Query 027365
Match_columns 224
No_of_seqs 16 out of 18
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 14:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rbl_M Ribulose 1,5 bisphospha 60.4 6.3 0.00022 30.5 3.1 31 69-100 7-37 (109)
2 1bwv_S Rubisco, protein (ribul 60.4 6.3 0.00022 31.8 3.2 31 71-101 2-32 (138)
3 1svd_M Ribulose bisphosphate c 60.3 5.8 0.0002 30.7 2.8 32 69-101 9-40 (110)
4 1wdd_S Ribulose bisphosphate c 58.3 6.3 0.00021 31.5 2.8 29 71-100 10-38 (128)
5 1bxn_I Rubisco, protein (ribul 57.6 6.8 0.00023 31.6 2.9 31 71-101 2-32 (139)
6 1gk8_I Ribulose bisphosphate c 53.8 8.2 0.00028 31.3 2.8 30 71-101 10-39 (140)
7 4f0h_B Ribulose bisphosphate c 49.1 12 0.00043 30.2 3.2 31 71-101 2-32 (138)
8 1syy_A Ribonucleoside-diphosph 38.3 1.9E+02 0.0065 24.8 10.5 96 78-175 29-138 (346)
9 3zxw_B Ribulose bisphosphate c 38.0 17 0.0006 28.5 2.3 49 70-119 7-81 (118)
10 3r84_A Mediator of RNA polymer 34.7 21 0.00073 26.7 2.3 48 109-158 22-76 (86)
11 1ka2_A M32 carboxypeptidase; h 33.2 32 0.0011 32.1 3.6 63 102-175 99-167 (499)
12 1deq_A Fibrinogen (alpha chain 31.6 49 0.0017 30.7 4.6 32 162-194 109-140 (390)
13 2r9i_A Putative phage capsid p 30.5 72 0.0025 25.9 4.8 45 92-148 6-50 (141)
14 1wnd_A Putative betaine aldehy 30.3 25 0.00084 31.6 2.3 46 75-120 49-100 (495)
15 3lns_A Benzaldehyde dehydrogen 28.2 81 0.0028 27.7 5.2 49 74-122 16-70 (457)
16 1h6g_A Alpha-1 catenin; adhesi 27.1 74 0.0025 26.4 4.5 49 82-130 186-237 (256)
17 4flb_A Regulation of nuclear P 26.9 27 0.00091 25.6 1.6 35 83-118 94-131 (132)
18 1r42_A Angiotensin I convertin 26.2 2.5E+02 0.0085 25.6 8.2 92 82-175 87-211 (615)
19 3fsp_A A/G-specific adenine gl 25.4 1.1E+02 0.0038 26.1 5.4 54 80-133 8-66 (369)
20 3kxa_A NGO0477 protein, putati 25.0 1.5E+02 0.005 22.1 5.5 59 127-185 55-134 (141)
21 3fhf_A Mjogg, N-glycosylase/DN 25.0 1.6E+02 0.0053 24.2 6.1 50 83-132 17-70 (214)
22 2zzv_A ABC transporter, solute 24.8 90 0.0031 25.9 4.7 14 160-173 337-350 (361)
23 2rq5_A Protein jumonji; develo 24.3 53 0.0018 25.1 2.9 56 130-185 43-111 (121)
24 3iwj_A Putative aminoaldehyde 24.0 1.3E+02 0.0045 26.8 5.9 74 75-148 34-128 (503)
25 3zrg_A Pexrd2, pexrd2 family s 23.3 80 0.0027 23.0 3.5 28 128-169 32-59 (67)
26 2epj_A Glutamate-1-semialdehyd 22.9 2.1E+02 0.0071 23.4 6.4 55 84-138 73-135 (434)
27 2w4s_A Ankyrin-repeat protein; 22.2 33 0.0011 26.7 1.4 44 103-146 6-56 (113)
28 2bsq_E FITA, trafficking prote 21.4 1E+02 0.0035 22.1 3.8 41 85-125 9-49 (77)
29 2guz_B Mitochondrial import in 21.4 60 0.0021 22.4 2.5 35 83-117 19-58 (65)
30 3id6_A NOP5, PRE mRNA splicing 21.1 1.6E+02 0.0055 25.4 5.6 64 78-141 167-243 (268)
31 3icx_A PRE mRNA splicing prote 21.0 2.9E+02 0.01 23.8 7.2 44 102-145 71-114 (255)
32 3hq2_A Bacillus subtilis M32 c 20.6 69 0.0024 30.1 3.4 63 102-175 97-165 (501)
33 2es4_D Lipase chaperone; prote 20.2 2.8E+02 0.0097 24.3 7.1 38 83-120 80-117 (332)
No 1
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=60.43 E-value=6.3 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=26.4
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 027365 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (224)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW 100 (224)
