 3.2608]
gi|386186313|gb|EIH69030.1| peptidase, S54 family [Escherichia coli 93.0624]
gi|386216674|gb|EII33163.1| peptidase, S54 family [Escherichia coli 4.0967]
gi|388343874|gb|EIL09773.1| rhomboid family protein [Escherichia coli O103:H2 str. CVM9450]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|433090993|ref|ZP_20277295.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE138]
gi|431614383|gb|ELI83538.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE138]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|417144261|ref|ZP_11986067.1| peptidase, S54 family [Escherichia coli 1.2264]
gi|386164144|gb|EIH25930.1| peptidase, S54 family [Escherichia coli 1.2264]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|74311192|ref|YP_309611.1| hypothetical protein SSON_0610 [Shigella sonnei Ss046]
gi|420362278|ref|ZP_14863200.1| rhomboid family protein [Shigella sonnei 4822-66]
gi|73854669|gb|AAZ87376.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|391296370|gb|EIQ54464.1| rhomboid family protein [Shigella sonnei 4822-66]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|417152441|ref|ZP_11991232.1| peptidase, S54 family [Escherichia coli 96.0497]
gi|417579930|ref|ZP_12230749.1| rhomboid family protein [Escherichia coli STEC_B2F1]
gi|417665782|ref|ZP_12315347.1| rhomboid family protein [Escherichia coli STEC_O31]
gi|345343559|gb|EGW75945.1| rhomboid family protein [Escherichia coli STEC_B2F1]
gi|386169165|gb|EIH35673.1| peptidase, S54 family [Escherichia coli 96.0497]
gi|397786706|gb|EJK97539.1| rhomboid family protein [Escherichia coli STEC_O31]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|289550680|ref|YP_003471584.1| membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|385784306|ref|YP_005760479.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|418413982|ref|ZP_12987198.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180212|gb|ADC87457.1| Putative membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|339894562|emb|CCB53844.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|410877620|gb|EKS25512.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 485
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I GP + L +Y S + N
Sbjct: 222 LSLFIFGKIVEAIIGPMKMLILYIISGLFGN 252
>gi|193069074|ref|ZP_03050032.1| peptidase, S54 (rhomboid) family [Escherichia coli E110019]
gi|432673632|ref|ZP_19909127.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE142]
gi|192957618|gb|EDV88063.1| peptidase, S54 (rhomboid) family [Escherichia coli E110019]
gi|431217964|gb|ELF15450.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE142]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|417595588|ref|ZP_12246252.1| rhomboid family protein [Escherichia coli 3030-1]
gi|345360110|gb|EGW92281.1| rhomboid family protein [Escherichia coli 3030-1]
Length = 591
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH++ +HL++N ++L +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMFALLVVGAVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S +
Sbjct: 68 IIWLFSGV 75
>gi|415827982|ref|ZP_11514704.1| rhomboid family protein [Escherichia coli OK1357]
gi|323184989|gb|EFZ70356.1| rhomboid family protein [Escherichia coli OK1357]
Length = 591
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH++ +HL++N ++L +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMFALLVVGAVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S +
Sbjct: 68 IIWLFSGV 75
>gi|205372266|ref|ZP_03225080.1| serine peptidase [Bacillus coahuilensis m4-4]
Length = 120
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
W +N I +G++WRL TS FLH +++HL+ N +L GP +E+ G R+
Sbjct: 45 WFGGVNLYIMQGEWWRLVTSIFLHYSLSHLVFNSLTLLLFGPYLEQFIGSIRF 97
>gi|82543099|ref|YP_407046.1| hypothetical protein SBO_0519 [Shigella boydii Sb227]
gi|417680835|ref|ZP_12330218.1| rhomboid family protein [Shigella boydii 3594-74]
gi|420324302|ref|ZP_14826086.1| rhomboid family protein [Shigella flexneri CCH060]
gi|420351450|ref|ZP_14852643.1| rhomboid family protein [Shigella boydii 4444-74]
gi|81244510|gb|ABB65218.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332097790|gb|EGJ02764.1| rhomboid family protein [Shigella boydii 3594-74]
gi|391256451|gb|EIQ15582.1| rhomboid family protein [Shigella flexneri CCH060]
gi|391287955|gb|EIQ46465.1| rhomboid family protein [Shigella boydii 4444-74]
Length = 588
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|300907835|ref|ZP_07125451.1| peptidase, S54 family protein [Escherichia coli MS 84-1]
gi|301302139|ref|ZP_07208272.1| peptidase, S54 family protein [Escherichia coli MS 124-1]
gi|415864155|ref|ZP_11537278.1| peptidase, S54 family protein [Escherichia coli MS 85-1]
gi|417637982|ref|ZP_12288152.1| rhomboid family protein [Escherichia coli TX1999]
gi|419168638|ref|ZP_13713035.1| rhomboid family protein [Escherichia coli DEC7A]
gi|419179631|ref|ZP_13723256.1| rhomboid family protein [Escherichia coli DEC7C]
gi|419185193|ref|ZP_13728715.1| rhomboid family protein [Escherichia coli DEC7D]
gi|419190440|ref|ZP_13733908.1| rhomboid family protein [Escherichia coli DEC7E]
gi|420384287|ref|ZP_14883673.1| rhomboid family protein [Escherichia coli EPECa12]
gi|427803728|ref|ZP_18970795.1| putative uncharacterized protein [Escherichia coli chi7122]
gi|427808319|ref|ZP_18975384.1| putative uncharacterized protein [Escherichia coli]
gi|433129023|ref|ZP_20314496.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE163]
gi|433133839|ref|ZP_20319217.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE166]
gi|443616693|ref|YP_007380549.1| hypothetical protein APECO78_06870 [Escherichia coli APEC O78]
gi|300400467|gb|EFJ84005.1| peptidase, S54 family protein [Escherichia coli MS 84-1]
gi|300842691|gb|EFK70451.1| peptidase, S54 family protein [Escherichia coli MS 124-1]
gi|315255037|gb|EFU35005.1| peptidase, S54 family protein [Escherichia coli MS 85-1]
gi|345395275|gb|EGX25024.1| rhomboid family protein [Escherichia coli TX1999]
gi|378018503|gb|EHV81360.1| rhomboid family protein [Escherichia coli DEC7A]
gi|378028092|gb|EHV90717.1| rhomboid family protein [Escherichia coli DEC7C]
gi|378032611|gb|EHV95192.1| rhomboid family protein [Escherichia coli DEC7D]
gi|378042543|gb|EHW04992.1| rhomboid family protein [Escherichia coli DEC7E]
gi|391309123|gb|EIQ66800.1| rhomboid family protein [Escherichia coli EPECa12]
gi|412961910|emb|CCK45822.1| putative uncharacterized protein [Escherichia coli chi7122]
gi|412968498|emb|CCJ43122.1| putative uncharacterized protein [Escherichia coli]
gi|431651373|gb|ELJ18634.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE163]
gi|431662433|gb|ELJ29208.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE166]
gi|443421201|gb|AGC86105.1| hypothetical protein APECO78_06870 [Escherichia coli APEC O78]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|373108079|ref|ZP_09522370.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
gi|371650245|gb|EHO15713.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
Length = 206
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHL 187
TN ++ +NVLV++ + D LL +GA I + ++WRL T+AFLH I HL
Sbjct: 13 TNWMILINVLVFLYTALRGGMSDNDILLRYGASYTPYIFENHEYWRLLTAAFLHFGIRHL 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N L G ++E G +YL Y SA+ ++
Sbjct: 73 GNNMLVLFVTGDSLEHALGHVKYLIFYLFSAVGAS 107
>gi|416269754|ref|ZP_11642515.1| putative membrane protein [Shigella dysenteriae CDC 74-1112]
gi|420378901|ref|ZP_14878396.1| rhomboid family protein [Shigella dysenteriae 225-75]
gi|320174706|gb|EFW49838.1| putative membrane protein [Shigella dysenteriae CDC 74-1112]
gi|391306267|gb|EIQ64027.1| rhomboid family protein [Shigella dysenteriae 225-75]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|187731357|ref|YP_001879335.1| peptidase, S54 (rhomboid) family [Shigella boydii CDC 3083-94]
gi|187428349|gb|ACD07623.1| peptidase, S54 (rhomboid) family [Shigella boydii CDC 3083-94]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|421681278|ref|ZP_16121106.1| rhomboid family protein [Shigella flexneri 1485-80]
gi|404341691|gb|EJZ68095.1| rhomboid family protein [Shigella flexneri 1485-80]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I GP + L +Y S + N
Sbjct: 222 LSLFIFGKIVEAIIGPMKMLILYIISGLFGN 252
>gi|289434618|ref|YP_003464490.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170862|emb|CBH27404.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 509
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYTLIL 270
Query: 215 FSSAIASN 222
I N
Sbjct: 271 IIGGICGN 278
>gi|422885139|ref|ZP_16931587.1| rhomboid family protein [Streptococcus sanguinis SK49]
gi|332358110|gb|EGJ35942.1| rhomboid family protein [Streptococcus sanguinis SK49]
Length = 227
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYIAQF-------ATQDKLLLWGAKINS--LIDKGQFWRLATSAFLHANI 184
T+ILL + LV++ F A + + +GA + +I+ Q WRL ++ F+H +
Sbjct: 12 TSILLILTTLVFVVMFVLRGFSYAEEQTIFEFGAVFSPAIIINPVQIWRLFSAIFVHIGL 71
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H +VN +L IG E I G R + +Y S + N
Sbjct: 72 EHFVVNVVTLYFIGRQAEDIFGSRNFFLLYVMSGLMGN 109
>gi|417167569|ref|ZP_12000351.1| peptidase, S54 family [Escherichia coli 99.0741]
gi|386171287|gb|EIH43332.1| peptidase, S54 family [Escherichia coli 99.0741]
Length = 625
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|114799025|ref|YP_759062.1| S54 family peptidase [Hyphomonas neptunium ATCC 15444]
gi|114739199|gb|ABI77324.1| peptidase, S54 (rhomboid) family [Hyphomonas neptunium ATCC 15444]
Length = 204
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 137 LLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
L+ +NV+ + F + ++ +LW + + D+G++ RL +S FLH N HL +N Y
Sbjct: 13 LIILNVIASLIAFRSAPFNNQNILW---VGPMKDRGEWHRLISSGFLHVNGPHLFLNMYG 69
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L GP +E + G +L +Y +S I +
Sbjct: 70 LYMFGPVIEHVLGGVNFLIIYLASLIGGS 98
>gi|377572160|ref|ZP_09801257.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
gi|377530656|dbj|GAB46422.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
Length = 237
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+L++ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLIFALCVLQAGVGDPGGASIFSAGDLLKSDVAAGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ VN SL +G +E G RYL VY + + + +
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVYVIALLGGSAA 111
>gi|428774966|ref|YP_007166753.1| rhomboid family protein [Halothece sp. PCC 7418]
gi|428689245|gb|AFZ42539.1| Rhomboid family protein [Halothece sp. PCC 7418]
Length = 528
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 137 LLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+ +N+LV+I + T D+L GA + I G+ WRL T+ FLH HL
Sbjct: 334 LMLINILVFILEIQQGGSQNLETLDQL---GAAVPEAIISGEPWRLFTANFLHYGSIHLG 390
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N L +GP +E G RYL +Y S IA+
Sbjct: 391 SNLLGLWILGPYVECYLGWVRYLIIYVISGIAA 423
>gi|305666511|ref|YP_003862798.1| putative transmembrane rhomboid family protein [Maribacter sp.
HTCC2170]
gi|88708778|gb|EAR01013.1| putative transmembrane rhomboid family protein [Maribacter sp.
