Query 027362
Match_columns 224
No_of_seqs 169 out of 1306
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr9_A Protein GLPG homolog; i 99.8 2.5E-19 8.5E-24 151.1 9.4 95 129-223 7-102 (196)
2 2xov_A Rhomboid protease GLPG; 99.8 6.8E-19 2.3E-23 146.6 9.4 94 130-223 3-97 (181)
3 2cxa_A Leucyl/phenylalanyl-tRN 18.8 29 0.00098 30.3 0.4 61 14-78 70-130 (256)
4 3arc_J Photosystem II reaction 10.2 94 0.0032 19.5 0.9 16 19-34 4-19 (40)
5 2hfr_A Fowlicidin-3, cathelici 6.8 1.5E+02 0.0051 16.8 0.7 20 23-42 7-26 (27)
6 2gqc_A Rhomboid intramembrane 6.0 1.6E+02 0.0055 19.9 0.7 22 75-96 40-66 (70)
7 3vr8_C Cytochrome B-large subu 4.8 3.3E+02 0.011 22.2 2.0 20 172-191 122-143 (188)
8 2zvk_U DNA polymerase ETA, pro 4.7 1.9E+02 0.0065 16.4 0.3 14 54-67 10-23 (26)
9 3hr5_R M1prime-derived peptide 4.5 2.9E+02 0.0099 16.4 1.0 10 5-14 24-33 (35)
10 2ccq_A P97, peptide N-glycanas 3.4 2.5E+02 0.0087 20.4 0.1 13 87-99 31-43 (99)
No 1
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.79 E-value=2.5e-19 Score=151.12 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHhchH-HHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhch
Q 027362 129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207 (224)
Q Consensus 129 ~~~pvT~~LI~inv~vFil~~~~~~-~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs 207 (224)
+..|+|..++++|+++|+++...++ ....+....+..+..+||||++|++|+|.|+.|+++||+++|.+|..+|+.+|+
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~ 86 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS 86 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 4468999999999999999876543 333433334434578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 027362 208 RRYLGVYFSSAIASNN 223 (224)
Q Consensus 208 ~rfl~lYL~Sgl~gsl 223 (224)
++|+.+|++++++|++
T Consensus 87 ~~~l~~yl~~~~~~~l 102 (196)
T 2nr9_A 87 VKLLMLYVVASAITGY 102 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 2
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.77 E-value=6.8e-19 Score=146.61 Aligned_cols=94 Identities=27% Similarity=0.357 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhchH-HHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchH
Q 027362 130 GRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208 (224)
Q Consensus 130 ~~pvT~~LI~inv~vFil~~~~~~-~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~ 208 (224)
..|+|..++++|+++|+++...++ ....+....+..+.++|+||++|++|+|.|+.|+++||+++|.+|+.+|+.+|++
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~ 82 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG 82 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 358999999999999999866543 3333333334345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 027362 209 RYLGVYFSSAIASNN 223 (224)
Q Consensus 209 rfl~lYL~Sgl~gsl 223 (224)
+|+.+|+++++++++
T Consensus 83 ~fl~~yl~~~i~~~l 97 (181)
T 2xov_A 83 KLIVITLISALLSGY 97 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 3
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=18.76 E-value=29 Score=30.27 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=40.5
Q ss_pred CCCccccCCCcchhhhhhhhcchhhhhhhhhcccCcchhhhhhhccccccccccCCCCCCccccc
Q 027362 14 REPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCE 78 (224)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 78 (224)
.+|+.|..|.|=-|+-. ..+|+++|+||.+.... +..-+-..|.+|-..|..||-.++|-.
T Consensus 70 ~~pilWwsP~pR~Vl~p-~~~hisrSLrk~lr~~~---f~vt~n~aF~~VI~~Ca~~R~~gTWI~ 130 (256)
T 2cxa_A 70 GDPILWWSPDPRAVLWP-ESLHISRSMKRFHKRSP---YRVTMNYAFGQVIEGCASDREEGTWIT 130 (256)
T ss_dssp TSCCEEECCSSEEEECG-GGCCCCHHHHHHHHTCC---CEEEESSCHHHHHHHHHTC---CTTCC
T ss_pred CCccceECCCCCEEecc-ccccCCHHHHHHHCCCC---eEEEEcCcHHHHHHHhcCCCCCCCCCC
Confidence 47898889998777765 68999999998732211 112344567777777766765678974
No 4
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=10.22 E-value=94 Score=19.52 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=13.5
Q ss_pred ccCCCcchhhhhhhhc
Q 027362 19 WLTRPPLNLITTTAKH 34 (224)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (224)
..++-|+-+|+|+++.
