RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027366
         (224 letters)



>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 86

 Score =  112 bits (281), Expect = 8e-33
 Identities = 76/114 (66%), Positives = 83/114 (72%), Gaps = 28/114 (24%)

Query: 80  GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIH 139
           GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDVHVRATGD+H
Sbjct: 1   GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVH 60

Query: 140 IDDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRK 193
           IDDHHTNED+ LAIG                             ALL+ALG+RK
Sbjct: 61  IDDHHTNEDIALAIG----------------------------TALLKALGERK 86


>d2ae8a1 d.14.1.9 (A:1-84) Imidazole glycerol phosphate dehydratase
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 84

 Score =  101 bits (253), Expect = 1e-28
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 29/112 (25%)

Query: 82  IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
           I + +R T ET +++ I+ D    +  +T + FL+HML     H    +++ A GDI +D
Sbjct: 2   IYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVD 60

Query: 142 DHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRK 193
           DHH  ED+G+ IG                            Q LL+ + D+K
Sbjct: 61  DHHVTEDIGIVIG----------------------------QLLLEMIKDKK 84


>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase
           {Fungus (Filobasidiella neoformans) [TaxId: 5207]}
          Length = 92

 Score = 99.9 bits (249), Expect = 4e-28
 Identities = 43/120 (35%), Positives = 57/120 (47%), Gaps = 33/120 (27%)

Query: 79  SGRIGEVKRVTKETNVSVKINVD-----GSGVADSSTCIPFLDHMLDQLASHGLFDVHVR 133
           S RI  V+R T ET++S  I++D          + ST I FLDHM   LA HG   + ++
Sbjct: 1   SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQ 60

Query: 134 ATGDIHIDDHHTNEDVGLAIGTVTIQNGVSCFLCSSEMKFCCIISTFVVQALLQALGDRK 193
             GD+HIDDHHT ED  LA+G                            +A  +ALG+RK
Sbjct: 61  CKGDLHIDDHHTAEDCALALG----------------------------EAFKKALGERK 92


>d2f1da2 d.14.1.9 (A:96-192) Imidazole glycerol phosphate
           dehydratase {Thale cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 97

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 21/23 (91%), Positives = 21/23 (91%)

Query: 194 GINRFGDFTAPLDEALIHVSLVC 216
           GINRFGDFTAPLDEALIHVSL  
Sbjct: 1   GINRFGDFTAPLDEALIHVSLDL 23


>d1rhya2 d.14.1.9 (A:94-187) Imidazole glycerol phosphate
           dehydratase {Fungus (Filobasidiella neoformans) [TaxId:
           5207]}
          Length = 94

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 194 GINRFGDFTAPLDEALIHVSL 214
           GI R+G   APLDE+L    +
Sbjct: 1   GIKRYGYAYAPLDESLSRAVI 21


>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate
           dehydratase {Staphylococcus aureus [TaxId: 1280]}
          Length = 95

 Score = 31.7 bits (72), Expect = 0.014
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 195 INRFGDFTAPLDEALIHVSL 214
             R+G    P+DE L  V +
Sbjct: 2   FVRYGTMYIPMDETLARVVV 21


>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid
           3/5-O-methyltransferase {Alfalfa (Medicago sativa)
           [TaxId: 3879]}
          Length = 107

 Score = 25.5 bits (56), Expect = 3.0
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 106 ADSSTCIPFLDHMLDQLASHGLFDVHVRATGD 137
             +      LD ML  LA + +    VR   D
Sbjct: 56  TTNPDAPVMLDRMLRLLACYIILTCSVRTQQD 87


>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
           (Peniophora sp. SG) [TaxId: 204723]}
          Length = 198

 Score = 26.1 bits (57), Expect = 3.1
 Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 7/42 (16%)

Query: 165 FLCSSEMKFCCIISTFVVQALLQALGDRKGINRFGDFTAPLD 206
           ++    + FC  +       +   L D    +     T    
Sbjct: 1   YITEQSLVFCQTV-------MSTELIDSVKSDMTIRGTPGEL 35


>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
           [TaxId: 4577]}
          Length = 261

 Score = 25.9 bits (56), Expect = 4.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 175 CIISTFVVQALLQALGDRKGINRFGDFTAPLDEAL 209
            II + +V+ L +A   ++G+ R  ++   +  AL
Sbjct: 226 VIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNAL 260


>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 131

 Score = 24.4 bits (53), Expect = 8.3
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 82  IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
           I ++K  T E  V VK +  GS           L+ ++  L    +        GD+   
Sbjct: 13  IEDIKIDTDEAGVVVKADTLGS-----------LEAVVKILRDMYVPIKVA-DIGDVSRR 60

Query: 142 D 142
           D
Sbjct: 61  D 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 761,207
Number of extensions: 31806
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 17
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)