HTCC2170]
Length = 247
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
LL +N+L ++A D++ W + + + W++ + F+H AH+ N Y+L +
Sbjct: 11 LLIINILFFVATSLYGDQMYQWFSLWFPKNENFELWQMVSHMFMHGGFAHIGFNMYALWA 70
Query: 197 IGPTMEKICGPRRYLGVYFSSAIAS 221
G +E++ G ++L YFS+ + +
Sbjct: 71 FGTPLERMWGKNKFLFFYFSAGLGA 95
>gi|288916640|ref|ZP_06411015.1| Rhomboid family protein [Frankia sp. EUN1f]
gi|288351895|gb|EFC86097.1| Rhomboid family protein [Frankia sp. EUN1f]
Length = 208
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q++R +AFLH N H++VN Y+L +G +E + G R +G++ + A+ N
Sbjct: 42 QYYRFVAAAFLHGNFLHILVNLYALFIMGHQLEAVVGRLRLIGLFLAGAVGGN 94
>gi|399041650|ref|ZP_10736664.1| putative membrane protein [Rhizobium sp. CF122]
gi|398060103|gb|EJL51937.1| putative membrane protein [Rhizobium sp. CF122]
Length = 1049
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ Q +L + +L+ Q+WRL T+ LH +I HL NC +L G +E++ G R
Sbjct: 299 SIQTLFMLGATQQEALLQDHQWWRLFTAPLLHGSIVHLGFNCLALWFAGRLLERLIGWRW 358
Query: 210 YLGVYFSSAIA 220
+ ++F+SA+
Sbjct: 359 FAAIFFASALG 369
>gi|430741443|ref|YP_007200572.1| hypothetical protein Sinac_0438 [Singulisphaera acidiphila DSM
18658]
gi|430013163|gb|AGA24877.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 654
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
T ++ A VLVY+A A + +L WGA S++ Q WRL TS FLH +
Sbjct: 273 TPLMAAACVLVYVAMVARGVSPIDPSPRVMLDWGASFGPSVVFDRQVWRLLTSMFLHFGL 332
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
HL +N + L + GP +E+ G + +Y S +
Sbjct: 333 IHLAMNLWCLLTTGPVVERFFGHLGFAALYVLSGLGG 369
>gi|375138853|ref|YP_004999502.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359819474|gb|AEV72287.1| putative membrane protein [Mycobacterium rhodesiae NBB3]
Length = 282
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVNV ++ Q + Q L+L+ + + G+++RL +SAFLH H++ N
Sbjct: 72 TYVLIAVNVAMFALQMMSSELQRGLVLF----SPAVADGEWYRLISSAFLHYGPTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +GP +E G R+ +Y SA+ +
Sbjct: 128 MWALYVVGPPLEAALGRLRFASLYLVSALGGS 159
>gi|29830873|ref|NP_825507.1| hypothetical protein SAV_4330 [Streptomyces avermitilis MA-4680]
gi|29607986|dbj|BAC72042.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 298
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWG 159
G GT H TA I R T IL+ +N+ V++ Q + D+ LL
Sbjct: 57 GGSGTGHAPTATQPRTIAGGTVAADPRLITKILIGLNLAVFLVQLSVGDRFTERFELLGR 116
Query: 160 AKINSL-----IDKGQFWRLATSAFLHA--NIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
A + L + +GQ +RL T+ FLH + H++ N SL IG +E G RYL
Sbjct: 117 AYVPLLGSLQGVAEGQSYRLLTAMFLHDPHSYVHILFNMLSLWWIGGPLEAALGRIRYLT 176
Query: 213 VYFSSAIASNN 223
+YF S +A +
Sbjct: 177 LYFVSGLAGSG 187
>gi|386284983|ref|ZP_10062202.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
gi|385344386|gb|EIF51103.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
Length = 226
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLL--WGAKINSL-IDKGQFWRLATSAFLHANI 184
T ILLA + +VY+ + D +L GA L + KG++WRL T+ FLH +
Sbjct: 11 TYILLASSSVVYLFSALLSQSLSDMDMQVLVDMGALFGPLTVLKGEWWRLLTAMFLHGGM 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL++N +SL +G E + YL +YF S I
Sbjct: 71 THLLMNMFSLYLVGRGAEMYFDTKSYLSIYFFSGIIGG 108
>gi|345302141|ref|YP_004824043.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
gi|345111374|gb|AEN72206.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
Length = 220
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 137 LLAVNVLVYIAQFA-TQDKLL-----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
LL +N LV++AQ T D+LL LW + W+L T +FLH AHL N
Sbjct: 24 LLILNGLVFLAQLVPTTDRLLIEWFALWPLGLPDFYPGFWPWQLITYSFLHGGFAHLFFN 83
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L G +E+ G RR+ YF + +
Sbjct: 84 MFALWMFGVPIERAWGSRRFGVYYFVCVVGAG 115
>gi|409392616|ref|ZP_11244170.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
gi|403197559|dbj|GAB87404.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
Length = 241
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLPAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAAAIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L TS FLH ++ H+ VN SL +G +E G RY+ VY + + + +
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYVAVYLIALLGGSAA 115
>gi|398309567|ref|ZP_10513041.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
mojavensis RO-H-1]
Length = 199
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL T FLHA HL+ N S+ P +E++ G R+L VY S + N
Sbjct: 53 VANGEWWRLVTPIFLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGMIGN 109
>gi|284162630|ref|YP_003401253.1| rhomboid family protein [Archaeoglobus profundus DSM 5631]
gi|284012627|gb|ADB58580.1| Rhomboid family protein [Archaeoglobus profundus DSM 5631]
Length = 225
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 133 WTNILLAVNVLVYIAQFAT-----------------QDKLLLWGAKINSLIDKGQFWRLA 175
W N ++A+ +L+Y+A+ T +D ++ + + + W++
Sbjct: 17 WNNTIIAICILIYLAKVLTGLLGIYAIIRMPFGVTYRDNIVDYLLALFPINVLSMPWQII 76
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
TS F+HA+ HL +N + L G +E+ G R+YL ++F+S IA N
Sbjct: 77 TSIFVHADFWHLFINMFVLFFFGNELERRLGERKYLIIFFASGIAGN 123
>gi|271961709|ref|YP_003335905.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
gi|270504884|gb|ACZ83162.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
Length = 291
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA-------HLMV 189
LL VN+L Y A+ + + + + +G++WRL T AFLH ++ H++
Sbjct: 82 LLIVNILAYAAESLSPSVVSAFQMSSGHVAFRGEWWRLITGAFLHMPLSAGGFALTHILF 141
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N ++L +IGP +E+ G R+L +Y SA+ +
Sbjct: 142 NMWALYAIGPELERRLGSLRFLVLYLLSALGGS 174
>gi|268315851|ref|YP_003289570.1| rhomboid family protein [Rhodothermus marinus DSM 4252]
gi|262333385|gb|ACY47182.1| Rhomboid family protein [Rhodothermus marinus DSM 4252]
Length = 220
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 137 LLAVNVLVYIAQFA-TQDKLL-----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
LL +N LV++AQ T D+LL LW + W+L T +FLH AHL N
Sbjct: 24 LLILNGLVFLAQLVPTTDRLLIEWFALWPLGLPDFYPGFWPWQLITYSFLHGGFAHLFFN 83
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
++L G +E+ G RR+ GVY+ +
Sbjct: 84 MFALWMFGVPIERAWGSRRF-GVYYFVCVVGAG 115
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E + G + L +Y + I N
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGN 253
>gi|449015504|dbj|BAM78906.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 364
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 134 TNILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T ++ +N+L Y+A+ A + LL GAKINS I GQ WRL T FLH
Sbjct: 110 TTGIIGINILTYLAELYFEVEGKLSGANSNILLALGAKINSAIAAGQLWRLFTPIFLHGG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ HL+ N Y+L +I E GP + +Y +S N
Sbjct: 170 LLHLLSNTYALYAISYECEMAYGPLAFAVIYLASGAWGN 208
>gi|383829530|ref|ZP_09984619.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
gi|383462183|gb|EID54273.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
Length = 317
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 15/101 (14%)
Query: 136 ILLAVNVLVYI-AQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+V++ F +D + +LW +++ ++WRL TS FLH
Sbjct: 97 LLIAVNVVVFVLTAFQARDAMNNYNSPVFAEGVLWP---QAVVAFDEWWRLITSGFLHYG 153
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ HL +N +L +G +E + G R+L VYF S + +
Sbjct: 154 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFVSMLGGGAA 194
>gi|379733579|ref|YP_005327084.1| putative rhomboid protease [Blastococcus saxobsidens DD2]
gi|378781385|emb|CCG01035.1| Putative rhomboid protease [Blastococcus saxobsidens DD2]
Length = 253
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
++ GQ WRL T+AFLH + HL +N +L G +E+ G RY+G+Y SA+ + +
Sbjct: 85 VEFGQPWRLLTAAFLHIGLLHLALNMLALLIFGSELERQLGRWRYVGLYLVSALGGSTA 143
>gi|423462496|ref|ZP_17439290.1| hypothetical protein IEI_05633 [Bacillus cereus BAG5X2-1]
gi|401131790|gb|EJQ39440.1| hypothetical protein IEI_05633 [Bacillus cereus BAG5X2-1]
Length = 190
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+L+ + D LL A N I KG++WRL TS +H ++ H + N L +G ++
Sbjct: 18 LLIQLVTIMLGDFLLFPMASYNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSI 77
Query: 202 EKICGPRRYLGVYFSSAIASNNS 224
EK G ++ ++F S I N S
Sbjct: 78 EKQLGHFSFIIIFFLSGILGNIS 100
>gi|327312704|ref|YP_004328141.1| peptidase, S54 family [Prevotella denticola F0289]
gi|326945988|gb|AEA21873.1| peptidase, S54 family [Prevotella denticola F0289]
Length = 318
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T LL +NVLV+IA +A + D L+G L + W+ T F+H N H+++
Sbjct: 8 TKNLLVINVLVFIATYALRGMDIDLDALFGLHF-FLAPDFRVWQFVTYMFMHGNFTHILM 66
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + L G +E + GP+++L Y I +
Sbjct: 67 NMFMLWMFGMVVENVWGPKKFLFYYLVCGIGAG 99
>gi|83748711|ref|ZP_00945727.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
gi|83724601|gb|EAP71763.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
Length = 224
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHA 182
+G + L+ NV+V++A+ D LL LW + + G F W+L T AFLHA
Sbjct: 24 VGAAMISSLILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGGFSPWQLLTYAFLHA 83
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++ HL+ N + + G +E+ G R +Y +S +++
Sbjct: 84 SVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSA 122
>gi|423405049|ref|ZP_17382222.1| hypothetical protein ICW_05447 [Bacillus cereus BAG2X1-2]
gi|423479886|ref|ZP_17456600.1| hypothetical protein IEO_05343 [Bacillus cereus BAG6X1-1]
gi|401645692|gb|EJS63342.1| hypothetical protein ICW_05447 [Bacillus cereus BAG2X1-2]
gi|402424278|gb|EJV56464.1| hypothetical protein IEO_05343 [Bacillus cereus BAG6X1-1]
Length = 190
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+L+ + D LL A N I KG++WRL TS +H ++ H + N L +G ++
Sbjct: 18 LLIQLVMIMLGDFLLFPMASYNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSI 77
Query: 202 EKICGPRRYLGVYFSSAIASNNS 224
EK G ++ ++F S I N S
Sbjct: 78 EKQLGHFSFIIIFFLSGILGNIS 100
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 48 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 106
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
SL G +E I G R L VYF + + N
Sbjct: 107 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGN 136
>gi|335430608|ref|ZP_08557497.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|335431252|ref|ZP_08558135.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334886957|gb|EGM25302.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334887825|gb|EGM26144.1| rhomboid family protein [Haloplasma contractile SSD-17B]
Length = 214
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 137 LLAVNVLVYIAQFATQDKLLL-----------WGAKINSLID-KGQFWRLATSAFLHANI 184
L+ +NVLV+I + LL GA ID GQF+R T+ FLH N
Sbjct: 23 LIVLNVLVFIIMMINRYTNLLTDLLNGYTLIQLGAIQTYTIDATGQFYRFLTAMFLHGNF 82
Query: 185 AHLMVNC-YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H++ N + L +G +E + G R+ VYF + IAS+
Sbjct: 83 LHILFNMFFGLIILGAALEGLIGSTRFFIVYFLTGIASS 121
>gi|319892596|ref|YP_004149471.1| membrane peptidase [Staphylococcus pseudintermedius HKU10-03]
gi|317162292|gb|ADV05835.1| Putative membrane peptidase, contains TPR repeat domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 479
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVY--IAQFA---TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++A+NVL++ + F T +++ GA + + G+++RL TS FLH HL+
Sbjct: 159 TYAVVAINVLIWLIVTWFTPHHTDYEIINLGALAHFNVVHGEWYRLITSMFLHIEFQHLL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N SL G +E GP + LG Y S I N
Sbjct: 219 LNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGN 252
>gi|289193057|ref|YP_003458998.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
gi|288939507|gb|ADC70262.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
Length = 190
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
W++ TS F+HANI HL+VN + L G +E + G ++YL ++ S I N
Sbjct: 39 WQIITSMFMHANITHLLVNMFVLFIFGTYLENMIGSKKYLIIFLLSGIIGN 89
>gi|386319193|ref|YP_006015356.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
gi|323464364|gb|ADX76517.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
Length = 479
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVY--IAQFA---TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++A+NVL++ + F T +++ GA + + G+++RL TS FLH HL+
Sbjct: 159 TYAVVAINVLIWLIVTWFTPHHTDYEIINLGALAHFNVVHGEWYRLITSMFLHIEFQHLL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N SL G +E GP + LG Y S I N
Sbjct: 219 LNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGN 252
>gi|315282195|ref|ZP_07870654.1| rhomboid family protein, partial [Listeria marthii FSL S4-120]
gi|313614157|gb|EFR87842.1| rhomboid family protein [Listeria marthii FSL S4-120]
Length = 302
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH + HL N L +G E+I G RY+ +
Sbjct: 1 LIKWGGKFNPLIYAGEWWRFISPIFLHNGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 60
Query: 215 FSSAIASN 222
I N
Sbjct: 61 LLGGICGN 68
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +NVL+++ Q + D L+LW + G +RL T+AFLH H++ N
Sbjct: 75 TYALIGLNVLMFVLQSLSPDVERALVLWPPAVAG----GDLYRLLTAAFLHYGFTHILFN 130
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++L +G +E G RY +Y SA+ +
Sbjct: 131 MWALYVVGAPLEAALGRLRYGALYLLSALGGS 162
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN 223
+++RL T+AFLHA + H++ N Y+L +G +E+I G RYL ++ AI N
Sbjct: 205 EYYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQILGRARYLALFVVCAIGGNT 258
>gi|300697598|ref|YP_003748259.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
gi|299074322|emb|CBJ53869.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
Length = 197
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLMVN 190
L+ NV+V++A+ D LL LW + + G F W+L T AFLHA++ HL+ N
Sbjct: 5 LILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGAFSPWQLLTYAFLHASVPHLVFN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ + G +E+ G R +Y +S +++
Sbjct: 65 MFGMFMFGRDVERTLGGVRTGVLYVASVLSA 95
>gi|171914466|ref|ZP_02929936.1| Rhomboid family protein [Verrucomicrobium spinosum DSM 4136]
Length = 323
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL-----------WGAKINSLIDKGQFWRLATSAFLHA 182
+L+ +NV V++ Q ++ WGA + +G+ W L T F+H
Sbjct: 25 VTLLVIINVAVFVLQVFGVGSSVVVMPDGTTDWQPWGAFSLQALLQGRVWTLVTHMFVHG 84
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N+ HL+ NC L G ++ + GPR +L +YF + +
Sbjct: 85 NLFHLVCNCLMLFFSGKGLQSLVGPRYFLYIYFIAGLGG 123
>gi|260063473|ref|YP_003196553.1| hypothetical protein RB2501_01655 [Robiginitalea biformata
HTCC2501]
gi|88782917|gb|EAR14091.1| hypothetical protein RB2501_01655 [Robiginitalea biformata
HTCC2501]
Length = 250
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN--IAHLMVNCYSL 194
LL +N+++Y+A ++L W A W++ + F+H+N H++ N Y+L
Sbjct: 11 LLVINIILYVAAMLYGEQLYDWLALWYPENPNFSIWQIVSHMFMHSNQTFMHILFNMYAL 70
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G +E++ G R++L YFS+ + +
Sbjct: 71 WAFGSPLERMWGTRKFLFFYFSAGLGA 97
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLL----LWG-------AKINSLIDKGQFWRLATSAF 179
R T IL+ +N+ V++A T D+L+ L G A I + +GQ++RL T+AF
Sbjct: 78 RLVTKILIGLNIAVWLAVLGTGDRLVDGFDLVGRAYDPGTADIVG-VAEGQWYRLLTAAF 136
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LH H+ N SL IG +E G RYL +Y S + +
Sbjct: 137 LHQQPLHIAFNMLSLWWIGAPLEAALGRARYLTLYLLSGLGGS 179
>gi|422418937|ref|ZP_16495892.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
gi|313633378|gb|EFS00218.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
Length = 414
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY +
Sbjct: 116 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALIL 175
Query: 215 FSSAIASN 222
I N
Sbjct: 176 IIGGICGN 183
>gi|167760294|ref|ZP_02432421.1| hypothetical protein CLOSCI_02667 [Clostridium scindens ATCC 35704]
gi|336421421|ref|ZP_08601579.1| hypothetical protein HMPREF0993_00956 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167662177|gb|EDS06307.1| peptidase, S54 family [Clostridium scindens ATCC 35704]
gi|336000700|gb|EGN30847.1| hypothetical protein HMPREF0993_00956 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 204
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAKINSLI-DKGQFWRLATSAFLHANIAHL 187
T +LLA NV V+ Q AT+D L + GA I ++G+++R+ TS FLH HL
Sbjct: 11 TILLLAANVAVFFLLSFQGATEDGLFMLEHGAMYVPFITEQGEYYRMFTSMFLHFGFEHL 70
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N +L IG +E G R+L +Y S + N
Sbjct: 71 FNNMITLVLIGWNLEVEIGSIRFLVIYILSGLGGN 105
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL----------------IDKGQFWRL 174
R T ILL +NV V++A AT L +N L + +G+++RL
Sbjct: 86 RLITKILLGLNVAVFVAVMATGGAL---SPLVNRLDLVGLAAEPGGYHLVGVAEGEWYRL 142
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
T+ FLH +AH+ N SL +GP +E G R++ +Y + + +
Sbjct: 143 LTAMFLHQQVAHIAFNMLSLWWLGPPLEAALGRARFIALYLLAGLGGS 190
>gi|422421998|ref|ZP_16498951.1| rhomboid family protein, partial [Listeria seeligeri FSL S4-171]
gi|313638066|gb|EFS03339.1| rhomboid family protein [Listeria seeligeri FSL S4-171]
Length = 424
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY +
Sbjct: 126 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALIL 185
Query: 215 FSSAIASN 222
I N
Sbjct: 186 IIGGICGN 193
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I +G+++RL T+ FLH + HL++N Y+L +G +E GP R+L +Y S + N
Sbjct: 134 IAEGEWYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGGN 190
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDK------GQFWRLATSAFLHAN 183
T IL+ +N+ V++A A D+ + L G + L+ + GQ++RL TS FLH +
Sbjct: 88 TKILIGINLAVFVAVLALGDRFVDEMSLIGLAYSPLLGEVVGLADGQWYRLLTSVFLHQD 147
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++H+ N +L +G +E G R+L +Y S + +
Sbjct: 148 LSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGD 186
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q+WRL T+ FLH +HL N +L IG +E GP R+L ++F + I+ N
Sbjct: 59 QWWRLITAGFLHVTFSHLAFNMITLYFIGRLLEIELGPWRFLALFFLTVISGN 111
>gi|325860244|ref|ZP_08173369.1| peptidase, S54 family [Prevotella denticola CRIS 18C-A]
gi|325482331|gb|EGC85339.1| peptidase, S54 family [Prevotella denticola CRIS 18C-A]
Length = 318
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T LL +NVLV+IA +A + D L+G L + W+ T F+H N H+++
Sbjct: 8 TKNLLVINVLVFIATYALRGMDIDLDALFGLHF-FLAPDFRVWQFITYMFMHGNFTHILM 66
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + L G +E + GP+++L Y I +
Sbjct: 67 NMFMLWMFGMVVENVWGPKKFLFYYLVCGIGAG 99
>gi|229917793|ref|YP_002886439.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229469222|gb|ACQ70994.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 241
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 134 TNILLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ + + +LV++ FA +++ G + + GQ++RL T+ F+H ++ HL+ N +
Sbjct: 18 VTLFIVIQLLVFVIDSFAPGLRIVATGGSFHLALADGQWYRLVTANFIHLSLGHLLFNSF 77
Query: 193 SLNSIGPTMEKICGPRRYLGVY-FSSAIA 220
+L GP ME++ G ++ Y F+ A+A
Sbjct: 78 ALIIFGPAMERMVGHVKFALFYVFAGALA 106
>gi|365827061|ref|ZP_09368936.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265470|gb|EHM95232.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 279
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+ + V Y+ Q A +L ++ G+ WR T+AFLHAN HL N
Sbjct: 77 TKVLIGLCVAAYVVQVLAPALDARL-----AFVPVVAAGEPWRFLTTAFLHANYMHLGFN 131
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
++L +G ++E + G R+ VY SA+ + +
Sbjct: 132 MWALWVLGGSLEPVLGRWRFTAVYLLSALGGSTA 165
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 INIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E I G R L +Y S + N
Sbjct: 225 LFIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|330818616|ref|YP_004362321.1| Rhomboid-like protein [Burkholderia gladioli BSR3]
gi|327371009|gb|AEA62365.1| Rhomboid-like protein [Burkholderia gladioli BSR3]
Length = 553
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A N+L++ A ++ WGA G +WRL TS+F H HL
Sbjct: 176 LVAANLLLFAAMVLNGVSPLQPDIPAMIRWGANYGPDTLDGDWWRLLTSSFEHFGALHLA 235
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVY-FSSAIASNNS 224
VN L GP E++ G R+L +Y F+ IAS S
Sbjct: 236 VNLLVLARFGPLAERLYGSFRFLSLYLFAGVIASMAS 272
>gi|384099562|ref|ZP_10000648.1| serine endopeptidase [Imtechella halotolerans K1]
gi|383832910|gb|EID72380.1| serine endopeptidase [Imtechella halotolerans K1]
Length = 248
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
LL +NV+++IA D++ A + + +W++ T F+H ++ H+ N Y+L +
Sbjct: 11 LLIINVIMFIATQVYGDQMTDLMAIWFPMNEHFHWWQIVTHMFMHGSVTHIFFNMYALWA 70
Query: 197 IGPTMEKICGPRRYLGVYFSSAIAS 221
G +E++ G ++L YFS+ + +
Sbjct: 71 FGSPLEQMWGRNKFLFFYFSAGLGA 95
>gi|390955217|ref|YP_006418975.1| hypothetical protein Aeqsu_2503 [Aequorivita sublithincola DSM
14238]
gi|390421203|gb|AFL81960.1| putative membrane protein [Aequorivita sublithincola DSM 14238]
Length = 246
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 134 TNILLAVNVLVYIA-QF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
LL +NVL +I QF D+L A QFW+ TS F+HAN H++ N
Sbjct: 8 VKFLLILNVLFFIGTQFTGGMADRLF---ALYYFENPNFQFWQPLTSMFMHANFFHILFN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
Y+L + G +E G +++L YFS+ + S
Sbjct: 65 MYALWAFGSPLEMRWGQKKFLFFYFSAGLGS 95
>gi|423393314|ref|ZP_17370540.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
gi|401630233|gb|EJS48040.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
Length = 190
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+L+ + D L A N+ I KG++WR+ TS F+H ++ H + N L +G ++
Sbjct: 18 LLIQLVMIILSDFSLFHMAAYNAYIAKGEWWRVITSLFVHVDLQHFLSNSICLFVLGSSI 77
Query: 202 EKICGPRRYLGVYFSSAIASNNS 224
EK G ++ ++F S I N S
Sbjct: 78 EKQLGHFSFIIIFFLSGIIGNIS 100
>gi|375092943|ref|ZP_09739208.1| putative membrane protein [Saccharomonospora marina XMU15]
gi|374653676|gb|EHR48509.1| putative membrane protein [Saccharomonospora marina XMU15]
Length = 309
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 134 TNILLAVNVLVYI-AQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLH 181
T +L+A+N+LVY+ QD + +LW I + ++WRL TS FLH
Sbjct: 95 TPVLIALNLLVYVLTAVQAQDFMRNDVSRLFNDGVLWPVGIAA---ADEWWRLVTSGFLH 151
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
+ H+ +N +L +G +E + G R+L VYF S + + +
Sbjct: 152 FGLLHIGMNMLALWILGRDLELLLGKVRFLAVYFVSMLGGSAA 194
>gi|383316784|ref|YP_005377626.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379043888|gb|AFC85944.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 216
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKG--------QFWRLATSAFLH 181
T +L+A+NVLVY+ Q D LL LW + + + W+L + AF+H
Sbjct: 9 TKVLMALNVLVYLLQQVWHDPLLVHAALWPLGPDQMAQTATGVVAVGFRPWQLISYAFMH 68
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++ H++ N +L G T+E+ G R++ YF+ + +
Sbjct: 69 GSVTHILFNMLALWMFGGTIERTLGTPRFVIYYFACLVCA 108
>gi|338730738|ref|YP_004660130.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
gi|335365089|gb|AEH51034.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
Length = 230
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVY--------IAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T ++L+ NVL+ I F Q LL+ GA+ L+ G+++R+ T+ F+H +
Sbjct: 7 TYVILSFNVLIAVFMFFLSSIPVFRNQAYLLIRLGAQYGPLVSGGEWYRVITAMFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ N Y+L G +E I G +++ Y + N
Sbjct: 67 LHLLFNSYALFYFGTIVESIYGTEKFVIFYLLAGAVGN 104
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|296121640|ref|YP_003629418.1| rhomboid family protein [Planctomyces limnophilus DSM 3776]
gi|296013980|gb|ADG67219.1| Rhomboid family protein [Planctomyces limnophilus DSM 3776]
Length = 293
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 135 NILLAVNVLVYIAQFA-TQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+I L V L ++ Q T LL+ +N S + +G+ WRL T FLH + H++ N
Sbjct: 114 SICLIVGYLTWLGQAGNTITPWLLFSTDMNWSELKEGELWRLITPIFLHFGLMHILFNAM 173
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L S+GP +E+ G LG + IASN
Sbjct: 174 WLVSLGPLIERRNGSFWLLGFVLITGIASN 203
>gi|428778503|ref|YP_007170289.1| hypothetical protein Dacsa_0117 [Dactylococcopsis salina PCC 8305]
gi|428692782|gb|AFZ48932.1| putative membrane protein [Dactylococcopsis salina PCC 8305]
Length = 522
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 137 LLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +NVLV+I + + L GA I I G+ WR+ T+ FLH HL+ N
Sbjct: 334 LMLINVLVFILEITQGGSQNLETLARLGAAIPKEIVSGEPWRVFTANFLHFGYIHLISNM 393
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
L + P +E G RYL VYF S I +
Sbjct: 394 LGLWILSPYVEFYLGWFRYLIVYFFSGIGA 423
>gi|374340237|ref|YP_005096973.1| hypothetical protein Marpi_1272 [Marinitoga piezophila KA3]
gi|372101771|gb|AEX85675.1| putative membrane protein [Marinitoga piezophila KA3]
Length = 235
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 155 LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L++ GA+ LI Q++R T+ F+H I H+ N Y+L +G +E++ GP ++L +
Sbjct: 44 LIVAGAQYGKLITIYHQYFRFITALFVHGGILHISFNLYALYYLGNIVERVYGPYKFLTI 103
Query: 214 YFSSAIASN 222
Y +S I
Sbjct: 104 YLASGIGGG 112
>gi|207739329|ref|YP_002257722.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
gi|206592703|emb|CAQ59609.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
Length = 197
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLMVN 190
L+ NV+V++A+ D LL LW + + G F W+L T AFLHA++ HL+ N
Sbjct: 5 LILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGGFSPWQLLTYAFLHASVPHLVFN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ + G +E+ G R +Y +S +++
Sbjct: 65 MFGMFMFGRDVERTLGRVRTGVLYVASVLSA 95
>gi|421861505|ref|ZP_16293507.1| uncharacterized membrane protein [Paenibacillus popilliae ATCC
14706]
gi|410828931|dbj|GAC43944.1| uncharacterized membrane protein [Paenibacillus popilliae ATCC
14706]
Length = 157
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
WRLAT+ FLH+ HL+ N +SL P ME+I G +Y +Y S + N +
Sbjct: 20 WRLATAMFLHSGFQHLLFNMFSLFVFAPPMERILGSFKYAVLYLLSGLLGNAA 72
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|386336259|ref|YP_006032429.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
gi|334198709|gb|AEG71893.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
Length = 197
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLMVN 190
L+ NV+V++A+ D LL LW + + G F W+L T AFLHA++ HL+ N
Sbjct: 5 LILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGGFFPWQLLTYAFLHASVPHLVFN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ + G +E+ G R +Y +S +++
Sbjct: 65 MFGMFMFGRDVERTLGRVRTGVLYVASVLSA 95
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|170725138|ref|YP_001759164.1| rhomboid family protein [Shewanella woodyi ATCC 51908]
gi|169810485|gb|ACA85069.1| Rhomboid family protein [Shewanella woodyi ATCC 51908]
Length = 360
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LLA+N+L+++A +T D + + + N ++ Q W L + FLH + HL+
Sbjct: 154 TYLLLALNILIFLAYGFDMSTTDTVFENFAMRSNEVLAGHQPWTLVSHMFLHGDFMHLVG 213
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVY 214
N Y L +G +E G ++LGVY
Sbjct: 214 NMYFLYVVGDNLEDALGRVKFLGVY 238