..|.|- ..+.||+++|.+|.+-+.-|++-.|
T Consensus 7 ~~~~~e-tfSyLP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 7 KERRFE-TFSYLPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp CCCCCS-TTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred Cccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 345554 7999999999999999999998766
No 2
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=60.39 E-value=6.3 Score=31.79 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.4
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027365 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (224)
Q Consensus 71 R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW~ 101 (224)
|.--+..+.||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~Yll~qGw~ 32 (138)
T 1bwv_S 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCCe
Confidence 4444678999999999999999999998773
No 3
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=60.28 E-value=5.8 Score=30.74 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=26.9
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027365 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (224)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW~ 101 (224)
..|.|- ..+.||+++|.+|.+-+.-|++-.|.
T Consensus 9 ~~~~~e-tfSyLP~lt~eqI~kQV~Yll~qGw~ 40 (110)
T 1svd_M 9 QSLKYE-TFSYLPPMNAERIRAQIKYAIAQGWS 40 (110)
T ss_dssp CCCCCS-TTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred CCcccc-ccccCCCCCHHHHHHHHHHHHHCCCe
Confidence 345554 79999999999999999999987763
No 4
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=58.29 E-value=6.3 Score=31.45 Aligned_cols=29 Identities=14% Similarity=0.533 Sum_probs=25.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 027365 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (224)
Q Consensus 71 R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW 100 (224)
|.|- ..+.||+++|.+|.+-+..|++-.|
T Consensus 10 ~~~~-tfSyLP~lt~eqI~kQI~Yll~qGw 38 (128)
T 1wdd_S 10 KKFE-TLSYLPPLTVEDLLKQIEYLLRSKW 38 (128)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 4454 6999999999999999999998666
No 5
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=57.61 E-value=6.8 Score=31.64 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=26.3
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027365 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (224)
Q Consensus 71 R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW~ 101 (224)
|.--+..+.||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~YlL~qGw~ 32 (139)
T 1bxn_I 2 RITQGTFSFLPELTDEQITKQLEYCLNQGWA 32 (139)
T ss_dssp CCCCSBTTTSSCCCHHHHHHHHHHHHHHTCE
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCCe
Confidence 4444678999999999999999999997763
No 6
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=53.77 E-value=8.2 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027365 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (224)
Q Consensus 71 R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW~ 101 (224)
|.|- ..+.||+++|.+|.+-+.-|++-.|.
