RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027366
(224 letters)
>gnl|CDD|215430 PLN02800, PLN02800, imidazoleglycerol-phosphate dehydratase.
Length = 261
Score = 205 bits (522), Expect = 3e-66
Identities = 112/200 (56%), Positives = 126/200 (63%), Gaps = 33/200 (16%)
Query: 15 SSTSSRRLLVKPKTNLSRKLLPISTQYCSSTRRMNSLTTPRASLNPDGDSKHNNGSASTS 74
S++SS L++PK + LLP SS S S +AS+S
Sbjct: 4 SASSSAAQLLRPKLS-FIDLLPRRAAIVSSPSSSLPRFLRMESQLRQSIS----CAASSS 58
Query: 75 SAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRA 134
S+ GRIGEVKRVTKETNVSVKIN+DG+GVADSST IPFLDHMLDQLASHGLFDVHV+A
Sbjct: 59 SSNALGRIGEVKRVTKETNVSVKINLDGTGVADSSTGIPFLDHMLDQLASHGLFDVHVKA 118
Query: 135 TGDIHIDDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKG 194
TGD+ IDDHHTNEDV LAIG ALL+ALGDRKG
Sbjct: 119 TGDLWIDDHHTNEDVALAIG----------------------------TALLKALGDRKG 150
Query: 195 INRFGDFTAPLDEALIHVSL 214
INRFGDF+APLDEALI V L
Sbjct: 151 INRFGDFSAPLDEALIEVVL 170
>gnl|CDD|234873 PRK00951, hisB, imidazoleglycerol-phosphate dehydratase; Validated.
Length = 195
Score = 183 bits (468), Expect = 7e-59
Identities = 64/134 (47%), Positives = 84/134 (62%), Gaps = 28/134 (20%)
Query: 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHI 140
R EV+R TKET++SV++N+DG+G +D T + FLDHMLDQ A HGLFD+ V+A GD+HI
Sbjct: 3 RTAEVERKTKETDISVELNLDGTGKSDIDTGVGFLDHMLDQFARHGLFDLTVKAKGDLHI 62
Query: 141 DDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGD 200
DDHHT EDVG+ +G QAL +ALGD+KGI R+G
Sbjct: 63 DDHHTVEDVGIVLG----------------------------QALKEALGDKKGIRRYGH 94
Query: 201 FTAPLDEALIHVSL 214
P+DEAL V++
Sbjct: 95 AYVPMDEALARVAV 108
>gnl|CDD|153419 cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase.
Imidazoleglycerol-phosphate dehydratase (IGPD; EC
4.2.1.19) catalyzes the dehydration of imidazole
glycerol phosphate to imidazole acetol phosphate, the
sixth step of histidine biosynthesis in plants and
microorganisms where the histidine is synthesized de
novo. There is an internal repeat in the protein domain
that is related by pseudo-dyad symmetry, perhaps as a
result of an ancient gene duplication. The apo-form of
IGPD exists as a catalytically inactive trimer which, in
the presence of specific divalent metal cations such as
manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel
(Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a
biologically active high molecular weight metalloenzyme;
a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active
sites, and contains around 1.5 metal ions per monomer,
each monomer contributing residues to three separate
active sites. IGPD enzymes are monofunctional in fungi,
plants, archaea and some eubacteria while they are
encoded as bifunctional enzymes in other eubacteria,
such that the enzyme is fused to histidinol-phosphate
phosphatase, the penultimate enzyme of the histidine
biosynthesis pathway. The histidine biosynthesis pathway
is a potential target for development of herbicides, and
IGPD is a target for the triazole phosphonate
herbicides.
Length = 190
Score = 173 bits (442), Expect = 5e-55
Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 28/132 (21%)
Query: 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDD 142
E++R TKET++ V++N+DG+G + T I F DHML A HG FD+ V+A GD+ +DD
Sbjct: 1 AEIERKTKETDIEVELNLDGTGKSKIDTGIGFFDHMLTLFARHGGFDLTVKAKGDLEVDD 60
Query: 143 HHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGDFT 202
HHT EDVG+ +G QAL +ALGD+KGI R+G
Sbjct: 61 HHTVEDVGIVLG----------------------------QALKKALGDKKGIRRYGSAL 92
Query: 203 APLDEALIHVSL 214
P+DEAL V++
Sbjct: 93 VPMDEALARVAV 104
>gnl|CDD|223209 COG0131, HisB, Imidazoleglycerol-phosphate dehydratase [Amino acid
transport and metabolism].