>gi|154505636|ref|ZP_02042374.1| hypothetical protein RUMGNA_03175 [Ruminococcus gnavus ATCC 29149]
gi|336431736|ref|ZP_08611578.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794075|gb|EDN76495.1| putative rhomboid protease GluP [Ruminococcus gnavus ATCC 29149]
gi|336019755|gb|EGN49477.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 200
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
+GA LI + Q++RL T FLH I HLM N L ++G +EK G ++L +YF
Sbjct: 39 YGAMYPPLIFEDAQYYRLITCIFLHFGIDHLMNNMVMLGALGWNLEKEIGSFKFLLIYFV 98
Query: 217 SAIASN 222
S I +N
Sbjct: 99 SGIGAN 104
>gi|218248147|ref|YP_002373518.1| rhomboid family protein [Cyanothece sp. PCC 8801]
gi|218168625|gb|ACK67362.1| Rhomboid family protein [Cyanothece sp. PCC 8801]
Length = 198
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA + ++ +G+ WRL T+ FLH + HL VN L +G +E G RYL +YF S
Sbjct: 39 GALVPQVVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLGRLVELKFGVFRYLIIYFVSG 98
Query: 219 IAS 221
+ +
Sbjct: 99 LGA 101
>gi|423421597|ref|ZP_17398686.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
gi|401097259|gb|EJQ05287.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
Length = 190
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+L+ + D L A N I KG++WR+ TS F+H ++ H + N L +G ++
Sbjct: 18 LLIQLVMIILSDFSLFHMAAYNEYIAKGEWWRVITSLFVHVDLQHFLSNSICLFVLGSSI 77
Query: 202 EKICGPRRYLGVYFSSAIASNNS 224
EK G ++ ++F S I N S
Sbjct: 78 EKQLGHFSFIIIFFLSGIIGNIS 100
>gi|260439384|ref|ZP_05793200.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
gi|292808180|gb|EFF67385.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
Length = 337
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 137 LLAVNVLVYIAQFA---TQDKLLL---WGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
L+A N++VYI + T + L G +ID +++RL TS FLHA + HL N
Sbjct: 153 LIAANIIVYIIVASGGNTYNGFYLATKGGLVAKYVIDYKEYYRLFTSMFLHAGVQHLASN 212
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
L +G T+E+I G RY +Y + +
Sbjct: 213 MIMLLFVGDTIERIVGHVRYAIIYLAGGL 241
>gi|257060526|ref|YP_003138414.1| rhomboid family protein [Cyanothece sp. PCC 8802]
gi|256590692|gb|ACV01579.1| Rhomboid family protein [Cyanothece sp. PCC 8802]
Length = 198
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA + ++ +G+ WRL T+ FLH + HL VN L +G +E G RYL +YF S
Sbjct: 39 GALVPQVVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLGRLVELKFGVFRYLIIYFVSG 98
Query: 219 IAS 221
+ +
Sbjct: 99 LGA 101
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|359425053|ref|ZP_09216156.1| rhomboid family protein [Gordonia amarae NBRC 15530]
gi|358239633|dbj|GAB05738.1| rhomboid family protein [Gordonia amarae NBRC 15530]
Length = 299
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 137 LLAVNVLVYI---AQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A NVLV++ Q D L W A + G++WRL T+ FLH ++ H+
Sbjct: 79 LIAFNVLVFVICVGQAGGTDMLNSSLFTDW-ALFKPFVHDGEYWRLLTAGFLHFSLTHIA 137
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
N SL +G +E G RY GVY +S + + +
Sbjct: 138 ANMLSLFLLGRDLELAIGYPRYAGVYLASLVGGSAA 173
>gi|406670924|ref|ZP_11078169.1| hypothetical protein HMPREF9706_00429 [Facklamia hominis CCUG
36813]
gi|405582440|gb|EKB56446.1| hypothetical protein HMPREF9706_00429 [Facklamia hominis CCUG
36813]
Length = 234
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 137 LLAVNVLVY---IAQFATQ---DKLLLWGAKINS-LIDKGQFWRLATSAFLHANIAHLMV 189
LL +NV+VY + +F + D L+ GAK N ++ Q++RL T +F+H HL
Sbjct: 16 LLLINVIVYAYMLIRFGSSTSFDALIATGAKSNFHIVAYHQWYRLITPSFIHIGFEHLFF 75
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
NC +L IG +E + G R+ ++F ++ N
Sbjct: 76 NCLTLYFIGQDLEALMGHWRFACLFFVASFGGN 108
>gi|405378611|ref|ZP_11032527.1| putative membrane protein [Rhizobium sp. CF142]
gi|397324861|gb|EJJ29210.1| putative membrane protein [Rhizobium sp. CF142]
Length = 575
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 133 WTNILLAVNVLVYIAQF------------ATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+T L+ + V VY+ + +T+ L+L G S+I ++WRL T+ L
Sbjct: 201 FTYALIGILVAVYVCELVFGVDMPKAGSPSTRTLLVLGGTFRPSIIADSEWWRLFTAPLL 260
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H + HL VNC SL G E++ G R + ++F SA+ +
Sbjct: 261 HGSPLHLAVNCISLWFAGGIFERLVGWRWFAAIFFISALGGS 302
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|443633959|ref|ZP_21118135.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346155|gb|ELS60216.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 199
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I N
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109
>gi|386587125|ref|YP_006083527.1| hypothetical protein SSUD12_2016 [Streptococcus suis D12]
gi|353739271|gb|AER20279.1| hypothetical protein SSUD12_2016 [Streptococcus suis D12]
Length = 225
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYI-------AQFATQDKLLLWGAKINSLI--DKGQFWRLATSAFLHANI 184
TN LLAV LV++ Q + +G ++ D Q WRL + F+H
Sbjct: 12 TNGLLAVTALVFLLIQVFRFGQTTAAYTIFEFGGMYGQVVRYDPTQLWRLISPIFVHIGW 71
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H + N +L +G +E + GPRR+ +Y S I N
Sbjct: 72 EHFLFNSITLLGLGYQLEGLFGPRRFFLLYLLSGIMGN 109
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|296332829|ref|ZP_06875289.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673175|ref|YP_003864847.1| hypothetical protein BSUW23_02400 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350264714|ref|YP_004876021.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|296150109|gb|EFG90998.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411419|gb|ADM36538.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|349597601|gb|AEP85389.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|407956158|dbj|BAM49398.1| hypothetical protein BEST7613_0467 [Bacillus subtilis BEST7613]
gi|407963429|dbj|BAM56668.1| hypothetical protein BEST7003_0467 [Bacillus subtilis BEST7003]
Length = 199
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I N
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109
>gi|255030928|ref|ZP_05302879.1| hypothetical protein LmonL_20683 [Listeria monocytogenes LO28]
Length = 199
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 133 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 192
Query: 215 FSSAI 219
I
Sbjct: 193 LLGGI 197
>gi|315636015|ref|ZP_07891274.1| rhomboid family protein [Arcobacter butzleri JV22]
gi|315479671|gb|EFU70345.1| rhomboid family protein [Arcobacter butzleri JV22]
Length = 187
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + VL Y+ Q Q LL+G + LI G +W+ TS F H IAHL +N +
Sbjct: 12 TNVIIIITVLFYLIQINVQQGSLLFGLNLYFLIG-GFYWQPLTSMFSHGGIAHLAMNMFV 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E+ G + ++ +Y + + ++
Sbjct: 71 LWQFGNYVERSRGAKAFVLLYLITGVLTS 99
>gi|323135989|ref|ZP_08071072.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
gi|322399080|gb|EFY01599.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
Length = 537
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIAQFA---TQD--KLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHL 187
T L+AVN LV++A+ A +Q+ L+ GA L+ +G+ WRL TSAFLH H
Sbjct: 347 TFALVAVNALVFVAEIALGGSQNLGTLVALGALWAPLVLQQGEDWRLLTSAFLHFGGMHF 406
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+N L IG +E G R L +Y A+ S+
Sbjct: 407 ALNMLMLALIGRDVEHEIGAIRTLALYLGGALFSS 441
>gi|302911024|ref|XP_003050402.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
gi|256731339|gb|EEU44689.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
Length = 569
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 161 KINSLIDKG----QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
K N ID+ Q++R TS FLHA + H++ N +IG ME+ GP R+L VY S
Sbjct: 319 KFNGDIDQSPQPNQWFRFITSIFLHAGVVHILFNLLVQLTIGKDMERAIGPVRFLLVYIS 378
Query: 217 SAIASN 222
+ I N
Sbjct: 379 AGIFGN 384
>gi|398307565|ref|ZP_10511151.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
vallismortis DV1-F-3]
Length = 199
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I N
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109
>gi|71066210|ref|YP_264937.1| rhomboid family protein [Psychrobacter arcticus 273-4]
gi|71039195|gb|AAZ19503.1| possible rhomboid family protein [Psychrobacter arcticus 273-4]
Length = 376
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL + +YI Q T + L+ WGA + WRL +SAFLH +
Sbjct: 13 TTLLLISFIGLYIVQVLTGVDANNPSTEALIKWGANALPFTMDNEPWRLVSSAFLHIGLM 72
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ N +++ G E + G ++L ++ +AI N
Sbjct: 73 HLLFNGFAMYFFGQIAEPMFGSLKFLTLFLLAAIGGN 109
>gi|384155260|ref|YP_005538075.1| rhomboid-like protein [Arcobacter butzleri ED-1]
gi|345468814|dbj|BAK70265.1| rhomboid-like protein [Arcobacter butzleri ED-1]
Length = 187
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + VL Y+ Q Q LL+G + LI G +W+ TS F H IAHL +N +
Sbjct: 12 TNVIIIITVLFYLIQINVQQGSLLFGLNLYFLIG-GFYWQPLTSMFSHGGIAHLAMNMFV 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E+ G + ++ +Y + + ++
Sbjct: 71 LWQFGNYVERSRGTKAFVLLYLITGVLTS 99
>gi|406837558|ref|ZP_11097152.1| hypothetical protein LvinD2_03024 [Lactobacillus vini DSM 20605]
Length = 244
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 128 FIGRQWTNILLAVNVLVYIAQ------FATQDKLL-LWGAKINSLIDKGQFWRLATSAFL 180
F G TN +L V V+ Y+ + F ++L GA+ N I G++WRL T FL
Sbjct: 27 FHGNWMTNAILFVTVVAYLVEVLLSGSFNINGQVLEQLGARWNPDIIAGEWWRLFTPIFL 86
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H I H+ N +L G +E++ G ++L +Y S + N
Sbjct: 87 HVTIYHIAFNMAALMYAGTIVEEVYGHFKFLLIYLFSGFSGN 128
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASN 222
G +E I G R L +Y S + N
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGN 253
>gi|221484805|gb|EEE23099.1| peptidase S54 family protein [Toxoplasma gondii GT1]
Length = 263
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILL---AVNVLVYIAQFA-------TQDKLLLWGAKIN 163
+ G L + + +F G W ++ A +++YI + L+L GA
Sbjct: 16 NSGDRTLRSWKDTVFPGISWDKSIVWITAAQIIMYIISCVLSRSYEPNERTLMLLGAAYA 75
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q WR+ T FLHA I HL++N + I +E+ G +++L YF SAI N
Sbjct: 76 PAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGN 134
>gi|119720561|ref|YP_921056.1| rhomboid family protein [Thermofilum pendens Hrk 5]
gi|119525681|gb|ABL79053.1| Rhomboid family protein [Thermofilum pendens Hrk 5]
Length = 444
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+RL TS FLHAN+AH+ N L + G ++E + G RY +YF+S I ++
Sbjct: 65 YRLFTSMFLHANLAHIFFNMLYLYTFGKSVEAVLGSERYFLLYFASGILAS 115
>gi|328875515|gb|EGG23879.1| hypothetical protein DFA_06017 [Dictyostelium fasciculatum]
Length = 206
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+ I++A+N+L+++ Q+ T+ +L + GQ+WR +S F H N+ HL +N S
Sbjct: 11 STIVIAINILIWVYQYETRSQLESVSFNFEKITRYGQYWRFISSTFTHINLVHLALNSIS 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L + +E+ G +Y+ F ++SN
Sbjct: 71 LWQL-RFLEQSIGLYQYVKYSFFILLSSN 98
>gi|157736846|ref|YP_001489529.1| rhomboid-like protein [Arcobacter butzleri RM4018]
gi|157698700|gb|ABV66860.1| rhomboid-like protein [Arcobacter butzleri RM4018]
Length = 187
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + VL Y+ Q Q LL+G + LI G +W+ TS F H IAHL +N +
Sbjct: 12 TNVIIIITVLFYLIQINVQQGSLLFGLNLYFLIG-GFYWQPLTSIFSHGGIAHLAMNMFV 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E+ G + ++ +Y + + ++
Sbjct: 71 LWQFGNYVERSRGAKAFVLLYLITGVLTS 99
>gi|281424725|ref|ZP_06255638.1| rhomboid family protein [Prevotella oris F0302]
gi|281401095|gb|EFB31926.1| rhomboid family protein [Prevotella oris F0302]
Length = 319
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKIN---------SLIDKGQFWRLATSAFLHANI 184
T LL VNV+ ++ + Q + G I+ L F++L T F+HAN+
Sbjct: 8 TKNLLIVNVVAFLMMWIFQGMNFMGGGPIDLNNIFGLHFFLASDFHFYQLVTYMFMHANL 67
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
H+ N ++L G +E + GPR++L Y I +
Sbjct: 68 EHIFFNMFALWMFGMVVENVWGPRKFLFYYILCGIGA 104
>gi|443326975|ref|ZP_21055612.1| putative membrane protein [Xenococcus sp. PCC 7305]
gi|442793404|gb|ELS02854.1| putative membrane protein [Xenococcus sp. PCC 7305]
Length = 203
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYIAQF---ATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ VN++V+I + + D L+ GA ++ I +G++WRL + FLH HL+
Sbjct: 12 TFILIFVNLVVFILEMRSGGSTDLPTLYRLGALVSENIKQGEWWRLINANFLHFGWFHLI 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
N +L IG +E G RYL VY S S
Sbjct: 72 SNMLALFFIGSIVELSIGVERYLIVYLLSGTGS 104
>gi|326779930|ref|ZP_08239195.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326660263|gb|EGE45109.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 303
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 28/117 (23%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGS 188
>gi|300774459|ref|ZP_07084322.1| rhomboid family protein [Chryseobacterium gleum ATCC 35910]
gi|300506274|gb|EFK37409.1| rhomboid family protein [Chryseobacterium gleum ATCC 35910]
Length = 242
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
W++ T F+H +I H++ N +L S GP +E+ G ++YL +YF+S + +
Sbjct: 47 WQIITHMFMHGSIMHILFNMMTLFSFGPILEQTLGDKKYLLLYFASGLGA 96
>gi|160878203|ref|YP_001557171.1| rhomboid family protein [Clostridium phytofermentans ISDg]
gi|160426869|gb|ABX40432.1| Rhomboid family protein [Clostridium phytofermentans ISDg]
Length = 396
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 134 TNILLAVNVLV--YIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVN 190
T +L+A+N +V Y +K++ G LI +++RL T FLHANI+HL+ N
Sbjct: 209 TLVLIALNAVVFFYTDLSGNYNKIISEGCIFWPLIKFNNEYYRLLTYQFLHANISHLVNN 268
