BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027366
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1D|A Chain A, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|B Chain B, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|C Chain C, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|D Chain D, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|E Chain E, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|F Chain F, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|G Chain G, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|H Chain H, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|I Chain I, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|J Chain J, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|K Chain K, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|L Chain L, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|M Chain M, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|N Chain N, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|O Chain O, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|P Chain P, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
Length = 207
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/144 (70%), Positives = 112/144 (77%), Gaps = 28/144 (19%)
Query: 71 ASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDV 130
AS+SS++ GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDV
Sbjct: 1 ASSSSSMALGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDV 60
Query: 131 HVRATGDIHIDDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALG 190
HVRATGD+HIDDHHTNED+ LAIGT ALL+ALG
Sbjct: 61 HVRATGDVHIDDHHTNEDIALAIGT----------------------------ALLKALG 92
Query: 191 DRKGINRFGDFTAPLDEALIHVSL 214
+RKGINRFGDFTAPLDEALIHVSL
Sbjct: 93 ERKGINRFGDFTAPLDEALIHVSL 116
>pdb|1RHY|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Dehydratase
pdb|1RHY|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Dehydratase
Length = 202
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 71/136 (52%), Gaps = 33/136 (24%)
Query: 79 SGRIGEVKRVTKETNVSVKINVDG-SGVADS----STCIPFLDHMLDQLASHGLFDVHVR 133
S RI V+R T ET++S I++D GV + ST I FLDHM LA HG + ++
Sbjct: 2 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQ 61
Query: 134 ATGDIHIDDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRK 193
GD+HIDDHHT ED LA+G +A +ALG+RK
Sbjct: 62 CKGDLHIDDHHTAEDCALALG----------------------------EAFKKALGERK 93
Query: 194 GINRFGDFTAPLDEAL 209
GI R+G APLDE+L
Sbjct: 94 GIKRYGYAYAPLDESL 109
>pdb|2AE8|A Chain A, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|B Chain B, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|C Chain C, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|D Chain D, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|E Chain E, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|F Chain F, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
Length = 221
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I + +R T ET +++ I+ D S + +T + FL+H L H +++ A GDI +D
Sbjct: 31 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHXLTLFTFHSGLSLNIEAQGDIDVD 89
Query: 142 DHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGDF 201
DHH ED+G+ IG Q LL+ + D+K R+G
Sbjct: 90 DHHVTEDIGIVIG----------------------------QLLLEXIKDKKHFVRYGTX 121
Query: 202 TAPLDEALIHV 212
P DE L V
Sbjct: 122 YIPXDETLARV 132
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 108 SSTCIPFLDHMLDQLASHGLFDV 130
+ T IP +D ++DQ A HGL +V
Sbjct: 152 AETVIPMMDAVIDQCAEHGLDEV 174
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 108 SSTCIPFLDHMLDQLASHGLFDV 130
+ T IP +D ++DQ A HGL +V
Sbjct: 397 AETVIPMMDAVIDQCAEHGLDEV 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,729,437
Number of Sequences: 62578
Number of extensions: 205499
Number of successful extensions: 446
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 13
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)