Query 027366
Match_columns 224
No_of_seqs 132 out of 1036
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:37:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1d_A IGPD 1, imidazoleglycer 100.0 4E-56 1.4E-60 380.0 9.7 121 75-223 5-125 (207)
2 1rhy_A IGPD, imidazole glycero 100.0 2.4E-55 8.1E-60 373.9 10.2 116 80-223 3-123 (202)
3 2ae8_A IGPD, imidazoleglycerol 100.0 6.5E-54 2.2E-58 369.5 6.2 116 79-223 28-143 (221)
4 1rhy_A IGPD, imidazole glycero 96.4 0.0059 2E-07 52.3 6.4 73 80-155 96-179 (202)
5 2ae8_A IGPD, imidazoleglycerol 96.4 0.0071 2.4E-07 52.5 6.8 73 80-155 116-199 (221)
6 2f1d_A IGPD 1, imidazoleglycer 95.9 0.0087 3E-07 51.5 5.2 72 81-155 99-181 (207)
7 3bbn_I Ribosomal protein S9; s 48.8 4.9 0.00017 34.4 0.8 49 84-136 75-136 (197)
8 1rlz_A DHS, deoxyhypusine synt 27.2 5.9 0.0002 36.4 -2.3 82 86-206 91-174 (369)
9 3h20_A Replication protein B; 21.8 83 0.0029 28.7 4.1 81 111-199 47-144 (323)
10 2ja9_A Exosome complex exonucl 21.0 16 0.00053 29.7 -0.7 37 117-155 112-148 (175)
No 1
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=4e-56 Score=379.95 Aligned_cols=121 Identities=83% Similarity=1.162 Sum_probs=113.8
Q ss_pred CCCCCCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccceeeeeccc
Q 027366 75 SAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIG 154 (224)
Q Consensus 75 s~~~~~R~~~v~R~TkET~I~V~lnlDGsG~~~isTgI~FLDHML~qla~Hg~fDl~v~A~GDl~IDdHHtvEDvGIaLG 154 (224)
++....|+++++|+||||+|+|+|||||+|+++++||||||||||+|||+||+|||.|+|+||+|||+|||+||+||+||
T Consensus 5 ~~~~~~R~a~v~R~T~ET~I~v~l~LDG~G~~~i~TGigFlDHML~~~a~Hg~~dL~v~a~GDl~iD~HHtvEDvgI~LG 84 (207)
T 2f1d_A 5 SSMALGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIG 84 (207)
T ss_dssp -----CCEEEEEEECSSCEEEEEEETTCCCCEEEECSCHHHHHHHHHHHHHHTCEEEEEEECCTTTCSHHHHHHHHHHHH
T ss_pred CcccccceEEEEEcCCcEEEEEEEEeCCCCceeeeCCChHHHHHHHHHHHHcCCceEEEEecCccccCCCchhhhhhhHH
Confidence 44456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccccccccceeeehhhHHHHHHHHHhCCccccccccceeccccccceEEEEEecCceeec
Q 027366 155 TVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 223 (224)
Q Consensus 155 ~a~~q~~~s~~~~~~~~~~~~~~~~~~v~Al~qALGdrkGI~RfG~~~~PMDEAL~~v~lD~sg~~~~~ 223 (224)
| ||+||||||+||+|||++++||||||++|+||+|||-.+.