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
L +G T+E+ G +YL +YF S I +
Sbjct: 269 MLILAIMGSTLERHVGKFKYLLIYFLSGIVA 299
>gi|182439278|ref|YP_001826997.1| hypothetical protein SGR_5485 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467794|dbj|BAG22314.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 303
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 28/117 (23%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGS 188
>gi|388854089|emb|CCF52239.1| uncharacterized protein [Ustilago hordei]
Length = 350
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 118 SHLDTARTNLFIGRQWTNIL---LAVNVLVYIAQFATQDKLLLWGAKINSL--------- 165
S++ + T F G + +L LA+N LV+I+ + L + +
Sbjct: 129 SYMASLDTRFFSGLPQSFVLYTLLALNFLVFISWLYASETLRKFSDSRPFIFLCKNFLSG 188
Query: 166 ---IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ +G++W + TS HA + H +VN SL+ + P + + GP +L +YF + +AS+
Sbjct: 189 WLNLSEGRWWTMITSCLSHAQLGHFLVNMISLSFMAPPVLALTGPSTFLALYFGAGVASS 248
>gi|389807333|ref|ZP_10204075.1| hypothetical protein UUA_06833 [Rhodanobacter thiooxydans LCS2]
gi|388444412|gb|EIM00524.1| hypothetical protein UUA_06833 [Rhodanobacter thiooxydans LCS2]
Length = 205
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
LL NV V+ Q+ LLL A + W++ TSAF+H +I H+ N +L
Sbjct: 12 LLIANVAVFFLQYVAGQFLLLHFALWPLGSGLFEVWQIVTSAFMHGSITHIAFNMLALYM 71
Query: 197 IGPTMEKICGPRRYLGVYFSSAIASN 222
G T+E+ G R + YF+ AI ++
Sbjct: 72 FGGTIERTFGAREFTIYYFTCAIVAS 97
>gi|422748318|ref|ZP_16802231.1| rhomboid family protein [Escherichia coli H252]
gi|323952773|gb|EGB48641.1| rhomboid family protein [Escherichia coli H252]
Length = 591
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL + WRL +S FLH++ +HL++N ++L +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMFALLVVGTVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S I
Sbjct: 68 IIWLFSGI 75
>gi|401403695|ref|XP_003881541.1| Rhomboid family 1 (Predicted), related [Neospora caninum Liverpool]
gi|325115954|emb|CBZ51508.1| Rhomboid family 1 (Predicted), related [Neospora caninum Liverpool]
Length = 264
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+L GA Q WR+ T FLHA I HL++N + I +E+ G +++L
Sbjct: 64 EQTLMLLGAAYAPAFSNLQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFL 123
Query: 212 GVYFSSAIASN 222
YF SAI N
Sbjct: 124 ATYFFSAIVGN 134
>gi|422753277|ref|ZP_16807104.1| rhomboid family protein [Escherichia coli H263]
gi|323958409|gb|EGB54115.1| rhomboid family protein [Escherichia coli H263]
Length = 591
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL + WRL +S FLH++ +HL++N ++L +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMFALLVVGTVAERILGKWRLL 67
Query: 212 GVYFSSAI 219
++ S I
Sbjct: 68 IIWLFSGI 75
>gi|423398825|ref|ZP_17376026.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|423409727|ref|ZP_17386876.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
gi|401646009|gb|EJS63643.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|401652842|gb|EJS70394.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
Length = 190
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L A N I KG++WRL TS +H ++ H + N L +G ++EK G ++
Sbjct: 29 DFFLFQMAAYNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIL 88
Query: 213 VYFSSAIASNNS 224
++F S I+ N S
Sbjct: 89 IFFLSGISGNIS 100
>gi|386757063|ref|YP_006230279.1| rhomboid family protein [Bacillus sp. JS]
gi|384930345|gb|AFI27023.1| Rhomboid family protein [Bacillus sp. JS]
Length = 199
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A N + G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I
Sbjct: 47 AGYNLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGI 106
Query: 220 ASN 222
N
Sbjct: 107 IGN 109
>gi|345006772|ref|YP_004809625.1| rhomboid family protein [halophilic archaeon DL31]
gi|344322398|gb|AEN07252.1| Rhomboid family protein [halophilic archaeon DL31]
Length = 294
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T +F+G W L V V +++Q ++D +L ++ + W TS F H
Sbjct: 84 TYVFLGLMWVTFALQVLVGTFVSQALSRDIFVL------TISNPEYVWTWFTSVFAHGGF 137
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
H+ VN L GP +E+ G +RY G++ S
Sbjct: 138 THIAVNSIGLYFFGPPVERRLGSKRYAGLFLISG 171
>gi|225012743|ref|ZP_03703178.1| Rhomboid family protein [Flavobacteria bacterium MS024-2A]
gi|225003276|gb|EEG41251.1| Rhomboid family protein [Flavobacteria bacterium MS024-2A]
Length = 245
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
LL +NV+ ++A + D + W A D Q W+ T F+H ++ H+ N + L
Sbjct: 11 LLIINVIFFVASLSLGDVMYDWFALHYPSNDNFQLWQPLTHMFMHGDLGHIFFNMFGLYM 70
Query: 197 IGPTMEKICGPRRYLGVYFSSAIAS 221
G +E++ G ++++ Y S+ +
Sbjct: 71 FGTPIEQMWGRKKFIFFYLSTGFGA 95
>gi|221504981|gb|EEE30646.1| rhomboid, putative [Toxoplasma gondii VEG]
Length = 263
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILL---AVNVLVYIAQFA-------TQDKLLLWGAKIN 163
+ G L + + +F G W ++ A +++YI + L+L GA
Sbjct: 16 NSGDRTLRSWKDTVFPGISWDKSIVWITAAQIIMYIISCVLSRSYEPNERTLMLLGAAYA 75
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q WR+ T FLHA I HL++N + I +E+ G +++L YF SAI N
Sbjct: 76 PAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGN 134
>gi|212712139|ref|ZP_03320267.1| hypothetical protein PROVALCAL_03221 [Providencia alcalifaciens DSM
30120]
gi|212685186|gb|EEB44714.1| hypothetical protein PROVALCAL_03221 [Providencia alcalifaciens DSM
30120]
Length = 680
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 137 LLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LL + V Y FA + LLL+GA + L G +WR S LH+ HL +N
Sbjct: 39 LLNIGVYFYQLNFAAPLESQEYNLLLFGANVYQLSLTGDWWRYPISMVLHSGWLHLGLNT 98
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+L IG E+ G RYL +Y + I
Sbjct: 99 LALLVIGIECERAFGKLRYLAIYLFAGI 126
>gi|417863891|ref|ZP_12508938.1| hypothetical protein C22711_0824 [Escherichia coli O104:H4 str.
C227-11]
gi|422991347|ref|ZP_16982118.1| hypothetical protein EUAG_00940 [Escherichia coli O104:H4 str.
C227-11]
gi|422993287|ref|ZP_16984051.1| hypothetical protein EUBG_00938 [Escherichia coli O104:H4 str.
C236-11]
gi|422998497|ref|ZP_16989253.1| hypothetical protein EUEG_00925 [Escherichia coli O104:H4 str.
09-7901]
gi|423006961|ref|ZP_16997704.1| hypothetical protein EUDG_03960 [Escherichia coli O104:H4 str.
04-8351]
gi|423008604|ref|ZP_16999342.1| hypothetical protein EUFG_00941 [Escherichia coli O104:H4 str.
11-3677]
gi|423022793|ref|ZP_17013496.1| hypothetical protein EUHG_00946 [Escherichia coli O104:H4 str.
11-4404]
gi|423027944|ref|ZP_17018637.1| hypothetical protein EUIG_00948 [Escherichia coli O104:H4 str.
11-4522]
gi|423033779|ref|ZP_17024463.1| hypothetical protein EUJG_02838 [Escherichia coli O104:H4 str.
11-4623]
gi|423036646|ref|ZP_17027320.1| hypothetical protein EUKG_00923 [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041765|ref|ZP_17032432.1| hypothetical protein EULG_00940 [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048453|ref|ZP_17039110.1| hypothetical protein EUMG_00941 [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052036|ref|ZP_17040844.1| hypothetical protein EUNG_00442 [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059002|ref|ZP_17047798.1| hypothetical protein EUOG_00942 [Escherichia coli O104:H4 str.
11-4632 C5]
gi|429722831|ref|ZP_19257726.1| hypothetical protein MO3_00903 [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429774928|ref|ZP_19306931.1| hypothetical protein C212_04571 [Escherichia coli O104:H4 str.
11-02030]
gi|429780193|ref|ZP_19312145.1| hypothetical protein C213_04574 [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784243|ref|ZP_19316156.1| hypothetical protein C214_04559 [Escherichia coli O104:H4 str.
11-02092]
gi|429789581|ref|ZP_19321456.1| hypothetical protein C215_04538 [Escherichia coli O104:H4 str.
11-02093]
gi|429795811|ref|ZP_19327637.1| hypothetical protein C216_04574 [Escherichia coli O104:H4 str.
11-02281]
gi|429801737|ref|ZP_19333515.1| hypothetical protein C217_04566 [Escherichia coli O104:H4 str.
11-02318]
gi|429805369|ref|ZP_19337116.1| hypothetical protein C218_04572 [Escherichia coli O104:H4 str.
11-02913]
gi|429810180|ref|ZP_19341882.1| hypothetical protein C219_04576 [Escherichia coli O104:H4 str.
11-03439]
gi|429815940|ref|ZP_19347599.1| hypothetical protein C220_04566 [Escherichia coli O104:H4 str.
11-04080]
gi|429821528|ref|ZP_19353141.1| hypothetical protein C221_04567 [Escherichia coli O104:H4 str.
11-03943]
gi|429907201|ref|ZP_19373170.1| hypothetical protein MO5_03870 [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911397|ref|ZP_19377353.1| hypothetical protein MO7_04177 [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917236|ref|ZP_19383176.1| hypothetical protein O7C_04190 [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922274|ref|ZP_19388195.1| hypothetical protein O7E_04197 [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429928090|ref|ZP_19393996.1| hypothetical protein O7G_05011 [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932020|ref|ZP_19397915.1| hypothetical protein O7I_03874 [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933624|ref|ZP_19399514.1| hypothetical protein O7K_00412 [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939280|ref|ZP_19405154.1| hypothetical protein O7M_00956 [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946923|ref|ZP_19412778.1| hypothetical protein O7O_03502 [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949555|ref|ZP_19415403.1| hypothetical protein S7Y_00951 [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957837|ref|ZP_19423666.1| hypothetical protein S91_04288 [Escherichia coli O104:H4 str.
Ec12-0466]
gi|341917180|gb|EGT66796.1| hypothetical protein C22711_0824 [Escherichia coli O104:H4 str.
C227-11]
gi|354858460|gb|EHF18911.1| hypothetical protein EUDG_03960 [Escherichia coli O104:H4 str.
04-8351]
gi|354858568|gb|EHF19018.1| hypothetical protein EUAG_00940 [Escherichia coli O104:H4 str.
C227-11]
gi|354864362|gb|EHF24791.1| hypothetical protein EUBG_00938 [Escherichia coli O104:H4 str.
C236-11]
gi|354877365|gb|EHF37725.1| hypothetical protein EUEG_00925 [Escherichia coli O104:H4 str.
09-7901]
gi|354879160|gb|EHF39501.1| hypothetical protein EUHG_00946 [Escherichia coli O104:H4 str.
11-4404]
gi|354883573|gb|EHF43892.1| hypothetical protein EUFG_00941 [Escherichia coli O104:H4 str.
11-3677]
gi|354885558|gb|EHF45855.1| hypothetical protein EUIG_00948 [Escherichia coli O104:H4 str.
11-4522]
gi|354888244|gb|EHF48505.1| hypothetical protein EUJG_02838 [Escherichia coli O104:H4 str.
11-4623]
gi|354901729|gb|EHF61856.1| hypothetical protein EUKG_00923 [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354904545|gb|EHF64636.1| hypothetical protein EULG_00940 [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354907202|gb|EHF67267.1| hypothetical protein EUMG_00941 [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354918012|gb|EHF77973.1| hypothetical protein EUOG_00942 [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354921987|gb|EHF81906.1| hypothetical protein EUNG_00442 [Escherichia coli O104:H4 str.
11-4632 C4]
gi|429351744|gb|EKY88464.1| hypothetical protein C212_04571 [Escherichia coli O104:H4 str.
11-02030]
gi|429351877|gb|EKY88596.1| hypothetical protein C213_04574 [Escherichia coli O104:H4 str.
11-02033-1]
gi|429353205|gb|EKY89914.1| hypothetical protein C214_04559 [Escherichia coli O104:H4 str.
11-02092]
gi|429367118|gb|EKZ03719.1| hypothetical protein C215_04538 [Escherichia coli O104:H4 str.
11-02093]
gi|429368029|gb|EKZ04621.1| hypothetical protein C216_04574 [Escherichia coli O104:H4 str.
11-02281]
gi|429370524|gb|EKZ07090.1| hypothetical protein C217_04566 [Escherichia coli O104:H4 str.
11-02318]
gi|429382911|gb|EKZ19375.1| hypothetical protein C218_04572 [Escherichia coli O104:H4 str.
11-02913]
gi|429385144|gb|EKZ21598.1| hypothetical protein C221_04567 [Escherichia coli O104:H4 str.
11-03943]
gi|429385667|gb|EKZ22120.1| hypothetical protein C219_04576 [Escherichia coli O104:H4 str.
11-03439]
gi|429397360|gb|EKZ33707.1| hypothetical protein C220_04566 [Escherichia coli O104:H4 str.
11-04080]
gi|429398723|gb|EKZ35056.1| hypothetical protein MO3_00903 [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429398806|gb|EKZ35138.1| hypothetical protein MO5_03870 [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409640|gb|EKZ45867.1| hypothetical protein O7C_04190 [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429411736|gb|EKZ47942.1| hypothetical protein O7G_05011 [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429418474|gb|EKZ54618.1| hypothetical protein O7I_03874 [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429428094|gb|EKZ64174.1| hypothetical protein O7M_00956 [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429429615|gb|EKZ65683.1| hypothetical protein O7K_00412 [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429435762|gb|EKZ71780.1| hypothetical protein O7E_04197 [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429439432|gb|EKZ75415.1| hypothetical protein S7Y_00951 [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429444903|gb|EKZ80848.1| hypothetical protein O7O_03502 [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450482|gb|EKZ86377.1| hypothetical protein S91_04288 [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456697|gb|EKZ92542.1| hypothetical protein MO7_04177 [Escherichia coli O104:H4 str.
