BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027362
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site
Mutant, S201t In Trigonal Crystal Form
Length = 181
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG 96
>pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
pdb|2IRV|B Chain B, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
Length = 182
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 6 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 66 WWWYLGGAVEKRLGSGKLIVITLISALLSG 95
>pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native
Enzyme
Length = 181
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG 96
>pdb|2IC8|A Chain A, Crystal Structure Of Glpg
pdb|2NRF|A Chain A, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
pdb|2NRF|B Chain B, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
pdb|3UBB|A Chain A, The Crystal Structure Of Glpg In Complex With A
Phosphonofluoridate Inhibitor
Length = 182
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG 96
>pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution
Length = 180
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG 96
>pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based
Isocoumarin Inhibitor
pdb|3TXT|A Chain A, Crystal Structure Of Glpg In Complex With Inhibitor Dfp
pdb|3ZEB|A Chain A, A Complex Of Glpg With Isocoumarin Inhibitor Covalently
Bonded To Serine 201 And Histidine 150
Length = 179
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 6 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 66 WWWYLGGAVEKRLGSGKLIVITLISALLSG 95
>pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site
Mutant, S201t, Orthorhombic Crystal Form
Length = 180
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 5 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 65 WWWYLGGAVEKRLGSGKLIVITLISALLSG 94
>pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg
Length = 180
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 5 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 65 WWWYLGGAVEKRLGSGKLIVITLISALLSG 94
>pdb|3B44|A Chain A, Crystal Structure Of Glpg W136a Mutant
Length = 180
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +F R T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFARYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
+G +EK G + + + SA+ S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG 96
>pdb|2JRZ|A Chain A, Solution Structure Of The BrightARID DOMAIN FROM THE HUMAN
Jarid1c Protein
Length = 117
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPT---MEKICGPRRYLGV 213
K+N L +FW + S+ N+ +++ YSL+ I E IC RR+ V
Sbjct: 11 VKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARV 67
>pdb|2YQE|A Chain A, Solution Structure Of The Arid Domain Of Jarid1d Protein
Length = 100
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSI---GPTMEKICGPRRYLGV 213
K+N L +FW + S+ N+ +++ YSL+ I E IC RR+ V
Sbjct: 10 VKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARV 66
>pdb|2NR9|A Chain A, Crystal Structure Of Glpg, Rhomboid Peptidase From
Haemophilus Influenzae
pdb|3ODJ|A Chain A, Crystal Structure Of H. Influenzae Rhomboid Glpg With
Disordered Loop 4, Helix 5 And Loop 5
Length = 196
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 134 TNILLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T IL A+ VL+YIAQ +D ++ + WR + +H + H++ N
Sbjct: 12 TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 71
Query: 193 SLNSIGPTMEKICGPRRYLGVY-FSSAI 219
G +E+ G + L +Y +SAI
Sbjct: 72 WFFIFGGMIERTFGSVKLLMLYVVASAI 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,756,165
Number of Sequences: 62578
Number of extensions: 190253
Number of successful extensions: 727
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 12
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)