BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027367
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WKN|A Chain A, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|B Chain B, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|C Chain C, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|D Chain D, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|E Chain E, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|F Chain F, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|G Chain G, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|H Chain H, Gamma Lactamase From Delftia Acidovorans
Length = 409
Score = 243 bits (620), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 114/189 (60%), Positives = 143/189 (75%), Gaps = 8/189 (4%)
Query: 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
E ART+P RE+GGNCDIK+LSRGS+++ PV+VDGA LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMA 269
Query: 62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
G++ +K +I+GGM +Y NPIF+ P+ P + ++L+FEGISVDE G QHY
Sbjct: 270 GWVHMKVSLIKGGMAKYGIK--------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHY 321
Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
LD TVAY++A LNAI+YL KFGYS Q Y LL P +G ISG+VD PNA ATL +PT I
Sbjct: 322 LDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGHISGVVDVPNACATLWLPTEI 381
Query: 182 FDQDIRPKS 190
FD DI P +
Sbjct: 382 FDFDINPTA 390
>pdb|2II1|A Chain A, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|B Chain B, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|C Chain C, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|D Chain D, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
Length = 301
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 12 NGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEII 71
+GGN D K++ G+ +YLPV VDGA L+ GD+H + GDGE+ CG +E++G + LK +
Sbjct: 152 HGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAXGDGEILICG-VEIAGTVTLKVNVK 210
Query: 72 R 72
+
Sbjct: 211 K 211
>pdb|3TKK|A Chain A, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
pdb|3TKK|B Chain B, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
pdb|3TKK|C Chain C, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
pdb|3TKK|D Chain D, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
Length = 301
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 8 PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLK 67
PG +GGN D ++ G+++Y PVFV+GA L+ GD+H GDGEV G +E++G + L+
Sbjct: 151 PGS-HGGNMDTTLIAEGAEVYFPVFVEGALLALGDLHALMGDGEVGVSG-VEVAGKVLLE 208
Query: 68 CEIIRG 73
E+I+G
Sbjct: 209 VEVIKG 214
>pdb|2F4L|A Chain A, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
pdb|2F4L|B Chain B, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
pdb|2F4L|C Chain C, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
pdb|2F4L|D Chain D, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
Length = 297
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 9 GRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV 52
+GGN D K ++ ++LPVF +GA L+ GD+H + GDGEV
Sbjct: 152 AHRHGGNXDTKEITENVTVHLPVFQEGALLALGDVHATXGDGEV 195
>pdb|3B9T|A Chain A, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|B Chain B, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|C Chain C, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|D Chain D, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
Length = 484
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 6 TIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMS 61
++P GGN D + +G+ Y PV V G S GD H SQGD E CG AIE S
Sbjct: 306 SVPPSHFGGNIDNWRIGKGATXYYPVSVAGGLFSVGDPHASQGDSEX--CGTAIECS 360
>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
Length = 517
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 195 VGPRLVRKPDVLKCSYEGNLPT 216
GP LV PDV K S G++PT
Sbjct: 219 TGPLLVNHPDVAKVSLTGSVPT 240
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 94 EIGPVEPRFSE-WLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLL 152
EI P P+ S W ++ + G+ +DA +A + A+ L FG+++EQV
Sbjct: 328 EIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMSMLPSFGFTQEQV--- 384
Query: 153 LSCCPCE 159
C CE
Sbjct: 385 --ACVCE 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,389,579
Number of Sequences: 62578
Number of extensions: 320652
Number of successful extensions: 596
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 7
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)