T Consensus 85 ~----------------------------Al~~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv 125 (207)
T 2f1d_A 85 T----------------------------ALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLG 125 (207)
T ss_dssp H----------------------------HHHHHHTTCCSBCCBCCEEEEETTEEEEEEEECCSSCEEE
T ss_pred H----------------------------HHHHHhcCccccceeEeeeecccceeeEEEEEcCCCCeEE
Confidence 9 9999999999999999999999999999999999997663
No 2
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=2.4e-55 Score=373.92 Aligned_cols=116 Identities=45% Similarity=0.686 Sum_probs=107.4
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCc-----eeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccceeeeeccc
Q 027366 80 GRIGEVKRVTKETNVSVKINVDGSG-----VADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIG 154 (224)
Q Consensus 80 ~R~~~v~R~TkET~I~V~lnlDGsG-----~~~isTgI~FLDHML~qla~Hg~fDl~v~A~GDl~IDdHHtvEDvGIaLG 154 (224)
.|+++++|+||||+|+|+|||||+| +++++||||||||||+|||+||+|||.|+|+||+|||+|||+||+||+||
T Consensus 3 ~R~a~v~R~T~ET~I~v~l~LDG~g~~~~~~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHtvED~gI~LG 82 (202)
T 1rhy_A 3 ERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLHIDDHHTAEDCALALG 82 (202)
T ss_dssp CCEEEEEEECSSCEEEEEEESCCCTTTCCCCEEEECSCHHHHHHHHHHHHHTTCEEEEEEESCC------CCHHHHHHHH
T ss_pred ceeEEEEecCCceEEEEEEEeCCCCCcccceeeeeCCCcHHHHHHHHHHHHcCCceEEEEecCCccccCccHHHhhhhHH
Confidence 5999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccccccccceeeehhhHHHHHHHHHhCCccccccccceeccccccceEEEEEecCceeec
Q 027366 155 TVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 223 (224)
Q Consensus 155 ~a~~q~~~s~~~~~~~~~~~~~~~~~~v~Al~qALGdrkGI~RfG~~~~PMDEAL~~v~lD~sg~~~~~ 223 (224)
+ ||+||||||+||+|||++++||||||++|+||+|||-.+.
T Consensus 83 ~----------------------------Al~~ALGdk~GI~RyG~a~vPMDEaL~~v~vDlSgRpylv 123 (202)
T 1rhy_A 83 E----------------------------AFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFM 123 (202)
T ss_dssp H----------------------------HHHHHHTTCTTCCCEEEEEEEETTEEEEEEEECSSCCEEE
T ss_pred H----------------------------HHHHHhcCccccceeecccccccceeeEEEEEcCCCceEE
Confidence 9 9999999999999999999999999999999999997653
No 3
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=6.5e-54 Score=369.49 Aligned_cols=116 Identities=34% Similarity=0.538 Sum_probs=104.0
Q ss_pred CCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccceeeeeccccccc
Q 027366 79 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTVTI 158 (224)
Q Consensus 79 ~~R~~~v~R~TkET~I~V~lnlDGsG~~~isTgI~FLDHML~qla~Hg~fDl~v~A~GDl~IDdHHtvEDvGIaLG~a~~ 158 (224)
+.|+++++|+||||+|+|+|||| +|+++++||||||||||+|||+||+|||.|+|+||+|||+|||+||+||+||+
T Consensus 28 ~~R~a~v~R~T~ET~I~v~l~LD-~G~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHTvEDvgI~LGq--- 103 (221)
T 2ae8_A 28 NAMIYQKQRNTAETQLNISISDD-QSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQ--- 103 (221)
T ss_dssp --CEEEEEC----CEEEEEEESS-CCCCEEECSCHHHHHHHHHHHHHHCCEEEEEEECC----HHHHHHHHHHHHHH---
T ss_pred cceeEEEEEeCCcEEEEEEEEeC-CCcceecCCCcHHHHHHHHHHHHcCCceEEEEeeCCcccCCccHHHHHhHHHH---
Confidence 56999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccccceeeehhhHHHHHHHHHhCCccccccccceeccccccceEEEEEecCceeec
Q 027366 159 QNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 223 (224)
Q Consensus 159 q~~~s~~~~~~~~~~~~~~~~~~v~Al~qALGdrkGI~RfG~~~~PMDEAL~~v~lD~sg~~~~~ 223 (224)
||+||||||+||+|||++++||||||++|+||+|||-.+.