Ec11-9941]
Length = 358
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++ L++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSQLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|115379487|ref|ZP_01466582.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|310822642|ref|YP_003955000.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363496|gb|EAU62636.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|309395714|gb|ADO73173.1| Rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
Length = 236
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 131 RQWTNILLAV----NVLVYIAQFATQDKLLLWG----------AKINSLIDKGQFWRLAT 176
R+WT + AV V+ ++ F + L+ G A LI +GQ WR+ T
Sbjct: 24 RRWTPVCSAVLALSVVMFFLDGFLLRQGLIPGGDWLERVGKPLALYGPLIQQGQPWRVLT 83
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
AF H HL+ N + ++GP++E+ G R+LG+ + + S
Sbjct: 84 YAFEHGGPIHLLFNMSAAFTLGPSLERAIGSWRFLGLSLVTCVGS 128
>gi|443670730|ref|ZP_21135859.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
gi|443416665|emb|CCQ14196.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
Length = 251
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L+ G +RL S F+H HL+VN ++L IG +E I G RYL VYF S + + S
Sbjct: 67 LVANGDLFRLIGSGFVHIGPIHLLVNMFALYLIGRDVELILGRSRYLAVYFLSLLGGSAS 126
>gi|266621088|ref|ZP_06114023.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
gi|288867244|gb|EFC99542.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
Length = 206
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 131 RQWTNI-LLAVNVLVYIAQFATQDK-----LLLWGAKINSL-IDKGQFWRLATSAFLHAN 183
+ + NI L+A+NVL ++ AT ++ GA L I++G+++RL TS F+H
Sbjct: 9 KAYVNIGLIALNVLYFLFLEATGSSENTSFMVAHGAMYAPLVIERGEYYRLITSVFMHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I+H+M N L +G +E+ G +YL Y + +N
Sbjct: 69 ISHIMNNMLILFILGDNLERALGHIKYLFFYLICGVGAN 107
>gi|325000791|ref|ZP_08121903.1| serine peptidase [Pseudonocardia sp. P1]
Length = 254
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 137 LLAVNVLVYIAQFATQDKL------LLWGAKINSLID--KGQFWRLATSAFLHANIAHLM 188
L+AVNV V++ T L L+G + +D GQ WRL T+ FLH HL
Sbjct: 48 LIAVNVAVFVLTVVTAGSLNRNFDSPLFGLGALTPVDVADGQLWRLVTAGFLHIGPLHLA 107
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVY 214
N ++L IG +E + G R+ VY
Sbjct: 108 FNMFALWVIGREVEAVLGRARFTAVY 133
>gi|445491442|ref|ZP_21459757.1| peptidase, S54 family [Acinetobacter baumannii AA-014]
gi|444764576|gb|ELW88889.1| peptidase, S54 family [Acinetobacter baumannii AA-014]
Length = 269
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+++NV ++I Q + + L WGA L GQ RL TS F H I
Sbjct: 21 TALLISINVGLFIWQIVSGVDISDPAIKDALRWGADFTPLTFSGQPERLFTSMFFHFGII 80
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HLM+N ++L G E + G ++G+Y + +
Sbjct: 81 HLMLNMWALYIFGNVAEALFGRLYFIGLYLLAGL 114
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIA 185
+L + VL++I + T D LL WG I D +WRL T FLHA
Sbjct: 18 ILTLTVLIFILELVIGGGQTDDGQLLVVLGAKWGPYIKLHHD---YWRLVTPLFLHAGFM 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H+ N +L IGP +E G R++L +Y S + N
Sbjct: 75 HVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGN 111
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N+ L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVALWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHYNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E + G + L +Y + I N
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGN 253
>gi|16077528|ref|NP_388342.1| hypothetical protein BSU04610 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308284|ref|ZP_03590131.1| hypothetical protein Bsubs1_02613 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312606|ref|ZP_03594411.1| hypothetical protein BsubsN3_02589 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317529|ref|ZP_03598823.1| hypothetical protein BsubsJ_02548 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321805|ref|ZP_03603099.1| hypothetical protein BsubsS_02619 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314135|ref|YP_004206422.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402774706|ref|YP_006628650.1| protein YdcA [Bacillus subtilis QB928]
gi|452916522|ref|ZP_21965145.1| rhomboid family protein [Bacillus subtilis MB73/2]
gi|81345920|sp|P96617.1|YDCA_BACSU RecName: Full=Putative rhomboid protease YdcA
gi|1881271|dbj|BAA19298.1| ydcA [Bacillus subtilis]
gi|2632761|emb|CAB12268.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|320020409|gb|ADV95395.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402479891|gb|AFQ56400.1| YdcA [Bacillus subtilis QB928]
gi|452114662|gb|EME05061.1| rhomboid family protein [Bacillus subtilis MB73/2]
Length = 199
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I N
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109
>gi|417551284|ref|ZP_12202362.1| peptidase, S54 family [Acinetobacter baumannii Naval-18]
gi|417566181|ref|ZP_12217055.1| peptidase, S54 family [Acinetobacter baumannii OIFC143]
gi|395557937|gb|EJG23938.1| peptidase, S54 family [Acinetobacter baumannii OIFC143]
gi|400385739|gb|EJP48814.1| peptidase, S54 family [Acinetobacter baumannii Naval-18]
Length = 269
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+++NV ++I Q + + L WGA L GQ RL TS F H I
Sbjct: 21 TALLISINVGLFIWQIVSGVDISDPAIKDALRWGADFTPLTFSGQPERLFTSMFFHFGII 80
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HLM+N ++L G E + G ++G+Y + +
Sbjct: 81 HLMLNMWALYIFGNVAEALFGRLYFIGLYLLAGL 114
>gi|359765361|ref|ZP_09269192.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
gi|359317295|dbj|GAB22025.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
Length = 264
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 40 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 99
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L VN SL +G +E G R++ VY ++ + + +
Sbjct: 100 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAA 137
>gi|430756886|ref|YP_007210796.1| hypothetical protein A7A1_1394 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021406|gb|AGA22012.1| Hypothetical protein YdcA [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 199
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I N
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109
>gi|170575293|ref|XP_001893178.1| Rhomboid family protein [Brugia malayi]
gi|158600953|gb|EDP37994.1| Rhomboid family protein [Brugia malayi]
Length = 351
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
+E +H R L G + T IL+ +NV+V + +L +W NS K
Sbjct: 112 NEAKNHFAKYR-RLRDGVKCTFILVGINVMVMLMWGIKPWQLFMWRWFTNSFASKALCLP 170
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGP-TMEKICGPRRYLGVYFSSAIASN 222
+ SAF HAN+ HL++N Y LN+ P +++ G ++ Y ++A S+
Sbjct: 171 MVLSAFSHANMLHLVLNMYVLNTFAPVSIDCFLGIEQFWAFYITAAAVSS 220
>gi|261402576|ref|YP_003246800.1| rhomboid family protein [Methanocaldococcus vulcanius M7]
gi|261369569|gb|ACX72318.1| Rhomboid family protein [Methanocaldococcus vulcanius M7]
Length = 222
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
W+L TS F+HA I HL++N + L G +E++ G ++Y+ V+ S I N
Sbjct: 54 WQLITSIFMHATITHLLLNMFVLFFFGTYLERLIGAKKYILVFLISGIVGN 104
>gi|124004455|ref|ZP_01689300.1| rhomboid family protein [Microscilla marina ATCC 23134]
gi|123990027|gb|EAY29541.1| rhomboid family protein [Microscilla marina ATCC 23134]
Length = 322
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 137 LLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
LL +NV V+ A F ++D L ++G + + W+L T FLHA+ HL+ N L
Sbjct: 11 LLIINVFVFFADSFISKDALSIYGTLWYVEFPEFKPWQLLTHMFLHADFFHLLGNMMGLF 70
Query: 196 SIGPTMEKICGPRRYLGVYFS 216
GP +E+ G R + YF+
Sbjct: 71 FFGPWLEQNWGARNFFIFYFA 91
>gi|402590037|gb|EJW83968.1| rhomboid family protein [Wuchereria bancrofti]
Length = 351
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
G + T IL+ +NV+V + +L +W NS K + SAF HAN+ HL++
Sbjct: 127 GVKCTFILVGINVMVMLMWGIKPWQLFMWRWFTNSFASKALCLPMVLSAFSHANMLHLVL 186
Query: 190 NCYSLNSIGP-TMEKICGPRRYLGVYFSSAIASN 222
N Y LN+ P +++ G ++ Y ++A S+
Sbjct: 187 NMYVLNTFAPVSIDCFLGIEQFWAFYITAAAVSS 220
>gi|308050685|ref|YP_003914251.1| rhomboid family protein [Ferrimonas balearica DSM 9799]
gi|307632875|gb|ADN77177.1| Rhomboid family protein [Ferrimonas balearica DSM 9799]
Length = 348
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 134 TNILLAVNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T L+ + +L+ +AQF T D L L + + ++ Q W L T+ F+H
Sbjct: 138 TPWLVYLLILINVAQFGLELAYPNWMQWTYDNLTL---RPDQVMAGQQLWSLLTNMFIHG 194
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
++AHL+ N Y L +G +E + G R+L +Y + +
Sbjct: 195 SVAHLLGNMYFLYVVGDNLEDVLGRWRFLAIYLACGLVGG 234
>gi|386774818|ref|ZP_10097196.1| membrane protein [Brachybacterium paraconglomeratum LC44]
Length = 313
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWG--AKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
T L+A+ VL Y+ Q + G A +L W T+ FLH I HL +N
Sbjct: 95 TYTLIALCVLAYLGQMVAPQIVEQLGIFAPFRAL---AMPWTFLTAGFLHGGIMHLALNM 151
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
Y+L ++G +E+ GP R+ +YF S + + +
Sbjct: 152 YALWAMGQFLERSLGPARFAAIYFVSMLGGHTA 184
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 41 INIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 99
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E I G R L +Y S + N
Sbjct: 100 LFIFGKIVESIIGSWRMLIIYIISGLYGN 128
>gi|260550677|ref|ZP_05824885.1| rhomboid family protein [Acinetobacter sp. RUH2624]
gi|424056413|ref|ZP_17793934.1| hypothetical protein W9I_02783 [Acinetobacter nosocomialis Ab22222]
gi|425741039|ref|ZP_18859198.1| peptidase, S54 family [Acinetobacter baumannii WC-487]
gi|260406183|gb|EEW99667.1| rhomboid family protein [Acinetobacter sp. RUH2624]
gi|407441453|gb|EKF47959.1| hypothetical protein W9I_02783 [Acinetobacter nosocomialis Ab22222]
gi|425493886|gb|EKU60110.1| peptidase, S54 family [Acinetobacter baumannii WC-487]
Length = 269
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+++NV ++I Q + + L WGA L GQ RL TS F H I
Sbjct: 21 TALLISINVGLFIWQIVSGVDISDPAIKDALRWGADFTPLTFSGQPERLFTSMFFHFGII 80
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HLM+N ++L G E + G ++G+Y + +
Sbjct: 81 HLMLNMWALYIFGNVAEALFGRLYFIGLYLLAGL 114
>gi|428183558|gb|EKX52415.1| hypothetical protein GUITHDRAFT_161181 [Guillardia theta CCMP2712]
Length = 352
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-----------LLLWGAKINSLIDKGQFWRLATSAF 179
+ + I+ + VLV++ + A + L + G K+ LI G++WRL T
Sbjct: 119 QTFIGIITMLQVLVFVIEVALSNSWSAILDVPSPVLAVMGGKVAPLIAAGEYWRLITPIM 178
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
LHA + HL++N ++ G +E+ G + +Y + I N
Sbjct: 179 LHAGLFHLLINAFTQCMFGIQLEREWGAAQIAIIYVCAGIYGN 221
>gi|430746399|ref|YP_007205528.1| membrane protein [Singulisphaera acidiphila DSM 18658]
gi|430018119|gb|AGA29833.1| uncharacterized membrane protein [Singulisphaera acidiphila DSM
18658]
Length = 299
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 25/112 (22%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL------IDK--------------GQ 170
R T L+AV+V+V++ Q ++ GA +N+L ID+ G+
Sbjct: 105 RPLTTGLIAVSVVVFLLQNSSYG-----GATVNALSFTLRVIDEFGIRRSLGLLPILHGE 159
Query: 171 FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
WRL T F+H NI H++ N + L ++G +E G + V F SA+ASN
Sbjct: 160 VWRLITPIFIHFNILHILFNMWWLWTLGSLVESRRGTKTLAAVVFLSAMASN 211
>gi|430749675|ref|YP_007212583.1| hypothetical protein Theco_1430 [Thermobacillus composti KWC4]
gi|430733640|gb|AGA57585.1| putative membrane protein [Thermobacillus composti KWC4]
Length = 201
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQF-----WRLATSAFLHANIAHLM 188
T+++LA+N+LV+IA L + + WR TS FLH HL+
Sbjct: 19 TSVILALNLLVFIADLVLPGDPLFEAGFFRMIPVYDPYGLVEPWRYLTSVFLHVGWEHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N ++L P +E++ G RY Y + I N
Sbjct: 79 FNGFALLVFAPPLERLLGHGRYAAFYLMAGILGN 112
>gi|226952474|ref|ZP_03822938.1| rhomboid family protein [Acinetobacter sp. ATCC 27244]
gi|226836796|gb|EEH69179.1| rhomboid family protein [Acinetobacter sp. ATCC 27244]
Length = 267
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+AVNV ++ Q T + + WGA L GQ RL +S F H +
Sbjct: 21 TAALIAVNVSLFGWQILTGVDITDPSPVDAIAWGADFTPLTFLGQPERLFSSMFFHFGMI 80
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HLM+N ++L G E++ G R Y+ +YF + + +
Sbjct: 81 HLMLNMWALYIFGSIAEQLFGRRYYIALYFLAGLMGS 117
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 134 TNILLAVNVLVYI-AQFATQDKL---LLWG----AKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N +V++ Q + + +L L+ G A + + G+F+RL T+ FLHA++
Sbjct: 78 TYLLIAINAVVFLLEQVSPRFELRYALIPGETGFAHPYAGVAGGEFYRLITAMFLHASVL 137
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