T Consensus 10 ~~~e-tfSyLP~lt~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 10 KMFE-TFSYLPPLTDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred ceec-ccccCCCCCHHHHHHHHHHHHHCCCE
Confidence 4454 69999999999999999999988774
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=49.06 E-value=12 Score=30.15 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027365 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (224)
Q Consensus 71 R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW~ 101 (224)
|.=-+..+-||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~t~~tfSyLP~ltd~qI~kQI~YlL~qGw~ 32 (138)
T 4f0h_B 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHhCCCE
Confidence 3334577899999999999999999998773
No 8
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=38.31 E-value=1.9e+02 Score=24.76 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhc-ccCCchhHHHHHHHHHHHHHHHHHHHH-HH-HHHhhhhhh
Q 027365 78 AHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALS-RNNDDKAGQEVLKNVFSAAEAVEEFIG-II-MNIKMEFDD 154 (224)
Q Consensus 78 ~hlP~i~Dp~i~~afKdLmA~sW~elp~svv~~ak~alS-k~tdDkaGqeaL~nvfrAAeAvEeFgG-iL-~~LrmeiDD 154 (224)
-.+-.|+-|++.+..+...+.-|..=.=.+-+|.+.--+ +-+ ..-|.++++++..--+.+..=| .+ ..|...+.+
T Consensus 29 ~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~~~Lt--~~Er~~~~~~l~~~~~~D~iv~~~~~~~l~~~v~~ 106 (346)
T 1syy_A 29 NQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLS--EDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTN 106 (346)
T ss_dssp TCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred ceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhhccCC--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc
Confidence 346789999999999999999997544445667664432 323 3458899998876555444333 22 223333332
Q ss_pred ccc---hh-------HH-HHHHHHHhhcCCCh
Q 027365 155 EIG---LS-------VY-QRYATYLDAFGPDE 175 (224)
Q Consensus 155 l~G---ls-------ay-~rY~~YLdsFgpdE 175 (224)
-=. ++ .| +=|..+|++++.++
T Consensus 107 ~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~ 138 (346)
T 1syy_A 107 PEARQYLLRQAFEEAVHTHTFLYICESLGLDE 138 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 111 11 34 44777899999886
No 9
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=37.99 E-value=17 Score=28.45 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=33.0
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccC
Q 027365 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNN 119 (224)
Q Consensus 70 ~R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW-----------------~--elp-------~svv~~ak~alSk~t 119 (224)
.|.| |+.+-||+++|.+|.+-..-|++-.| + .|| +.|+.+++.|++...
T Consensus 7 ~kkf-eTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p 81 (118)
T 3zxw_B 7 ERRY-ETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYP 81 (118)
T ss_dssp --------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCT
T ss_pred Cccc-cccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCC
Confidence 3556 68999999999999999999998655 3 565 557777777766543
No 10
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=34.67 E-value=21 Score=26.67 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=30.4
Q ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHH----HHhhh---hhhccch
Q 027365 109 HDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIM----NIKME---FDDEIGL 158 (224)
Q Consensus 109 ~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeFgGiL~----~Lrme---iDDl~Gl 158 (224)
..|-.++..-+..|.|-+++|..|. +++.+|...|. .||.| +||.+|-
T Consensus 22 ~~as~~i~tls~~k~~~~~~K~~F~--~~t~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 22 QEASQVTFIFGELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHhhcccCCcHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444444444445555577777775 67888988774 57766 5777774
No 11
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A
Probab=33.16 E-value=32 Score=32.10 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=45.0
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhccchhHHHHHHHHHhhcCCCh
Q 027365 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG------IIMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175 (224)
Q Consensus 102 elp~svv~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeFgG------iL~~LrmeiDDl~Glsay~rY~~YLdsFgpdE 175 (224)
.||..++.+.-++-|+ -.++|+.|++-.-|.+ .++.|+.|+-+..|-.. ..|-+-||.|+|+-
T Consensus 99 ~iP~~l~~~~~~~~s~----------~~~~W~~ar~~~Df~~f~p~L~~vv~l~re~A~~~~~~~-~~YDaLLd~yEpg~ 167 (499)
T 1ka2_A 99 AFPPEFIREVSETTSL----------ATKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEE-EPYDALLDLYEEGL 167 (499)
T ss_dssp HSCHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGTHHHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHH----------HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHhCCCC
Confidence 3566555555554444 3678999988777776 36677777777776656 67999999998864
No 12
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.56 E-value=49 Score=30.72 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhh
Q 027365 162 QRYATYLDAFGPDESYLRKKVETELGSKMIFLK 194 (224)
Q Consensus 162 ~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LK 194 (224)
.+|..|.+...-.=.|||+||++.|= .|-.|+
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq 140 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 46777777777888999999999886 554444
No 13
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=30.45 E-value=72 Score=25.94 Aligned_cols=45 Identities=40% Similarity=0.461 Sum_probs=31.3
Q ss_pred HHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027365 92 FKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (224)
Q Consensus 92 fKdLmA~sW~elp~svv~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeFgGiL~~L 148 (224)
+|||+|.. +.+...+|.+-|.-|||-.-- .||+|||..-.|+..+
T Consensus 6 lkdllahr-----enlmdsakrarsaitddmdpa-------daaqavenvksiisei 50 (141)
T 2r9i_A 6 LKDLLAHR-----ENLMDSAKRARSAITDDMDPA-------DAAQAVENVKSIISEI 50 (141)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHCCTTSCHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHhhhccCCChH-------HHHHHHHHHHHHHHHH
Confidence 68888864 567788899999889886433 3566666666655544
No 14
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=30.33 E-value=25 Score=31.63 Aligned_cols=46 Identities=13% Similarity=0.319 Sum_probs=30.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCC
Q 027365 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNND 120 (224)
Q Consensus 75 ~d~~hlP~i~Dp~i~~afKdLmA~--sW~elp~s----vv~~ak~alSk~td 120 (224)
+-+.++|.....++..|++..-++ .|..+|.. ++..+...|.++.|
T Consensus 49 ~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 100 (495)
T 1wnd_A 49 DVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQ 100 (495)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888776654 69999865 34444445554433
No 15
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=28.22 E-value=81 Score=27.69 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=29.3
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCch
Q 027365 74 SEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDK 122 (224)
Q Consensus 74 S~d~~hlP~i~Dp~i~~afKdLmA~--sW~elp~s----vv~~ak~alSk~tdDk 122 (224)
++.+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.