T Consensus 104 -------------------------Al~~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv 143 (221)
T 2ae8_A 104 -------------------------LLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLS 143 (221)
T ss_dssp -------------------------HHHHHHHHCCSBCCEEEEEEEETTEEEEEEEECCSCCEEE
T ss_pred -------------------------HHHHHhcCcccCceeecceecccceeEEEEEEcCCCceEE
Confidence 9999999999999999999999999999999999997653
No 4
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=96.40 E-value=0.0059 Score=52.31 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=62.4
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCcccee
Q 027366 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (224)
Q Consensus 80 ~R~~~v~R~TkET~I~V~lnlDGsG~~~isTgI~----------FLDHML~qla~Hg~fDl~v~A-~GDl~IDdHHtvED 148 (224)
.|-+...---.|+-+.+.|++-|..-...+-+.+ .+.|.+..|+.++++.|||++ .|+ ++||.+|-
T Consensus 96 ~RyG~a~vPMDEaL~~v~vDlSgRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~---N~HH~~Ea 172 (202)
T 1rhy_A 96 KRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGE---NNHHIAES 172 (202)
T ss_dssp CCEEEEEEEETTEEEEEEEECSSCCEEEEECCCCSSEETTEETHHHHHHHHHHHHHHTCEEEEEEEECS---SHHHHHHH
T ss_pred ceeecccccccceeeEEEEEcCCCceEEEccCCCCcccCCCChHHHHHHHHHHHhhCCCeEEEEEEecC---CcHHHHHH
Confidence 4778777788999999999999887665554432 689999999999999999995 895 68999999
Q ss_pred eeecccc
Q 027366 149 VGLAIGT 155 (224)
Q Consensus 149 vGIaLG~ 155 (224)
+-=++|+
T Consensus 173 ~FKA~ar 179 (202)
T 1rhy_A 173 AFKALAL 179 (202)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999999
No 5
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=96.35 E-value=0.0071 Score=52.55 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=62.5
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCC----------ccHHHHHHHHHhhcCcceEEEE-ecCccccCCcccee
Q 027366 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCI----------PFLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (224)
Q Consensus 80 ~R~~~v~R~TkET~I~V~lnlDGsG~~~isTgI----------~FLDHML~qla~Hg~fDl~v~A-~GDl~IDdHHtvED 148 (224)
.|-+...---.|+-+.|.|++-|..-...+-+. ..+.|.+..|+.++++.|+|++ .|+ ++||.+|-
T Consensus 116 ~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~G~---N~HH~~EA 192 (221)
T 2ae8_A 116 VRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGG---NTHHEIEA 192 (221)
T ss_dssp CCEEEEEEEETTEEEEEEEECCSCCEEEEECCCSCSEETTEETTHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHH
T ss_pred ceeecceecccceeEEEEEEcCCCceEEEecccCCcccCCCChHHHHHHHHHHHhcCCceEEEEeeecC---CcHHHHHH
Confidence 377777778899999999999988766555433 2689999999999999999999 785 68999999
Q ss_pred eeecccc
Q 027366 149 VGLAIGT 155 (224)
Q Consensus 149 vGIaLG~ 155 (224)
+--++|+
T Consensus 193 ~FKA~ar 199 (221)
T 2ae8_A 193 IFKAFSR 199 (221)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999999
No 6
