BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027365
MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCR
SSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND
DKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSVYQRYATYLDAFGPDESYLRK
KVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA

High Scoring Gene Products

Symbol, full name Information P value
SDH5
AT1G47420 		protein from Arabidopsis thaliana 9.9e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027365
        (224 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2015428 - symbol:SDH5 "AT1G47420" species:3702...   330  9.9e-58   2


>TAIR|locus:2015428 [details] [associations]
            symbol:SDH5 "AT1G47420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005749
            "mitochondrial respiratory chain complex II" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC007519
            GO:GO:0005749 EMBL:AF344326 EMBL:AY054563 EMBL:AY034947
            EMBL:AY062990 EMBL:BT000345 EMBL:AY084381 IPI:IPI00532651
            PIR:H96514 RefSeq:NP_564506.1 UniGene:At.11510 UniGene:At.66924
            ProteinModelPortal:Q9SX77 SMR:Q9SX77 IntAct:Q9SX77 STRING:Q9SX77
            PaxDb:Q9SX77 PRIDE:Q9SX77 EnsemblPlants:AT1G47420.1 GeneID:841147
            KEGG:ath:AT1G47420 GeneFarm:1938 TAIR:At1g47420 eggNOG:NOG254985
            HOGENOM:HOG000240794 InParanoid:Q9SX77 OMA:MELGTKM PhylomeDB:Q9SX77
            ProtClustDB:PLN02749 BioCyc:ARA:AT1G47420-MONOMER
            BioCyc:MetaCyc:AT1G47420-MONOMER Genevestigator:Q9SX77
            GermOnline:AT1G47420 InterPro:IPR025397 Pfam:PF14290 Uniprot:Q9SX77
        Length = 257

 Score = 330 (121.2 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 64/102 (62%), Positives = 79/102 (77%)

Query:    58 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
             D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+
Sbjct:    74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISK 133

Query:   118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS 159
             N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+S
Sbjct:   134 NTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMS 175

 Score = 281 (104.0 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 53/66 (80%), Positives = 60/66 (90%)

Query:   159 SVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGS 218
             + YQRYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GS
Sbjct:   192 TAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGS 251

Query:   219 YVEQRA 224
             YVEQRA
Sbjct:   252 YVEQRA 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       196   0.00080  111 3  11 22  0.45    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  154 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.54u 0.13s 16.67t   Elapsed:  00:00:01
  Total cpu time:  16.54u 0.13s 16.67t   Elapsed:  00:00:01
  Start:  Mon May 20 22:18:56 2013   End:  Mon May 20 22:18:57 2013

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