T Consensus 16 ~~~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 70 (457)
T 3lns_A 16 DDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEAL 70 (457)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCeeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 4678899999999999988877654 69999865 3444555555544443
No 16
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=27.07 E-value=74 Score=26.44 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhh---hcccCCchhHHHHHHH
Q 027365 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSA---LSRNNDDKAGQEVLKN 130 (224)
Q Consensus 82 ~i~Dp~i~~afKdLmA~sW~elp~svv~~ak~a---lSk~tdDkaGqeaL~n 130 (224)
.-.||+..+-+++-...==+.+.+.++++||.+ +++|.+|...|..+.+
T Consensus 186 ~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~ 237 (256)
T 1h6g_A 186 NYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFID 237 (256)
T ss_dssp TSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 445776655544431111112567899999998 7788888776666654
No 17
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=26.85 E-value=27 Score=25.57 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHcccCC---CchhHHHHHHhhhccc
Q 027365 83 IRDPEIQRAFKDLMAADWGE---LPASVIHDAKSALSRN 118 (224)
Q Consensus 83 i~Dp~i~~afKdLmA~sW~e---lp~svv~~ak~alSk~ 118 (224)
+.||+.++.+..|+.+ |.+ .|+++++..+.+|+++
T Consensus 94 ~~~~~~~~kl~~ll~i-W~~r~vf~~~~i~~L~~~L~~s 131 (132)
T 4flb_A 94 VKDPSVSKSVERIFKI-WEDRNVYPEEMIVALREALSTT 131 (132)
T ss_dssp TCSTTTHHHHHHHHHH-HHHHTSSCHHHHHHHHHHHTSC
T ss_pred hCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHhcc
Confidence 4678888888888875 654 8999999999988763
No 18
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=26.18 E-value=2.5e+02 Score=25.63 Aligned_cols=92 Identities=8% Similarity=0.072 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHcccCCCch-------hHHHHHHhhhcccC-----C---------ch-------hHHHHHHHHHH
Q 027365 82 VIRDPEIQRAFKDLMAADWGELPA-------SVIHDAKSALSRNN-----D---------DK-------AGQEVLKNVFS 133 (224)
Q Consensus 82 ~i~Dp~i~~afKdLmA~sW~elp~-------svv~~ak~alSk~t-----d---------Dk-------aGqeaL~nvfr 133 (224)
.+.||+++..|+.|-...=..+++ .++++.++..++++ + |- ...+.++.+|+
T Consensus 87 ~l~~~~~~~~l~~l~~~g~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~l~~~p~l~~~~~~s~d~~~R~~aW~ 166 (615)
T 1r42_A 87 EIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWE 166 (615)
T ss_dssp TCCCHHHHHHHHHHTCCGGGGSCHHHHHHHHHHHHHHHHHHHHCEEEETTEEEEEEETTTBHHHHHHHCCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCeeccCCCcccccccchhHHHHHHhCCCHHHHHHHHH
Confidence 678999888888664431011344 56666666665543 1 11 12234477888
Q ss_pred HHHH-H-HHHHHH---HHHHhhhhhhccchhHHHHHHHHHhhcCCCh
Q 027365 134 AAEA-V-EEFIGI---IMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175 (224)
Q Consensus 134 AAeA-v-EeFgGi---L~~LrmeiDDl~Glsay~rY~~YLdsFgpdE 175 (224)
++.. + ++|--+ ++.|+.++-.+.|-.. .|-..++.|.|..