H++ N ++L +G +E + G R+L +YF + + + +
Sbjct: 138 HIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGSTA 176
>gi|326329176|ref|ZP_08195504.1| rhomboid family protein [Nocardioidaceae bacterium Broad-1]
gi|325953063|gb|EGD45075.1| rhomboid family protein [Nocardioidaceae bacterium Broad-1]
Length = 268
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+D G W+L TS F H +I HL VN SL +G +E I G R+L Y S +A +
Sbjct: 101 VDDGAVWQLLTSTFTHVSIIHLAVNMLSLYMLGSFLEPIVGRLRFLVFYLISGLAGS 157
>gi|261886402|ref|ZP_06010441.1| rhomboid family protein [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 172
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+A+N +VY +++ + + +G +N L +G +W+L T+ FLH ++ H+++N
Sbjct: 4 TPFLIAINAVVYFLEYSVYNSRSFSIFFG--LNELFFEGAYWQLITTMFLHGSLMHILMN 61
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E+ G ++L +Y + ++
Sbjct: 62 MAVLYQFGMLLERYLGSVKFLLLYIVGGVITS 93
>gi|377564810|ref|ZP_09794121.1| rhomboid family protein [Gordonia sputi NBRC 100414]
gi|377527964|dbj|GAB39286.1| rhomboid family protein [Gordonia sputi NBRC 100414]
Length = 234
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVNV+++ + Q + D L G + + + G++WRL T+ FLH + H
Sbjct: 14 TYALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ +N SL +G +E G R+L VYF
Sbjct: 74 IALNMISLYILGRDLETALGHSRFLMVYF 102
>gi|257453937|ref|ZP_05619213.1| S54 family peptidase [Enhydrobacter aerosaccus SK60]
gi|257448602|gb|EEV23569.1| S54 family peptidase [Enhydrobacter aerosaccus SK60]
Length = 291
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T L+ WGA WRL TS FLH HL+ N ++L G E++ G +
Sbjct: 42 TNQSLIAWGANFLPFSLGEAPWRLVTSLFLHIGFMHLLFNMFALYYFGQVAERMFGAVNF 101
Query: 211 LGVYFSSAIASN 222
LG++ S + N
Sbjct: 102 LGLFLLSGVGGN 113
>gi|449093160|ref|YP_007425651.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
gi|449027075|gb|AGE62314.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
Length = 208
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I N
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109
>gi|344175451|emb|CCA88130.1| putative peptidase S54, rhomboid family [Ralstonia syzygii R24]
Length = 197
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHL 187
N L+ NV+V++A+ D LL LW + G F W+L T AFLHA++ HL
Sbjct: 2 INSLIVANVIVFVAELFAGDTLLRSFALWPPGAAGIGADGGFSPWQLVTYAFLHASVPHL 61
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ N + + G +E+ G R +Y +S +++
Sbjct: 62 VFNMFGMFMFGRDVERALGRARTGALYLASVLSA 95
>gi|119962891|ref|YP_945847.1| rhomboid family membrane protein [Arthrobacter aurescens TC1]
gi|403525113|ref|YP_006660000.1| rhomboid family membrane protein [Arthrobacter sp. Rue61a]
gi|119949750|gb|ABM08661.1| putative rhomboid family membrane protein [Arthrobacter aurescens
TC1]
gi|403227540|gb|AFR26962.1| putative rhomboid family membrane protein [Arthrobacter sp. Rue61a]
Length = 284
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 127 LFIGRQW-TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-- 183
L +GR T +++ + LVY+ Q+ + ++ + WR+ T+AFLH+
Sbjct: 72 LAVGRPLVTFVIIGLCALVYVLQWIVPGDAVFEDFAFANIFAVSEPWRMVTAAFLHSQGF 131
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ H+++N Y+L G +E + G R+L VY SAI +
Sbjct: 132 LLHIVLNMYTLWIFGQALEPLLGRIRFLAVYLISAIGGS 170
>gi|395238215|ref|ZP_10416153.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477919|emb|CCI86130.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 230
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
GQ+WRL T+ FLH I HL+ N + +G +E + G R+L VY S I N
Sbjct: 53 GQWWRLFTAQFLHIGIMHLVSNAVMIYYLGMFLEPLLGHIRFLAVYLISGIGGN 106
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T KL+ GA + + G++ RL TS FLH N H++ N SL G +E I G R
Sbjct: 182 TDLKLIDLGALAHFNVVHGEWHRLITSMFLHLNFEHILFNMLSLFIFGKLLESILGSWRM 241
Query: 211 LGVYFSSAIASN 222
GVY S I N
Sbjct: 242 FGVYMLSGIIGN 253
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
NI++ + +++Y+ +F + KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 6 INIVIWLCMILYLNRF-SDVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 64
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L G +E I G R L +Y S + N
Sbjct: 65 LFIFGKIVESIIGSWRMLIIYIISGLYGN 93
>gi|169796815|ref|YP_001714608.1| hypothetical protein ABAYE2805 [Acinetobacter baumannii AYE]
gi|213156792|ref|YP_002318453.1| rhomboid family protein [Acinetobacter baumannii AB0057]
gi|215484293|ref|YP_002326520.1| protein aarA [Acinetobacter baumannii AB307-0294]
gi|301346721|ref|ZP_07227462.1| Protein aarA [Acinetobacter baumannii AB056]
gi|301511811|ref|ZP_07237048.1| Protein aarA [Acinetobacter baumannii AB058]
gi|301596516|ref|ZP_07241524.1| Protein aarA [Acinetobacter baumannii AB059]
gi|417555059|ref|ZP_12206128.1| peptidase, S54 family [Acinetobacter baumannii Naval-81]
gi|417561186|ref|ZP_12212065.1| peptidase, S54 family [Acinetobacter baumannii OIFC137]
gi|417573815|ref|ZP_12224669.1| peptidase, S54 family [Acinetobacter baumannii Canada BC-5]
gi|421200790|ref|ZP_15657949.1| peptidase, S54 family [Acinetobacter baumannii OIFC109]
gi|421456487|ref|ZP_15905829.1| peptidase, S54 family [Acinetobacter baumannii IS-123]
gi|421620511|ref|ZP_16061443.1| peptidase, S54 family [Acinetobacter baumannii OIFC074]
gi|421635509|ref|ZP_16076111.1| peptidase, S54 family [Acinetobacter baumannii Naval-13]
gi|421643547|ref|ZP_16084041.1| peptidase, S54 family [Acinetobacter baumannii IS-235]
gi|421646202|ref|ZP_16086654.1| peptidase, S54 family [Acinetobacter baumannii IS-251]
gi|421658609|ref|ZP_16098840.1| peptidase, S54 family [Acinetobacter baumannii Naval-83]
gi|421700317|ref|ZP_16139834.1| peptidase, S54 family [Acinetobacter baumannii IS-58]
gi|421796126|ref|ZP_16232195.1| peptidase, S54 family [Acinetobacter baumannii Naval-21]
gi|421801828|ref|ZP_16237785.1| peptidase, S54 family [Acinetobacter baumannii Canada BC1]
gi|421805047|ref|ZP_16240941.1| peptidase, S54 family [Acinetobacter baumannii WC-A-694]
gi|169149742|emb|CAM87633.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|213055952|gb|ACJ40854.1| rhomboid family protein [Acinetobacter baumannii AB0057]
gi|213988445|gb|ACJ58744.1| Protein aarA [Acinetobacter baumannii AB307-0294]
gi|395523768|gb|EJG11857.1| peptidase, S54 family [Acinetobacter baumannii OIFC137]
gi|395562822|gb|EJG24475.1| peptidase, S54 family [Acinetobacter baumannii OIFC109]
gi|400209383|gb|EJO40353.1| peptidase, S54 family [Acinetobacter baumannii Canada BC-5]
gi|400210915|gb|EJO41879.1| peptidase, S54 family [Acinetobacter baumannii IS-123]
gi|400391476|gb|EJP58523.1| peptidase, S54 family [Acinetobacter baumannii Naval-81]
gi|404570699|gb|EKA75772.1| peptidase, S54 family [Acinetobacter baumannii IS-58]
gi|408508230|gb|EKK09916.1| peptidase, S54 family [Acinetobacter baumannii IS-235]
gi|408517589|gb|EKK19127.1| peptidase, S54 family [Acinetobacter baumannii IS-251]
gi|408700198|gb|EKL45661.1| peptidase, S54 family [Acinetobacter baumannii OIFC074]
gi|408702328|gb|EKL47741.1| peptidase, S54 family [Acinetobacter baumannii Naval-13]
gi|408709305|gb|EKL54551.1| peptidase, S54 family [Acinetobacter baumannii Naval-83]
gi|410400322|gb|EKP52501.1| peptidase, S54 family [Acinetobacter baumannii Naval-21]
gi|410405085|gb|EKP57138.1| peptidase, S54 family [Acinetobacter baumannii Canada BC1]
gi|410410097|gb|EKP62017.1| peptidase, S54 family [Acinetobacter baumannii WC-A-694]
Length = 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 134 TNILLAVNVLVYIAQF---------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T +L+++NV ++I Q A +D L WGA L GQ RL TS F H I
Sbjct: 21 TALLISINVGLFIWQIISGVDISDPAIKDALH-WGADFTPLTFSGQPERLFTSMFFHFGI 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HLM+N ++L G E + G ++G+Y + +
Sbjct: 80 IHLMLNMWALYIFGNVAEALFGRLYFIGLYLLAGL 114
>gi|93006714|ref|YP_581151.1| rhomboid-like protein [Psychrobacter cryohalolentis K5]
gi|92394392|gb|ABE75667.1| Rhomboid-like protein [Psychrobacter cryohalolentis K5]
Length = 348
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 128 FIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
FIG +L V+ A + + L+ WGA + WRL +SAFLH + HL
Sbjct: 20 FIGLFIMQVLTGVD-----ANNPSTEALIKWGANALPFTMDNEPWRLVSSAFLHIGLMHL 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ N +++ G E + G ++L ++ +AI N
Sbjct: 75 LFNGFAMYFFGQIAEPMFGSAKFLALFLLAAIGGN 109
>gi|108803986|ref|YP_643923.1| rhomboid-like protein [Rubrobacter xylanophilus DSM 9941]
gi|108765229|gb|ABG04111.1| Rhomboid-like protein [Rubrobacter xylanophilus DSM 9941]
Length = 209
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 146 IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKIC 205
+A ++L GA + + +G+ WRL TS FLHA HL +N SL +G E
Sbjct: 14 VALMTQPPEVLARGALVPLFVARGEVWRLLTSMFLHAGFIHLALNMLSLYFLGSFAETAF 73
Query: 206 GPRRYLGVYFSSAIASN 222
G R+ +Y S ++S
Sbjct: 74 GRLRFFALYMLSGLSSG 90
>gi|432763994|ref|ZP_19998444.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE48]
gi|431313102|gb|ELG01081.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE48]
Length = 625
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++ L++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSQLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +G E+I G R L + S +
Sbjct: 83 AFLVVGGVAEQILGKWRLLITWLFSGV 109
>gi|421661395|ref|ZP_16101571.1| peptidase, S54 family [Acinetobacter baumannii OIFC110]
gi|421694849|ref|ZP_16134466.1| peptidase, S54 family [Acinetobacter baumannii WC-692]
gi|421807457|ref|ZP_16243317.1| peptidase, S54 family [Acinetobacter baumannii OIFC035]
gi|404567084|gb|EKA72212.1| peptidase, S54 family [Acinetobacter baumannii WC-692]
gi|408715807|gb|EKL60929.1| peptidase, S54 family [Acinetobacter baumannii OIFC110]
gi|410416438|gb|EKP68210.1| peptidase, S54 family [Acinetobacter baumannii OIFC035]
Length = 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 134 TNILLAVNVLVYIAQF---------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T +L+++NV ++I Q A +D L WGA L GQ RL TS F H I
Sbjct: 21 TALLISINVGLFIWQIISGVDISDPAIKDALH-WGADFTPLTFSGQPERLFTSMFFHFGI 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HLM+N ++L G E + G ++G+Y + +
Sbjct: 80 IHLMLNMWALYIFGNVAEALFGRLYFIGLYLLAGL 114
>gi|358068283|ref|ZP_09154750.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
gi|356693542|gb|EHI55216.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
Length = 206
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 137 LLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVN 190
L+A+N++ + + D +L +GA+ + +G ++WRL TS F+H I H+ N
Sbjct: 12 LIALNIVFFLFLETVGSSEDADTMLRYGAEFTPYVIEGKEYWRLLTSMFMHFGIDHIANN 71
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
L IG +E+ G +YL Y I +N
Sbjct: 72 MIVLFMIGDNLERALGHVKYLIFYLICGIGAN 103
>gi|299470381|emb|CBN78430.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 403
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ GAK +LI +GQ WRL T LH + H+ +N S +G +E+ G R +L
Sbjct: 212 ETLMALGAKHLTLIQEGQVWRLLTPILLHGGVLHIFMNLTSQFRMGTFLEERWGTRNWLI 271
Query: 213 VYFSSAIASN 222
VY+ + N
Sbjct: 272 VYWVGGLGGN 281
>gi|417089411|ref|ZP_11955510.1| hypothetical protein SSUR61_0359 [Streptococcus suis R61]
gi|353534075|gb|EHC03710.1| hypothetical protein SSUR61_0359 [Streptococcus suis R61]
Length = 225
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 134 TNILLAVNVLVYI-------AQFATQDKLLLWGAKINSLI--DKGQFWRLATSAFLHANI 184
TN LLAV LV++ Q T + +G ++ D Q WRL + F+H
Sbjct: 12 TNSLLAVTALVFLLIQVFRFGQTTTAYTIFEFGGMYGQVVRYDPTQLWRLISPIFVHIGW 71
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
H + N +L +G +E++ G RR+ +Y S I N
Sbjct: 72 EHFLFNSITLLGLGYQLEELFGSRRFFLLYILSGIMGN 109
>gi|184157269|ref|YP_001845608.1| membrane protein [Acinetobacter baumannii ACICU]
gi|332872874|ref|ZP_08440838.1| peptidase, S54 family [Acinetobacter baumannii 6014059]
gi|384130934|ref|YP_005513546.1| hypothetical protein [Acinetobacter baumannii 1656-2]
gi|384142338|ref|YP_005525048.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236635|ref|YP_005797974.1| membrane protein [Acinetobacter baumannii TCDC-AB0715]
gi|387124827|ref|YP_006290709.1| hypothetical protein ABTJ_02823 [Acinetobacter baumannii MDR-TJ]
gi|407931966|ref|YP_006847609.1| hypothetical protein M3Q_1286 [Acinetobacter baumannii TYTH-1]
gi|416148138|ref|ZP_11602187.1| uncharacterized membrane protein [Acinetobacter baumannii AB210]
gi|417570438|ref|ZP_12221295.1| peptidase, S54 family [Acinetobacter baumannii OIFC189]
gi|417577494|ref|ZP_12228339.1| peptidase, S54 family [Acinetobacter baumannii Naval-17]
gi|417869278|ref|ZP_12514270.1| membrane protein [Acinetobacter baumannii ABNIH1]
gi|417872666|ref|ZP_12517561.1| membrane protein [Acinetobacter baumannii ABNIH2]