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=95.94 E-value=0.0087 Score=51.46 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=60.5
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCC----------ccHHHHHHHHHhhcCcceEEEE-ecCccccCCccceee
Q 027366 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCI----------PFLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNEDV 149 (224)
Q Consensus 81 R~~~v~R~TkET~I~V~lnlDGsG~~~isTgI----------~FLDHML~qla~Hg~fDl~v~A-~GDl~IDdHHtvEDv 149 (224)
|-+...---.|+-+.|.|++-|.+-...+-+. ..+.|.+..|+.++++.|||+. .|+ ++||.+|-+
T Consensus 99 RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~---N~HH~~Ea~ 175 (207)
T 2f1d_A 99 RFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGE---NSHHIIEAT 175 (207)
T ss_dssp CBCCEEEEETTEEEEEEEECCSSCEEEEECCCSSSEETTEETTHHHHHHHHHHHHHTCEEEEEEEECC---CHHHHHHHH
T ss_pred eeEeeeecccceeeEEEEEcCCCCeEEEecccCccccCCCchhhHHHHHHHHHhcCCCEEEEEeeecC---CcHHHHHHH
Confidence 66666667789999999999988766555433 2689999999999999999995 785 689999999
Q ss_pred eecccc
Q 027366 150 GLAIGT 155 (224)
Q Consensus 150 GIaLG~ 155 (224)
-=++|+
T Consensus 176 FKA~ar 181 (207)
T 2f1d_A 176 FKAFAR 181 (207)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999999
No 7
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=48.79 E-value=4.9 Score=34.40 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=28.8
Q ss_pred EEEeeeCCeEEEEEEEeCCCceeeeecCCccHH-------H---HH---HHHHhhcCcceEEEEec
Q 027366 84 EVKRVTKETNVSVKINVDGSGVADSSTCIPFLD-------H---ML---DQLASHGLFDVHVRATG 136 (224)
Q Consensus 84 ~v~R~TkET~I~V~lnlDGsG~~~isTgI~FLD-------H---ML---~qla~Hg~fDl~v~A~G 136 (224)
.-+|+|.= ..|.+. .|+|...|+ |.++-+ + ++ ..+-..+.||+.|+++|
T Consensus 75 tGRRKtAv--ArV~l~-~G~G~I~VN-g~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~G 136 (197)
T 3bbn_I 75 TGRRKCAI--ARVVLQ-EGTGKFIIN-YRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHG 136 (197)
T ss_dssp CCEETTEE--EEEEEE-ESSCCEEET-TEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEES
T ss_pred EeeCCceE--EEEEEE-cCceeEEEC-CCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEec
Confidence 34555533 334443 799988774 455222 1 12 22234589999999998
No 8
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Probab=27.18 E-value=5.9 Score=36.37 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=53.3
Q ss_pred EeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccceeeeecccccccccCcccc
Q 027366 86 KRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTVTIQNGVSCF 165 (224)
Q Consensus 86 ~R~TkET~I~V~lnlDGsG~~~isTgI~FLDHML~qla~Hg~fDl~v~A~GDl~IDdHHtvEDvGIaLG~a~~q~~~s~~ 165 (224)
.|+.+++.| -|-+-|+ -+++|++ ..+..|.+|+.+|+-|.--|-+ .||+--++|- .-+-
T Consensus 91 ~~~~~~~tI--FLg~tgn---missGlR---~iI~~Li~~~~VDvIVTTgggi-------ehD~ik~lg~-~y~G----- 149 (369)
T 1rlz_A 91 RRPLTSCTI--FLGYTSN---LISSGIR---ETIRYLVQHNMVDVLVTTAGGV-------EEDLIKCLAP-TYLG----- 149 (369)