T Consensus 167 ~~r~~~~~~~~~~l~~~v~l~~e~A~~~G~~~--~~d~~~~~ye~~~ 211 (615)
T 1r42_A 167 SWRSEVGKQLRPLYEEYVVLKNEMARANHYED--YGDYWRGDYEVNG 211 (615)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSS--HHHHHHTTTCBCS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHhhcccc
Confidence 8653 2 224443 4555777777776544 2333456666654
No 19
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=25.38 E-value=1.1e+02 Score=26.06 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHcccCCCc-----hhHHHHHHhhhcccCCchhHHHHHHHHHH
Q 027365 80 MPVIRDPEIQRAFKDLMAADWGELP-----ASVIHDAKSALSRNNDDKAGQEVLKNVFS 133 (224)
Q Consensus 80 lP~i~Dp~i~~afKdLmA~sW~elp-----~svv~~ak~alSk~tdDkaGqeaL~nvfr 133 (224)
++.+...++.+.+-+.+..+-.++| +...--+-..|+.+|-+++...++.+.+.
T Consensus 8 ~~~~~~~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~ 66 (369)
T 3fsp_A 8 TERFPAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFID 66 (369)
T ss_dssp ---CCHHHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 6778888899999999987766665 66666777789999988887777777663
No 20
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=24.99 E-value=1.5e+02 Score=22.06 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------hhhccchh--HHHHH------------HHHHhhcCCChhHHHHHHHHh
Q 027365 127 VLKNVFSAAEAVEEFIGIIMNIKME-------FDDEIGLS--VYQRY------------ATYLDAFGPDESYLRKKVETE 185 (224)
Q Consensus 127 aL~nvfrAAeAvEeFgGiL~~Lrme-------iDDl~Gls--ay~rY------------~~YLdsFgpdE~yLrKKVE~E 185 (224)
.+..-+........||-.|..+|.+ +-+.+|+| .++|| .++.+.||-+-.+|-..+|.+
T Consensus 55 ~~~~~~~~~~~~~~~g~~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~~l~~~~~~~ 134 (141)
T 3kxa_A 55 RAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERR 134 (141)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHHHHhhhh
Confidence 3333333344456666677777654 55667776 33333 334445555555554444433
No 21
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=24.99 E-value=1.6e+02 Score=24.20 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=36.6
Q ss_pred CCCHHH----HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHH
Q 027365 83 IRDPEI----QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVF 132 (224)
Q Consensus 83 i~Dp~i----~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkaGqeaL~nvf 132 (224)
++||++ ++.+.+.-+--|..-++...--+--.||.+|.|+....|..+.|
T Consensus 17 ~~~~~~~~~i~~r~~ef~~~~~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~ 70 (214)
T 3fhf_A 17 LKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIG 70 (214)
T ss_dssp HHTSTHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356544 45555554444666667777778888999999999999999987
No 22
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=24.83 E-value=90 Score=25.91 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhcCC
Q 027365 160 VYQRYATYLDAFGP 173 (224)
Q Consensus 160 ay~rY~~YLdsFgp 173 (224)
.|+++.++++.++.