Length = 195
Score = 166 bits (422), Expect = 5e-52
Identities = 60/134 (44%), Positives = 78/134 (58%), Gaps = 28/134 (20%)
Query: 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHI 140
R EV R TKET++ V +++DG+G + T + F DHMLDQLA HG FD+ V A GD+HI
Sbjct: 4 RTAEVTRKTKETDIEVSLDLDGTGKSKIDTGVGFFDHMLDQLARHGGFDLEVSAKGDLHI 63
Query: 141 DDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGD 200
DDHHT ED G+A+G QAL +ALGD++GI RFG
Sbjct: 64 DDHHTVEDTGIALG----------------------------QALKEALGDKRGIRRFGS 95
Query: 201 FTAPLDEALIHVSL 214
P+DEAL V++
Sbjct: 96 AYVPMDEALARVAV 109
>gnl|CDD|235471 PRK05446, PRK05446, imidazole glycerol-phosphate
dehydratase/histidinol phosphatase; Provisional.
Length = 354
Score = 152 bits (386), Expect = 9e-45
Identities = 55/137 (40%), Positives = 74/137 (54%), Gaps = 29/137 (21%)
Query: 78 DSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGD 137
R V R TKET++ V++ +D G + +T I F DHMLDQ+A+HG F + ++ GD
Sbjct: 163 KRDRYAHVVRNTKETDIDVEVWLDREGKSKINTGIGFFDHMLDQIATHGGFRLEIKVKGD 222
Query: 138 IHIDDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINR 197
+HIDDHHT ED LA+G +AL QALGD++GI R
Sbjct: 223 LHIDDHHTVEDTALALG----------------------------EALKQALGDKRGIGR 254
Query: 198 FGDFTAPLDEALIHVSL 214
FG F P+DE L +L
Sbjct: 255 FG-FVLPMDECLARCAL 270
>gnl|CDD|189563 pfam00475, IGPD, Imidazoleglycerol-phosphate dehydratase.
Length = 145
Score = 132 bits (334), Expect = 2e-39
Identities = 49/105 (46%), Positives = 59/105 (56%), Gaps = 28/105 (26%)
Query: 110 TCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTVTIQNGVSCFLCSS 169
T I F DHML+Q A HG FD+ V+A GD+ IDDHHT EDVG+ +G
Sbjct: 1 TGIGFFDHMLEQFAKHGGFDLTVKAKGDLEIDDHHTVEDVGIVLG--------------- 45
Query: 170 EMKFCCIISTFVVQALLQALGDRKGINRFGDFTAPLDEALIHVSL 214
QAL QALGD+KGI RFG T P+DEAL V++
Sbjct: 46 -------------QALKQALGDKKGIRRFGSATVPMDEALAEVAV 77
>gnl|CDD|184171 PRK13598, hisB, imidazoleglycerol-phosphate dehydratase;
Provisional.
Length = 193
Score = 81.8 bits (202), Expect = 2e-19
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 28/134 (20%)
Query: 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHI 140
R + R TKET + V +++D G ST +PF +HML L ++ V AT +
Sbjct: 3 RNANITRETKETKIEVFLDIDRKGEIKVSTPVPFFNHMLITLLTYMNSTATVSATDKLPY 62
Query: 141 DDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGD 200
DDHH EDV + +G A+ +ALGD++GI RF
Sbjct: 63 DDHHIVEDVAITLG----------------------------LAIKEALGDKRGIKRFSH 94
Query: 201 FTAPLDEALIHVSL 214
P+DEAL+ VSL
Sbjct: 95 QIIPMDEALVLVSL 108
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 29.4 bits (67), Expect = 1.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 113 PFLDHMLDQLASHGLFDV 130
PFL+++L+ LA G+ +
Sbjct: 30 PFLEYLLEYLARQGISRI 47
>gnl|CDD|214665 smart00442, FGF, Acidic and basic fibroblast growth factor family.
Mitogens that stimulate growth or differentiation of
cells of mesodermal or neuroectodermal origin. The
family play essential roles in patterning and
differentiation during vertebrate embryogenesis, and
have neurotrophic activities.