gi|417877087|ref|ZP_12521822.1| membrane protein [Acinetobacter baumannii ABNIH3]
gi|417880727|ref|ZP_12525196.1| membrane protein [Acinetobacter baumannii ABNIH4]
gi|421202388|ref|ZP_15659539.1| membrane protein [Acinetobacter baumannii AC12]
gi|421535507|ref|ZP_15981766.1| membrane protein [Acinetobacter baumannii AC30]
gi|421631178|ref|ZP_16071867.1| peptidase, S54 family [Acinetobacter baumannii OIFC180]
gi|421689219|ref|ZP_16128903.1| peptidase, S54 family [Acinetobacter baumannii IS-143]
gi|421702790|ref|ZP_16142266.1| hypothetical protein B825_06001 [Acinetobacter baumannii ZWS1122]
gi|421706540|ref|ZP_16145953.1| hypothetical protein B837_05711 [Acinetobacter baumannii ZWS1219]
gi|421792524|ref|ZP_16228677.1| peptidase, S54 family [Acinetobacter baumannii Naval-2]
gi|424053289|ref|ZP_17790821.1| hypothetical protein W9G_01978 [Acinetobacter baumannii Ab11111]
gi|424063049|ref|ZP_17800534.1| hypothetical protein W9M_00332 [Acinetobacter baumannii Ab44444]
gi|425752479|ref|ZP_18870386.1| peptidase, S54 family [Acinetobacter baumannii Naval-113]
gi|445466290|ref|ZP_21450269.1| peptidase, S54 family [Acinetobacter baumannii OIFC338]
gi|445475306|ref|ZP_21453308.1| peptidase, S54 family [Acinetobacter baumannii Naval-78]
gi|183208863|gb|ACC56261.1| uncharacterized membrane protein [Acinetobacter baumannii ACICU]
gi|322507154|gb|ADX02608.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
gi|323517133|gb|ADX91514.1| uncharacterized membrane protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332738885|gb|EGJ69748.1| peptidase, S54 family [Acinetobacter baumannii 6014059]
gi|333365145|gb|EGK47159.1| uncharacterized membrane protein [Acinetobacter baumannii AB210]
gi|342231049|gb|EGT95868.1| membrane protein [Acinetobacter baumannii ABNIH1]
gi|342233302|gb|EGT98041.1| membrane protein [Acinetobacter baumannii ABNIH2]
gi|342236447|gb|EGU00969.1| membrane protein [Acinetobacter baumannii ABNIH3]
gi|342239563|gb|EGU03962.1| membrane protein [Acinetobacter baumannii ABNIH4]
gi|347592831|gb|AEP05552.1| putative membrane protein [Acinetobacter baumannii MDR-ZJ06]
gi|385879319|gb|AFI96414.1| putative membrane protein [Acinetobacter baumannii MDR-TJ]
gi|395550886|gb|EJG16895.1| peptidase, S54 family [Acinetobacter baumannii OIFC189]
gi|395570715|gb|EJG31377.1| peptidase, S54 family [Acinetobacter baumannii Naval-17]
gi|398328343|gb|EJN44470.1| membrane protein [Acinetobacter baumannii AC12]
gi|404558599|gb|EKA63880.1| peptidase, S54 family [Acinetobacter baumannii IS-143]
gi|404669077|gb|EKB36984.1| hypothetical protein W9G_01978 [Acinetobacter baumannii Ab11111]
gi|404675051|gb|EKB42776.1| hypothetical protein W9M_00332 [Acinetobacter baumannii Ab44444]
gi|407193605|gb|EKE64761.1| hypothetical protein B825_06001 [Acinetobacter baumannii ZWS1122]
gi|407193889|gb|EKE65038.1| hypothetical protein B837_05711 [Acinetobacter baumannii ZWS1219]
gi|407900547|gb|AFU37378.1| hypothetical protein M3Q_1286 [Acinetobacter baumannii TYTH-1]
gi|408695344|gb|EKL40900.1| peptidase, S54 family [Acinetobacter baumannii OIFC180]
gi|409986349|gb|EKO42543.1| membrane protein [Acinetobacter baumannii AC30]
gi|410400104|gb|EKP52284.1| peptidase, S54 family [Acinetobacter baumannii Naval-2]
gi|425498710|gb|EKU64776.1| peptidase, S54 family [Acinetobacter baumannii Naval-113]
gi|444778101|gb|ELX02120.1| peptidase, S54 family [Acinetobacter baumannii OIFC338]
gi|444778970|gb|ELX02965.1| peptidase, S54 family [Acinetobacter baumannii Naval-78]
Length = 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 134 TNILLAVNVLVYIAQF---------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T +L+++NV ++I Q A +D L WGA L GQ RL TS F H I
Sbjct: 21 TALLISINVGLFIWQIISGVDISDPAIKDALH-WGADFTPLTFSGQPERLFTSMFFHFGI 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HLM+N ++L G E + G ++G+Y + +
Sbjct: 80 IHLMLNMWALYIFGNVAEALFGRLYFIGLYLLAGL 114
>gi|330924089|ref|XP_003300510.1| hypothetical protein PTT_11758 [Pyrenophora teres f. teres 0-1]
gi|311325347|gb|EFQ91395.1| hypothetical protein PTT_11758 [Pyrenophora teres f. teres 0-1]
Length = 545
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ Q+WR T FLHA I H+ N ++G MEK GP R+L VYFS+ I
Sbjct: 264 EPNQWWRFITPIFLHAGIIHIGFNMLLQWTLGRDMEKEIGPLRFLLVYFSAGI 316
>gi|257791201|ref|YP_003181807.1| rhomboid family protein [Eggerthella lenta DSM 2243]
gi|257475098|gb|ACV55418.1| Rhomboid family protein [Eggerthella lenta DSM 2243]
Length = 263
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKIN----SLIDKG-----------QFWRLA 175
R T L+A+NV A FA + +L G +I+ +L+D G +R
Sbjct: 40 RLVTLALIAINV----AVFALEA--VLSGMRIDISTRTLVDMGAMYAPLVQSPADLYRFV 93
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
T FLH ++ HL N +L S+G +E+ G YL +YF + I N
Sbjct: 94 TPMFLHMDLMHLGFNMVALYSVGEVLERTLGKGSYLALYFIAGITGN 140
>gi|378715572|ref|YP_005280461.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
gi|375750275|gb|AFA71095.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
Length = 302
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 78 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 137
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS 224
L VN SL +G +E G R++ VY ++ + + +
Sbjct: 138 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAA 175
>gi|333369428|ref|ZP_08461543.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
gi|332971152|gb|EGK10116.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
Length = 248
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL V +++ Q AT + LL WGA + WRL +S FLH +
Sbjct: 13 TALLLLSFVALFVIQVATGVDINQPSLEDLLKWGANALPYTIGYEPWRLVSSGFLHIGLM 72
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
HL+ NC+++ G E G ++L ++ S + N
Sbjct: 73 HLLFNCFAMYYFGQVAEVTFGSVKFLLLFLLSTVGGN 109
>gi|239502982|ref|ZP_04662292.1| hypothetical protein AbauAB_11789 [Acinetobacter baumannii AB900]
gi|421674977|ref|ZP_16114903.1| peptidase, S54 family [Acinetobacter baumannii OIFC065]
gi|421679834|ref|ZP_16119702.1| peptidase, S54 family [Acinetobacter baumannii OIFC111]
gi|421690873|ref|ZP_16130539.1| peptidase, S54 family [Acinetobacter baumannii IS-116]
gi|421786403|ref|ZP_16222806.1| peptidase, S54 family [Acinetobacter baumannii Naval-82]
gi|404563770|gb|EKA68970.1| peptidase, S54 family [Acinetobacter baumannii IS-116]
gi|410382992|gb|EKP35526.1| peptidase, S54 family [Acinetobacter baumannii OIFC065]
gi|410390653|gb|EKP43036.1| peptidase, S54 family [Acinetobacter baumannii OIFC111]
gi|410412881|gb|EKP64729.1| peptidase, S54 family [Acinetobacter baumannii Naval-82]
Length = 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 134 TNILLAVNVLVYIAQF---------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T +L+++NV ++I Q A +D L WGA L GQ RL TS F H I
Sbjct: 21 TALLISINVGLFIWQIISGVDISDPAIKDALH-WGADFTPLTFSGQPERLFTSMFFHFGI 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
HLM+N ++L G E + G ++G+Y + +
Sbjct: 80 IHLMLNMWALYIFGNVAEALFGRLYFIGLYLLAGL 114
>gi|407980116|ref|ZP_11160914.1| serine peptidase [Bacillus sp. HYC-10]
gi|407413170|gb|EKF34898.1| serine peptidase [Bacillus sp. HYC-10]
Length = 201
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
QD L N + G++WRL T FLH ++ H++ N SL P +E + G R+L
Sbjct: 43 QDHL----VGFNYGVAAGEWWRLVTPIFLHGSLTHILFNSMSLFLFAPALESLLGKVRFL 98
Query: 212 GVYFSSAIASN 222
+Y + N
Sbjct: 99 LIYIGAGFIGN 109
>gi|52078997|ref|YP_077788.1| hypothetical protein BL02214 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648699|ref|ZP_08002910.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|404487870|ref|YP_006711976.1| transmembrane protein YdcA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680901|ref|ZP_17655740.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
gi|52002208|gb|AAU22150.1| conserved membrane protein YdcA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52346871|gb|AAU39505.1| putative transmembrane protein YdcA [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317389118|gb|EFV69934.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|383442007|gb|EID49716.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
Length = 199
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
I G++WR T F+HA HL+ N S+ P +E++ G ++L VY + + N
Sbjct: 53 IANGEWWRFVTPIFIHAGFGHLLFNSMSIFLFAPGLERMLGKLKFLIVYIGAGVIGN 109
>gi|427724622|ref|YP_007071899.1| rhomboid family protein [Leptolyngbya sp. PCC 7376]
gi|427356342|gb|AFY39065.1| Rhomboid family protein [Leptolyngbya sp. PCC 7376]
Length = 556
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 137 LLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ VN+ V+I+ K LL + S + G++WR+ T+ F+H + HL+ N
Sbjct: 343 LVFVNIAVFISGIVLNFKVNRGALLDLAGFVPSEVINGEWWRIITATFIHIDWGHLLTNI 402
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+L +G +E+ G RYL +Y +S + +
Sbjct: 403 LTLYLLGGFVERNLGKTRYLFIYIASGVGA 432
>gi|194016002|ref|ZP_03054617.1| conserved membrane protein YdcA [Bacillus pumilus ATCC 7061]
gi|194012357|gb|EDW21924.1| conserved membrane protein YdcA [Bacillus pumilus ATCC 7061]
Length = 201
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + G++WRL T FLH ++ H++ N SL P +E + G R+L +Y + N
Sbjct: 50 NYGVATGEWWRLVTPIFLHGSLTHILFNSMSLFLFAPALEHLLGKVRFLIIYLGAGFIGN 109
>gi|407478437|ref|YP_006792314.1| rhomboid family protein [Exiguobacterium antarcticum B7]
gi|407062516|gb|AFS71706.1| Rhomboid family protein [Exiguobacterium antarcticum B7]
Length = 248
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L +GA IN I G++WR+ T+ FLH + H+ N ++L P +E++ G ++ Y
Sbjct: 45 LSYGAAINLFIGNGEWWRVVTATFLHYDFWHIAFNTFALIIFAPALERMIGHAKFASFY 103
>gi|359419226|ref|ZP_09211185.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
gi|358244841|dbj|GAB09254.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
Length = 218
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
++WRL TS FLH +I H+ VN SL +G +E I G R+L VY +
Sbjct: 41 EYWRLLTSGFLHLSIMHIAVNMISLVLLGTIIEPILGTARFLLVYLVA 88
>gi|237843485|ref|XP_002371040.1| rhomboid family domain-containing protein [Toxoplasma gondii ME49]
gi|50845220|gb|AAT84607.1| rhomboid protease 3 [Toxoplasma gondii]
gi|211968704|gb|EEB03900.1| rhomboid family domain-containing protein [Toxoplasma gondii ME49]
Length = 263
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNV---LVYIAQFA-------TQDKLLLWGAKIN 163
+ G L + + +F G W ++ + V ++YI + L+L GA
Sbjct: 16 NSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLSRSYEPNERTLMLLGAAYA 75
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
Q WR+ T FLHA I HL++N + I +E+ G +++L YF SAI N
Sbjct: 76 PAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGN 134
>gi|309808584|ref|ZP_07702478.1| peptidase, S54 family [Lactobacillus iners LactinV 01V1-a]
gi|308168180|gb|EFO70304.1| peptidase, S54 family [Lactobacillus iners LactinV 01V1-a]
Length = 182
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+++ K QFWRL T+ F+HA H++ N + G +E+ G RYL +Y S + N
Sbjct: 5 AVVTKLQFWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGN 63
>gi|153853648|ref|ZP_01995028.1| hypothetical protein DORLON_01019 [Dorea longicatena DSM 13814]
gi|149753803|gb|EDM63734.1| peptidase, S54 family [Dorea longicatena DSM 13814]
Length = 204
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 134 TNILLAVNVLVYIA-QF--ATQDK--LLLWGAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T +L AVNV+V++ F T+D +L GA + LI +G+++RL +S FLH HL
Sbjct: 11 TILLAAVNVIVFLVLSFLGMTEDGEFMLKHGAMYVPYLIQRGEYYRLFSSMFLHFGYDHL 70
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+ N L ++G +E G ++L VYF S +A N
Sbjct: 71 VNNMIVLVAMGWNLELDIGKVKFLIVYFVSGLAGN 105
>gi|157691227|ref|YP_001485689.1| serine peptidase [Bacillus pumilus SAFR-032]
gi|157679985|gb|ABV61129.1| possible S54 family unassigned serine peptidase [Bacillus pumilus
SAFR-032]
Length = 201
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
N + G++WRL T FLH ++ H++ N SL P +E + G R+L +Y + N
Sbjct: 50 NYGVAAGEWWRLITPVFLHGSLTHILFNSMSLFLFAPALEHLLGKVRFLIIYLGAGFIGN 109
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,429,673,655
Number of Sequences: 23463169
Number of extensions: 130783633
Number of successful extensions: 330854
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2629
Number of HSP's successfully gapped in prelim test: 622
Number of HSP's that attempted gapping in prelim test: 327868
Number of HSP's gapped (non-prelim): 3305
length of query: 224
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 87
effective length of database: 9,144,741,214
effective search space: 795592485618
effective search space used: 795592485618
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)