T Consensus 4 ~tGRiPLWlvgtv~G~ 19 (40)
T 3arc_J 4 EGGRIPLWIVATVAGM 19 (40)
T ss_dssp CTTSSCHHHHHHHHHH
T ss_pred CcCcccEEeeeeehhh
Confidence 3578899999999986
No 5
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=6.78 E-value=1.5e+02 Score=16.80 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=15.1
Q ss_pred Ccchhhhhhhhcchhhhhhh
Q 027362 23 PPLNLITTTAKHSLSVSLSR 42 (224)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (224)
.|..+.+++|+..+-.+.||
T Consensus 7 vpvaintvaaginlykairr 26 (27)
T 2hfr_A 7 VPVAINTVAAGINLYKAIRR 26 (27)
T ss_dssp SSSHHHHHHHHHTSTTTTTC
T ss_pred CcceEEEeehhhhHHHHHhc
Confidence 46778888899877776665
No 6
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=5.99 E-value=1.6e+02 Score=19.94 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=15.1
Q ss_pred cccccccccc-----cccccccCCccc
Q 027362 75 QWCENAFRFN-----GVNFFRFTNDAF 96 (224)
Q Consensus 75 ~w~~~~~~~~-----~~~fl~~p~~~~ 96 (224)
.|.....+.. -.+|+++|+|++
T Consensus 40 Lwl~d~~~~~~a~~el~~F~~~P~~~~ 66 (70)
T 2gqc_A 40 LWVPDERLAEQVRELYRRYPEGDPQAT 66 (70)
T ss_dssp EECCCSSHHHHHHHHHTTSSSTTTTSC
T ss_pred EEEcCHHHHHHHHHHHHHHHhCCCccc
Confidence 5765544433 358999999988
No 7
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=4.82 E-value=3.3e+02 Score=22.24 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=12.8
Q ss_pred ceeeecccccC--cHHHHHHHH
Q 027362 172 WRLATSAFLHA--NIAHLMVNC 191 (224)
Q Consensus 172 WRLiTs~FlH~--~~lHLlfNm 191 (224)
|-+..+.+.|. |+-||+..+
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 34445555564 788988775
No 8
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=4.69 E-value=1.9e+02 Score=16.39 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=10.9
Q ss_pred hhhhcccccccccc
Q 027362 54 RLLHSSVKKLSRLC 67 (224)
Q Consensus 54 ~~~~~~~~~~~~~~ 67 (224)
.-|.|-||+|+|..
T Consensus 10 ~TLesFFK~L~~~~ 23 (26)
T 2zvk_U 10 QTLESFFKPLTHXX 23 (26)
T ss_pred ccHHHHhccCCccc
Confidence 36888999998854
No 9
>3hr5_R M1prime-derived peptide; FAB-peptide complex, immune system; 2.40A {Mus musculus}
Probab=4.52 E-value=2.9e+02 Score=16.35 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=7.4
Q ss_pred cCCCCCCCCC
Q 027362 5 ASGRALPHHR 14 (224)
Q Consensus 5 ~~~~~~~~~~ 14 (224)
|.|-++|+|+
T Consensus 24 aaggsvphpr 33 (35)
T 3hr5_R 24 AAGGSVPHPR 33 (35)
T ss_pred ccCCCCCCCC
Confidence 5677888875
No 10
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=3.37 E-value=2.5e+02 Score=20.36 Aligned_cols=13 Identities=38% Similarity=0.348 Sum_probs=10.5
Q ss_pred cccccCCccccee
Q 027362 87 NFFRFTNDAFASS 99 (224)
Q Consensus 87 ~fl~~p~~~~~~~ 99 (224)
|.+++|+|+||..
T Consensus 31 Nil~~P~e~KyR~ 43 (99)
T 2ccq_A 31 NILRNPNDEKYRS 43 (99)
T ss_dssp HHHHCTTCGGGGE
T ss_pred HHHcCCCCcccce
Confidence 5678999999983
Done!