Length = 126
Score = 27.6 bits (62), Expect = 2.7
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 118 MLDQLASHGLFDVHVRATGDIHIDDHHTNED-----VGLAIGTVTIQNGVSC-FLC 167
L QL + + G + ++ + +A+G V I+ SC +LC
Sbjct: 3 RLRQLYCRNGQHLQILPDGTVDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLC 58
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 27.6 bits (62), Expect = 4.5
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 112 IPFLDHMLDQLASHGLFDVHV 132
P L+ ++ L G+ D+ +
Sbjct: 29 KPLLERQIETLKEAGIDDIVI 49
>gnl|CDD|112770 pfam03971, IDH, Monomeric isocitrate dehydrogenase.
NADP(+)-dependent isocitrate dehydrogenase (ICD) is an
important enzyme of the intermediary metabolism, as it
controls the carbon flux within the citric acid cycle
and supplies the cell with 2-oxoglutarate EC:1.1.1.42
and NADPH for biosynthetic purposes.
Length = 735
Score = 27.9 bits (62), Expect = 4.6
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 61 DGDSKHNNGSASTSSAVD-----SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFL 115
GD + S + + A + G+VK + + +D ++ + F
Sbjct: 174 GGDFFGSEKSMTLAQAGMVRIEFVAKDGKVKVLKDPVALQAGEIIDAMVMSKKALADFFE 233
Query: 116 DHMLDQLASHGLFDVHVRAT 135
+ M D + LF +HV+AT
Sbjct: 234 EQMQDAKETGVLFSLHVKAT 253
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 27.7 bits (62), Expect = 4.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 111 CIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHH 144
IP DHM+ + HG+FD G ++ D H
Sbjct: 56 VIPLDDHMVHR--GHGVFDTATIRDGHLYELDAH 87
>gnl|CDD|237413 PRK13528, PRK13528, outer membrane receptor FepA; Provisional.
Length = 727
Score = 27.8 bits (62), Expect = 5.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 62 GDSKHNNGSASTSSAVDSGRIGEVKRVTKETNV 94
GD++++N SA T S SG KETN
Sbjct: 280 GDTQNSNSSAVTESLAKSG---------KETNR 303
>gnl|CDD|215210 PLN02370, PLN02370, acyl-ACP thioesterase.
Length = 419
Score = 27.7 bits (61), Expect = 6.0
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 4 SVPARLVHLSISSTSSRRLLVK------PKTNLSRKLLPISTQYCSSTRRMNSLTTPRAS 57
S A L + S SS L VK PK N S L S + + + S PR
Sbjct: 27 SGSASLGGIKSKSASSGALQVKANAQAPPKINGSPVGLTGSVEIVKTDEDVVSSPAPRTF 86
Query: 58 LN--PD 61
+N PD
Sbjct: 87 INQLPD 92
>gnl|CDD|214374 CHL00141, rpl24, ribosomal protein L24; Validated.
Length = 83
Score = 25.4 bits (56), Expect = 9.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 75 SAVDSGRIGEVKRVTKETNVSVKINVDG 102
S D G+IGEV ++ K++N K+ V G
Sbjct: 19 SGSDKGKIGEVLKIIKKSN---KVIVKG 43
>gnl|CDD|240513 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein L26. RPL26 and
its bacterial paralogs RPL24 have a KOW motif at their N
terminal. KOW domain is known as an RNA-binding motif
that is shared so far among some families of ribosomal
proteins, the essential bacterial transcriptional
elongation factor NusG, the eukaryotic chromatin
elongation factor Spt5, the higher eukaryotic KIN17
proteins and Mtr4. RPL26 makes a very minor
contributions to the biogenesis, structure, and function
of 60s ribosomal subunits. However, RPL24 is essential
to generate the first intermediate during 50s ribosomal
subunits assembly. RPL26 have an extra-ribosomal
function to enhances p53 translation after DNA damage.
Length = 65
Score = 24.8 bits (55), Expect = 9.8
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 78 DSGRIGEVKRVTKETNVSVKINVDG 102
D G+ G+V +V ++ N ++ V+G
Sbjct: 11 DKGKQGKVLKVDRKKN---RVIVEG 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.384
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,723,062
Number of extensions: 953696
Number of successful extensions: 846
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 26
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)