T ss_dssp ----CSSEE--EEEECTH---HHHSTHH---HHHHHHHHTTCCSEEEECHHHH-------HHHHHTTTSC-CEEC-----
T ss_pred hcccCCCeE--EEEcccc---ccchhHH---HHHHHHHHcCCeeEEEccCCch-------HHHHHHHhcc-ceec-----
Confidence 344455666 4444443 5788876 7899999999999999988865 4677777775 1111
Q ss_pred ccccccceeeehhhHH--HHHHHHHhCCccccccccceecccc
Q 027366 166 LCSSEMKFCCIISTFV--VQALLQALGDRKGINRFGDFTAPLD 206 (224)
Q Consensus 166 ~~~~~~~~~~~~~~~~--v~Al~qALGdrkGI~RfG~~~~PMD 206 (224)
.|- =..|+ ++||||.|+.++|-|
T Consensus 150 -------------~f~~dd~~Lr-----~~ginRIgn~~ip~e 174 (369)
T 1rlz_A 150 -------------EFSLRGKELR-----ENGINRIGNLLVPNE 174 (369)
T ss_dssp -------------CTTCCHHHHH-----HTTEEEETTEEEETH
T ss_pred -------------CCCCChHHHH-----HcCCCcccceeeccH
Confidence 010 01233 589999999999974
No 9
>3h20_A Replication protein B; primase, nucleotidyltransferase, helix-bundle-domain, replic RSF1010; 1.99A {Plasmid RSF1010} PDB: 3h25_A
Probab=21.85 E-value=83 Score=28.66 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCccHHHHHHHHHhhcCcceEEEEecCccccCCc--cceeeeecccccccccCc--cccccccccceeeehh--------
Q 027366 111 CIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHH--TNEDVGLAIGTVTIQNGV--SCFLCSSEMKFCCIIS-------- 178 (224)
Q Consensus 111 gI~FLDHML~qla~Hg~fDl~v~A~GDl~IDdHH--tvEDvGIaLG~a~~q~~~--s~~~~~~~~~~~~~~~-------- 178 (224)
-+|+|-|| ...|-|+.|+.... |.|| .++|++-.--..+.+.+. +.|+=+|--+|-.++-
T Consensus 47 ~~p~L~r~-----N~~G~nIYv~P~~~---~~h~~vliDDL~~~~L~~L~a~g~~Pa~VvETSPGnyQa~~~v~~~~~~~ 118 (323)
T 3h20_A 47 NTPWLKRM-----NAQGNDVYIRPAEQ---ERHGLVLVDDLSEFDLDDMKAEGREPALVVETSPKNYQAWVKVADAAGGE 118 (323)
T ss_dssp THHHHHHH-----HHTTEEEEEEECTT---CCCCEEEEEEECHHHHHHHHHTTCCCSEEEEEETTEEEEEEECCSCCCHH
T ss_pred HHHHHHHH-----HhcCCCEEEeecCC---CCcceEEeecCChhhHHHHHhCCCCCeeEEecCCCCeeEEEEeCCCCCHH
Confidence 34555554 35667999998863 3565 678888666667777777 7888888888776653
Q ss_pred --hHHHHHHHHHh-CCcc--cccccc
Q 027366 179 --TFVVQALLQAL-GDRK--GINRFG 199 (224)
Q Consensus 179 --~~~v~Al~qAL-Gdrk--GI~RfG 199 (224)
+++.++|.++. ||.+ |.+|||
T Consensus 119 ~~~~~ak~La~~~GGDP~~sd~~r~~ 144 (323)
T 3h20_A 119 LRGQIARTLASEYDADPASADSRHYG 144 (323)
T ss_dssp HHHHHHHHHHHHTTCCGGGCSTTCCE
T ss_pred HHHHHHHHHHHHhCCCCcccCCcccc
Confidence 45788888888 7765 678886
No 10
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=20.99 E-value=16 Score=29.70 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCcceEEEEecCccccCCccceeeeecccc
Q 027366 117 HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGT 155 (224)
Q Consensus 117 HML~qla~Hg~fDl~v~A~GDl~IDdHHtvEDvGIaLG~ 155 (224)
|||+.|.++.+|++-|=..|-+||+.... +.-+++++
T Consensus 112 ~~l~~l~~~~~~ei~vG~NG~IWi~~~~~--~~~~~v~~ 148 (175)
T 2ja9_A 112 PLLKVLAAHTKFEVAIGLNGKIWVKCEEL--SNTLACYR 148 (175)
T ss_dssp CHHHHHHTTCCCEEEEETTTEEEEECSSH--HHHHHHHH
T ss_pred chHHhhhccCCeEEEEECCcEEEEecCCH--HHHHHHHH
Confidence 49999999999999999999999997433 33444555
Done!