T Consensus 337 ~~~~~~~~~~~~~~ 350 (361)
T 2zzv_A 337 AFASQLEYMKGIGY 350 (361)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCc
Confidence 45566666666654
No 23
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=24.28 E-value=53 Score=25.10 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhhhhccchh---------HHHHHHHHHhhcCCChhHHHHHHHHh
Q 027365 130 NVFSAAEAVEEFIGIIMNIK----MEFDDEIGLS---------VYQRYATYLDAFGPDESYLRKKVETE 185 (224)
Q Consensus 130 nvfrAAeAvEeFgGiL~~Lr----meiDDl~Gls---------ay~rY~~YLdsFgpdE~yLrKKVE~E 185 (224)
|.|+--.+|.++||.-.-.+ .+|-+-+|++ .=+-|.+||..|+-...=-|.++|.|
T Consensus 43 DL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~~~~e~~~l~~~ 111 (121)
T 2rq5_A 43 DLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKE 111 (121)
T ss_dssp CHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHCcCHHHHhhHHHH
Confidence 78888899999999322221 2344444443 22336666666653222224444444
No 24
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=23.95 E-value=1.3e+02 Score=26.83 Aligned_cols=74 Identities=12% Similarity=0.262 Sum_probs=46.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-------ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHH
Q 027365 75 EDVAHMPVIRDPEIQRAFKDLMAA-------DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFS 133 (224)
Q Consensus 75 ~d~~hlP~i~Dp~i~~afKdLmA~-------sW~elp~s----vv~~ak~alSk~tdDkaG----------qeaL~nvfr 133 (224)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|..+.|+.+- .|+..++.+
T Consensus 34 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~ 113 (503)
T 3iwj_A 34 NIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDD 113 (503)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345667888888898888877664 79999865 455556666665554442 233344555
Q ss_pred HHHHHHHHHHHHHHH
Q 027365 134 AAEAVEEFIGIIMNI 148 (224)
Q Consensus 134 AAeAvEeFgGiL~~L 148 (224)
+++.++.|.+.+..+
T Consensus 114 ~~~~~~~~a~~~~~~ 128 (503)
T 3iwj_A 114 VAGCFEYYADLAEKL 128 (503)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555554444
No 25
>3zrg_A Pexrd2, pexrd2 family secreted RXLR effector peptide, PUT; protein binding, plant pathogen interactions; 1.75A {Phytophthora infestans}
Probab=23.33 E-value=80 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHh
Q 027365 128 LKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSVYQRYATYLD 169 (224)
Q Consensus 128 L~nvfrAAeAvEeFgGiL~~LrmeiDDl~Glsay~rY~~YLd 169 (224)
++++-+.+.+.++|..+. -|++|.+||+
T Consensus 32 ia~a~~s~~~L~~~mqT~--------------eY~Ky~~YlN 59 (67)
T 3zrg_A 32 IAAAANSARAMEKLGETL--------------KMKKLLRYLN 59 (67)
T ss_dssp HHHHHHCHHHHHHHHTCH--------------HHHHHHHHHH
T ss_pred HHHHHcChHHHHHHhcCH--------------HHHHHHHHHH
Confidence 445555777777776543 4777777774
No 26
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=22.89 E-value=2.1e+02 Score=23.36 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHccc-CCCchhHHHHHHhhhcccC--Cch-----hHHHHHHHHHHHHHHH
Q 027365 84 RDPEIQRAFKDLMAADW-GELPASVIHDAKSALSRNN--DDK-----AGQEVLKNVFSAAEAV 138 (224)
Q Consensus 84 ~Dp~i~~afKdLmA~sW-~elp~svv~~ak~alSk~t--dDk-----aGqeaL~nvfrAAeAv 138 (224)
.+|+|.+|+++-+...+ ...+.....+..+.|.+-. .+. -|.||+..++++|.+.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~ 135 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999999999887643 2335555555555554422 222 3999999999998764
No 27
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=22.21 E-value=33 Score=26.68 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=29.4
Q ss_pred CchhHHHHHHhhhcccCC-------chhHHHHHHHHHHHHHHHHHHHHHHH
Q 027365 103 LPASVIHDAKSALSRNND-------DKAGQEVLKNVFSAAEAVEEFIGIIM 146 (224)
Q Consensus 103 lp~svv~~ak~alSk~td-------DkaGqeaL~nvfrAAeAvEeFgGiL~ 146 (224)
+++.|+++.-..|..... +.-|.+...+.|...+++|.-||+.+
T Consensus 6 ~~~~va~~ia~~L~E~k~~li~RvV~~lG~~~~~~L~~eT~~IE~~GG~~t 56 (113)
T 2w4s_A 6 MESIVLNTIVTGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLT 56 (113)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEC
Confidence 344444444444444333 34588999999999999999999765
No 28
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=21.44 E-value=1e+02 Score=22.10 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHH
Q 027365 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQ 125 (224)
Q Consensus 85 Dp~i~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkaGq 125 (224)
|+++..++|..-+.+=--+.+.+.....+++...+..+-|+
T Consensus 9 pd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~~~~~~~l~~ 49 (77)
T 2bsq_E 9 SEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGS 49 (77)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCcccccHHH
Confidence 57888888888888877788888888888876644434443
No 29
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=21.41 E-value=60 Score=22.38 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHcccCC--Cc---hhHHHHHHhhhcc
Q 027365 83 IRDPEIQRAFKDLMAADWGE--LP---ASVIHDAKSALSR 117 (224)
Q Consensus 83 i~Dp~i~~afKdLmA~sW~e--lp---~svv~~ak~alSk 117 (224)
.++.+|+++++.||..|=-+ -+ .+-|+.||..|.+
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56679999999999998765 44 4566777776654
No 30
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=21.08 E-value=1.6e+02 Score=25.42 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=45.5
Q ss_pred CCCCCC----CCHHHHHHHHHHHHc-------ccC--CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHH
Q 027365 78 AHMPVI----RDPEIQRAFKDLMAA-------DWG--ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEF 141 (224)
Q Consensus 78 ~hlP~i----~Dp~i~~afKdLmA~-------sW~--elp~svv~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeF 141 (224)
.|+|+. +||..+-.+=.++.. +.. .||+.++..++.|-+.+.--.-..+-|.|+-.+|+-|.+.
T Consensus 167 ~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i~l~~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L 243 (268)
T 3id6_A 167 IHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDL 243 (268)
T ss_dssp TTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466764 677665544333321 122 3799999999998888777777778899999999988764
No 31
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=21.02 E-value=2.9e+02 Score=23.76 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=32.0
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 027365 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGII 145 (224)
Q Consensus 102 elp~svv~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeFgGiL 145 (224)
.+|+.++..+..+.+.+.--.-..+-|.|+..+|+-|.+..-.-
T Consensus 71 ~l~~~~~~~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r 114 (255)
T 3icx_A 71 GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIR 114 (255)
T ss_dssp TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888777777665555555667999999999888765433
No 32
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} SCOP: d.92.1.0
Probab=20.55 E-value=69 Score=30.07 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=41.7
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhhccchhHHHHHHHHHhhcCCCh
Q 027365 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI------IMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175 (224)
Q Consensus 102 elp~svv~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeFgGi------L~~LrmeiDDl~Glsay~rY~~YLdsFgpdE 175 (224)
.||..++.+--++-|+ -.++|+-|++-.-|.+. ++.|+.|+-+..|-. -..|-+-||.|.|+-
T Consensus 97 ~iP~~lv~~~~~~~s~----------~~~~W~~Ar~~nDf~~F~P~L~~vv~l~re~A~~~~~~-~~pYDaLLd~yEpg~ 165 (501)
T 3hq2_A 97 KIPEAEYKEYVILCSK----------AETAWEEAKGKSDFSLFSPYLEQLIEFNKRFITYWGYQ-EHPYDALLDLFEPGV 165 (501)
T ss_dssp TSCHHHHHHHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCCS-SCTTHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHH----------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHhcCCCC
Confidence 4555555544444443 35789999987777774 455666666666632 267899999999963
No 33
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=20.18 E-value=2.8e+02 Score=24.32 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCC
Q 027365 83 IRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120 (224)
Q Consensus 83 i~Dp~i~~afKdLmA~sW~elp~svv~~ak~alSk~td 120 (224)
|.++.++..|.-.+.+-=..=++.++..++.-+....+
T Consensus 80 i~~~~lR~~FDYfLs~~gE~~~~~i~~~v~~~i~~~lp 117 (332)
T 2es4_D 80 ARTRAVREFFDYCLTAQGELTPAALDALVRREIAAQLD 117 (332)
T ss_dssp CCSTHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhCC
Confidence 55678888888887766333355667777777766554
Done!